Psyllid ID: psy3185
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 298 | 2.2.26 [Sep-21-2011] | |||||||
| Q80UY1 | 400 | UPF0586 protein C9orf41 h | yes | N/A | 0.989 | 0.737 | 0.542 | 8e-91 | |
| Q8N4J0 | 409 | UPF0586 protein C9orf41 O | yes | N/A | 0.989 | 0.721 | 0.545 | 3e-90 | |
| Q5BJZ6 | 400 | UPF0586 protein C9orf41 h | yes | N/A | 0.989 | 0.737 | 0.531 | 5e-89 | |
| Q9I7X6 | 439 | UPF0586 protein CG11596 O | yes | N/A | 0.986 | 0.669 | 0.479 | 1e-79 | |
| Q9Y7J3 | 373 | UPF0586 protein C1778.07 | yes | N/A | 0.956 | 0.764 | 0.388 | 3e-54 | |
| Q54ST2 | 463 | UPF0586 protein OS=Dictyo | yes | N/A | 0.946 | 0.609 | 0.382 | 2e-48 | |
| P53934 | 400 | UPF0586 protein YNL092W O | yes | N/A | 0.852 | 0.635 | 0.313 | 5e-34 | |
| Q03648 | 457 | Uncharacterized protein Y | no | N/A | 0.600 | 0.391 | 0.276 | 5e-07 |
| >sp|Q80UY1|CI041_MOUSE UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 333 bits (854), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 161/297 (54%), Positives = 205/297 (69%), Gaps = 2/297 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
+V R E+ SLPE QKLL ++ HL+ ++ CID N EI+ I+ D MFEN E
Sbjct: 74 RVNRTERQFRSLPENQQKLLPQFPLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGED 133
Query: 62 IKLISPLPNST-DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKD 120
+P ST D++K+++TLKQFVRDWSE G ER CY+PII EI+ FP E +P
Sbjct: 134 ANG-KIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSK 192
Query: 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180
VNILVPGAGLGRLA+E+A GY CQGNE+S FMLF+SNF+LN+C E N YK+YPW+ Q
Sbjct: 193 VNILVPGAGLGRLAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFS 252
Query: 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI 240
NN + Q + FPD++ +FSM AGDF ++Y N WDC+ATCFFID A+N+
Sbjct: 253 NNRRSADQIRPILFPDVDPHSLPPGSNFSMTAGDFQEIYSECNAWDCIATCFFIDTAHNV 312
Query: 241 VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+ +I+TI+ ILKPGGIWINLGPLLYH+ N+ NE SIE SYE +K V+ GF EVE
Sbjct: 313 IDYIDTIWRILKPGGIWINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFQLEVE 369
|
Mus musculus (taxid: 10090) |
| >sp|Q8N4J0|CI041_HUMAN UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (849), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 204/297 (68%), Gaps = 2/297 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
+V R E+ SLP QKLL ++ HL+ ++ CID N EI+ I+ D MFEN E
Sbjct: 83 RVNRTERQFRSLPANQQKLLPQFLLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGED 142
Query: 62 IKLISPLPNST-DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKD 120
+P ST D++K+++TLKQFVRDWSE G ER CY+PII EIL FP E +P
Sbjct: 143 GNG-KIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSK 201
Query: 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180
VNILVPGAGLGRLA+EIA GY CQGNE+S FMLF+SNF+LN+C E N YK+YPW+ Q
Sbjct: 202 VNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFS 261
Query: 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI 240
NN + Q + FPD++ +FSM AGDF ++Y N WDC+ATCFFID A+N+
Sbjct: 262 NNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSECNTWDCIATCFFIDTAHNV 321
Query: 241 VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+ +I+TI+ ILKPGGIWINLGPLLYH+ N+ NE SIE SYE +K V+ GF EVE
Sbjct: 322 IDYIDTIWKILKPGGIWINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFKVEVE 378
|
Homo sapiens (taxid: 9606) |
| >sp|Q5BJZ6|CI041_RAT UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 158/297 (53%), Positives = 204/297 (68%), Gaps = 2/297 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
+V R E+ SLP+ QKLL ++ HL+ ++ C+D N EI+ I+ D MFEN E
Sbjct: 74 RVNRTERQFRSLPDNQQKLLPQFPLHLDKIRKCVDHNQEILLTIVNDCIHMFENKEYGED 133
Query: 62 IKLISPLPNST-DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKD 120
+P ST D++K+++TLKQFVRDWS G ER CY+PII EI+ FP E +P
Sbjct: 134 ANG-KIMPASTFDMDKLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSK 192
Query: 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180
VNILVPGAGLGRLA+EIA GY CQGNE+S FMLF+SNF+LN+C E + YK+YPW+ Q
Sbjct: 193 VNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFS 252
Query: 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI 240
NN + Q + FPD++ +FSM AGDF ++Y N WDC+ATCFFID A+N+
Sbjct: 253 NNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSECNTWDCIATCFFIDTAHNV 312
Query: 241 VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+ +I+TI+ ILKPGGIWINLGPLLYH+ N+ NE SIE SYE +K V+ GF EVE
Sbjct: 313 IDYIDTIWRILKPGGIWINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFQLEVE 369
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q9I7X6|U586_DROME UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/296 (47%), Positives = 199/296 (67%), Gaps = 2/296 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
++KR+ YL SL + Q +L+KY+ HL +++CID+N +I+ I++ + + + +P
Sbjct: 51 RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVLYPTDEATGDP 110
Query: 62 IKLISPLPN--STDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPK 119
+ P PN D+++ Q+TLK RDWS EG+ ER+ Y+PII I+A F K
Sbjct: 111 SEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELK 170
Query: 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179
D+ ILVPGAGLGRL +E+A GY C+GNEFS FML ASNF+LN C +N Y +YPWV Q
Sbjct: 171 DIKILVPGAGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQY 230
Query: 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN 239
NN+ Q V FPD+ F +AAGDFL+VY PN ++CVATCFFIDCANN
Sbjct: 231 VNNLRREDQVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANN 290
Query: 240 IVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295
++ FI TI+ IL PGGIW+NLGPLLYH+S++ ++SIEP++E + +++ +GFV E
Sbjct: 291 VIDFIRTIYKILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIE 346
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Y7J3|YOI7_SCHPO UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 24/309 (7%)
Query: 3 VKRNEQYLESLPEKHQKLLSKYKD-----HLNDLKSCIDKNYEIIKLII-KDVGVMFENV 56
++ + + L +H+ LL + D HL+ + CI++N + + I + V +
Sbjct: 29 TQQKRKSMSRLSFEHKDLLLQDSDNNFLKHLSRIDQCIEQNSVLAEAIANAAIPVFCSDF 88
Query: 57 PSSEPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETI 116
+E + N ++KV +TLKQ RDWS E EER+T Y P I E+ + FP ++I
Sbjct: 89 DQNELFHV-----NVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNSLFPSDSI 143
Query: 117 NPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176
+ + +LVPG+GLGRLAF+IA G+ CQGNEFS FML S+FILN +++N + +YP++
Sbjct: 144 DRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQFLVYPYI 203
Query: 177 QQTDNNILTHHQTMAVTFPDINTSDY-NDDCDFSMAAGDFLQVYVHPNKWDC---VATCF 232
N+++ Q ++ PD S Y + +FSMAAGDFL+VY D VATCF
Sbjct: 204 HSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQVVATCF 263
Query: 233 FIDCANNIVSFIETIFNILKPGGIWINLGPLLYHY----SNMLNEDS-----IEPSYEVV 283
FID NI+ +++TI N L GG WINLGPLLYH+ ++ N DS +E + E +
Sbjct: 264 FIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHFESEGTSNSNSDSQQQPFVELTLEQL 323
Query: 284 KQVIQGLGF 292
V+ +GF
Sbjct: 324 FYVMDSMGF 332
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54ST2|U586_DICDI UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 13 LPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMF----ENVPSSE----PIKL 64
L E +KLL Y + L + N + +K I + +F +N +SE P L
Sbjct: 137 LSEDEKKLLPNYNAKMEALARAVLVNSQFLKKIGNEHCNIFSQSSDNSANSERIVDPTNL 196
Query: 65 ISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKD-VNI 123
+ ++++++T++Q VR+WSEEG ER +EPI ++L + + + +
Sbjct: 197 DHIKIDYFMMDQLKSTIRQLVREWSEEGKLERDQAFEPIKQQLLEIYGHIPFQERSKIRV 256
Query: 124 LVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183
PGAGLGRL EIA G+ QG E+S ML SNF+LNK + N +KI+P++ QT N +
Sbjct: 257 YSPGAGLGRLCLEIASLGFSSQGIEYSFMMLIVSNFMLNKVEKINEFKIHPYIHQTVNVL 316
Query: 184 LTHHQTMAVTFPDINTSDY----NDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN 239
Q VT PD+ +S+ N +FSM+AGDF + + N +DC+ TCFFID A N
Sbjct: 317 RDIDQLRTVTIPDVLSSELLPKNNPALEFSMSAGDFTK-NIEENSFDCICTCFFIDTAPN 375
Query: 240 IVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
I+ +++ I ILKPGG WIN GPLLYH++ +DSIE SYE ++ +I F ++ E
Sbjct: 376 ILEYVDCISKILKPGGTWINFGPLLYHHAK--KKDSIELSYEQLRYLICKKQFQFKKE 431
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P53934|YNJ2_YEAST UPF0586 protein YNL092W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL092W PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 147/297 (49%), Gaps = 43/297 (14%)
Query: 12 SLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNS 71
S+ ++ + ++ Y +L +LK+ I +N + + + + +++ S EP +++ P N
Sbjct: 43 SISDRQKDMVPNYTKYLANLKAAIIENGKFFRSVAE---YALQSI-SFEPGEIVQP--ND 96
Query: 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPP--ETINPKDVNILVPGAG 129
D+ K + L Q R+WS E ER + +R P +T++P +IL+PG G
Sbjct: 97 LDMSKTCSLLTQVYREWSAEAISERNC--------LNSRLVPFLKTLSPPKADILIPGCG 148
Query: 130 LGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQT 189
GRL +++R GY C+GNEFS ML S ++LN +N IYP++ + Q
Sbjct: 149 TGRLLVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQL 208
Query: 190 MAVTFPDINTSDYNDDC-DFSMAAGDFLQVYVH-----------------------PNKW 225
+ PDI N S+ AG F+ Y N
Sbjct: 209 SPIKVPDIEAWSSNKGMGSMSICAGSFVDCYGRNQGTKISSHYTFSRRMQLSRAKAENSK 268
Query: 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEV 282
D V T FFID +NI+ +++TI ++LKPGGIW N GPLLYH+ N+ +E +YEV
Sbjct: 269 DVVVTNFFIDTGSNILDYLDTIGHVLKPGGIWCNFGPLLYHFE---NDHGVETTYEV 322
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q03648|YM59_YEAST Uncharacterized protein YMR209C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR209C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 77 VQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVN----ILVPGAGLGR 132
V L RD+S S ER +P+ + I++R I+ D+ I+ PGAG+G
Sbjct: 206 VHEALAHLCRDFSSYYSVER----DPLQNFIISRINHHVISAGDMKEKILIVTPGAGVGG 261
Query: 133 LAFEIARRGYVCQGN--EFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTM 190
L+ +A Q + E S M + F L K+ KI P+VQQ + +Q
Sbjct: 262 LSHTLATTFPKIQVDSIELSALMYICNLFALEY---KHDVKIRPFVQQYSCQTVFDNQLR 318
Query: 191 AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCANNIVSFIETIF 248
+++ D++ + + D GDF + +D + C +FID A N+ ++ +I
Sbjct: 319 SLS-ADLSKVGHRSNLD--PLWGDFTRYSPISKDYDKIIICSAYFIDTAENMFEYLSSIE 375
Query: 249 NILK--PGGIWINLGPLLY 265
+ K W+N+GPL Y
Sbjct: 376 ALKKYCKELHWVNVGPLKY 394
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 298 | ||||||
| 383854597 | 402 | PREDICTED: UPF0586 protein C9orf41 homol | 0.993 | 0.736 | 0.661 | 1e-114 | |
| 328785109 | 398 | PREDICTED: UPF0586 protein C9orf41 homol | 0.996 | 0.746 | 0.649 | 1e-113 | |
| 380022359 | 398 | PREDICTED: UPF0586 protein C9orf41 homol | 0.996 | 0.746 | 0.649 | 1e-113 | |
| 340724696 | 393 | PREDICTED: UPF0586 protein C9orf41 homol | 0.996 | 0.755 | 0.652 | 1e-113 | |
| 350398180 | 399 | PREDICTED: UPF0586 protein C9orf41 homol | 0.996 | 0.744 | 0.642 | 1e-112 | |
| 307169373 | 393 | UPF0586 protein C9orf41-like protein [Ca | 0.996 | 0.755 | 0.638 | 1e-111 | |
| 307201516 | 396 | UPF0586 protein C9orf41-like protein [Ha | 0.993 | 0.747 | 0.634 | 1e-111 | |
| 345493499 | 397 | PREDICTED: UPF0586 protein C9orf41 homol | 0.993 | 0.745 | 0.651 | 1e-110 | |
| 332027213 | 396 | UPF0586 protein C9orf41-like protein [Ac | 0.996 | 0.75 | 0.628 | 1e-110 | |
| 321476561 | 356 | hypothetical protein DAPPUDRAFT_43139 [D | 0.986 | 0.825 | 0.584 | 1e-103 |
| >gi|383854597|ref|XP_003702807.1| PREDICTED: UPF0586 protein C9orf41 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 236/304 (77%), Gaps = 8/304 (2%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV-PSS- 59
+VK+ E YL SLP KHQKLLSKY++HL ++K CI+ N EIIKLIIKDV +FENV PSS
Sbjct: 42 RVKKTESYLSSLPTKHQKLLSKYREHLQEVKRCIENNDEIIKLIIKDVAHIFENVSPSSA 101
Query: 60 --EPIK----LISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPP 113
E ++ ++P P D EKVQ T+KQ VRDWS EG+EER CY+PII EI+ +FP
Sbjct: 102 QTESVRKVHLTLNPRPVMADQEKVQATIKQLVRDWSVEGTEERSACYQPIIDEIMNQFPL 161
Query: 114 ETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIY 173
+ P DV ILVPGAGLGRLA+EIARRGY CQGNEFSLFMLFAS+F+LNKCR N Y+++
Sbjct: 162 DYCTPSDVQILVPGAGLGRLAYEIARRGYTCQGNEFSLFMLFASHFVLNKCRGINSYQVH 221
Query: 174 PWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF 233
PWV Q NN+ HQT AV FPD+N SD ++ FSMAAGDFL+VY N WDCVATCFF
Sbjct: 222 PWVHQYMNNLKPEHQTQAVFFPDVNPSDLPENAQFSMAAGDFLEVYTEDNHWDCVATCFF 281
Query: 234 IDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFV 293
IDCANN+V FIETI+ ILKPGGIWINLGPLLYH+S+M EDSIEPSY+VV+ VIQG GF
Sbjct: 282 IDCANNVVQFIETIYKILKPGGIWINLGPLLYHFSDMPMEDSIEPSYDVVRDVIQGFGFE 341
Query: 294 YEVE 297
E E
Sbjct: 342 LEKE 345
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328785109|ref|XP_623835.3| PREDICTED: UPF0586 protein C9orf41 homolog [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/305 (64%), Positives = 234/305 (76%), Gaps = 8/305 (2%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV---- 56
++VK+ E YL SLP HQKLLSKY++HL ++K CI+ N EIIKLIIKDV +FENV
Sbjct: 41 LRVKKTESYLLSLPAHHQKLLSKYREHLQEVKRCIENNDEIIKLIIKDVAHIFENVSPAT 100
Query: 57 PSSEPIK----LISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFP 112
+E ++ ++P P D EKVQ T+KQ VRDWS EG+EER CY+PII EI+ +FP
Sbjct: 101 AQTESVRKVHLTLNPRPVMADQEKVQATIKQLVRDWSVEGTEERMACYQPIIDEIMNQFP 160
Query: 113 PETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKI 172
E P DV ILVPGAGLGRLA+EIARRGY CQGNEFSLFMLFAS+F+LNKCR N Y++
Sbjct: 161 LEYCTPSDVQILVPGAGLGRLAYEIARRGYTCQGNEFSLFMLFASHFVLNKCRGVNSYQV 220
Query: 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF 232
+PWV Q NN+ HQT AV FPD+N SD ++ FSMAAGDFL+VY N WDCVATCF
Sbjct: 221 HPWVHQYMNNLKPEHQTQAVFFPDVNPSDLPENAQFSMAAGDFLEVYTENNHWDCVATCF 280
Query: 233 FIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292
FIDCANN+V FIETI+ ILKPGGIWINLGPLLYH+S+M EDSIEPSY+VV+ VIQG GF
Sbjct: 281 FIDCANNVVQFIETIYKILKPGGIWINLGPLLYHFSDMPMEDSIEPSYDVVRDVIQGFGF 340
Query: 293 VYEVE 297
E E
Sbjct: 341 QLEKE 345
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380022359|ref|XP_003695017.1| PREDICTED: UPF0586 protein C9orf41 homolog [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/305 (64%), Positives = 234/305 (76%), Gaps = 8/305 (2%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV---- 56
++VK+ E YL SLP HQKLLSKY++HL ++K CI+ N EIIKLIIKDV +FENV
Sbjct: 41 LRVKKTESYLLSLPAHHQKLLSKYREHLQEVKRCIENNDEIIKLIIKDVAHIFENVSPTT 100
Query: 57 PSSEPIK----LISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFP 112
+E ++ ++P P D EKVQ T+KQ VRDWS EG+EER CY+PII EI+ +FP
Sbjct: 101 AQTESVRKVHLTLNPRPVMADQEKVQATIKQLVRDWSVEGTEERMACYQPIIDEIMNQFP 160
Query: 113 PETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKI 172
E P DV ILVPGAGLGRLA+EIARRGY CQGNEFSLFMLFAS+F+LNKCR N Y++
Sbjct: 161 LEYCTPSDVQILVPGAGLGRLAYEIARRGYTCQGNEFSLFMLFASHFVLNKCRGVNSYQV 220
Query: 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF 232
+PWV Q NN+ HQT AV FPD+N SD ++ FSMAAGDFL+VY N WDCVATCF
Sbjct: 221 HPWVHQYMNNLKPEHQTQAVFFPDVNPSDLPENAQFSMAAGDFLEVYTENNHWDCVATCF 280
Query: 233 FIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292
FIDCANN+V FIETI+ ILKPGGIWINLGPLLYH+S+M EDSIEPSY+VV+ VIQG GF
Sbjct: 281 FIDCANNVVQFIETIYKILKPGGIWINLGPLLYHFSDMPMEDSIEPSYDVVRDVIQGFGF 340
Query: 293 VYEVE 297
E E
Sbjct: 341 QLEKE 345
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724696|ref|XP_003400717.1| PREDICTED: UPF0586 protein C9orf41 homolog [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/299 (65%), Positives = 232/299 (77%), Gaps = 2/299 (0%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV--PS 58
++VK+ E YL SLP HQKLLSKY++HL ++K CI+ N EIIKLIIKDV +FENV +
Sbjct: 41 LRVKKTESYLLSLPAHHQKLLSKYREHLQEVKRCIENNDEIIKLIIKDVAHIFENVSPAT 100
Query: 59 SEPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINP 118
++ ++P P D EKVQ T+KQ VRDWS EG+EER CY+PII EI+ +FP + P
Sbjct: 101 AQTDSTLNPRPVMADQEKVQATIKQLVRDWSVEGTEERMACYQPIIDEIMNQFPVDYCTP 160
Query: 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178
DV ILVPGAGLGRLA+EIARRGY CQGNEFSLFMLFAS+F+LNKCR N Y+++PWV Q
Sbjct: 161 SDVQILVPGAGLGRLAYEIARRGYTCQGNEFSLFMLFASHFVLNKCRGVNSYQVHPWVHQ 220
Query: 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN 238
NN+ HQT AV FPD+N SD ++ FSMAAGDFL+VY N WDCVATCFFIDCAN
Sbjct: 221 YMNNLKPEHQTQAVFFPDVNPSDLPENAQFSMAAGDFLEVYTEDNHWDCVATCFFIDCAN 280
Query: 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
N+V FIETI+ ILKPGGIWINLGPLLYH+S+M EDSIEPSY+VV+ VI G GF E E
Sbjct: 281 NVVQFIETIYKILKPGGIWINLGPLLYHFSDMPMEDSIEPSYDVVRDVIHGFGFQLEKE 339
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350398180|ref|XP_003485110.1| PREDICTED: UPF0586 protein C9orf41 homolog [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/305 (64%), Positives = 232/305 (76%), Gaps = 8/305 (2%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVP--- 57
++VK+ E YL SLP HQ+LLSKY++HL ++K CI+ N EIIKLIIKDV +FENV
Sbjct: 41 LRVKKTESYLLSLPAHHQRLLSKYREHLQEVKRCIENNDEIIKLIIKDVAHIFENVSPAT 100
Query: 58 ----SSEPIKL-ISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFP 112
S + L ++P P D EKVQ T+KQ VRDWS EG+EER CY+PII EI+ +FP
Sbjct: 101 AQTDSVRKVHLTLNPRPVMADQEKVQATIKQLVRDWSVEGTEERMACYQPIIDEIMNQFP 160
Query: 113 PETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKI 172
+ P DV ILVPGAGLGRLA+EIARRGY CQGNEFSLFMLFAS+F+LNKCR N Y++
Sbjct: 161 ADYCTPSDVQILVPGAGLGRLAYEIARRGYTCQGNEFSLFMLFASHFVLNKCRGVNSYQV 220
Query: 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF 232
+PWV Q NN+ HQT AV FPD+N SD ++ FSMAAGDFL+VY N WDCVATCF
Sbjct: 221 HPWVHQYMNNLKPEHQTQAVFFPDVNPSDLPENAQFSMAAGDFLEVYTEDNHWDCVATCF 280
Query: 233 FIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292
FIDCANN+V FIETI+ ILKPGGIWINLGPLLYH+S+M EDSIEPSY+VV+ VI G GF
Sbjct: 281 FIDCANNVVQFIETIYKILKPGGIWINLGPLLYHFSDMPMEDSIEPSYDVVRDVIHGFGF 340
Query: 293 VYEVE 297
E E
Sbjct: 341 QLEKE 345
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169373|gb|EFN62094.1| UPF0586 protein C9orf41-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/299 (63%), Positives = 234/299 (78%), Gaps = 2/299 (0%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV-PSS 59
++V++ E Y +LP HQKLLSKYK+HL ++K CI+ N +IIKLIIKDV +FENV PS+
Sbjct: 44 LRVRKTESYFLNLPTHHQKLLSKYKEHLQEVKRCIENNDQIIKLIIKDVAHIFENVCPST 103
Query: 60 EPI-KLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINP 118
I +++P D EKVQ T++Q VRDWS EG+EERK CY+PII E+L +FP E P
Sbjct: 104 AQIDSILNPRSVMADQEKVQATIRQLVRDWSVEGAEERKACYQPIIDEVLYQFPLEHCTP 163
Query: 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178
DV+ILVPGAGLGRLAFEIA+RGY CQGNEFSLFMLFASNF+LNKCR+ N+Y+++PWV Q
Sbjct: 164 SDVHILVPGAGLGRLAFEIAKRGYTCQGNEFSLFMLFASNFVLNKCRDVNLYQVHPWVHQ 223
Query: 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN 238
NN+ HQT AV+FPD++ SD FSM AGDFL+VY N WDCVATCFFIDCAN
Sbjct: 224 YTNNLKPEHQTQAVSFPDVSPSDLPGTAQFSMTAGDFLEVYTEDNHWDCVATCFFIDCAN 283
Query: 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
N+V FIETI+ ILKPGGIWINLGPLLYH+S++ NE+SIEPSY+ ++ VI G GF E E
Sbjct: 284 NVVQFIETIYKILKPGGIWINLGPLLYHFSDLPNEESIEPSYDSIRDVILGFGFQLEKE 342
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307201516|gb|EFN81279.1| UPF0586 protein C9orf41-like protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/298 (63%), Positives = 233/298 (78%), Gaps = 2/298 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV--PSS 59
+VK++E YL +LP HQKLLSKY++HL ++K CI+ N IIKLIIKDV +FENV ++
Sbjct: 44 RVKKSESYLLTLPTHHQKLLSKYREHLQEVKRCIENNDHIIKLIIKDVAHIFENVHPATA 103
Query: 60 EPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPK 119
+ ++P P D EKVQ T+KQ VRDWS EG+EER CY+PII EIL +FP + P
Sbjct: 104 QTDSTLNPRPVMVDQEKVQATIKQLVRDWSVEGTEERTACYQPIIEEILCQFPLDQCTPS 163
Query: 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179
+V+ILVPGAGLGRLAFEIARRGY CQGNEFSLFMLFASNF+LNKCR+ N+Y+++PWV Q
Sbjct: 164 NVHILVPGAGLGRLAFEIARRGYTCQGNEFSLFMLFASNFVLNKCRDVNLYQVHPWVHQY 223
Query: 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN 239
NN+ HQT AV+FPD++ SD FSM AGDFL+VY N WDCVATCFFIDCANN
Sbjct: 224 MNNLKPDHQTQAVSFPDVSPSDLPGTAQFSMTAGDFLEVYTEDNHWDCVATCFFIDCANN 283
Query: 240 IVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+V FIETI+ ILKPGG+WINLGPLLYH+S++ NE+SIEPSY+ +++VI G GF E E
Sbjct: 284 VVQFIETIYKILKPGGVWINLGPLLYHFSDLPNEESIEPSYDAIREVILGFGFRLEKE 341
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345493499|ref|XP_001601476.2| PREDICTED: UPF0586 protein C9orf41 homolog [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/298 (65%), Positives = 229/298 (76%), Gaps = 2/298 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV--PSS 59
+VK+ E+YL SLP HQKLLSKY++HL ++K CI+ N +IIKLIIKDV +FENV SS
Sbjct: 44 RVKKTERYLLSLPPHHQKLLSKYREHLQEVKRCIENNDDIIKLIIKDVAHIFENVTPASS 103
Query: 60 EPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPK 119
++ P D EKVQ T+KQ VRDWS EG EER+TCY+PII EIL +FP E P
Sbjct: 104 ATDSALAHRPIMADQEKVQATIKQLVRDWSTEGIEERRTCYQPIIDEILNQFPLEHCTPA 163
Query: 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179
++ ILVPGAGLGRLA+EIARRGY CQGNEFSLFMLFAS+F+LNKCR N YK++PWV Q
Sbjct: 164 EIQILVPGAGLGRLAYEIARRGYTCQGNEFSLFMLFASHFVLNKCRGINSYKVHPWVHQY 223
Query: 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN 239
NN+ HQ V FPD+N SD ++ FSMAAGDFL+VY N WDCVATCFFIDCANN
Sbjct: 224 MNNLQPEHQVQEVYFPDVNPSDLPENAQFSMAAGDFLEVYTEENHWDCVATCFFIDCANN 283
Query: 240 IVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+V FIETI+ ILKPGGIWINLGPLLYH+S+M E+SIEPSY V+ VI+GLGF E E
Sbjct: 284 VVQFIETIYKILKPGGIWINLGPLLYHFSDMPMEESIEPSYSEVRDVIRGLGFQIEKE 341
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027213|gb|EGI67302.1| UPF0586 protein C9orf41-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/299 (62%), Positives = 235/299 (78%), Gaps = 2/299 (0%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENV-PSS 59
++V++ E Y SLP+ HQKLLSKYK+HL ++K CI+ N +IIKLIIKDV +FENV P++
Sbjct: 44 LRVRKTESYFLSLPQHHQKLLSKYKEHLQEVKRCIENNDQIIKLIIKDVAHIFENVCPTT 103
Query: 60 EPI-KLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINP 118
+ ++ P +D EKVQ T+KQ VRDWS EG+EERK CY+ I+ EIL +FP E P
Sbjct: 104 AQVDNTLNLRPVMSDQEKVQATIKQLVRDWSVEGAEERKACYQLIVDEILYQFPLENCKP 163
Query: 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178
DV+ILVPGAGLGRLAFEIA+RGY CQGNEFSLFMLFASNF+LNKCR+ N+Y+++PWV Q
Sbjct: 164 SDVHILVPGAGLGRLAFEIAKRGYTCQGNEFSLFMLFASNFVLNKCRDINLYQVHPWVHQ 223
Query: 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN 238
NN+ HQT AV+FPD++ SD + FSM AGDFL+VY + WDC+ATCFFIDCAN
Sbjct: 224 YMNNLKPEHQTQAVSFPDVSPSDLPGNAQFSMTAGDFLEVYTESSHWDCIATCFFIDCAN 283
Query: 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
N+V FIETI+ ILKPGG+WINLGPLLYH+S++ NEDSIEPSY+ ++ VI G GF E E
Sbjct: 284 NVVQFIETIYKILKPGGVWINLGPLLYHFSDLPNEDSIEPSYDAIRDVILGFGFQLEKE 342
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321476561|gb|EFX87521.1| hypothetical protein DAPPUDRAFT_43139 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/296 (58%), Positives = 217/296 (73%), Gaps = 2/296 (0%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
++ +E Y+ SLP HQ LL+ Y+ HL D+++C++ NYEIIKLI DV +FENV
Sbjct: 33 RLANSEAYVSSLPSHHQTLLTSYRSHLEDIRTCVEHNYEIIKLITADVATLFENVKHDAG 92
Query: 62 IKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDV 121
+ P +D+EKVQ+TLKQ VRDWS++G EER CY PII EI FPP + V
Sbjct: 93 QSKVHP--TMSDMEKVQSTLKQIVRDWSKDGEEERSACYNPIIEEIELNFPPAQRPSEQV 150
Query: 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181
ILVPGAGLGRLAFEIA+RGY CQGNEFSLFMLFASNF+LNKC+ +++YPW QQ N
Sbjct: 151 QILVPGAGLGRLAFEIAKRGYSCQGNEFSLFMLFASNFVLNKCQGVETFRVYPWTQQFVN 210
Query: 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV 241
+ T +FPD++ S FSMAAGDFL+VY + WDC+ATCFFIDCANNIV
Sbjct: 211 TLSAADVTRGSSFPDLDPSSLPRHAQFSMAAGDFLEVYTEASTWDCIATCFFIDCANNIV 270
Query: 242 SFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
SFIETI+ ILK GG+WINLGPLLYHYS++ E+SIEP+YE+V++++QG+GFV E E
Sbjct: 271 SFIETIYKILKSGGVWINLGPLLYHYSDIPGENSIEPTYEMVREIVQGIGFVIEKE 326
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 298 | ||||||
| ZFIN|ZDB-GENE-050306-48 | 373 | zgc:112985 "zgc:112985" [Danio | 0.993 | 0.793 | 0.538 | 4.1e-88 | |
| MGI|MGI:1914633 | 400 | 2410127L17Rik "RIKEN cDNA 2410 | 0.989 | 0.737 | 0.542 | 3e-85 | |
| FB|FBgn0023522 | 439 | CG11596 [Drosophila melanogast | 0.986 | 0.669 | 0.479 | 1.5e-74 | |
| POMBASE|SPBC1778.07 | 373 | SPBC1778.07 "methyltransferase | 0.949 | 0.758 | 0.394 | 1.5e-51 | |
| TAIR|locus:2045542 | 571 | AT2G32170 [Arabidopsis thalian | 0.781 | 0.408 | 0.423 | 6.8e-51 | |
| TAIR|locus:2045547 | 463 | AT2G32160 "AT2G32160" [Arabido | 0.755 | 0.485 | 0.445 | 1.1e-50 | |
| DICTYBASE|DDB_G0282239 | 463 | DDB_G0282239 "N2227-like domai | 0.979 | 0.630 | 0.378 | 2.6e-47 | |
| ASPGD|ASPL0000056516 | 418 | AN0865 [Emericella nidulans (t | 0.885 | 0.631 | 0.366 | 1.9e-44 | |
| CGD|CAL0000364 | 395 | orf19.592 [Candida albicans (t | 0.694 | 0.524 | 0.334 | 6.5e-39 | |
| UNIPROTKB|Q59X87 | 395 | CaO19.592 "Putative uncharacte | 0.694 | 0.524 | 0.334 | 6.5e-39 |
| ZFIN|ZDB-GENE-050306-48 zgc:112985 "zgc:112985" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 160/297 (53%), Positives = 212/297 (71%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
+V R E+ LP+ HQ+LL+ + HLN L+ CID+N E+++ ++ + MFEN+ +
Sbjct: 45 RVNRAERQFRCLPDHHQQLLTNFLPHLNKLRYCIDQNQEVLQAVVHNCLHMFENMEYGQD 104
Query: 62 IKLISPLPNST-DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKD 120
+ P+ST D++K+++T+KQFVRDWSE G ER +CY+PII EI FPP+ +
Sbjct: 105 VDPRKVRPSSTFDMDKLKSTIKQFVRDWSEAGKAERDSCYKPIIDEIQRLFPPDQCDVSQ 164
Query: 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180
V +LVPGAGLGRLA+EIA GY CQGNE+S FMLF+SNF+LN+C ++N +YPW+ Q
Sbjct: 165 VRVLVPGAGLGRLAWEIAHLGYSCQGNEWSFFMLFSSNFVLNRCDKENALTLYPWIHQFS 224
Query: 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI 240
NN + QT V+FPD+N +D DFSM AGDF +VY P WDCVATCFFID A+N+
Sbjct: 225 NNKASSDQTRPVSFPDVNPQSLPEDSDFSMVAGDFQEVYNDPEMWDCVATCFFIDTAHNV 284
Query: 241 VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+ +IETI+NILKPGG+W+NLGPLLYHY NM NE SIE SYE +K V GFV E+E
Sbjct: 285 LDYIETIWNILKPGGVWLNLGPLLYHYENMANELSIELSYEDIKAVAMKYGFVLELE 341
|
|
| MGI|MGI:1914633 2410127L17Rik "RIKEN cDNA 2410127L17 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 161/297 (54%), Positives = 205/297 (69%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
+V R E+ SLPE QKLL ++ HL+ ++ CID N EI+ I+ D MFEN E
Sbjct: 74 RVNRTERQFRSLPENQQKLLPQFPLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGED 133
Query: 62 IKLISPLPNST-DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKD 120
+P ST D++K+++TLKQFVRDWSE G ER CY+PII EI+ FP E +P
Sbjct: 134 ANG-KIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSK 192
Query: 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180
VNILVPGAGLGRLA+E+A GY CQGNE+S FMLF+SNF+LN+C E N YK+YPW+ Q
Sbjct: 193 VNILVPGAGLGRLAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFS 252
Query: 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI 240
NN + Q + FPD++ +FSM AGDF ++Y N WDC+ATCFFID A+N+
Sbjct: 253 NNRRSADQIRPILFPDVDPHSLPPGSNFSMTAGDFQEIYSECNAWDCIATCFFIDTAHNV 312
Query: 241 VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
+ +I+TI+ ILKPGGIWINLGPLLYH+ N+ NE SIE SYE +K V+ GF EVE
Sbjct: 313 IDYIDTIWRILKPGGIWINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFQLEVE 369
|
|
| FB|FBgn0023522 CG11596 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 142/296 (47%), Positives = 199/296 (67%)
Query: 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEP 61
++KR+ YL SL + Q +L+KY+ HL +++CID+N +I+ I++ + + + +P
Sbjct: 51 RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVLYPTDEATGDP 110
Query: 62 IKLISPLPNST--DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPK 119
+ P PN D+++ Q+TLK RDWS EG+ ER+ Y+PII I+A F K
Sbjct: 111 SEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELK 170
Query: 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179
D+ ILVPGAGLGRL +E+A GY C+GNEFS FML ASNF+LN C +N Y +YPWV Q
Sbjct: 171 DIKILVPGAGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQY 230
Query: 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN 239
NN+ Q V FPD+ F +AAGDFL+VY PN ++CVATCFFIDCANN
Sbjct: 231 VNNLRREDQVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANN 290
Query: 240 IVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295
++ FI TI+ IL PGGIW+NLGPLLYH+S++ ++SIEP++E + +++ +GFV E
Sbjct: 291 VIDFIRTIYKILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIE 346
|
|
| POMBASE|SPBC1778.07 SPBC1778.07 "methyltransferase N2227 family" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 122/309 (39%), Positives = 179/309 (57%)
Query: 4 KRNEQYLESLPEKHQKLLSKYKD-----HLNDLKSCIDKNYEIIKLIIKD-VGVMFENVP 57
++ + + L +H+ LL + D HL+ + CI++N + + I + V +
Sbjct: 30 QQKRKSMSRLSFEHKDLLLQDSDNNFLKHLSRIDQCIEQNSVLAEAIANAAIPVFCSDFD 89
Query: 58 SSEPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETIN 117
+E + N ++KV +TLKQ RDWS E EER+T Y P I E+ + FP ++I+
Sbjct: 90 QNELFHV-----NVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNSLFPSDSID 144
Query: 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177
+ +LVPG+GLGRLAF+IA G+ CQGNEFS FML S+FILN +++N + +YP++
Sbjct: 145 RSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQFLVYPYIH 204
Query: 178 QTDNNILTHHQTMAVTFPDINTSDY-NDDCDFSMAAGDFLQVYVHPNKWDC---VATCFF 233
N+++ Q ++ PD S Y + +FSMAAGDFL+VY D VATCFF
Sbjct: 205 SFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQVVATCFF 264
Query: 234 IDCANNIVSFIETIFNILKPGGIWINLGPLLYHY-----SNMLNEDS-----IEPSYEVV 283
ID NI+ +++TI N L GG WINLGPLLYH+ SN N DS +E + E +
Sbjct: 265 IDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHFESEGTSNS-NSDSQQQPFVELTLEQL 323
Query: 284 KQVIQGLGF 292
V+ +GF
Sbjct: 324 FYVMDSMGF 332
|
|
| TAIR|locus:2045542 AT2G32170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 108/255 (42%), Positives = 149/255 (58%)
Query: 65 ISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPP---ETI----N 117
++P+ V+ ++ VRDW+ EG ER CY+PI+ E+ + FP E+ +
Sbjct: 282 VNPVELKCTFLHVRCIIRNIVRDWAAEGQRERDQCYKPILEELDSLFPDRLKESTCCIHS 341
Query: 118 PKDVNI---------LVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKN 168
P V+ LVPGAGLGRLA EI+ G++ QGNEFS +M+ S+FILN +
Sbjct: 342 PYKVDYMICSTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVPG 401
Query: 169 VYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY---VHPNKW 225
+ IYPW+ N++ + Q + PDI+ + FSM GDF++VY H W
Sbjct: 402 EWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGMW 461
Query: 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML---NEDSIEPSYEV 282
D V TCFFID A+N++ +I+TI ILK GG+WINLGPLLYH+++ NE SIE S E
Sbjct: 462 DAVVTCFFIDTAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLED 521
Query: 283 VKQVIQGLGFVYEVE 297
VK+V GFV E E
Sbjct: 522 VKRVASHFGFVIEKE 536
|
|
| TAIR|locus:2045547 AT2G32160 "AT2G32160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 103/231 (44%), Positives = 139/231 (60%)
Query: 73 DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGR 132
D+ KV+ ++ VRDW EG ER CY+PI+ E+ + FP LVPGAGLGR
Sbjct: 198 DVNKVRWVIRNIVRDWGAEGQRERDECYKPILEELDSLFPDRHKESTRPACLVPGAGLGR 257
Query: 133 LAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAV 192
LA EI+ G+ QGNE S +M+ S+FILN + + IYPW+ N++ Q +
Sbjct: 258 LALEISCLGFRSQGNEVSYYMMLCSSFILNYTQLPGEWTIYPWIHTNCNSLSDDDQLRPI 317
Query: 193 TFPDINTSDYNDDCDFSMAAGDFLQVYVHPNK---WDCVATCFFIDCANNIVSFIETIFN 249
+ PDI+ + FSM GDF++V+ ++ WD V TCFFID A+NI+ +IETI
Sbjct: 318 SIPDIHPASAGVTESFSMCRGDFVEVFNESSQAGMWDAVVTCFFIDTAHNIIEYIETISK 377
Query: 250 ILKPGGIWINLGPLLYHYSN---MLNEDSIEPSYEVVKQVIQGLGFVYEVE 297
ILK GG+ INLGPLLYH+++ + NE SIE S E VK+V GF E E
Sbjct: 378 ILKDGGVLINLGPLLYHFADEQGLENEMSIELSLEDVKRVASHYGFEMEKE 428
|
|
| DICTYBASE|DDB_G0282239 DDB_G0282239 "N2227-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 117/309 (37%), Positives = 176/309 (56%)
Query: 3 VKRNEQYLE-SLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMF----ENVP 57
VK + + L E +KLL Y + L + N + +K I + +F +N
Sbjct: 126 VKDMQDFFHYKLSEDEKKLLPNYNAKMEALARAVLVNSQFLKKIGNEHCNIFSQSSDNSA 185
Query: 58 SSEPIKLISPLPN-STD---LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPP 113
+SE I + L + D ++++++T++Q VR+WSEEG ER +EPI ++L +
Sbjct: 186 NSERIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLERDQAFEPIKQQLLEIYGH 245
Query: 114 ETINPKD-VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKI 172
+ + + PGAGLGRL EIA G+ QG E+S ML SNF+LNK + N +KI
Sbjct: 246 IPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLIVSNFMLNKVEKINEFKI 305
Query: 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDY----NDDCDFSMAAGDFLQVYVHPNKWDCV 228
+P++ QT N + Q VT PD+ +S+ N +FSM+AGDF + + N +DC+
Sbjct: 306 HPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALEFSMSAGDFTK-NIEENSFDCI 364
Query: 229 ATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQ 288
TCFFID A NI+ +++ I ILKPGG WIN GPLLYH++ +DSIE SYE ++ +I
Sbjct: 365 CTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLLYHHAK--KKDSIELSYEQLRYLIC 422
Query: 289 GLGFVYEVE 297
F ++ E
Sbjct: 423 KKQFQFKKE 431
|
|
| ASPGD|ASPL0000056516 AN0865 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 104/284 (36%), Positives = 157/284 (55%)
Query: 5 RNEQYLESLPEKHQKLLSK----YKDHLNDLKSCIDKNYEIIKLII----KDVGVMFENV 56
R Q +LP KH ++L++ D+ N + ID N +I II K G+ +
Sbjct: 52 RRRQAFYALPTKHWQMLAEPPFSLLDNFNKVDDAIDANADIADAIIGTGLKSFGLPEQPD 111
Query: 57 PSSEPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETI 116
PS+ P++ + NS D+ K +T++QF RDWS EG ER+ CY P++ ++ FP +
Sbjct: 112 PSN-PLQNWRGVANSADINKAHSTIRQFYRDWSAEGQAEREACYIPVLRDLDLEFPDKLE 170
Query: 117 NPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176
+ V +LVPGAGLGRL FEI R G+ +GNE S L AS+++LN + +YP+
Sbjct: 171 REEFVKVLVPGAGLGRLVFEICRAGFAAEGNEISYHQLLASSWVLNHTEGAQRHALYPFA 230
Query: 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCD--------FSMAAGDFLQVYVHPNK---W 225
N + Q V PD++ + + SM+A DF+ +Y P++ +
Sbjct: 231 LHFSNILSREQQLRKVMIPDVHPATAMLEAQASGTPFGTMSMSAADFVVLYSSPSQTDAF 290
Query: 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSN 269
D VAT FFID A N++ +IE + N LK GIWIN+GPLL+H+ +
Sbjct: 291 DAVATVFFIDTAPNLIRYIEAVRNCLKSNGIWINVGPLLWHFED 334
|
|
| CGD|CAL0000364 orf19.592 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 75/224 (33%), Positives = 116/224 (51%)
Query: 12 SLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNS 71
++ EK + LL Y+ H +LK CI+ N +L+ + + +S P
Sbjct: 39 AMTEKERALLPWYEAHTGELKQCIEVNRGFTELLSTSIANDWGVAGTSLDWHPAGP---- 94
Query: 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLG 131
+ E TTL Q +R+WS+EG ER + IISE+ +P E + + + IL PG GLG
Sbjct: 95 REFEITSTTLLQLMREWSDEGQAERDVAFTRIISELEELYPDEP-SRQSIRILNPGCGLG 153
Query: 132 RLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMA 191
RL E+ RG+ QGNE S ML ASNFILN + + + I+P++ ++ + + +QT
Sbjct: 154 RLVMELVIRGFWTQGNEISYHMLLASNFILNHSQFPHSHSIFPFLSRSSHLVKRKYQTRG 213
Query: 192 VTFPDINT----SDYNDDCD-------FSMAAGDFLQVYVHPNK 224
+T PD+ S+ + S+ AG FL++Y PNK
Sbjct: 214 ITIPDVAPFAVLSELKEKTPSIAYEELMSITAGSFLELY-GPNK 256
|
|
| UNIPROTKB|Q59X87 CaO19.592 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 75/224 (33%), Positives = 116/224 (51%)
Query: 12 SLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNS 71
++ EK + LL Y+ H +LK CI+ N +L+ + + +S P
Sbjct: 39 AMTEKERALLPWYEAHTGELKQCIEVNRGFTELLSTSIANDWGVAGTSLDWHPAGP---- 94
Query: 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLG 131
+ E TTL Q +R+WS+EG ER + IISE+ +P E + + + IL PG GLG
Sbjct: 95 REFEITSTTLLQLMREWSDEGQAERDVAFTRIISELEELYPDEP-SRQSIRILNPGCGLG 153
Query: 132 RLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMA 191
RL E+ RG+ QGNE S ML ASNFILN + + + I+P++ ++ + + +QT
Sbjct: 154 RLVMELVIRGFWTQGNEISYHMLLASNFILNHSQFPHSHSIFPFLSRSSHLVKRKYQTRG 213
Query: 192 VTFPDINT----SDYNDDCD-------FSMAAGDFLQVYVHPNK 224
+T PD+ S+ + S+ AG FL++Y PNK
Sbjct: 214 ITIPDVAPFAVLSELKEKTPSIAYEELMSITAGSFLELY-GPNK 256
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54ST2 | U586_DICDI | No assigned EC number | 0.3825 | 0.9463 | 0.6090 | yes | N/A |
| Q5BJZ6 | CI041_RAT | No assigned EC number | 0.5319 | 0.9899 | 0.7375 | yes | N/A |
| P53934 | YNJ2_YEAST | No assigned EC number | 0.3131 | 0.8523 | 0.635 | yes | N/A |
| Q9Y7J3 | YOI7_SCHPO | No assigned EC number | 0.3883 | 0.9563 | 0.7640 | yes | N/A |
| Q8N4J0 | CI041_HUMAN | No assigned EC number | 0.5454 | 0.9899 | 0.7212 | yes | N/A |
| Q80UY1 | CI041_MOUSE | No assigned EC number | 0.5420 | 0.9899 | 0.7375 | yes | N/A |
| Q9I7X6 | U586_DROME | No assigned EC number | 0.4797 | 0.9865 | 0.6697 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 298 | |||
| pfam07942 | 268 | pfam07942, N2227, N2227-like protein | 1e-108 |
| >gnl|CDD|219653 pfam07942, N2227, N2227-like protein | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = e-108
Identities = 114/234 (48%), Positives = 147/234 (62%), Gaps = 2/234 (0%)
Query: 67 PLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVP 126
+ D+ KV++TL+Q VRDWS EG ER Y+PII E+ FP + + + ILVP
Sbjct: 5 VNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSRSHDRSKIRILVP 64
Query: 127 GAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTH 186
GAGLGRLA+E+A GY QGNEFS FML SNFILN C+E+N IYP++ N +
Sbjct: 65 GAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQLTRD 124
Query: 187 HQTMAVTFPDINTSDYND-DCDFSMAAGDFLQVYVHPNK-WDCVATCFFIDCANNIVSFI 244
Q V PD++ +FSM AGDFL+VY +D V TCFFID A+N++ +I
Sbjct: 125 DQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVVVTCFFIDTAHNVLEYI 184
Query: 245 ETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVES 298
+TI ILKPGG WINLGPLLYH+ + +E SIE S E +K++ GF E E
Sbjct: 185 DTIEKILKPGGHWINLGPLLYHFEPLPDEMSIELSLEDIKRLATKRGFKDEKEE 238
|
This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions. Length = 268 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 298 | |||
| KOG2798|consensus | 369 | 100.0 | ||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.84 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.79 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.79 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.74 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.69 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.69 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.69 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.69 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.69 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.68 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.68 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.67 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.66 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.66 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.66 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.65 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.65 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.65 | |
| KOG1540|consensus | 296 | 99.65 | ||
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.64 | |
| KOG1270|consensus | 282 | 99.63 | ||
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.63 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.62 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.61 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.61 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.61 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.6 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.59 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.58 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.57 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.57 | |
| KOG1271|consensus | 227 | 99.56 | ||
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.56 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.55 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.55 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.55 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.54 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.54 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.53 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.49 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.49 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.47 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.46 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.45 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.43 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.42 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.41 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.41 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.41 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.4 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.38 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.38 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.37 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.36 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.35 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.35 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.34 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.33 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.33 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.31 | |
| KOG4300|consensus | 252 | 99.3 | ||
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.29 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.29 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.28 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.25 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.24 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.23 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.23 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.22 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.22 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.19 | |
| KOG2361|consensus | 264 | 99.18 | ||
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.18 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.17 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.17 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.16 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.16 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.16 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.15 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.15 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.15 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.14 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.1 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.09 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.08 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.07 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.07 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.06 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.06 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.06 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.05 | |
| KOG1541|consensus | 270 | 99.04 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.03 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.03 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.03 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.01 | |
| KOG2940|consensus | 325 | 99.01 | ||
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.99 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.98 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.97 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.95 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.93 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.91 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.9 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.9 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.89 | |
| KOG3045|consensus | 325 | 98.88 | ||
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.85 | |
| PLN02366 | 308 | spermidine synthase | 98.84 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.84 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.83 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.81 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.8 | |
| KOG2899|consensus | 288 | 98.78 | ||
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.77 | |
| KOG3010|consensus | 261 | 98.77 | ||
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.75 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.72 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.7 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.69 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.68 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.68 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.68 | |
| PLN02476 | 278 | O-methyltransferase | 98.67 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.66 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.66 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.66 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.65 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.65 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.64 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.6 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.6 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.59 | |
| KOG1975|consensus | 389 | 98.58 | ||
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.58 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.57 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.57 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.54 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.5 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.5 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.49 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.49 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.48 | |
| KOG1269|consensus | 364 | 98.48 | ||
| KOG1499|consensus | 346 | 98.46 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.45 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.45 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.42 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.42 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.4 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.4 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.4 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.39 | |
| KOG1661|consensus | 237 | 98.33 | ||
| PLN02823 | 336 | spermine synthase | 98.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.3 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.29 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.28 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.26 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.21 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.2 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.2 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.18 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.18 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.18 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.06 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.04 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.98 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.97 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.96 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.95 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.95 | |
| KOG1500|consensus | 517 | 97.92 | ||
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.91 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.88 | |
| KOG3987|consensus | 288 | 97.87 | ||
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.85 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.84 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.84 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.81 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.8 | |
| KOG3178|consensus | 342 | 97.76 | ||
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.71 | |
| KOG0820|consensus | 315 | 97.7 | ||
| KOG2904|consensus | 328 | 97.68 | ||
| KOG2352|consensus | 482 | 97.63 | ||
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.6 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.6 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.58 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.53 | |
| KOG3420|consensus | 185 | 97.53 | ||
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.5 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.48 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.46 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.44 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.4 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.4 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.36 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.34 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.28 | |
| KOG3191|consensus | 209 | 97.22 | ||
| KOG1709|consensus | 271 | 97.22 | ||
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.18 | |
| KOG1663|consensus | 237 | 97.16 | ||
| KOG1331|consensus | 293 | 97.14 | ||
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.1 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.08 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.03 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.99 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.98 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.95 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.95 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.8 | |
| KOG2915|consensus | 314 | 96.74 | ||
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.64 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.52 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.5 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.48 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.35 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.31 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.18 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.09 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.84 | |
| KOG2730|consensus | 263 | 95.79 | ||
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.78 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.76 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.74 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.65 | |
| KOG0822|consensus | 649 | 95.54 | ||
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.51 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.47 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 95.29 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.27 | |
| KOG3201|consensus | 201 | 95.25 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.2 | |
| KOG1562|consensus | 337 | 95.08 | ||
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.05 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.88 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.83 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.81 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.74 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.59 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.57 | |
| KOG1501|consensus | 636 | 94.52 | ||
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.32 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.2 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.2 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.11 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.97 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.96 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.84 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.77 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.56 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.49 | |
| KOG4058|consensus | 199 | 93.42 | ||
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.35 | |
| KOG2872|consensus | 359 | 93.33 | ||
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.23 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 93.05 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 93.04 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.97 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 92.88 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.84 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.75 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.67 | |
| KOG2187|consensus | 534 | 92.54 | ||
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.43 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 92.1 | |
| PHA01634 | 156 | hypothetical protein | 92.08 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 91.89 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 91.83 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 91.58 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.5 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 91.23 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.19 | |
| KOG2651|consensus | 476 | 91.18 | ||
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 91.15 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 91.13 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 90.95 | |
| PRK13699 | 227 | putative methylase; Provisional | 90.93 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.93 | |
| KOG3115|consensus | 249 | 90.87 | ||
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 90.87 | |
| PLN02494 | 477 | adenosylhomocysteinase | 90.85 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 90.59 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 90.48 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.47 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 90.34 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 90.34 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 90.27 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 90.15 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 89.74 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 89.61 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 89.57 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.52 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 89.29 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.28 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 89.27 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.1 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 89.04 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 88.96 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 88.69 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 88.42 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 88.2 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 87.69 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 87.65 | |
| KOG2920|consensus | 282 | 87.6 | ||
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 87.48 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 87.47 | |
| KOG1596|consensus | 317 | 87.37 | ||
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 86.96 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 86.95 | |
| KOG1201|consensus | 300 | 86.94 | ||
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 86.83 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.69 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 86.67 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 86.67 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 86.64 | |
| KOG0023|consensus | 360 | 86.62 | ||
| PLN02712 | 667 | arogenate dehydrogenase | 86.49 | |
| KOG2671|consensus | 421 | 86.34 | ||
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 86.3 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.25 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 86.25 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 86.16 | |
| PLN02712 | 667 | arogenate dehydrogenase | 86.13 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 85.92 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 85.81 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 85.68 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 85.49 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 85.45 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 85.34 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 85.33 | |
| KOG2793|consensus | 248 | 85.29 | ||
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.1 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.04 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 84.75 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 84.53 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 84.45 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 84.31 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 84.29 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 84.23 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 84.18 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 84.04 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.02 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 84.02 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 83.58 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 83.55 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 83.47 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 83.36 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 83.19 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 83.14 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 83.11 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 83.03 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 82.96 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 82.89 | |
| PLN02256 | 304 | arogenate dehydrogenase | 82.75 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 82.66 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.57 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.53 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 82.51 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 82.4 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 82.25 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 82.19 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 81.75 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 81.35 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 81.33 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 81.32 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 81.09 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.87 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 80.73 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 80.49 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 80.25 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 80.24 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 80.21 |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-79 Score=554.68 Aligned_cols=294 Identities=44% Similarity=0.786 Sum_probs=271.2
Q ss_pred hhhhHHHHHhcCcHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcchHHHHHHH
Q psy3185 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNSTDLEKVQTTL 81 (298)
Q Consensus 2 ~~~r~~~~~~~l~~~~~~ll~~y~~~l~~~~~~i~~N~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 81 (298)
++.|+++....+|.+||++|.+|.++|+.++.||++|+.++++|++.+...|... +... .....+++-+|.||.++|
T Consensus 36 ~l~~~~~~~n~~s~d~q~~l~~f~k~l~n~k~~I~~N~~v~r~Ia~~~~~~f~ed-~~~~--~~~~~~n~~~m~kv~s~l 112 (369)
T KOG2798|consen 36 LLFRRRRQLNGISEDHQQLLGNFTKHLKNNKGCIEENSRVIRAIAEECPFEFTED-HDQK--GELAQVNPDFMSKVSSTL 112 (369)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHhhCccccchh-hhcc--cceecCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999766666542 1111 124556667899999999
Q ss_pred HHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHH
Q psy3185 82 KQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 82 ~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
+|++||||+||..||+++|.||+++|..++|+....+.+.+||+||||+||||++||..||.|+|+|+|++|+.++.|+|
T Consensus 113 ~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiL 192 (369)
T KOG2798|consen 113 KQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFIL 192 (369)
T ss_pred HHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCC-CCCCCCCeeEEeccccccccCC---CceeEEEecccccCc
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS-DYNDDCDFSMAAGDFLQVYVHP---NKWDCVATCFFIDCA 237 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~-~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t~ffidta 237 (298)
|.++..++++||||||++||+++.+||+||+++||+.|. ..+..+.++|++|||+++|... +.||+|+||||||||
T Consensus 193 N~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa 272 (369)
T KOG2798|consen 193 NYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA 272 (369)
T ss_pred HhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech
Confidence 999999999999999999999999999999999999997 4555688999999999999754 489999999999999
Q ss_pred chHHHHHHHHHHhccCCeEEEEeccccccccCCCC---CCccCCCHHHHHHHHHhCCCEEEEeC
Q psy3185 238 NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN---EDSIEPSYEVVKQVIQGLGFVYEVES 298 (298)
Q Consensus 238 ~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~---~~~~~ls~eEl~~~~~~~GF~i~~~~ 298 (298)
+|+.+||++|+++|||||+|||+|||+|||++..+ +++++||.|+|..+++..||++++++
T Consensus 273 ~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 273 HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999999999999999999999999999998654 78999999999999999999999874
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=520.10 Aligned_cols=231 Identities=53% Similarity=0.945 Sum_probs=218.2
Q ss_pred CCCCcchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEe
Q psy3185 68 LPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGN 147 (298)
Q Consensus 68 ~~~~~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~ 147 (298)
.++..|++||+++|+|++||||++|+.||+++|+||++.|.+++|....++++.+||+||||+||||+|||++||.|+||
T Consensus 5 ~~~~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gn 84 (270)
T PF07942_consen 5 HPSPSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGN 84 (270)
T ss_pred cCchhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEE
Confidence 45568999999999999999999999999999999999999999965556778999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC-CCCCCCeeEEeccccccccCC---C
Q psy3185 148 EFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD-YNDDCDFSMAAGDFLQVYVHP---N 223 (298)
Q Consensus 148 D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~-~~~~~~~~~~~gDf~~~~~~~---~ 223 (298)
|+|+.|+.+++|+||.+.+.++++||||+|++||+.++++|+|+++|||+.|.. ++...+++|++|||+++|.++ +
T Consensus 85 E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~ 164 (270)
T PF07942_consen 85 EFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKG 164 (270)
T ss_pred EchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCC
Confidence 999999999999999999999999999999999999999999999999999875 455689999999999999876 8
Q ss_pred ceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC--CCCCccCCCHHHHHHHHHhCCCEEEEeC
Q psy3185 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM--LNEDSIEPSYEVVKQVIQGLGFVYEVES 298 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~--~~~~~~~ls~eEl~~~~~~~GF~i~~~~ 298 (298)
+||+|+||||||||+|+.+||++|+++|||||+|||+|||+||+++. +++.+++||+|||++++++.||++++++
T Consensus 165 ~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 165 SFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred cccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999976 5667899999999999999999999864
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-20 Score=163.74 Aligned_cols=176 Identities=22% Similarity=0.271 Sum_probs=131.0
Q ss_pred chHHHHHHHHHHHhhhccCC-----hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEE
Q psy3185 73 DLEKVQTTLKQFVRDWSEEG-----SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQ 145 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~g-----~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~ 145 (298)
....|.+.+..++.-++.-. ...|. +-+.+.+.... .++.+|||+|||||.+|..+++.. .+|+
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~-----Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~ 79 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRL-----WRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVV 79 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHH-----HHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEE
Confidence 34677777777777666422 22332 45555555432 257899999999999999999985 6899
Q ss_pred EeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCce
Q psy3185 146 GNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKW 225 (298)
Q Consensus 146 g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~f 225 (298)
|+|+|..||..++..+. + .. ..+++++.||+.++++++++|
T Consensus 80 ~~D~s~~ML~~a~~k~~---~------------------------------~~------~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 80 GLDISESMLEVAREKLK---K------------------------------KG------VQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred EEECCHHHHHHHHHHhh---c------------------------------cC------ccceEEEEechhhCCCCCCcc
Confidence 99999999999987322 1 01 124899999999999999999
Q ss_pred eEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-------ccc--ccc---cc-CCC--------C-------CCc--
Q psy3185 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-------GPL--LYH---YS-NML--------N-------EDS-- 275 (298)
Q Consensus 226 D~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-------gPl--~y~---~~-~~~--------~-------~~~-- 275 (298)
|+|..+|-|....++..+|++++|+|||||.++.+ +++ .|+ +. -.| + ..+
T Consensus 121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 99999999999999999999999999999988753 111 011 11 000 0 112
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
-.++.+++.+++++.||+.+.
T Consensus 201 ~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 201 RFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hCCCHHHHHHHHHhcCceEEe
Confidence 237899999999999999764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-20 Score=164.06 Aligned_cols=139 Identities=27% Similarity=0.343 Sum_probs=79.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||||.++..++++ | ..|+|+|+|+.||..++..+...
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------------------------------- 95 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------------------------------- 95 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------------------------------
Confidence 4679999999999999999986 3 57999999999999998743320
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec---c---c---cc-
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG---P---L---LY- 265 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g---P---l---~y- 265 (298)
...++.++.||+.+++.++++||+|+++|.|.+.+|+...+++++|+|||||.++.+. | + .|
T Consensus 96 --------~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~ 167 (233)
T PF01209_consen 96 --------GLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYK 167 (233)
T ss_dssp --------T--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHH
T ss_pred --------CCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceee
Confidence 0137899999999999989999999999999999999999999999999999987431 1 1 11
Q ss_pred --cccCCC--------C-------CCcc--CCCHHHHHHHHHhCCCEEEE
Q psy3185 266 --HYSNML--------N-------EDSI--EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 --~~~~~~--------~-------~~~~--~ls~eEl~~~~~~~GF~i~~ 296 (298)
-..-.| + ..++ ..+.+|+.++++++||+.++
T Consensus 168 ~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~ 217 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVE 217 (233)
T ss_dssp H-------------------------------------------------
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0 1233 26789999999999998653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=157.49 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|+++..++++ | ..|+|+|+|+.|+..++...+....
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~----------------------------- 123 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK----------------------------- 123 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-----------------------------
Confidence 4679999999999999999986 4 4799999999999988753211000
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec--c-------cccc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG--P-------LLYH 266 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g--P-------l~y~ 266 (298)
....++.+..+|+.+++.++++||+|++.+.+++.+++..++++++++|||||.++... + .++.
T Consensus 124 -------~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~ 196 (261)
T PLN02233 124 -------SCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE 196 (261)
T ss_pred -------ccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHH
Confidence 00136889999999988788999999999999999999999999999999999986431 1 0100
Q ss_pred c--cC----C----CCC---------CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 Y--SN----M----LNE---------DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~--~~----~----~~~---------~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+ .. . ... ....+|.+|+.++++++||+.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~ 245 (261)
T PLN02233 197 WMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAK 245 (261)
T ss_pred HHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEE
Confidence 0 00 0 000 02247999999999999999764
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=147.56 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=100.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.|++|+|+|+|+.|+.. . ..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-~----~~---------------------------------- 62 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-R----NV---------------------------------- 62 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-T----TS----------------------------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-h----hh----------------------------------
Confidence 57899999999999999999999999999999999876 0 00
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccc----------ccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLY----------HYS 268 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y----------~~~ 268 (298)
..... +.......+++||+|+++..|++.+|+..+|+.|+++|||||+++...|..+ .+.
T Consensus 63 --------~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 132 (161)
T PF13489_consen 63 --------VFDNF--DAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYD 132 (161)
T ss_dssp --------EEEEE--ECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGT
T ss_pred --------hhhhh--hhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCc
Confidence 00000 0012223568999999999999999999999999999999999987666532 221
Q ss_pred CCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 269 NMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 269 ~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
...+.....++.+++..+++++||++++|
T Consensus 133 ~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 133 RPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp CHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred CccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 11113345689999999999999999975
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=151.95 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=100.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..||++|++|+|+|+|+.|+..++......
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~---------------------------------- 75 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE---------------------------------- 75 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc----------------------------------
Confidence 3579999999999999999999999999999999999888643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCcc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSI 276 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~ 276 (298)
.+ .++.+..+|+.++.. +++||+|++.++++.. .+...+++.++++|||||+++.+..+.......+..+..
T Consensus 76 --~~---~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 149 (197)
T PRK11207 76 --NL---DNLHTAVVDLNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPF 149 (197)
T ss_pred --CC---CcceEEecChhhCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCC
Confidence 00 135566777766543 4679999988766533 467899999999999999965432211110011123557
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++.+|+.+.++ ||+++.
T Consensus 150 ~~~~~el~~~~~--~~~~~~ 167 (197)
T PRK11207 150 AFKEGELRRYYE--GWEMVK 167 (197)
T ss_pred ccCHHHHHHHhC--CCeEEE
Confidence 789999999996 999875
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-18 Score=153.18 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=127.8
Q ss_pred chHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHH
Q psy3185 73 DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~ 152 (298)
|..+|...+...+..|......+| .+.+.|.+.++. .+..+|||+|||+|.++..+++.|..|+|+|+|+.
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~~q~-----~~a~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~ 75 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAELQR-----QSADALLAMLPQ----RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP 75 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHhcCc----cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH
Confidence 456788888888888876444444 366777777663 24578999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc
Q psy3185 153 MLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF 232 (298)
Q Consensus 153 Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f 232 (298)
|+..++... ....++.+|+.+++..+++||+|++.+
T Consensus 76 ~l~~a~~~~--------------------------------------------~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 76 MLAQARQKD--------------------------------------------AADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHHHHHhhC--------------------------------------------CCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 999876510 012356778877766678999999999
Q ss_pred cccCcchHHHHHHHHHHhccCCeEEEEecccc---------ccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 233 FIDCANNIVSFIETIFNILKPGGIWINLGPLL---------YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 233 fidta~n~~~yl~~I~~~LkpGG~~In~gPl~---------y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+++..++...+.+++++|||||.++...+.. |...+......-.++.+++..++...||+...
T Consensus 112 ~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 112 AVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred hhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 99999999999999999999999998543221 10001011122347899999999988887643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-18 Score=157.88 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=127.2
Q ss_pred HHHHHHHHhhhc-cCChHHH-----hhhhHHHHHHHHhhCCCCC---CCCCCCeEEEecccCcHHHHHHHHcCCeEEEee
Q psy3185 78 QTTLKQFVRDWS-EEGSEER-----KTCYEPIISEILARFPPET---INPKDVNILVPGAGLGRLAFEIARRGYVCQGNE 148 (298)
Q Consensus 78 ~~~l~~~~RdWs-~~g~~ER-----~~~~~~i~~~l~~~~p~~~---~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D 148 (298)
...+.+++.+|- .+|.-.. ......|.+.+.++++... ...++.+|||+|||+|.++..||+.|++|+|+|
T Consensus 81 ~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID 160 (322)
T PLN02396 81 LAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGATVTGVD 160 (322)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEe
Confidence 346677777874 4453111 0012234455555554211 112456999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEE
Q psy3185 149 FSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCV 228 (298)
Q Consensus 149 ~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V 228 (298)
.|+.|+..++..... . +...++.+..+|+.++...+++||+|
T Consensus 161 ~s~~~i~~Ar~~~~~----------------------------------~----~~~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 161 AVDKNVKIARLHADM----------------------------------D----PVTSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCHHHHHHHHHHHHh----------------------------------c----CcccceeEEecCHHHhhhccCCCCEE
Confidence 999999988752110 0 00136788999998887667899999
Q ss_pred EecccccCcchHHHHHHHHHHhccCCeEEEEeccc----cc---------cccCCCC-C--CccCCCHHHHHHHHHhCCC
Q psy3185 229 ATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL----LY---------HYSNMLN-E--DSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 229 ~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl----~y---------~~~~~~~-~--~~~~ls~eEl~~~~~~~GF 292 (298)
++...|++..+...+++++.++|||||.++...+- .| .....+. . ..-.++.+|+.+++++.||
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999843221 11 1100111 1 1224799999999999999
Q ss_pred EEEEe
Q psy3185 293 VYEVE 297 (298)
Q Consensus 293 ~i~~~ 297 (298)
+++..
T Consensus 283 ~i~~~ 287 (322)
T PLN02396 283 DVKEM 287 (322)
T ss_pred eEEEE
Confidence 99753
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-18 Score=152.78 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=108.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++++|.+|+|+|+|+.|+..|+..... .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~---~------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEA---K------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---c-------------------------------
Confidence 357999999999999999999999999999999999998874321 0
Q ss_pred CCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe----ccccc--------
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL----GPLLY-------- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~----gPl~y-------- 265 (298)
....++.++.+|+.++. ..+++||+|++...+++.+++..+++++.++|||||+++.. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~ 165 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNF 165 (255)
T ss_pred ----CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccCh
Confidence 00136788889987764 24689999999999998889999999999999999998632 11100
Q ss_pred cc--cCC------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 HY--SNM------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 ~~--~~~------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+. ... ...+...++.+++.+++++.||+++..
T Consensus 166 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 166 DYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred HHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeee
Confidence 00 000 012345689999999999999999753
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=148.37 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=100.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..|+++ +..|+|+|+|+.|+..++.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------------- 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------------- 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 4679999999999999999998 6789999999999987753
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc----cc------
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL----YH------ 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~----y~------ 266 (298)
.++.+..+|+.++. .+++||+|++.+.+++.++....+++++++|||||.++...|-. ++
T Consensus 72 ---------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 141 (255)
T PRK14103 72 ---------RGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRAL 141 (255)
T ss_pred ---------cCCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHH
Confidence 13456778887764 46799999999999999999999999999999999997432210 00
Q ss_pred -----ccCC-CC----CCccCCCHHHHHHHHHhCCCEEE
Q psy3185 267 -----YSNM-LN----EDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 267 -----~~~~-~~----~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+... .. ......+.+++.++++++||++.
T Consensus 142 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 180 (255)
T PRK14103 142 ARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVD 180 (255)
T ss_pred hccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEE
Confidence 0000 00 01234689999999999999864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=126.07 Aligned_cols=93 Identities=28% Similarity=0.383 Sum_probs=79.4
Q ss_pred EEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCC
Q psy3185 124 LVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDY 202 (298)
Q Consensus 124 LdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~ 202 (298)
||+|||+|+.+..|+++ +.+|+|+|+|+.|+..++....
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 8899999999999998887321
Q ss_pred CCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 203 NDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 203 ~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.....+..+|+.+++.++++||+|++...+++.++...++++|+|+|||||+++
T Consensus 41 --~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 124558899999998889999999999998888999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=140.34 Aligned_cols=131 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..||++|+.|+|+|+|+.|+..++..... . .
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~---~-~------------------------------ 76 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAR---E-N------------------------------ 76 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHH---h-C------------------------------
Confidence 56999999999999999999999999999999999988763321 0 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccC-C--CCCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSN-M--LNED 274 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~-~--~~~~ 274 (298)
.++....+|+..... +++||+|++.+.++.. .++..+++.++++|||||+++.+. |...+ . +...
T Consensus 77 ------~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~---~~~~~~~~~~~~~ 146 (195)
T TIGR00477 77 ------LPLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA---AMDTADYPCHMPF 146 (195)
T ss_pred ------CCceeEeccchhccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE---ecccCCCCCCCCc
Confidence 123344555544332 4689999988766543 567899999999999999854321 11110 0 1123
Q ss_pred ccCCCHHHHHHHHHhCCCEEEE
Q psy3185 275 SIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...++.+||.+++. +|+++.
T Consensus 147 ~~~~~~~el~~~f~--~~~~~~ 166 (195)
T TIGR00477 147 SFTFKEDELRQYYA--DWELLK 166 (195)
T ss_pred CccCCHHHHHHHhC--CCeEEE
Confidence 56799999999985 588765
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=143.15 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCC
Q psy3185 74 LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFS 150 (298)
Q Consensus 74 ~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S 150 (298)
..+|+..+..++..|..-....--..+....+.+.+.++. .++.+|||+|||+|.++..+++. +..|+|+|+|
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 79 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV----QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS 79 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC
Confidence 3567777777777777521110000011122333333332 24679999999999999999976 3589999999
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
+.|+..++..+... . ..++.++.+|+.++..++++||+|++
T Consensus 80 ~~~~~~a~~~~~~~------------------------------------~---~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 80 ENMLSVGRQKVKDA------------------------------------G---LHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred HHHHHHHHHHHHhc------------------------------------C---CCceEEEEechhcCCCCCCCccEEEE
Confidence 99999887643210 0 13677888998887666789999999
Q ss_pred cccccCcchHHHHHHHHHHhccCCeEEEEeccc---c------cc--ccC-CC-----------------CCCccCCCHH
Q psy3185 231 CFFIDCANNIVSFIETIFNILKPGGIWINLGPL---L------YH--YSN-ML-----------------NEDSIEPSYE 281 (298)
Q Consensus 231 ~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl---~------y~--~~~-~~-----------------~~~~~~ls~e 281 (298)
.+.+++.++....++++.++|||||.++...+. . |. +.. .+ ....-.++.+
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMD 200 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999753221 0 00 000 00 0001136789
Q ss_pred HHHHHHHhCCCEEEE
Q psy3185 282 VVKQVIQGLGFVYEV 296 (298)
Q Consensus 282 El~~~~~~~GF~i~~ 296 (298)
|+.++++++||+.++
T Consensus 201 ~l~~~l~~aGf~~~~ 215 (231)
T TIGR02752 201 ELAEMFQEAGFKDVE 215 (231)
T ss_pred HHHHHHHHcCCCeeE
Confidence 999999999999764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=149.32 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=108.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..|+++ |.+|+|+|+|+.|+..++......
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 4679999999999999999987 789999999999999887743210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML------ 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~------ 271 (298)
....++.+..+|+.+++.++++||+|++...+++.++...++++++++|||||.++......-......
T Consensus 165 -----g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~ 239 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPD 239 (340)
T ss_pred -----CCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHH
Confidence 001368899999998877789999999999999999999999999999999999875432100000000
Q ss_pred ---------C--CCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 272 ---------N--EDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 272 ---------~--~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
. ......+.+++.++++++||+.+..
T Consensus 240 ~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 240 EQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 0 0011248999999999999998753
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=124.80 Aligned_cols=102 Identities=24% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|+++.++++ .|.+|+|+|+|+.|+..++......
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 48 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--------------------------------- 48 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc---------------------------------
Confidence 57999999999999999999 7899999999999999998743110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCc---chHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCA---NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta---~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.......+.||+|++.. .++.. ++..++++.+.+.|||||+++.
T Consensus 49 -----~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 49 -----GLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp -----TTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----CCCCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 112589999999922222356799998877 23322 5678899999999999999974
|
... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-17 Score=143.54 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=105.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+.+|||+|||-|-|+..+|+.|+.|+|+|.|+.|+..|+. ++.+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~---ha~e~------------------------------ 104 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKL---HALES------------------------------ 104 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHH---hhhhc------------------------------
Confidence 368899999999999999999999999999999999999886 32210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe----cccccccc-----
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL----GPLLYHYS----- 268 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~----gPl~y~~~----- 268 (298)
..++.+.++...++-...++||+|+|.-+|.+.+|+..+++++.+++||||+.+.. .+..|...
T Consensus 105 -------gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae 177 (243)
T COG2227 105 -------GVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAE 177 (243)
T ss_pred -------cccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHH
Confidence 12344555555555444589999999999999999999999999999999998633 33222111
Q ss_pred ----CCCC---CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 269 ----NMLN---EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 ----~~~~---~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|. ...--+-++|+..++...||++..
T Consensus 178 ~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 178 YVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred HHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 1111 112236789999999998998865
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-16 Score=145.97 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..++..|.. |+|+|.|+.|+..++.+....
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~--------------------------------- 168 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL--------------------------------- 168 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc---------------------------------
Confidence 4679999999999999999999864 999999999997665432110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc-----------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH----------- 266 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~----------- 266 (298)
....++.+..+|+.+++. +++||+|++...+++..++..+++.++++|||||.+|.-......
T Consensus 169 -----~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~ 242 (322)
T PRK15068 169 -----GNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDR 242 (322)
T ss_pred -----CCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhH
Confidence 001367888899988866 789999999888888899999999999999999999742211000
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.... ......|.+++..+++++||+.++
T Consensus 243 y~~~~-~~~~lps~~~l~~~L~~aGF~~i~ 271 (322)
T PRK15068 243 YAKMR-NVYFIPSVPALKNWLERAGFKDVR 271 (322)
T ss_pred HhcCc-cceeCCCHHHHHHHHHHcCCceEE
Confidence 10000 012235899999999999999875
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=133.72 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=95.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
|....+.+.++. .++.++||+|||.||.|..||++||+|+|+|.|+..+...+.+..+ .
T Consensus 17 ~~hs~v~~a~~~----~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~-~---------------- 75 (192)
T PF03848_consen 17 PTHSEVLEAVPL----LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE-E---------------- 75 (192)
T ss_dssp ---HHHHHHCTT----S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH-T----------------
T ss_pred CCcHHHHHHHhh----cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh-c----------------
Confidence 444555555543 2468999999999999999999999999999999999877664332 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+.++.....|+.+... ++.||+|++. .|++ .+.+...++.|...++|||+.+
T Consensus 76 -----------------------~l~i~~~~~Dl~~~~~-~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 76 -----------------------GLDIRTRVADLNDFDF-PEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp -----------------------T-TEEEEE-BGCCBS--TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEE
T ss_pred -----------------------CceeEEEEecchhccc-cCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEE
Confidence 1246677788877654 4789999863 3454 5678889999999999999976
Q ss_pred EeccccccccCCC--CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 259 NLGPLLYHYSNML--NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 259 n~gPl~y~~~~~~--~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..... ...+.+ .++..-+...||.+... ||+|++
T Consensus 131 i~~~~--~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 131 IVTFM--ETPDYPCPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp EEEEB----SSS--SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred EEEec--ccCCCCCCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 43221 111111 22345577889999874 799875
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-16 Score=143.70 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..||++|++|+|+|.|+.|+..++..... .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~---~-------------------------------- 165 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK---E-------------------------------- 165 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---c--------------------------------
Confidence 45999999999999999999999999999999999988764321 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
..++.+..+|+..... +++||+|++.++++. .+++..+++.++++|||||+++.+.+..-.....+......
T Consensus 166 -----~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~ 239 (287)
T PRK12335 166 -----NLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFT 239 (287)
T ss_pred -----CCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcc
Confidence 0145566667665433 678999998876653 34788999999999999999664433221111111123456
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
++.+||++++. +|++++
T Consensus 240 ~~~~el~~~~~--~~~i~~ 256 (287)
T PRK12335 240 FKEGELKDYYQ--DWEIVK 256 (287)
T ss_pred cCHHHHHHHhC--CCEEEE
Confidence 89999999985 488875
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=139.63 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=102.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|..+..|++. |.+|+|+|+|+.|+..++....
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~----------------------------------- 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----------------------------------- 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-----------------------------------
Confidence 4679999999999999999875 7899999999999998876211
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCC-----
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNM----- 270 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~----- 270 (298)
...++.+..+|+.+.+.++++||+|++...+.+. .+...++++++++|||||.++...+..-.....
T Consensus 97 ------~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~ 170 (263)
T PTZ00098 97 ------DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFK 170 (263)
T ss_pred ------cCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHH
Confidence 0136778889988776667899999986544333 478899999999999999998654321100000
Q ss_pred ---CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 ---LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ---~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....-.++.+++.++++++||+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 171 AYIKKRKYTLIPIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHCCCCeee
Confidence 00112236899999999999999864
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=134.18 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=96.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||||||.||.+..||++|++|+|+|+|+.++..+.. +.. ... ...+ ..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~----~~~------------~~~~-----~~~~~ 89 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENG----LTP------------TVTQ-----QGEFT 89 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcC----CCc------------ceec-----cccce
Confidence 35799999999999999999999999999999999986432 100 000 0000 00000
Q ss_pred CCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.....++++.++||.++... .++||.|+-+-++.+. +....|++.|.++|||||+++-++= .+... ....+.
T Consensus 90 ---~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~-~~~~~-~~~gpp 164 (213)
T TIGR03840 90 ---RYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL-DYDQS-EMAGPP 164 (213)
T ss_pred ---eeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE-EcCCC-CCCCcC
Confidence 00124788999999987643 3679988765433322 3346799999999999997553210 11111 112355
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+||.+++.. +|+|+.
T Consensus 165 ~~~~~~eL~~~f~~-~~~i~~ 184 (213)
T TIGR03840 165 FSVSPAEVEALYGG-HYEIEL 184 (213)
T ss_pred CCCCHHHHHHHhcC-CceEEE
Confidence 67999999999963 566653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=135.69 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
..+.+.+.+.+..+ .++.+|||||||.|+.+..||++|++|+|+|+|+..+..+.. ..... +
T Consensus 22 p~~~L~~~~~~~~~-----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~--~~~l~-------~---- 83 (218)
T PRK13255 22 VNPLLQKYWPALAL-----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA--ENGLT-------P---- 83 (218)
T ss_pred CCHHHHHHHHhhCC-----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH--HcCCC-------c----
Confidence 34455565544322 135799999999999999999999999999999999986432 01000 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC-CceeEEEeccc-cc-CcchHHHHHHHHHHhccCCe
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCFF-ID-CANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ff-id-ta~n~~~yl~~I~~~LkpGG 255 (298)
+..+..........++++.++|+.++.... +.||.|.-.-+ ++ ..+....|++.|.++|||||
T Consensus 84 --------------~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 84 --------------QTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred --------------cccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 000000000011247889999999885432 68998875433 23 23345789999999999998
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+++.++ +.|. .+....+...++.+||.+++.. +|+|+.
T Consensus 150 ~~~l~~-~~~~-~~~~~gPp~~~~~~el~~~~~~-~~~i~~ 187 (218)
T PRK13255 150 RGLLVT-LDYP-QEELAGPPFSVSDEEVEALYAG-CFEIEL 187 (218)
T ss_pred eEEEEE-EEeC-CccCCCCCCCCCHHHHHHHhcC-CceEEE
Confidence 654221 1121 1112345568999999999953 466653
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=137.68 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=101.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++...
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 4679999999999999999987 578999999999998876510
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc----------
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH---------- 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~---------- 266 (298)
.++.+..+|+.++. .+++||+|++.+.+++..+...++++++++|||||.++...|-.+.
T Consensus 76 ---------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 145 (258)
T PRK01683 76 ---------PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREV 145 (258)
T ss_pred ---------CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 14556777877664 3569999999999999999999999999999999999764432110
Q ss_pred -----cc----CCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 -----YS----NMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 -----~~----~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+. ..........+.+++..++.+.||.+..
T Consensus 146 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 146 AENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDI 184 (258)
T ss_pred HccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceee
Confidence 00 0000123446788999999999987643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=140.40 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=101.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..++..|. .|+|+|.|..|+..++.+.....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-------------------------------- 168 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-------------------------------- 168 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc--------------------------------
Confidence 467999999999999999999987 59999999999976554321100
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccC---CC---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSN---ML--- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~---~~--- 271 (298)
...++.+..+++.++.. .++||+|++...+.+..++..+|++++++|||||.+|......-+..+ .+
T Consensus 169 ------~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 169 ------NDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred ------cCCCeEEEECCHHHCCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH
Confidence 01245566677777653 458999999998999999999999999999999999842111100000 00
Q ss_pred ----CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
......+|.+++..+++++||+.++
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 0112346899999999999999875
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=135.94 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHhhhccC------ChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEE
Q psy3185 73 DLEKVQTTLKQFVRDWSEE------GSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQ 145 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~------g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~ 145 (298)
....|++.+..+++.|+.. |...+ .-..+++.+....+ ++.+|||+|||||.++..|++. |.+|+
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~--wr~~~~~~l~~~~~------~~~~VLDlGcGtG~~~~~l~~~~~~~v~ 78 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVR--WRAELVKTILKYCG------RPKKVLDVAAGKGELSYHFKKVFKYYVV 78 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHH--HHHHHHHHHHHhcC------CCCeEEEEcCCCCHHHHHHHHhcCCEEE
Confidence 3456778888887777642 22221 11235555555443 2569999999999999999998 68999
Q ss_pred EeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCce
Q psy3185 146 GNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKW 225 (298)
Q Consensus 146 g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~f 225 (298)
|+|+|+.|+..++. + ...+.+|+..++.++++|
T Consensus 79 gvD~S~~Ml~~a~~---~--------------------------------------------~~~~~~d~~~lp~~d~sf 111 (226)
T PRK05785 79 ALDYAENMLKMNLV---A--------------------------------------------DDKVVGSFEALPFRDKSF 111 (226)
T ss_pred EECCCHHHHHHHHh---c--------------------------------------------cceEEechhhCCCCCCCE
Confidence 99999999998764 1 013567788887788999
Q ss_pred eEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 226 D~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
|+|++.|.|++.+++...+++++|+|||++.++-+
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCceEEEEe
Confidence 99999999999999999999999999996545433
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=135.76 Aligned_cols=136 Identities=16% Similarity=0.238 Sum_probs=99.6
Q ss_pred CCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
++.+|||+|||+|.++..+++ .+..|+|+|+|+.|+..++..+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 367999999999999999887 2578999999999999988743210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccc---------
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPL--------- 263 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl--------- 263 (298)
....++.++.+|+.+++. +.+|+|++++.++..+ +...++++|+++|||||.++.....
T Consensus 106 --------~~~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~ 175 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175 (247)
T ss_pred --------CCCCCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH
Confidence 001368889999988753 4599999887766543 4578999999999999999864321
Q ss_pred -c---cc-c---cCCC-----------CCCccCCCHHHHHHHHHhCCCEE
Q psy3185 264 -L---YH-Y---SNML-----------NEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 264 -~---y~-~---~~~~-----------~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
. |+ + .... .......|.++..++++++||+-
T Consensus 176 ~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchh
Confidence 1 11 0 0000 01223479999999999999974
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=133.90 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=102.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
++.+|||+|||+|.++..++++ +.+|+|+|+|+.|+..|+..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4679999999999999999985 568999999999999988743210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEecccc--------
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLL-------- 264 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~-------- 264 (298)
....++.++.+|+.++.. ..+|+|++.+.++..+ +...++++++++|||||.++...|..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~ 172 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 172 (239)
T ss_pred --------CCCCCeEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH
Confidence 011367889999988754 3589998888777653 56789999999999999998764421
Q ss_pred -----cc-c--cCCCC------------CCccCCCHHHHHHHHHhCCCEEE
Q psy3185 265 -----YH-Y--SNMLN------------EDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 265 -----y~-~--~~~~~------------~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|. + ..... .....+|.+|+.++++++||..+
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~ 223 (239)
T TIGR00740 173 LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHV 223 (239)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchH
Confidence 10 0 00000 12235799999999999999753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=134.45 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=98.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+.+|||||||.|..+..||.+|++|+|+|+|+..+..+..- +... |=+. .++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e--~~~~-------~~~~---------------~~~~~~ 92 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE--NNLE-------PTVT---------------SVGGFK 92 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH--CTTE-------EECT---------------TCTTEE
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH--hccC-------CCcc---------------ccccee
Confidence 457999999999999999999999999999999998876331 1000 0000 000000
Q ss_pred CCCCCCCCCeeEEeccccccccCC-CceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.....++++.+|||.++.... ++||+|.=+-++. ......+|.+.+.++|||||.++-+. +.|...... .|.
T Consensus 93 ---~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~-l~~~~~~~~-GPP 167 (218)
T PF05724_consen 93 ---RYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT-LEYPQGEME-GPP 167 (218)
T ss_dssp ---EETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE-EES-CSCSS-SSS
T ss_pred ---eecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE-EEcCCcCCC-CcC
Confidence 001258999999999987544 6899998653322 34557789999999999999954222 344433222 467
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+||.+++. .+|+|+.
T Consensus 168 f~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 168 FSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp ----HHHHHHHHT-TTEEEEE
T ss_pred CCCCHHHHHHHhc-CCcEEEE
Confidence 7789999999997 7999875
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=141.62 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=105.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++....
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------------------------------- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------------------------- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh----------------------------------
Confidence 4679999999999999999875 4689999999999998775210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc---ccccCCCCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL---YHYSNMLNE 273 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~---y~~~~~~~~ 273 (298)
..++.+..+|+.++..++++||+|+++..+++.++....+++++++|||||.++..+|.. |........
T Consensus 159 --------~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~ 230 (340)
T PLN02490 159 --------LKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADV 230 (340)
T ss_pred --------ccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhh
Confidence 024567889988876667899999999888888889999999999999999987666532 111000000
Q ss_pred CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+.+|+.++++++||+.+.
T Consensus 231 ~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 231 WMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hccCCCHHHHHHHHHHCCCeEEE
Confidence 11235899999999999999764
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=133.59 Aligned_cols=142 Identities=23% Similarity=0.354 Sum_probs=110.6
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC--------CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG--------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQT 189 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G--------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~ 189 (298)
..+.++||++||||-+|+-|.+.- -.|+..|+|++||..++.. +.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR---a~~~---------------------- 153 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR---AKKR---------------------- 153 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH---Hhhc----------------------
Confidence 457899999999999999998762 4699999999999998773 2110
Q ss_pred cccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-------cc
Q psy3185 190 MAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-------GP 262 (298)
Q Consensus 190 r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-------gP 262 (298)
.+.....+.++.||..++++++++||+.+.+|-|....++...+++.||+|||||.+..+ .|
T Consensus 154 -----------~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~ 222 (296)
T KOG1540|consen 154 -----------PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEP 222 (296)
T ss_pred -----------CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHH
Confidence 111223588999999999999999999999999999999999999999999999998632 24
Q ss_pred ccccccC-----CCC---------------CCccC--CCHHHHHHHHHhCCCEEE
Q psy3185 263 LLYHYSN-----MLN---------------EDSIE--PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 263 l~y~~~~-----~~~---------------~~~~~--ls~eEl~~~~~~~GF~i~ 295 (298)
+.|.+.. .+. ..|++ ++.||+..+++.+||...
T Consensus 223 l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~ 277 (296)
T KOG1540|consen 223 LKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSV 277 (296)
T ss_pred HHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccc
Confidence 4332211 110 12333 788999999999999875
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=131.97 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=103.8
Q ss_pred eEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+|||+|||+|.++..+++.+ .+|+|+|+|+.|+..++......
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 79999999999999999873 68999999999999887633210
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc--ccccCCCCCCccC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL--YHYSNMLNEDSIE 277 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~--y~~~~~~~~~~~~ 277 (298)
....++.+..+|+...+. +++||+|++..++++..+...+++.++++|||||.++...+.. +.....+......
T Consensus 47 ---gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 122 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYL 122 (224)
T ss_pred ---CCCcceEEEecccccCCC-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccccccccccc
Confidence 001367788888865533 4689999999988888999999999999999999998655431 1111111112335
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
++.+++.+++.+.||++++
T Consensus 123 ~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 123 VTREEWAELLARNNLRVVE 141 (224)
T ss_pred CCHHHHHHHHHHCCCeEEE
Confidence 7899999999999999975
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=136.13 Aligned_cols=186 Identities=19% Similarity=0.180 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHHhhhccCChHHHh-----hhhHHHHHHHHhhCCCCC---CCCCCCeEEEecccCcHHHHHHHHcCCeE
Q psy3185 73 DLEKVQTTLKQFVRDWSEEGSEERK-----TCYEPIISEILARFPPET---INPKDVNILVPGAGLGRLAFEIARRGYVC 144 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~g~~ER~-----~~~~~i~~~l~~~~p~~~---~~~~~~~VLdpGcG~Grla~ela~~G~~v 144 (298)
|-+.|+..-.+-...|+.+|-.+-- .....|.+-+...++... ..-.+.+|||+|||+|-|+..||+.|.+|
T Consensus 35 ~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V 114 (282)
T KOG1270|consen 35 DVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQV 114 (282)
T ss_pred cHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCee
Confidence 3366775555556677777744321 112234444544443110 01124679999999999999999999999
Q ss_pred EEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC-CCCCCCCeeEEeccccccccCCC
Q psy3185 145 QGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS-DYNDDCDFSMAAGDFLQVYVHPN 223 (298)
Q Consensus 145 ~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~-~~~~~~~~~~~~gDf~~~~~~~~ 223 (298)
+|+|.|..|+.+|+.- ++. .|. +.+-...+++...|.... .+
T Consensus 115 ~GID~s~~~V~vA~~h--~~~--------------------------------dP~~~~~~~y~l~~~~~~~E~~---~~ 157 (282)
T KOG1270|consen 115 TGIDASDDMVEVANEH--KKM--------------------------------DPVLEGAIAYRLEYEDTDVEGL---TG 157 (282)
T ss_pred EeecccHHHHHHHHHh--hhc--------------------------------Cchhccccceeeehhhcchhhc---cc
Confidence 9999999999999872 111 110 000001344555554443 46
Q ss_pred ceeEEEecccccCcchHHHHHHHHHHhccCCeEEE----EeccccccccCC---------C-CCCc--cCCCHHHHHHHH
Q psy3185 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI----NLGPLLYHYSNM---------L-NEDS--IEPSYEVVKQVI 287 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I----n~gPl~y~~~~~---------~-~~~~--~~ls~eEl~~~~ 287 (298)
+||+|++.-.+++..++.++++.+.++|||||.++ |-+-+.|+..-. | +.+. -.++++|+..++
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 79999999999999999999999999999999875 322233332111 1 1122 347999999999
Q ss_pred HhCCCEEE
Q psy3185 288 QGLGFVYE 295 (298)
Q Consensus 288 ~~~GF~i~ 295 (298)
...|+.+.
T Consensus 238 ~~~~~~v~ 245 (282)
T KOG1270|consen 238 NANGAQVN 245 (282)
T ss_pred HhcCcchh
Confidence 99988764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=125.08 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCCeEEEecccCcHHHHHHHH-c--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR-R--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~-~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|+++..|++ . +.+++|+|+|+.|+..++....+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------------------------------- 51 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------------------------------- 51 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-------------------------------
Confidence 468999999999999999994 4 678999999999999998854321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.. .++.+..+|+.++... +++||+|++..++++..+....++.+.++|||||+++...+
T Consensus 52 -------~~-~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 52 -------GL-DNIEFIQGDIEDLPQELEEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp -------TS-TTEEEEESBTTCGCGCSSTTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------cc-cccceEEeehhccccccCCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 11 2789999999996411 28999999998889999999999999999999999985433
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-14 Score=126.05 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEee
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNE 148 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D 148 (298)
.+..++.+.+..++..|..-...-....+......+...+.. .++.+|||+|||+|.++..++..+ .+++|+|
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D 83 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGV----RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCC----CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEe
Confidence 455677777777776665210000000111222333333321 235799999999999999999886 6899999
Q ss_pred CCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEE
Q psy3185 149 FSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCV 228 (298)
Q Consensus 149 ~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V 228 (298)
+|+.|+..++...... +...++.+..+|+.+....+++||+|
T Consensus 84 ~s~~~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 84 FSEGMLAVGREKLRDL--------------------------------------GLSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCHHHHHHHHHhhccc--------------------------------------ccccCeEEEecccccCCCCCCCccEE
Confidence 9999999887632110 00136778889988876666899999
Q ss_pred EecccccCcchHHHHHHHHHHhccCCeEEEEecccc-cc---------------------ccCCCCC-----C--ccCCC
Q psy3185 229 ATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL-YH---------------------YSNMLNE-----D--SIEPS 279 (298)
Q Consensus 229 ~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~-y~---------------------~~~~~~~-----~--~~~ls 279 (298)
++.+.++...++...++.+.++|+|||+++.+.... .+ +...... + ...++
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPD 205 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCC
Confidence 999989988999999999999999999987542110 00 0000000 0 12357
Q ss_pred HHHHHHHHHhCCCEEEEe
Q psy3185 280 YEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 280 ~eEl~~~~~~~GF~i~~~ 297 (298)
.+++..+++++||+++..
T Consensus 206 ~~~~~~~l~~aGf~~~~~ 223 (239)
T PRK00216 206 QEELAAMLEEAGFERVRY 223 (239)
T ss_pred HHHHHHHHHhCCCceeee
Confidence 899999999999998753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=142.13 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=105.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..||+. |..|+|+|+|+.|+..|+.... .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~---~------------------------------- 311 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI---G------------------------------- 311 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh---c-------------------------------
Confidence 4679999999999999999986 7899999999999998865110 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC-------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM------- 270 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~------- 270 (298)
...++.+..+|+.+...++++||+|++...+.+.++...++++++++|||||.++...+..-.....
T Consensus 312 ------~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 385 (475)
T PLN02336 312 ------RKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYI 385 (475)
T ss_pred ------CCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHH
Confidence 0136788899988876567899999999888888999999999999999999988543211000000
Q ss_pred CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....-..+.+++.++++++||+++.
T Consensus 386 ~~~g~~~~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 386 KQRGYDLHDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred HhcCCCCCCHHHHHHHHHHCCCeeee
Confidence 00012245889999999999999874
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=128.28 Aligned_cols=158 Identities=10% Similarity=0.005 Sum_probs=104.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+.+.+.+.+.-+ .++.+|||||||.|+.+..||.+||+|+|+|+|+..+..+..-. .+.|=+.
T Consensus 30 p~L~~~~~~l~~-----~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~---------~~~~~~~--- 92 (226)
T PRK13256 30 EFLVKHFSKLNI-----NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQN---------TINYEVI--- 92 (226)
T ss_pred HHHHHHHHhcCC-----CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHc---------CCCccee---
Confidence 344566655432 23579999999999999999999999999999999987654310 0000000
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC---CCceeEEEec-cccc-CcchHHHHHHHHHHhccCCe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH---PNKWDCVATC-FFID-CANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~---~~~fD~V~t~-ffid-ta~n~~~yl~~I~~~LkpGG 255 (298)
+......-...++.+.+|||.++... .+.||+|.-+ +|+. ..+...+|.+.+.++|+|||
T Consensus 93 ---------------~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 93 ---------------HGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred ---------------cccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 00000001125789999999998532 2689998654 3333 33445789999999999999
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
.++-+. +.+......|....+.+|+.+++.. +|++
T Consensus 158 ~llll~---~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 158 QILLLV---MEHDKKSQTPPYSVTQAELIKNFSA-KIKF 192 (226)
T ss_pred EEEEEE---EecCCCCCCCCCcCCHHHHHHhccC-CceE
Confidence 987542 2222223456788899999999954 4443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=130.84 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=100.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.... .++.+|||+|||.|.++..+|++ |..|+|+.+|..+...++..... .
T Consensus 50 k~~~~~~~~~l----~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~---~-------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLGL----KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIRE---A-------------- 108 (273)
T ss_dssp HHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHC---S--------------
T ss_pred HHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHh---c--------------
Confidence 45555555442 35789999999999999999999 99999999999999988763321 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...+.+..+|+.++. ++||.|+|.-.+.+. +|...|+++|+++|||||.++.
T Consensus 109 -------------------gl--~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 109 -------------------GL--EDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp -------------------TS--SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred -------------------CC--CCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 11 136788999998874 399999999888877 7899999999999999999863
Q ss_pred e---cc-ccccccCC-C--------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 L---GP-LLYHYSNM-L--------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~---gP-l~y~~~~~-~--------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
- .+ -.++.... . -+.+..+|.+++...+++.||++...
T Consensus 165 q~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~ 215 (273)
T PF02353_consen 165 QTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDV 215 (273)
T ss_dssp EEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEE
T ss_pred EecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEE
Confidence 1 11 11111100 0 01234468999999999999998753
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-14 Score=126.42 Aligned_cols=137 Identities=16% Similarity=0.229 Sum_probs=101.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++..+...
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~---------------------------------- 100 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR---------------------------------- 100 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999999887633210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccc----------c
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLY----------H 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y----------~ 266 (298)
....++.+..+|+.+.. ++||+|++++.+.+. +++...++++.+++++|+++. +.|-.+ .
T Consensus 101 ----~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~~~ 172 (219)
T TIGR02021 101 ----DVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT-FAPKTAWLAFLKMIGEL 172 (219)
T ss_pred ----CCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE-ECCCchHHHHHHHHHhh
Confidence 00126778889987763 789999988766543 457789999999999877765 333111 0
Q ss_pred ccCCC-CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 267 YSNML-NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 267 ~~~~~-~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+.... ......++.+++.++++++||++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 173 FPGSSRATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred CcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence 11101 11223478999999999999999865
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-14 Score=124.52 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=103.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+.+|||+|||+|.++..+++.|..|+|+|.|+.|+..++..+.. .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~------------------------------- 90 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK---D------------------------------- 90 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH---c-------------------------------
Confidence 467999999999999999999999999999999999887763221 0
Q ss_pred CCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc----c--------
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL----Y-------- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~----y-------- 265 (298)
. ..++.+..+|+.+.... +++||+|++...+++..++..+++.+.++|+|||.++...+.. +
T Consensus 91 ----~-~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~ 165 (224)
T TIGR01983 91 ----P-LLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAE 165 (224)
T ss_pred ----C-CCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhh
Confidence 0 01466777887776543 3799999999889989999999999999999999887433210 0
Q ss_pred -cccCCC--C-CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 266 -HYSNML--N-EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 -~~~~~~--~-~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+ . .....++.+++.+++++.||+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 166 YILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred hhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 000000 0 111235889999999999999964
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=131.03 Aligned_cols=137 Identities=22% Similarity=0.243 Sum_probs=104.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+++. |. .|+|+|.|+.|+..++......
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------------------------------- 125 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------------------------------- 125 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999888775 53 6999999999999988732210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC----
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML---- 271 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~---- 271 (298)
.+ .++.+..+|+.++...+++||+|++...+++.++...++++++++|||||.++..+...- ...+
T Consensus 126 -----g~---~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~--~~~~~~~~ 195 (272)
T PRK11873 126 -----GY---TNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR--GELPEEIR 195 (272)
T ss_pred -----CC---CCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc--CCCCHHHH
Confidence 00 256788899888766678999999998888888999999999999999999986432110 0000
Q ss_pred -------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 -------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 -------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
....-.++.+++.+++++.||..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 196 NDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred HhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 0012236789999999999998754
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=123.58 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=107.0
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~ 183 (298)
++.+....+. .++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..... .
T Consensus 37 ~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~---------------- 93 (233)
T PRK05134 37 LNYIREHAGG----LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALE---S---------------- 93 (233)
T ss_pred HHHHHHhccC----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHH---c----------------
Confidence 4555555432 2467999999999999999999999999999999999887653211 0
Q ss_pred cccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 184 ~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
...+.+..+|+..... ..++||+|++.+.+.+..+....++.+.++|+|||.++...|
T Consensus 94 ---------------------~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 94 ---------------------GLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ---------------------CCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 0134455666665532 347999999999899889999999999999999999874332
Q ss_pred c----c---------ccccC--CC-CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 263 L----L---------YHYSN--ML-NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 263 l----~---------y~~~~--~~-~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
- . |.... .. ....-.++.+++..++++.||+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~ 202 (233)
T PRK05134 153 NRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD 202 (233)
T ss_pred CCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence 1 0 00000 00 0112246899999999999999875
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=131.79 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=97.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..|+++|++|+|+|+|+.|+..++........ .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~-----------------------------~-- 192 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALA-----------------------------A-- 192 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccc-----------------------------c--
Confidence 467999999999999999999999999999999999988873321000 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccccccc------C-
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYHYS------N- 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~~~------~- 269 (298)
.....++.+..+|+.++ +++||+|+++..+.+.++ ....++.+.+ +.+||++|.+.|-.+.+. .
T Consensus 193 ---~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~ 265 (315)
T PLN02585 193 ---LPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGEL 265 (315)
T ss_pred ---cccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhh
Confidence 00012566777887554 578999998876654433 3456666665 568899888777422211 0
Q ss_pred CCCC----CccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 270 MLNE----DSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 270 ~~~~----~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.++. .....+.+|+.++++++||++...
T Consensus 266 ~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 266 FPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 0111 122358999999999999999754
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=125.69 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCCeEEEecccCcHHHHHHHH----cC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAV 192 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~ 192 (298)
++.+|||+|||+|.++..|++ .| .+|+|+|+|+.|+..++.... .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~-------------------------- 110 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---R-------------------------- 110 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---c--------------------------
Confidence 467999999999999999885 35 489999999999998865210 0
Q ss_pred ccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEe---ccccc--
Q psy3185 193 TFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINL---GPLLY-- 265 (298)
Q Consensus 193 ~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~---gPl~y-- 265 (298)
.++.+..++...+...+++||+|++++++++.++ +...++++++++| |+++|+- +++.|
T Consensus 111 -------------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~~~~ 176 (232)
T PRK06202 111 -------------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLAYAL 176 (232)
T ss_pred -------------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHHHHH
Confidence 1233344444334335689999999999998876 4679999999998 6666651 11111
Q ss_pred -c------ccC----CCCCCc--cCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 -H------YSN----MLNEDS--IEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 -~------~~~----~~~~~~--~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
. ..+ .....+ -.++.+|+.+++++ ||++...
T Consensus 177 ~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 177 FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQ 220 (232)
T ss_pred HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEec
Confidence 0 000 001122 24899999999999 9998764
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=126.20 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=99.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++.+. .++|+|.|+.|+..++..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~------------------------------------ 78 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL------------------------------------ 78 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc------------------------------------
Confidence 47899999999999999999874 5799999999998776411
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC---CC-C
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM---LN-E 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~---~~-~ 273 (298)
+ .++.++.+|+.+....+++||+|++.+.+++..+...+++.+.++|||||.++...|..-..... .. .
T Consensus 79 -----~--~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~ 151 (240)
T TIGR02072 79 -----S--ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQH 151 (240)
T ss_pred -----C--CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHh
Confidence 0 14567888888876667899999999999999899999999999999999998655422111000 00 1
Q ss_pred CccCCCHHHHHHHHHhCCCEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..-..+.+++.+++.+. |...
T Consensus 152 ~~~~~~~~~~~~~l~~~-f~~~ 172 (240)
T TIGR02072 152 GLRYLSLDELKALLKNS-FELL 172 (240)
T ss_pred ccCCCCHHHHHHHHHHh-cCCc
Confidence 12235678888888876 6543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=120.87 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=107.0
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHHHHHHHHHHhhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFMLFASNFILNKCR 165 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~Ml~~a~~~l~~~~ 165 (298)
|..+...|| |+++|..+...........+|||+|||.|.+.+.|++.||. .+|+|+|+..+..|+.+..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 888777787 77777766541111223349999999999999999999986 8999999999998887654321
Q ss_pred hccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCcchHHHHH
Q psy3185 166 EKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCANNIVSFI 244 (298)
Q Consensus 166 ~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta~n~~~yl 244 (298)
.. |.+ .+..-|+.. | .+..++|.-+ .+.++||+|-.+- -++ ..+..|+
T Consensus 116 ~~-------------n~I-------~f~q~DI~~---~-----~~~~~qfdlv-lDKGT~DAisLs~d~~~--~r~~~Y~ 164 (227)
T KOG1271|consen 116 FS-------------NEI-------RFQQLDITD---P-----DFLSGQFDLV-LDKGTLDAISLSPDGPV--GRLVVYL 164 (227)
T ss_pred CC-------------cce-------eEEEeeccC---C-----cccccceeEE-eecCceeeeecCCCCcc--cceeeeh
Confidence 11 100 001112211 0 1233333222 3567888776552 221 2236799
Q ss_pred HHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 245 ETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 245 ~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..+.++|+|||+++. .+..+|.+||.+.+++.||++..+
T Consensus 165 d~v~~ll~~~gifvI--------------tSCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 165 DSVEKLLSPGGIFVI--------------TSCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred hhHhhccCCCcEEEE--------------EecCccHHHHHHHHhcCCeEEEEe
Confidence 999999999999985 356778999999999999998753
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=118.14 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=92.2
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ +..|+|+|.|+.|+..++......
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--------------------------------- 92 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--------------------------------- 92 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc---------------------------------
Confidence 679999999999999999974 578999999999999888743220
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
. ..++++..+|+.++.. .++||+|++.. ..++..+++.++++|||||+++.+-+-
T Consensus 93 -----~-l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~-------------- 147 (187)
T PRK00107 93 -----G-LKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR-------------- 147 (187)
T ss_pred -----C-CCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC--------------
Confidence 0 0248889999888765 67999999864 346788999999999999999854211
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
-...++.++.+..|+.+..
T Consensus 148 ~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 148 DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred ChHHHHHHHHHhcCceEee
Confidence 1256677888878888653
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=120.92 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=107.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+.+.+.+.++. .++.+|||+|||+|.++..+++.. ..|+|+|.|+.|+..++.....
T Consensus 7 ~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---------------- 66 (241)
T PRK08317 7 YRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---------------- 66 (241)
T ss_pred HHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----------------
Confidence 33444444442 246799999999999999999873 5799999999999988762100
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|+......+++||+|++...+++..+...++++++++|||||.++.
T Consensus 67 ------------------------~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 67 ------------------------LGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred ------------------------CCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 01367788888877665678999999999999999999999999999999999986
Q ss_pred eccc----cccccCC----------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPL----LYHYSNM----------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl----~y~~~~~----------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|- .+...+. .....-..+..++.+++++.||+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 173 (241)
T PRK08317 123 LDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIE 173 (241)
T ss_pred EecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCcee
Confidence 5431 1111000 00011123457899999999998653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=118.95 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=88.6
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|..+ .+|+|+|.|+.|+..++...++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~--------------------------------- 89 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL--------------------------------- 89 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---------------------------------
Confidence 5799999999999999998765 57999999999998887633210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
.+ .++.++.+|+.++. ..++||+|++.. ..++..+++.++++|||||+++.. +..
T Consensus 90 ---~~---~~i~~i~~d~~~~~-~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~-----~~~--------- 144 (181)
T TIGR00138 90 ---GL---NNVEIVNGRAEDFQ-HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAY-----KGK--------- 144 (181)
T ss_pred ---CC---CCeEEEecchhhcc-ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEE-----cCC---------
Confidence 00 25788999998863 467999988765 345677889999999999999842 211
Q ss_pred CCHHHHHHHHHh---CCCEEEE
Q psy3185 278 PSYEVVKQVIQG---LGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~---~GF~i~~ 296 (298)
-...++..+.++ .||+.++
T Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 145 KYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred CcHHHHHHHHHhhhhcCceEee
Confidence 114555555555 8998765
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=119.88 Aligned_cols=137 Identities=23% Similarity=0.251 Sum_probs=103.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC---eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY---VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~---~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++.+. +++|+|.|+.|+..++....
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 467999999999999999998864 79999999999987765211
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc--c--------
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL--Y-------- 265 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~--y-------- 265 (298)
...++.+..+|+.+....+++||+|++.+.+++..++..+++.+.++|||||.++..+... .
T Consensus 86 --------~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~ 157 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYK 157 (223)
T ss_pred --------cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHH
Confidence 0125677888888876556899999999999989999999999999999999998543210 0
Q ss_pred -c-----------ccCCCCC-------CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 266 -H-----------YSNMLNE-------DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 -~-----------~~~~~~~-------~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
. +...... ....++.+++.+++++.||+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 207 (223)
T TIGR01934 158 FYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVR 207 (223)
T ss_pred HHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccce
Confidence 0 0000000 01235889999999999999764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=131.56 Aligned_cols=132 Identities=18% Similarity=0.171 Sum_probs=95.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+. |.+|+|+|+|+.|+..++.... .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~---~------------------------------- 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA---G------------------------------- 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---c-------------------------------
Confidence 4679999999999999999986 7899999999999998876221 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccc---cccccCCC-
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPL---LYHYSNML- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl---~y~~~~~~- 271 (298)
.++++..+|+.++ +++||+|++..++++. .+...+++.++++|||||+++..... .+...+..
T Consensus 213 --------l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i 281 (383)
T PRK11705 213 --------LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWI 281 (383)
T ss_pred --------CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCc
Confidence 1355667777655 4789999988777765 56789999999999999999753211 00000000
Q ss_pred ----CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+...-++.+++...++ .||++..
T Consensus 282 ~~yifp~g~lps~~~i~~~~~-~~~~v~d 309 (383)
T PRK11705 282 NKYIFPNGCLPSVRQIAQASE-GLFVMED 309 (383)
T ss_pred eeeecCCCcCCCHHHHHHHHH-CCcEEEE
Confidence 01123467899988876 5899875
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-14 Score=111.50 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=72.8
Q ss_pred EEEecccCcHHHHHHHHcC-----CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 123 ILVPGAGLGRLAFEIARRG-----YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 123 VLdpGcG~Grla~ela~~G-----~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
|||+|||+|+.+..+++.. ..++|+|+|+.|+..++..... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~------------------------------ 47 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---D------------------------------ 47 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---T------------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---c------------------------------
Confidence 7999999999999999884 7899999999999988763211 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccc-cc--CcchHHHHHHHHHHhccCCe
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF-ID--CANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff-id--ta~n~~~yl~~I~~~LkpGG 255 (298)
..++.++++|+.++....++||+|++.+- ++ +.+.+..+++++.++|||||
T Consensus 48 -------~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 48 -------GPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -------TTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -------CCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 12677899999998777789999998533 44 44568899999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-15 Score=116.83 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=58.8
Q ss_pred EEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 124 LVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 124 LdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
||+|||+|+++..++.. +.+++|+|+|+.|+..++..+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~----------------------------------- 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN----------------------------------- 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------------------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----------------------------------
Confidence 79999999999999998 77899999999999665542221000
Q ss_pred CCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 202 YNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.....+.+...|..... ..++||+|++...+++.+++..+++.++++|||||++
T Consensus 46 -~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 46 -DNFERLRFDVLDLFDYD-PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC-C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -cceeEEEeecCChhhcc-cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 00001222222222221 1269999999999999999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=118.65 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+++. +..++|+|.|+.|+..++. +
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~---~----------------------------------- 55 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA---R----------------------------------- 55 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH---c-----------------------------------
Confidence 569999999999999999865 5679999999999987643 0
Q ss_pred CCCCCCCCCeeEEeccccc-cc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE-Eeccc-----cc-----
Q psy3185 199 TSDYNDDCDFSMAAGDFLQ-VY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI-NLGPL-----LY----- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~-~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I-n~gPl-----~y----- 265 (298)
++.+..+|+.+ +. ..+++||+|++...+++.+++...++++.++++++.+-+ |.+.. .+
T Consensus 56 --------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~ 127 (194)
T TIGR02081 56 --------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRM 127 (194)
T ss_pred --------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCcc
Confidence 23345556544 21 346789999999999999999999999999888753221 11110 01
Q ss_pred --------cccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 --------HYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 --------~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+.+ ..+....+.+++.++++++||++++.
T Consensus 128 ~~~~~~~~~~~~--~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 128 PVTGELPYDWYN--TPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred ccCCCCCccccC--CCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 1100 01123578999999999999999864
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=133.48 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=100.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..|++.+.+|+|+|+|+.|+..++...+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~------------------------------------ 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESING------------------------------------ 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhc------------------------------------
Confidence 35699999999999999999999999999999999986643110
Q ss_pred CCCCCCCCCeeEEeccccc--cccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccccccc-CC--C
Q psy3185 199 TSDYNDDCDFSMAAGDFLQ--VYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYHYS-NM--L 271 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~--~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~~~-~~--~ 271 (298)
...++.+..+|+.. ++.++++||+|++.+.+++..+ +...++.++++|||||+++..... ++.. +. .
T Consensus 81 -----~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~~ 154 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKRK 154 (475)
T ss_pred -----cCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCccccc
Confidence 01256778888753 3345689999999888876655 678999999999999998753221 2211 11 1
Q ss_pred CCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 272 NEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 272 ~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..++.-.+..++.+++.++||...
T Consensus 155 ~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 155 NNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCCCeecChHHHHHHHHHheeccC
Confidence 124555678899999999999765
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-13 Score=120.92 Aligned_cols=150 Identities=19% Similarity=0.311 Sum_probs=110.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.+.. .++.+|||+|||.|.++...|++ |.+|+|+++|..|+..++..... .
T Consensus 60 k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~---~-------------- 118 (283)
T COG2230 60 KLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA---R-------------- 118 (283)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH---c--------------
Confidence 55666666653 36889999999999999999998 79999999999999988874321 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++.+...|..++ .+.||.|||.=.+++. +|...||+.++++|+|||.+++
T Consensus 119 -------------------gl--~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 119 -------------------GL--EDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred -------------------CC--CcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence 01 13677777887776 3459999998766644 5699999999999999999975
Q ss_pred e---cccc-c-cccCC----CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 L---GPLL-Y-HYSNM----LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~---gPl~-y-~~~~~----~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
. +|-. + ++..- -.+...-+|..++.+.....||.+.+.
T Consensus 175 h~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~ 221 (283)
T COG2230 175 HSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDV 221 (283)
T ss_pred EEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence 3 2210 0 11000 012345567999999999999998753
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=124.41 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=80.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-----CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~ 177 (298)
+.+.|.+.++ ....+|||+|||+|.++..|++. +..|+|+|+|..|+..|+...
T Consensus 74 i~~~l~~~l~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------------- 132 (272)
T PRK11088 74 VANLLAERLD-----EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------------- 132 (272)
T ss_pred HHHHHHHhcC-----CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------------
Confidence 4444555554 23568999999999999999875 247999999999998875410
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 178 QTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 178 ~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+..+|..+++..+++||+|++.+.- ..+++++++|||||++
T Consensus 133 ----------------------------~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~l 177 (272)
T PRK11088 133 ----------------------------PQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIV 177 (272)
T ss_pred ----------------------------CCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEE
Confidence 24667888888887778899999987641 2368899999999999
Q ss_pred EEeccc
Q psy3185 258 INLGPL 263 (298)
Q Consensus 258 In~gPl 263 (298)
|.+.|-
T Consensus 178 i~~~p~ 183 (272)
T PRK11088 178 ITVTPG 183 (272)
T ss_pred EEEeCC
Confidence 987663
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=114.78 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=96.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..|++.|..|+|+|+|+.|+..++......
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 3579999999999999999999999999999999999888643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeEEEEeccc---cc--c-----
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGIWINLGPL---LY--H----- 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~~In~gPl---~y--~----- 266 (298)
....++.+..+|+.. .+++||+|++...+++ .+++...++.+.+++++|+ ++.+.|- .. .
T Consensus 109 ----~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~~~~~~~~~~~l~~~ 180 (230)
T PRK07580 109 ----GLAGNITFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL-IFTFAPYTPLLALLHWIGGL 180 (230)
T ss_pred ----CCccCcEEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE-EEEECCccHHHHHHHHhccc
Confidence 001257788888432 3578999998776643 4567788888888775544 4544331 00 0
Q ss_pred ccCC-CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 267 YSNM-LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 267 ~~~~-~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+... .......++.+++..++++.||++...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 181 FPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred cCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 0000 111234578999999999999998753
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=112.76 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=91.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..+...
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------------- 64 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLN----------------------------------- 64 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-----------------------------------
Confidence 468999999999999999999889999999999999887633210
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc---------------------chHHHHHHHHHHhccCCeEEE
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA---------------------NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta---------------------~n~~~yl~~I~~~LkpGG~~I 258 (298)
..++.+..+|+.+.. .++||+|++..-.... .-+..+++.+.++|||||.++
T Consensus 65 -----~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 65 -----NVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred -----CCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence 024567778876643 4589999876321111 114678999999999999987
Q ss_pred EeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 259 NLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 259 n~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+.+ .. -...++...+++.||..+..
T Consensus 138 ~~~~----~~---------~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 138 LIQS----SL---------NGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred EEEe----cc---------CChHHHHHHHHhCCCeEEEE
Confidence 5422 11 12688999999999998653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=117.59 Aligned_cols=125 Identities=17% Similarity=0.055 Sum_probs=88.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..||+. +..|+|+|+|+.|+..++......
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-------------------------------- 87 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-------------------------------- 87 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--------------------------------
Confidence 4679999999999999999987 357999999999999887632210
Q ss_pred CCCCCCCCCCCeeEEeccc-cccc--cCCCceeEEEecccccCc---c-----hHHHHHHHHHHhccCCeEEEEeccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDF-LQVY--VHPNKWDCVATCFFIDCA---N-----NIVSFIETIFNILKPGGIWINLGPLLY 265 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf-~~~~--~~~~~fD~V~t~ffidta---~-----n~~~yl~~I~~~LkpGG~~In~gPl~y 265 (298)
. ..++.++.+|+ ..+. .++++||+|++.|-.... . ....+++.++++|||||+++...+-.
T Consensus 88 ----~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~- 159 (202)
T PRK00121 88 ----G---LTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE- 159 (202)
T ss_pred ----C---CCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH-
Confidence 0 03678899998 5554 356889999876532111 1 14679999999999999998543310
Q ss_pred cccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 266 HYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 266 ~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
--..++.+.+++.||...
T Consensus 160 ------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 160 ------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ------------HHHHHHHHHHHhCccccc
Confidence 013456666667776654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=121.55 Aligned_cols=115 Identities=20% Similarity=0.153 Sum_probs=78.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
+....+.+.+.++ ++.+|||+|||+|+.+..|++. ++.|+|+|+|..||..++..+.. .
T Consensus 50 l~~~~~~ia~~~~------~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~--~---------- 111 (301)
T TIGR03438 50 LERHADEIAAATG------AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA--D---------- 111 (301)
T ss_pred HHHHHHHHHHhhC------CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh--h----------
Confidence 3334445555554 3568999999999999999987 68999999999999988763321 0
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCce----eEEEe---cccccCcchHHHHHHHHHH
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKW----DCVAT---CFFIDCANNIVSFIETIFN 249 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~f----D~V~t---~ffidta~n~~~yl~~I~~ 249 (298)
.| ..++..+.|||.+.......+ ++++. .+..-..++...+|+.+++
T Consensus 112 -----------------~p---------~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 112 -----------------YP---------QLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred -----------------CC---------CceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 01 135667889987642212222 23332 1222245567889999999
Q ss_pred hccCCeEEE
Q psy3185 250 ILKPGGIWI 258 (298)
Q Consensus 250 ~LkpGG~~I 258 (298)
.|+|||.++
T Consensus 166 ~L~pgG~~l 174 (301)
T TIGR03438 166 LLGPGGGLL 174 (301)
T ss_pred hcCCCCEEE
Confidence 999999987
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=116.61 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=85.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|.. |+|+|+|+.|+..++..... + .+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~---------------------------~~ 167 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N---------------------------GV 167 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c---------------------------CC
Confidence 4679999999999999999999876 99999999999988763221 0 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
. ..+.+..+| .+||+|++... +..+..+++.+.++|||||++|..|.+.
T Consensus 168 -----~--~~~~~~~~~--------~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~------------- 216 (250)
T PRK00517 168 -----E--LNVYLPQGD--------LKADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILE------------- 216 (250)
T ss_pred -----C--ceEEEccCC--------CCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcH-------------
Confidence 0 122222222 27999987643 3446688999999999999999655421
Q ss_pred CCHHHHHHHHHhCCCEEEEe
Q psy3185 278 PSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~~ 297 (298)
-..+++.+.+++.||+++..
T Consensus 217 ~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 217 EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred hhHHHHHHHHHHCCCEEEEE
Confidence 12678999999999998753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=118.09 Aligned_cols=121 Identities=20% Similarity=0.171 Sum_probs=88.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++..... +.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n~---------------------------- 206 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----NQ---------------------------- 206 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----cC----------------------------
Confidence 357999999999999999999986 699999999999988763221 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
+. ..+....++.... .+++||+|++... +..+..++..+.++|||||+++..|.+..
T Consensus 207 ----~~--~~~~~~~~~~~~~--~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~sgi~~~------------ 263 (288)
T TIGR00406 207 ----VS--DRLQVKLIYLEQP--IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLILSGILET------------ 263 (288)
T ss_pred ----CC--cceEEEecccccc--cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEEEeCcHh------------
Confidence 00 1233444442222 3578999998764 34567899999999999999997775422
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
..+++.+.+++. |+++.
T Consensus 264 -~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 264 -QAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred -HHHHHHHHHHcc-Cceee
Confidence 157888888776 88765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=119.14 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=81.4
Q ss_pred CCCeEEEecccCcHHHH----HHHHc-------CCeEEEeeCCHHHHHHHHHHHhhhhh---cccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAF----EIARR-------GYVCQGNEFSLFMLFASNFILNKCRE---KNVYKIYPWVQQTDNNIL 184 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~----ela~~-------G~~v~g~D~S~~Ml~~a~~~l~~~~~---~~~~~i~p~~~~~s~~~~ 184 (298)
++.+|||+|||||.-++ .+++. ++.|+|+|+|+.||..|+...-.... ....-+..|.....+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~--- 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED--- 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC---
Confidence 45799999999998544 44443 36799999999999988752100000 000000011110000
Q ss_pred ccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEecc
Q psy3185 185 THHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 185 ~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+.+.+- + ..++.+..+|..+.+.+.++||+|++...+... ++....+++++++|||||+++ +|+
T Consensus 176 ------~~~v~~~----i--r~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~-lg~ 242 (264)
T smart00138 176 ------KYRVKPE----L--KERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLF-LGH 242 (264)
T ss_pred ------eEEEChH----H--hCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEE-EEC
Confidence 0111110 0 137889999999876667899999987665544 456789999999999999998 453
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-12 Score=107.45 Aligned_cols=127 Identities=21% Similarity=0.289 Sum_probs=89.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++++|.+|+|+|.|+.|+..++..+... .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~----~----------------------------- 69 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN----N----------------------------- 69 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc----C-----------------------------
Confidence 3568999999999999999999999999999999998886633210 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc--cc-------------------cCcchHHHHHHHHHHhccCCeEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF--FI-------------------DCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f--fi-------------------dta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.. ..++.+..+|+.+.. .+++||+|++.. +. +....+..+++++.++|||||.+
T Consensus 70 ---~~-~~~~~~~~~d~~~~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~ 144 (188)
T PRK14968 70 ---IR-NNGVEVIRSDLFEPF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRI 144 (188)
T ss_pred ---CC-CcceEEEeccccccc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEE
Confidence 00 012556667766543 234799887642 11 11233567899999999999988
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+..-|- ....+++.+++.+.||++..
T Consensus 145 ~~~~~~-------------~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 145 LLLQSS-------------LTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred EEEEcc-------------cCCHHHHHHHHHHCCCeeee
Confidence 743221 11257899999999998764
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=112.70 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..|++. +.+++|+|+|+.|+..|+..+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------------------------------------ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------------------------------------ 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------------------------------------
Confidence 568999999999999999987 678999999999999886510
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~I 258 (298)
.++.+..+|+.+ +..+++||+|++..++.+. .++..++++++++++ ++++
T Consensus 88 --------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 88 --------PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred --------CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEE
Confidence 123466777777 4567899999998776544 457889999999884 4554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=100.43 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=73.2
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..++++ +..|+|+|.|+.|+..++...+...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------------------------- 67 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-------------------------------- 67 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC--------------------------------
Confidence 569999999999999999987 3579999999999998876432210
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+ .++.++.+|..... ...++||+|++.... ....++++.++++|||||.++.
T Consensus 68 ----~---~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 68 ----V---SNIVIVEGDAPEALEDSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ----C---CceEEEeccccccChhhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 0 14556667655422 224689999886533 3456899999999999999873
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-12 Score=111.93 Aligned_cols=158 Identities=18% Similarity=0.097 Sum_probs=96.5
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l 161 (298)
-+|-|.. + |-..-..|+..+ +.++. .++.+|||+|||+|.++..+|+.. ..|+|+|.|+.|+.......
T Consensus 46 ~~~~~~~-~---r~~~~~~ll~~~-~~l~i----~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a 116 (226)
T PRK04266 46 EYREWNP-R---RSKLAAAILKGL-KNFPI----KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVA 116 (226)
T ss_pred EEEEECC-C---ccchHHHHHhhH-hhCCC----CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHh
Confidence 3577877 2 222222344434 23442 356799999999999999999873 57999999999998654421
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcc
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCAN 238 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~ 238 (298)
.. ..|+....+|..+. ..-.++||+|++.. ....
T Consensus 117 ---~~--------------------------------------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~--~~p~ 153 (226)
T PRK04266 117 ---EE--------------------------------------RKNIIPILADARKPERYAHVVEKVDVIYQDV--AQPN 153 (226)
T ss_pred ---hh--------------------------------------cCCcEEEECCCCCcchhhhccccCCEEEECC--CChh
Confidence 11 02455566666431 11135699998542 1111
Q ss_pred hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 239 n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.....+++++++|||||.++..-| |+..+... ...+.. ++..++++++||+++..
T Consensus 154 ~~~~~L~~~~r~LKpGG~lvI~v~--~~~~d~~~-~~~~~~-~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 154 QAEIAIDNAEFFLKDGGYLLLAIK--ARSIDVTK-DPKEIF-KEEIRKLEEGGFEILEV 208 (226)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe--cccccCcC-CHHHHH-HHHHHHHHHcCCeEEEE
Confidence 234568999999999999985322 22111101 111222 44559999999999764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-12 Score=129.12 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+. +..|+|+|+|+.|+..++.....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~--------------------------------- 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN--------------------------------- 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---------------------------------
Confidence 3679999999999999999976 56899999999999988753210
Q ss_pred CCCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccC-------------cchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDC-------------ANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidt-------------a~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...++.+..||..+++ .++++||+|++++.++. ..++...+++++++|||||.++..
T Consensus 465 -------~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0125667888887765 46789999998876653 246789999999999999999864
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=118.70 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||||||+|.++.+.+..|..|+|+|.|+.|+..++.-+...
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~---------------------------------- 227 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY---------------------------------- 227 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh----------------------------------
Confidence 4679999999999999999999999999999999999877633210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEec--cccc------Cc-chHHHHHHHHHHhccCCeEEEEeccccccccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFID------CA-NNIVSFIETIFNILKPGGIWINLGPLLYHYSN 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffid------ta-~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~ 269 (298)
.+ .++.+..+|+.+++..+++||+|++. |... .. ....++++.++++|||||.++..-|-
T Consensus 228 --g~---~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------ 296 (329)
T TIGR01177 228 --GI---EDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------ 296 (329)
T ss_pred --CC---CCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------
Confidence 00 13668889998887667899999984 3221 11 12468999999999999988754331
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++..+++.+|| ++.
T Consensus 297 ----------~~~~~~~~~~~g~-i~~ 312 (329)
T TIGR01177 297 ----------RIDLESLAEDAFR-VVK 312 (329)
T ss_pred ----------CCCHHHHHhhcCc-chh
Confidence 1245577888999 653
|
This family is found exclusively in the Archaea. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=108.74 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=74.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|. +|+|+|.|+.|+..++......
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------------- 82 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------------- 82 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh---------------------------------
Confidence 357999999999999999999887 8999999999999887532110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCc-------------------chHHHHHHHHHHhccCCeE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCA-------------------NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta-------------------~n~~~yl~~I~~~LkpGG~ 256 (298)
..++.+..+|+.+.. .+++||+|++. |+-... ..+..+++.+.++|||||.
T Consensus 83 -------~~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 83 -------GVDVDVRRGDWARAV-EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred -------CCeeEEEECchhhhc-cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 013566778876643 45789999886 322211 1245678899999999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
++.
T Consensus 155 l~~ 157 (223)
T PRK14967 155 LLL 157 (223)
T ss_pred EEE
Confidence 874
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=104.67 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++++ ..|+|+|.|+.|+..++....+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-------------------------------- 78 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-------------------------------- 78 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh--------------------------------
Confidence 46799999999999999999874 58999999999999887532210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSI 276 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~ 276 (298)
.+ .++.+..+|.... .+++||+|++.... .++..+++.++++|||||+++...+ .
T Consensus 79 ----~~---~~i~~~~~d~~~~--~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~-------------~ 133 (187)
T PRK08287 79 ----GC---GNIDIIPGEAPIE--LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI-------------L 133 (187)
T ss_pred ----CC---CCeEEEecCchhh--cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-------------c
Confidence 00 2466677776432 24689999876533 3466789999999999999874211 1
Q ss_pred CCCHHHHHHHHHhCCCEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~ 295 (298)
.-+.+++..++++.||+..
T Consensus 134 ~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 134 LENLHSALAHLEKCGVSEL 152 (187)
T ss_pred HhhHHHHHHHHHHCCCCcc
Confidence 1236788999999999643
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-12 Score=99.78 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=79.1
Q ss_pred CeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
.+|||||||+|.++..+++.| ..++|+|+++..+..++..+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----------------------------------- 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----------------------------------- 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC-----------------------------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc-----------------------------------
Confidence 589999999999999999999 88999999999999888743210
Q ss_pred CCCCCCCCeeEEeccccccc--cCCCceeEEEec-ccccCc-------chHHHHHHHHHHhccCCeEEEEec
Q psy3185 200 SDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATC-FFIDCA-------NNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~-ffidta-------~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
....++.+..+|+.++. ..+++||+|+++ -+..+. .....+++.+.++|||||.++-+-
T Consensus 47 ---~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 47 ---GLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---TTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 00146889999998886 467999999986 233221 124578999999999999987543
|
... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=108.66 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=89.0
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++......
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------------------------------- 134 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL--------------------------------- 134 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 468999999999999999987 568999999999999887633210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc-ccc------Cc-------------------chHHHHHHHHHHhc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FID------CA-------------------NNIVSFIETIFNIL 251 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fid------ta-------------------~n~~~yl~~I~~~L 251 (298)
.+ .++.+..+|+.+.. ++++||+|++.. ++. .. ......++.+.++|
T Consensus 135 ---~~---~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L 207 (251)
T TIGR03534 135 ---GL---DNVTFLQSDWFEPL-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL 207 (251)
T ss_pred ---CC---CeEEEEECchhccC-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 00 25778889987743 468999998842 111 00 11236789999999
Q ss_pred cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 252 KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 252 kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
||||.++.. .++ -..+++.+++++.||+.+.
T Consensus 208 ~~gG~~~~~----~~~----------~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 208 KPGGWLLLE----IGY----------DQGEAVRALFEAAGFADVE 238 (251)
T ss_pred ccCCEEEEE----ECc----------cHHHHHHHHHHhCCCCceE
Confidence 999988731 111 1257899999999997653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=107.51 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=76.6
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ +..|+|+|.|..|+..++..+.+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--------------------------------- 63 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--------------------------------- 63 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---------------------------------
Confidence 569999999999999999988 467999999999999887632210
Q ss_pred CCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCcch--------HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCANN--------IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta~n--------~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.++.+|+.++. .+++++|.|+..|--.+.+. ...+++.++++|||||.++.
T Consensus 64 ---~l---~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 64 ---GL---KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred ---CC---CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 01 37889999987653 34568999987763221111 14789999999999999874
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=107.58 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=79.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+.+.+.. .++.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++..+.+.
T Consensus 60 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------- 120 (205)
T PRK13944 60 MVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------------- 120 (205)
T ss_pred HHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------
Confidence 34444444432 24679999999999999999875 358999999999999887643220
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++++..+|+.+.....++||+|++...+.+. .+++.+.|||||.++.
T Consensus 121 -----------------------~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 121 -----------------------GYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI------PSALVRQLKDGGVLVI 171 (205)
T ss_pred -----------------------CCCCcEEEEECCcccCCccCCCccEEEEccCcchh------hHHHHHhcCcCcEEEE
Confidence 00125788999998765556799999887655433 3578899999999863
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=106.12 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=89.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++.++|+. | .+|+|+|.|+.|+..++......
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------------------------------- 88 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------------------------------- 88 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 5679999999999999999875 3 57999999999999887633210
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNED 274 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~ 274 (298)
.+ ..++.++.+|+.++.. ..+.||+|+... ...++..+++.+.++|||||.++...+..
T Consensus 89 -----g~--~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---------- 148 (198)
T PRK00377 89 -----GV--LNNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL---------- 148 (198)
T ss_pred -----CC--CCCeEEEEechhhhHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------
Confidence 00 1356778888876533 246899988754 23567789999999999999987322111
Q ss_pred ccCCCHHHHHHHHHhCCCEEE
Q psy3185 275 SIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF~i~ 295 (298)
-+.+++...+++.||...
T Consensus 149 ---~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 149 ---ETVNNALSALENIGFNLE 166 (198)
T ss_pred ---HHHHHHHHHHHHcCCCeE
Confidence 125788888888998543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=110.61 Aligned_cols=136 Identities=14% Similarity=0.100 Sum_probs=95.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|||+|.++..++++. .+|+++|. +.|+..++..... .
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~---~----------------------------- 195 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE---K----------------------------- 195 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh---C-----------------------------
Confidence 45799999999999999999984 67999998 6899887653221 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML--- 271 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--- 271 (298)
.-..+++++.|||.+... ..+|+|+.+.+++.. +.....++++++.|||||.++....+.-. ...+
T Consensus 196 ------gl~~rv~~~~~d~~~~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~-~~~~~~~ 266 (306)
T TIGR02716 196 ------GVADRMRGIAVDIYKESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD-PENPNFD 266 (306)
T ss_pred ------CccceEEEEecCccCCCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC-CCCchhh
Confidence 011368899999876432 237998888777643 33467999999999999999765332111 0000
Q ss_pred ---------C-CCcc--CCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ---------N-EDSI--EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ---------~-~~~~--~ls~eEl~~~~~~~GF~i~~ 296 (298)
. ..+. ..+.+|+.++++++||+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 267 YLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred HHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 0 0011 12379999999999998654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=107.52 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=78.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe---EEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV---CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~---v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+.+.+.. .++.+|||+|||+|.++..||+.+.. |+|+|.|+.|+..++..+...
T Consensus 65 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------------- 125 (215)
T TIGR00080 65 MVAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------------- 125 (215)
T ss_pred HHHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC---------------
Confidence 34444444432 34679999999999999999998543 999999999999988744320
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. -.++.++.+|..+.....+.||+|+...... .+.+.+.+.|||||++|.
T Consensus 126 ---------------------g---~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 126 ---------------------G---LDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred ---------------------C---CCCeEEEECCcccCCcccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEEE
Confidence 0 1367888999877655557899988665332 234568889999999863
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=105.47 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=87.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHH-HcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIA-RRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela-~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
|.+.+...... ..+..||++|||||+.--..- ..+..||++|.++.|-..+..- ..+.
T Consensus 64 lFs~i~~~~gk----~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks---~~E~-------------- 122 (252)
T KOG4300|consen 64 LFSGIYYFLGK----SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKS---AAEK-------------- 122 (252)
T ss_pred HHhhhHHHhcc----cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHH---Hhhc--------------
Confidence 45555544432 245678999999999766554 3588999999999999877652 1110
Q ss_pred cccccccccccccCCCCCCCCCCCCCee-EEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFS-MAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~-~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++. ++.++-.+++ .++++||+||..|.|-..++..+.|+++.++|||||.+|-
T Consensus 123 --------------------k~--~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 123 --------------------KP--LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred --------------------cC--cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 01 2454 7888887776 3689999999999999999999999999999999999884
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=106.06 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.+...+.+.+.. .++.+|||+|||+|.++..+++. | ..|+|+|.++.|+..++..+...
T Consensus 63 ~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~-------------- 124 (212)
T PRK13942 63 HMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL-------------- 124 (212)
T ss_pred HHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 344555555432 24679999999999999999987 3 58999999999999988744320
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
. ..++.++.||+.+.+.+.+.||+|++.....+ +.+.+.+.|||||.++
T Consensus 125 ------------------------g-~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~------~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 125 ------------------------G-YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD------IPKPLIEQLKDGGIMV 173 (212)
T ss_pred ------------------------C-CCCeEEEECCcccCCCcCCCcCEEEECCCccc------chHHHHHhhCCCcEEE
Confidence 0 13688999998876666689999876554432 2356778999999986
Q ss_pred E
Q psy3185 259 N 259 (298)
Q Consensus 259 n 259 (298)
.
T Consensus 174 i 174 (212)
T PRK13942 174 I 174 (212)
T ss_pred E
Confidence 4
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=106.98 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=87.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.-.++|+||||.|.++..||.+.-.++++|.|+..+..|+..+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 346899999999999999999988899999999999999874321
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEe---cccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCC-CC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---CFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN-ED 274 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~-~~ 274 (298)
..++++.++|+.+.. ++++||.||. .||++..+++..+++.+...|+|||.+|... +.+... .=
T Consensus 88 ------~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~-----~rd~~c~~w 155 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH-----ARDANCRRW 155 (201)
T ss_dssp -------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE-----E-HHHHHHT
T ss_pred ------CCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE-----ecCCccccc
Confidence 137888999987765 5789998765 3788888889999999999999999998421 111100 01
Q ss_pred ccCCCHHHHHHHHHh
Q psy3185 275 SIEPSYEVVKQVIQG 289 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~ 289 (298)
.+....+.+.+++.+
T Consensus 156 gh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 156 GHAAGAETVLEMLQE 170 (201)
T ss_dssp T-S--HHHHHHHHHH
T ss_pred CcccchHHHHHHHHH
Confidence 133467888888765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=109.38 Aligned_cols=124 Identities=16% Similarity=0.064 Sum_probs=90.3
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..++++ +.+|+|+|+|+.|+..++..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------------------------------------ 108 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------------------------------------ 108 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------------------------------------
Confidence 469999999999999998876 568999999999998876510
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEe--cccccCcc---h---------------HHHHHHHHHHhccCCeEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT--CFFIDCAN---N---------------IVSFIETIFNILKPGGIW 257 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t--~ffidta~---n---------------~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+..+|+.++. ...+||+|++ .|+..... + +...+.....+|+|+|..
T Consensus 109 --------~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~ 179 (279)
T PHA03411 109 --------PEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSA 179 (279)
T ss_pred --------cCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceE
Confidence 14567888888765 3468999998 46542221 1 235667777899999965
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+-+ |..... .+..|+.+|.+++++..||...
T Consensus 180 ~~~----yss~~~---y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 180 GFA----YSGRPY---YDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred EEE----Eecccc---ccccCCHHHHHHHHHhcCcEec
Confidence 432 332211 2345889999999999999863
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-11 Score=108.17 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=113.0
Q ss_pred cchHHHHHHHHHHH---------------hhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHH
Q psy3185 72 TDLEKVQTTLKQFV---------------RDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFE 136 (298)
Q Consensus 72 ~~~~~v~~~l~~~~---------------RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~e 136 (298)
.+..++.++|+++. -+|-+.-+=+ .|..++++ -.+.+|||+|||.|..++.
T Consensus 67 ~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~----------rl~p~l~~----L~gk~VLDIGC~nGY~~fr 132 (315)
T PF08003_consen 67 EQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWD----------RLLPHLPD----LKGKRVLDIGCNNGYYSFR 132 (315)
T ss_pred HHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHH----------HHHhhhCC----cCCCEEEEecCCCcHHHHH
Confidence 44566777777662 3454443333 34555542 3578999999999999999
Q ss_pred HHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccc
Q psy3185 137 IARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDF 215 (298)
Q Consensus 137 la~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf 215 (298)
++.+|.. |.|+|.|..-+...+++-.-... + ..+.+.---.
T Consensus 133 M~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----------------------------~---------~~~~~lplgv 174 (315)
T PF08003_consen 133 MLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----------------------------D---------PPVFELPLGV 174 (315)
T ss_pred HhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----------------------------C---------ccEEEcCcch
Confidence 9999986 99999999877665554211000 0 0111110112
Q ss_pred cccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE-----eccc---cc---cccCCCCCCccCCCHHHHH
Q psy3185 216 LQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN-----LGPL---LY---HYSNMLNEDSIEPSYEVVK 284 (298)
Q Consensus 216 ~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In-----~gPl---~y---~~~~~~~~~~~~ls~eEl~ 284 (298)
.+++. .++||+|++.=.|=+..++...|+.++..|+|||.+|- -|+- +. .++.++ .-..-+|..-|.
T Consensus 175 E~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~-nv~FiPs~~~L~ 252 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMR-NVWFIPSVAALK 252 (315)
T ss_pred hhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCC-ceEEeCCHHHHH
Confidence 23333 68999999998888889999999999999999999972 1221 11 011111 123347999999
Q ss_pred HHHHhCCCEEEE
Q psy3185 285 QVIQGLGFVYEV 296 (298)
Q Consensus 285 ~~~~~~GF~i~~ 296 (298)
.+++++||+-++
T Consensus 253 ~wl~r~gF~~v~ 264 (315)
T PF08003_consen 253 NWLERAGFKDVR 264 (315)
T ss_pred HHHHHcCCceEE
Confidence 999999998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=100.32 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=95.2
Q ss_pred CCCeEEEecccCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||.|.|...|.+ ++..++|+|+++..+..+-. +
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~---r---------------------------------- 55 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA---R---------------------------------- 55 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH---c----------------------------------
Confidence 478999999999999999987 68999999999998776543 1
Q ss_pred CCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE----Eec----------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI----NLG---------- 261 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I----n~g---------- 261 (298)
.++++++|..+-. +++++||.|+.+-.|.+..++...|+++.|+-| ..| |+|
T Consensus 56 ---------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~ 123 (193)
T PF07021_consen 56 ---------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLL 123 (193)
T ss_pred ---------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHh
Confidence 3446666665432 368999999999889988999999998877644 333 222
Q ss_pred ----c----ccccccCCCCCCcc-CCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 ----P----LLYHYSNMLNEDSI-EPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 ----P----l~y~~~~~~~~~~~-~ls~eEl~~~~~~~GF~i~~~ 297 (298)
| |-|.|.+. |.+ .+|..++.++.++.|++|++.
T Consensus 124 ~GrmPvt~~lPy~WYdT---PNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 124 RGRMPVTKALPYEWYDT---PNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred cCCCCCCCCCCCcccCC---CCcccccHHHHHHHHHHCCCEEEEE
Confidence 1 12333332 334 479999999999999999864
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-11 Score=109.13 Aligned_cols=152 Identities=18% Similarity=0.070 Sum_probs=93.5
Q ss_pred HhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHH
Q psy3185 85 VRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 85 ~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l 161 (298)
+|.|++-...= -..|+.-|... +. .++.+|||+|||+|..+..+|+. | -.|+|+|+|+.|+.....+.
T Consensus 107 yR~w~p~rSKl----aa~i~~g~~~l-~I----kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 107 YRVWNPFRSKL----AAAIIGGVANI-PI----KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred eeeeCCcccHH----HHHHHCCccee-cc----CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 89999854222 11244444433 21 34679999999999999999987 3 46999999998763222211
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcc
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCAN 238 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~ 238 (298)
.. ..|+..+.+|+..- ....+++|+|++... ...
T Consensus 178 ---k~--------------------------------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pd 214 (293)
T PTZ00146 178 ---KK--------------------------------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPD 214 (293)
T ss_pred ---hh--------------------------------------cCCCEEEECCccChhhhhcccCCCCEEEEeCC--Ccc
Confidence 00 02455566666431 112357999977653 222
Q ss_pred hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHH----HHHHHhCCCEEEE
Q psy3185 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVV----KQVIQGLGFVYEV 296 (298)
Q Consensus 239 n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl----~~~~~~~GF~i~~ 296 (298)
+...++.+++++|||||+++.. +.... ....++++++ .+++++.||+++.
T Consensus 215 q~~il~~na~r~LKpGG~~vI~----ika~~----id~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 215 QARIVALNAQYFLKNGGHFIIS----IKANC----IDSTAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred hHHHHHHHHHHhccCCCEEEEE----Eeccc----cccCCCHHHHHHHHHHHHHHcCCceEE
Confidence 3345677899999999999852 33221 1222334443 3888999999765
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=101.97 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=78.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+...+...+.. .++.+|||+|||+|.++..+++.+..|+++|.|+.|+..++..+.+.
T Consensus 66 ~~~~l~~~l~~----~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~------------------ 123 (212)
T PRK00312 66 MVARMTELLEL----KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL------------------ 123 (212)
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC------------------
Confidence 33444444432 24679999999999999999988778999999999999887644320
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. -.++++..+|+.+.....++||+|+....+. .+.+.+.+.|||||.++.
T Consensus 124 ------------------~---~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~------~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 124 ------------------G---LHNVSVRHGDGWKGWPAYAPFDRILVTAAAP------EIPRALLEQLKEGGILVA 173 (212)
T ss_pred ------------------C---CCceEEEECCcccCCCcCCCcCEEEEccCch------hhhHHHHHhcCCCcEEEE
Confidence 0 0257788888766544457899988765332 234667899999999863
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=97.04 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=80.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
-+++.+... ...+|||+|||+|-++..+++++.. |+++|.|+.++..++.-... +
T Consensus 22 lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n----------- 78 (170)
T PF05175_consen 22 LLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----N----------- 78 (170)
T ss_dssp HHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----T-----------
T ss_pred HHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----c-----------
Confidence 455666654 2569999999999999999999765 99999999999988762211 0
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc-----hHHHHHHHHHHhccCC
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN-----NIVSFIETIFNILKPG 254 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~-----n~~~yl~~I~~~LkpG 254 (298)
.+ .++.+..+|+.+... +++||+|++.-=++... -+.++++...+.||||
T Consensus 79 ---------------------~~---~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 79 ---------------------GL---ENVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp ---------------------TC---TTEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred ---------------------Cc---ccccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 00 137788888876543 68999999974333222 3567899999999999
Q ss_pred eEEEE
Q psy3185 255 GIWIN 259 (298)
Q Consensus 255 G~~In 259 (298)
|.++-
T Consensus 134 G~l~l 138 (170)
T PF05175_consen 134 GRLFL 138 (170)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98853
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=87.37 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=78.7
Q ss_pred eEEEecccCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
+|||+|||.|.++..+++ .+..++++|.|+.++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 43 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------------------------------------- 43 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-------------------------------------
Confidence 589999999999999998 567899999999998877641110
Q ss_pred CCCCCCCeeEEecccccccc-CCCceeEEEecccccC-cchHHHHHHHHHHhccCCeEEEE
Q psy3185 201 DYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC-ANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt-a~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.+... ..++||+|++...++. ......+++.+.+.|||||.++-
T Consensus 44 --~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 44 --LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --ccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 001356677788777653 4578999999988877 77888999999999999999874
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=102.03 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=68.3
Q ss_pred CeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe--cc----c---c--ccccCC-----
Q psy3185 207 DFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL--GP----L---L--YHYSNM----- 270 (298)
Q Consensus 207 ~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~--gP----l---~--y~~~~~----- 270 (298)
+++++.||+.+++.++++||+|++.|.+++.++....+++++++|||||.++.. ++ + . |.....
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVA 106 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhh
Confidence 688999999999888889999999999999999999999999999999999743 11 0 0 000000
Q ss_pred -----CCC-----Cc--cCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 -----LNE-----DS--IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 -----~~~-----~~--~~ls~eEl~~~~~~~GF~i~~ 296 (298)
... .+ ..++.+|+.++++++||+.++
T Consensus 107 ~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~ 144 (160)
T PLN02232 107 TVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSAC 144 (160)
T ss_pred HHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcce
Confidence 000 11 236899999999999998653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-11 Score=104.05 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=93.0
Q ss_pred ChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccc
Q psy3185 92 GSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNV 169 (298)
Q Consensus 92 g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~ 169 (298)
.+.||.. |..+ |..++|. ....+|.|+|||+|..+..|+++ +..++|+|-|+.||..|+..
T Consensus 11 F~~eRtR---Pa~d-Lla~Vp~----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------- 73 (257)
T COG4106 11 FEDERTR---PARD-LLARVPL----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------- 73 (257)
T ss_pred HHHhccC---cHHH-HHhhCCc----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---------
Confidence 3445553 3333 4455664 34679999999999999999998 67899999999999988652
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHH
Q psy3185 170 YKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFN 249 (298)
Q Consensus 170 ~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~ 249 (298)
. .+.++..||..++. ++...|+++++-.+++.++-.+.+..+-.
T Consensus 74 ------------------------l-----------p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~ 117 (257)
T COG4106 74 ------------------------L-----------PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVS 117 (257)
T ss_pred ------------------------C-----------CCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHH
Confidence 1 25678889988885 46789999999999999999999999999
Q ss_pred hccCCeEEEE
Q psy3185 250 ILKPGGIWIN 259 (298)
Q Consensus 250 ~LkpGG~~In 259 (298)
.|.|||++..
T Consensus 118 ~L~Pgg~LAV 127 (257)
T COG4106 118 QLAPGGVLAV 127 (257)
T ss_pred hhCCCceEEE
Confidence 9999999863
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=103.12 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhhccCChH-------HHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----CCe
Q psy3185 75 EKVQTTLKQFVRDWSEEGSE-------ERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR----GYV 143 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~~g~~-------ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G~~ 143 (298)
.++.-..++-.+-|+.-+.. .|. ++..+.-++++... ....+||++|||.|...+.|.+- +..
T Consensus 26 ~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~----wL~~Efpel~~~~~--~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 26 EEVVKYEREASKYWDTFYKIHENRFFKDRN----WLLREFPELLPVDE--KSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hhhhhhhcchhhhhhhhhhhccccccchhH----HHHHhhHHhhCccc--cChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 34444555666667753321 343 46666666666432 22338999999999999999875 477
Q ss_pred EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCC
Q psy3185 144 CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223 (298)
Q Consensus 144 v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~ 223 (298)
|.+.|+|+..+...+. + .+...-...+|+.. +.. +-...+.+.+
T Consensus 100 v~acDfsp~Ai~~vk~---~-~~~~e~~~~afv~D------------------lt~--------------~~~~~~~~~~ 143 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKK---S-SGYDESRVEAFVWD------------------LTS--------------PSLKEPPEEG 143 (264)
T ss_pred EEEcCCChHHHHHHHh---c-cccchhhhccccee------------------ccc--------------hhccCCCCcC
Confidence 9999999998876554 1 11112222333331 110 0012224579
Q ss_pred ceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEe--c--c---cccccc---------CCCCCCccCCCHHHHHH
Q psy3185 224 KWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINL--G--P---LLYHYS---------NMLNEDSIEPSYEVVKQ 285 (298)
Q Consensus 224 ~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~--g--P---l~y~~~---------~~~~~~~~~ls~eEl~~ 285 (298)
++|+|+..|.|- ..+.+...|+.++++|||||.++.- | . +.++-. -..+.....++.+||..
T Consensus 144 svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~ 223 (264)
T KOG2361|consen 144 SVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDE 223 (264)
T ss_pred ccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHH
Confidence 999999888775 4456788999999999999998742 1 1 111100 00123556799999999
Q ss_pred HHHhCCCEEEE
Q psy3185 286 VIQGLGFVYEV 296 (298)
Q Consensus 286 ~~~~~GF~i~~ 296 (298)
+++++||..+.
T Consensus 224 ~f~~agf~~~~ 234 (264)
T KOG2361|consen 224 LFTKAGFEEVQ 234 (264)
T ss_pred HHHhcccchhc
Confidence 99999998654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-10 Score=100.55 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=87.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..++... ..|+|+|.|+.|+..++.....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 45799999999999999999885 7899999999999988763210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-ccc-------------------------CcchHHHHHHHHHHh
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FID-------------------------CANNIVSFIETIFNI 250 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fid-------------------------ta~n~~~yl~~I~~~ 250 (298)
....++.+..+|+.+.. .+++||+|++.. ++. .......+++.+.++
T Consensus 155 ------~~~~~i~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred ------CCCCcEEEEEccccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 00136778888875543 257899998742 111 112235678888899
Q ss_pred ccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 251 LKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 251 LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|||||+++.- .++. ..+++..++.+.||.-+
T Consensus 228 Lk~gG~l~~e----~g~~----------~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 228 LKPGGWLLLE----IGYD----------QGEAVRALLAAAGFADV 258 (275)
T ss_pred cccCCEEEEE----ECch----------HHHHHHHHHHhCCCcee
Confidence 9999988731 1111 14678999999999643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=97.73 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+...+...++. .++.+|||+|||+|.++.++|+. +..|+|+|.|+.|+..++..++..
T Consensus 28 v~~~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~---------------- 87 (196)
T PRK07402 28 VRLLLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF---------------- 87 (196)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------
Confidence 33444555542 24679999999999999999875 478999999999999887633210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.+..+|+.+.+. ....+|.|+. +...++..+++.++++|||||.++.
T Consensus 88 --------------------~~---~~v~~~~~d~~~~~~~~~~~~d~v~~----~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 88 --------------------GV---KNVEVIEGSAPECLAQLAPAPDRVCI----EGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred --------------------CC---CCeEEEECchHHHHhhCCCCCCEEEE----ECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 00 256677777654321 1234565532 3345677899999999999999885
Q ss_pred ec
Q psy3185 260 LG 261 (298)
Q Consensus 260 ~g 261 (298)
..
T Consensus 141 ~~ 142 (196)
T PRK07402 141 TA 142 (196)
T ss_pred Ee
Confidence 43
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-10 Score=107.45 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=98.7
Q ss_pred cchHHHHHHHHHHHhhhccCChHHH--------hhhhHHHHH--HHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEER--------KTCYEPIIS--EILARFPPETINPKDVNILVPGAGLGRLAFEIARR- 140 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER--------~~~~~~i~~--~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~- 140 (298)
+....++.+|..++..|..+--... ...-.++++ .+.+.+.. ..+..+||+|||+|+.+..+|++
T Consensus 69 ~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~p~vLEIGcGsG~~ll~lA~~~ 144 (390)
T PRK14121 69 SKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISK----NQEKILIEIGFGSGRHLLYQAKNN 144 (390)
T ss_pred cchHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcC----CCCCeEEEEcCcccHHHHHHHHhC
Confidence 4567889999999988863211111 001112332 33333331 24569999999999999999998
Q ss_pred -CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc-
Q psy3185 141 -GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV- 218 (298)
Q Consensus 141 -G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~- 218 (298)
+..++|+|++..|+..+...... . . -.|+.++.+|...+
T Consensus 145 P~~~~iGIEI~~~~i~~a~~ka~~---~---------------------------------g---L~NV~~i~~DA~~ll 185 (390)
T PRK14121 145 PNKLFIGIEIHTPSIEQVLKQIEL---L---------------------------------N---LKNLLIINYDARLLL 185 (390)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH---c---------------------------------C---CCcEEEEECCHHHhh
Confidence 46799999999999877652211 0 0 13788999998654
Q ss_pred -ccCCCceeEEEecccccCcch------HHHHHHHHHHhccCCeEEEE
Q psy3185 219 -YVHPNKWDCVATCFFIDCANN------IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 219 -~~~~~~fD~V~t~ffidta~n------~~~yl~~I~~~LkpGG~~In 259 (298)
..+++++|.|++.|-..+... ...+++.++++|||||.+.-
T Consensus 186 ~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred hhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 245789999988764332211 15799999999999999864
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=107.84 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=80.6
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..|.+++|.. ...+|||+|||+|.++..+++++ .+|+++|.|+.|+..++.-+.. +.
T Consensus 218 rllL~~lp~~----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n~------------- 276 (378)
T PRK15001 218 RFFMQHLPEN----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM------------- 276 (378)
T ss_pred HHHHHhCCcc----cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC-------------
Confidence 3456666632 24699999999999999999984 6899999999999998762211 00
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--cccc---CcchHHHHHHHHHHhccCCeEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFID---CANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffid---ta~n~~~yl~~I~~~LkpGG~~ 257 (298)
+ ....++.+..+|..+.. ++++||+|+++ |+.. +.....+.++.++++|||||.+
T Consensus 277 ------------~-------~~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 277 ------------P-------EALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred ------------c-------ccCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 0 00125677788875432 34689999996 4322 1122457899999999999988
Q ss_pred EEe
Q psy3185 258 INL 260 (298)
Q Consensus 258 In~ 260 (298)
+.+
T Consensus 337 ~iV 339 (378)
T PRK15001 337 YIV 339 (378)
T ss_pred EEE
Confidence 755
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=107.41 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=74.3
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..+++++ ..|+++|.|..|+..++.-+.. +.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n~---------------------------- 244 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----NG---------------------------- 244 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC----------------------------
Confidence 4589999999999999999985 4799999999999998863321 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc----C-cchHHHHHHHHHHhccCCeEEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID----C-ANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid----t-a~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
....+..+|.... .+++||+|++..-++ + ......+++.+.+.|||||.++.+.
T Consensus 245 --------l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 245 --------LEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred --------CCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 0123455665442 257899999975333 2 3446789999999999999987544
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-10 Score=102.93 Aligned_cols=122 Identities=14% Similarity=0.209 Sum_probs=87.1
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ +..|+|+|+|+.|+..|+.-....
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--------------------------------- 168 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--------------------------------- 168 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 468999999999999999987 468999999999999988632210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--cc----ccC-------------------cchHHHHHHHHHHhcc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF----IDC-------------------ANNIVSFIETIFNILK 252 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff----idt-------------------a~n~~~yl~~I~~~Lk 252 (298)
.+ ..++.+..+|+.+.. ++++||+|++. |. +++ ..-....++.+.++||
T Consensus 169 ---~~--~~~i~~~~~D~~~~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 169 ---GL--EDRVTLIQSDLFAAL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred ---CC--CCcEEEEECchhhcc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 00 136788889976543 34689999985 11 000 0123457888889999
Q ss_pred CCeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 253 PGGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 253 pGG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|||.++. +| .+.+++.+++.+.||....
T Consensus 243 ~gG~l~~e~g----------------~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 243 ENGVLVVEVG----------------NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCEEEEEEC----------------cCHHHHHHHHHhCCCceee
Confidence 9998863 22 1356888888888887643
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=103.18 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=90.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
-.++.|.++.. ++.+|||+|||+|-|+..-++.|. .|+|+|+++..+..|+.-.. .|..
T Consensus 150 lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~----~N~~---------- 209 (295)
T PF06325_consen 150 LCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAE----LNGV---------- 209 (295)
T ss_dssp HHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHH----HTT-----------
T ss_pred HHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHH----HcCC----------
Confidence 35666666643 467999999999999999999998 49999999999988876211 1110
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
. .++.+. ...+. ..++||+|+.+-. +.-+...+..+.++|||||++|-.
T Consensus 210 ----------------------~--~~~~v~--~~~~~--~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 210 ----------------------E--DRIEVS--LSEDL--VEGKFDLVVANIL---ADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp ----------------------T--TCEEES--CTSCT--CCS-EEEEEEES----HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ----------------------C--eeEEEE--Eeccc--ccccCCEEEECCC---HHHHHHHHHHHHHhhCCCCEEEEc
Confidence 0 122111 11111 2489999998753 334567888999999999999977
Q ss_pred ccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 261 GPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 261 gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|=+. .. .+++.+.+++ ||+++..
T Consensus 259 GIl~--~~-----------~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 259 GILE--EQ-----------EDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp EEEG--GG-----------HHHHHHHHHT-TEEEEEE
T ss_pred cccH--HH-----------HHHHHHHHHC-CCEEEEE
Confidence 7432 22 6889999987 9998754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-10 Score=106.44 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=84.3
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++......
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~--------------------------------- 298 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL--------------------------------- 298 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 458999999999999999975 578999999999999988632210
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecc-cccC--------------------cch----HHHHHHHHHHhc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCF-FIDC--------------------ANN----IVSFIETIFNIL 251 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~f-fidt--------------------a~n----~~~yl~~I~~~L 251 (298)
..++.+..+|+.+.. +..++||+|+++- ++.+ -++ ....++.+.+.|
T Consensus 299 -------g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 299 -------GARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred -------CCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 125677888876532 2246799988852 2211 111 234566667899
Q ss_pred cCCeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 252 KPGGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 252 kpGG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+|||.++. +|. . -.+++.+++++.||..+
T Consensus 372 kpgG~lilEiG~-----~----------Q~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 372 AEGGFLLLEHGF-----D----------QGAAVRGVLAENGFSGV 401 (423)
T ss_pred CCCcEEEEEECc-----c----------HHHHHHHHHHHCCCcEE
Confidence 99998763 221 1 16789999999999754
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=100.01 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++.-++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---------------------------------- 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---------------------------------- 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 458999999999999999976 56899999999999988762211
Q ss_pred CCCCCCCCCCeeEEecccccccc--CCCceeEEEecc-cccC-------------------------cchHHHHHHHHHH
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCF-FIDC-------------------------ANNIVSFIETIFN 249 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~f-fidt-------------------------a~n~~~yl~~I~~ 249 (298)
.+..+..+|+.+... ..++||+|++.- ++.+ ..-+...++...+
T Consensus 133 --------~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~ 204 (251)
T TIGR03704 133 --------AGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPD 204 (251)
T ss_pred --------cCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHH
Confidence 012456666654322 135799888752 2211 0113467777779
Q ss_pred hccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 250 ILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 250 ~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+|||||.++-. ++.. ..+++.+++++.||....
T Consensus 205 ~L~~gG~l~l~----~~~~----------~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 205 WLAPGGHLLVE----TSER----------QAPLAVEAFARAGLIARV 237 (251)
T ss_pred hcCCCCEEEEE----ECcc----------hHHHHHHHHHHCCCCcee
Confidence 99999988732 2211 157899999999997653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-10 Score=102.56 Aligned_cols=134 Identities=24% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.|+++.. ++.+|||+|||+|-|+...++.|.. |.|+|+.+..+.+|+. |. . .|... +.
T Consensus 152 cL~~Le~~~~------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na-~-~N~v~--~~------ 213 (300)
T COG2264 152 CLEALEKLLK------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NA-R-LNGVE--LL------ 213 (300)
T ss_pred HHHHHHHhhc------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HH-H-HcCCc--hh------
Confidence 4566666543 5789999999999999999999986 9999999999999876 21 1 11110 00
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
......+-.+. ...++||+||.+- -|.-+......|.++|||||++|-.|
T Consensus 214 --------------------------~~~~~~~~~~~-~~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 214 --------------------------VQAKGFLLLEV-PENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --------------------------hhcccccchhh-cccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 00001111111 1236999999875 24456789999999999999999777
Q ss_pred cccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 PLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 Pl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
=+. .. .+.+.+.+++.||+++..
T Consensus 264 Il~-~q------------~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 264 ILE-DQ------------AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred ehH-hH------------HHHHHHHHHhCCCeEeEE
Confidence 321 11 678899999999999753
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=96.00 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHH
Q psy3185 74 LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 74 ~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~M 153 (298)
++.-.+-+++-+..|-...-. -|+++|.+. | ++..|-|.|||-+++|..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nPvd-------~iI~~l~~~-~------~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNPVD-------VIIEWLKKR-P------KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-HHH-------HHHHHHCTS--------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-
T ss_pred HHHHHHHHHHHHhcCCCCcHH-------HHHHHHHhc-C------CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-
Confidence 456677888888889876533 277777642 2 3578999999999999664 35667777776431
Q ss_pred HHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc
Q psy3185 154 LFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF 233 (298)
Q Consensus 154 l~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff 233 (298)
+-.++++|...+|.++++.|+||.|..
T Consensus 105 -----------------------------------------------------n~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 105 -----------------------------------------------------NPRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp -----------------------------------------------------STTEEES-TTS-S--TT-EEEEEEES-
T ss_pred -----------------------------------------------------CCCEEEecCccCcCCCCceeEEEEEhh
Confidence 112677888888888999999988876
Q ss_pred ccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 234 IDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 234 idta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|- ..|..+||++.+|+|||||.+....- .|-.-+.++..+.+++.||++...
T Consensus 132 LM-GTn~~~fi~EA~RvLK~~G~L~IAEV-----------~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 132 LM-GTNWPDFIREANRVLKPGGILKIAEV-----------KSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ---SS-HHHHHHHHHHHEEEEEEEEEEEE-----------GGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred hh-CCCcHHHHHHHHheeccCcEEEEEEe-----------cccCcCHHHHHHHHHHCCCeEEec
Confidence 53 35899999999999999999874321 122226899999999999999764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=99.45 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..++++. ..|+|+|+|+ |. . +
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~------------------------------~- 90 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P------------------------------I- 90 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C------------------------------C-
Confidence 46799999999999999999873 4799999998 21 0 0
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--------cCCCceeEEEecccccCcc----h-------HHHHHHHHHHhccCCeE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--------VHPNKWDCVATCFFIDCAN----N-------IVSFIETIFNILKPGGI 256 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--------~~~~~fD~V~t~ffidta~----n-------~~~yl~~I~~~LkpGG~ 256 (298)
.++.+..||+.+.. ...++||+|++.+..++.. + ....++.+.++|||||.
T Consensus 91 ----------~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 91 ----------VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred ----------CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 14667888887742 2467899999865433221 1 24689999999999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
++.
T Consensus 161 ~vi 163 (209)
T PRK11188 161 FVV 163 (209)
T ss_pred EEE
Confidence 985
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=97.75 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
...+|||+|||+|-++..+|++ . ..++|||+.+.|...|+.-.+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--------------------------------- 90 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--------------------------------- 90 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh---------------------------------
Confidence 3789999999999999999998 5 6799999999999988762211
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEec--ccccCc----------------chHHHHHHHHHHhccCCeE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATC--FFIDCA----------------NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~--ffidta----------------~n~~~yl~~I~~~LkpGG~ 256 (298)
+ +-..++++..+|+.++.. ...+||+|+++ ||=... -++.++++...++|||||.
T Consensus 91 -n----~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 91 -N----PLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred -C----cchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCE
Confidence 0 012478999999988864 23679999986 553211 2466899999999999999
Q ss_pred EEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.-+-|- -...||..++.+.+|...+
T Consensus 166 l~~V~r~--------------erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 166 LAFVHRP--------------ERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EEEEecH--------------HHHHHHHHHHHhcCCCceE
Confidence 8755331 1267778888888887653
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-09 Score=98.95 Aligned_cols=120 Identities=13% Similarity=0.209 Sum_probs=84.5
Q ss_pred CeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+|||+|||+|.++..+++. +..|+|+|+|+.|+..|+.-....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~---------------------------------- 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH---------------------------------- 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------------------------
Confidence 68999999999999999987 468999999999999988632210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEec--cc----cc-------C------------cchHHHHHHHHHHhccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF----ID-------C------------ANNIVSFIETIFNILKP 253 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff----id-------t------------a~n~~~yl~~I~~~Lkp 253 (298)
.+ ..++.+..+|+.+.. ++++||+|++. |. +. + ..-....++.+.++|||
T Consensus 181 --~l--~~~i~~~~~D~~~~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p 255 (307)
T PRK11805 181 --GL--EDRVTLIESDLFAAL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE 255 (307)
T ss_pred --CC--CCcEEEEECchhhhC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC
Confidence 00 135788899976643 34689999875 11 00 0 11234678888899999
Q ss_pred CeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 254 GGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 254 GG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
||.++. +|+ +.+++.+++.+.||...
T Consensus 256 gG~l~~E~g~----------------~~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 256 DGVLVVEVGN----------------SRVHLEEAYPDVPFTWL 282 (307)
T ss_pred CCEEEEEECc----------------CHHHHHHHHhhCCCEEE
Confidence 998873 221 24567778877777543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=101.79 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||.|.++.++++. +. +|+++|+++.|+..++..+....
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~------------------------------- 124 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA------------------------------- 124 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhc-------------------------------
Confidence 3569999999999999999987 54 69999999999999876432100
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC--cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC--ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt--a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
. ......++.++.+|...+.. .+++||+|++-.+-.. ...+ .++++.++++|||||+++.
T Consensus 125 --~-~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 125 --G-GAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred --c-ccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0 00112478899999887643 3579999987532211 1122 5789999999999999985
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=93.29 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=103.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
+||++.|+++++.. +.+||++|||||--+..+|+. ...-+--|.....+.-.+.-....
T Consensus 12 ~pIl~vL~~~l~~~-----~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-------------- 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-----GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-------------- 72 (204)
T ss_pred hHHHHHHHHHhCcc-----CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--------------
Confidence 58999999999842 336999999999999999988 355677788877642222100010
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~ 256 (298)
...+...++.+ |+.....+ .. + ......+.||+|+|+-+||- -+.....|+...++|+|||.
T Consensus 73 -----~~~Nv~~P~~l-Dv~~~~w~------~~-~---~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 73 -----GLPNVRPPLAL-DVSAPPWP------WE-L---PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGL 136 (204)
T ss_pred -----CCcccCCCeEe-ecCCCCCc------cc-c---ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCE
Confidence 00111122222 22110000 00 0 00013579999999988773 34567899999999999999
Q ss_pred EEEeccccccccCCC------------CCCccCC-CHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYSNML------------NEDSIEP-SYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~~~~------------~~~~~~l-s~eEl~~~~~~~GF~i~~ 296 (298)
++..||..++-.-.+ ..+...+ ..++|.++..+.|++++.
T Consensus 137 L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~ 189 (204)
T PF06080_consen 137 LFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEE 189 (204)
T ss_pred EEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCc
Confidence 999999887522111 1233443 689999999999998754
|
The function of this family is unknown. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=100.79 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCCeEEEecccCcHH-HHHHHH-c--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRL-AFEIAR-R--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grl-a~ela~-~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
.+.+||++|||-|.+ +.-+++ . +-.++|+|.|+.|+..|+......
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------------------------------ 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------------------------------ 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------------------------------
Confidence 467999999997755 444443 3 346999999999999998754210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC-cchHHHHHHHHHHhccCCeEEEE
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC-ANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt-a~n~~~yl~~I~~~LkpGG~~In 259 (298)
+++ ..++.|..+|..+.....+.||+|++...++. .++..++++.+++.|||||+++-
T Consensus 173 ~gL-------~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 PDL-------SKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred cCc-------cCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 011 24789999999887544578999999854553 47889999999999999999984
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=92.78 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=69.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++.++++++..|+|+|.|+.|+..++..+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456999999999999999999988999999999999887652210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc-hHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN-NIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~-n~~~yl~~I~~~LkpGG~~I 258 (298)
..++.++.+|+.++...+++||.|+++.-.+... -+..+++. ..+.++|+++
T Consensus 58 ------~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCccccCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEE
Confidence 1367889999998866556799999875333222 22223322 1244777776
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=101.77 Aligned_cols=96 Identities=22% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+|+.. ..|+|+|.|+.|+..|+..+.+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------------------------------- 128 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------------------------------- 128 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 46799999999999999999863 25999999999999887643220
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ..++.+..||+.+...+.+.||+|++.+.++. + .+.+.+.|||||.++.
T Consensus 129 -------g-~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~---i---p~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 129 -------G-IENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE---V---PETWFTQLKEGGRVIV 178 (322)
T ss_pred -------C-CCcEEEEeCChhhcccccCCccEEEECCchHH---h---HHHHHHhcCCCCEEEE
Confidence 0 02577888998776555578999998764432 2 3356789999999764
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=96.89 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=82.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
...-|||+|||+|--+..|...|+...|+|+|+.||..|... ..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--e~e--------------------------------- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--ELE--------------------------------- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--hhh---------------------------------
Confidence 467899999999999999999999999999999999988641 000
Q ss_pred CCCCCCCCCeeEEeccc-cccccCCCceeEEEeccccc-----------CcchHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 199 TSDYNDDCDFSMAAGDF-LQVYVHPNKWDCVATCFFID-----------CANNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf-~~~~~~~~~fD~V~t~ffid-----------ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
++ +..+|. +-+++.+++||.|++.-.|. +...+..|+.+++.+|++|+..+- -|-
T Consensus 95 -------gd--lil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----QfY 161 (270)
T KOG1541|consen 95 -------GD--LILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----QFY 161 (270)
T ss_pred -------cC--eeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----Eec
Confidence 11 233333 23556789999887654332 223456789999999999999872 121
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCC
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF 292 (298)
.+ .+=..|-|.+-..++||
T Consensus 162 pe-------n~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 162 PE-------NEAQIDMIMQQAMKAGF 180 (270)
T ss_pred cc-------chHHHHHHHHHHHhhcc
Confidence 11 11224556666667776
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=99.02 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=93.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
-.++||+|||||-.+-.|-.+--..+|+|+|..|+..|.. |. +|-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~e---Kg-------~YD------------------------- 170 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHE---KG-------LYD------------------------- 170 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHh---cc-------chH-------------------------
Confidence 5689999999999999999998899999999999998876 21 110
Q ss_pred CCCCCCCCeeEEecc---ccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe---ccccccccCCCCC
Q psy3185 200 SDYNDDCDFSMAAGD---FLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL---GPLLYHYSNMLNE 273 (298)
Q Consensus 200 ~~~~~~~~~~~~~gD---f~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~---gPl~y~~~~~~~~ 273 (298)
.+.++| |.+. ..++.||.|+..-++-..-++...+-....+|+|||.++.. .|--+.|.- .
T Consensus 171 ---------~L~~Aea~~Fl~~-~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l---~ 237 (287)
T COG4976 171 ---------TLYVAEAVLFLED-LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL---G 237 (287)
T ss_pred ---------HHHHHHHHHHhhh-ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec---c
Confidence 011122 4332 24689999988776666677788889999999999999842 121122211 2
Q ss_pred CccCC--CHHHHHHHHHhCCCEEEEe
Q psy3185 274 DSIEP--SYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 274 ~~~~l--s~eEl~~~~~~~GF~i~~~ 297 (298)
++..+ +..-++..+...||+++..
T Consensus 238 ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 238 PSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred hhhhhccchHHHHHHHHhcCceEEEe
Confidence 33333 5778999999999999753
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-09 Score=95.35 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCeEEEecccCcHHHHHHHHc-----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+.+|||||||+|.++..++++ ...|+|+|+++.|+..|+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------------------------------- 96 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------------------------------- 96 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------------------------------
Confidence 569999999999999999874 357999999999999887511
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCcc---------h-HHHHHHHHHHhccCCeEEE--Ee
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCAN---------N-IVSFIETIFNILKPGGIWI--NL 260 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta~---------n-~~~yl~~I~~~LkpGG~~I--n~ 260 (298)
.++.+..+|+..... +++||+|+++ |+-.... . ...+++...++++||+.++ ++
T Consensus 97 -----------~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 97 -----------PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred -----------cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 134567778766543 5689999987 5532222 1 3458888889888888644 33
Q ss_pred ccccccccCCCCCCcc----CCCHHHHHHHHHhCCCEE
Q psy3185 261 GPLLYHYSNMLNEDSI----EPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 261 gPl~y~~~~~~~~~~~----~ls~eEl~~~~~~~GF~i 294 (298)
.|.-|... ++. ..+-.+..++.++.|...
T Consensus 165 ~~~~y~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 165 ANFRYSGT-----HYFRQDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred ccCcccCc-----cceeeccCcccHHHHHHHHhcCeee
Confidence 34334322 222 244566777777777654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=95.37 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=90.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
...++||.|||.||.+..|-.. .-.|..+|.++..+..|+.-+... . .
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~---~--------------------------- 103 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-N---P--------------------------- 103 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-G---C---------------------------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-C---C---------------------------
Confidence 4679999999999999877544 446999999999999987632210 0 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEE---Eeccc---cccccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWI---NLGPL---LYHYSN 269 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~I---n~gPl---~y~~~~ 269 (298)
.-..+...-..++.+++++||+|.+-+.+- |-.++.+||++....|+|||+.| |+.+- .|...
T Consensus 104 --------~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~- 174 (218)
T PF05891_consen 104 --------RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE- 174 (218)
T ss_dssp --------CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT-
T ss_pred --------CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc-
Confidence 012233333344445568999999877654 56779999999999999999887 55432 22222
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..|+-=|.+.++++++++|++++++
T Consensus 175 ---DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 175 ---DSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp ---TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ---cCeeecCHHHHHHHHHHcCCEEEEe
Confidence 3578888999999999999999975
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=94.52 Aligned_cols=93 Identities=18% Similarity=0.137 Sum_probs=64.3
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+++.+|||+|||+|.++..++++. ..|+|+|+|+.| . .
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---~------------------------------- 71 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---I------------------------------- 71 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---C-------------------------------
Confidence 357799999999999999998874 359999999865 0 0
Q ss_pred CCCCCCCCCCCCCeeEEeccccccc--------cCCCceeEEEeccc--------ccCc---chHHHHHHHHHHhccCCe
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVY--------VHPNKWDCVATCFF--------IDCA---NNIVSFIETIFNILKPGG 255 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~--------~~~~~fD~V~t~ff--------idta---~n~~~yl~~I~~~LkpGG 255 (298)
.++.+..+|+.+.. ...++||+|++... ++.. .++...++.++++|||||
T Consensus 72 -----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG 140 (188)
T TIGR00438 72 -----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKG 140 (188)
T ss_pred -----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCC
Confidence 02334445544321 13568999886321 2221 234678999999999999
Q ss_pred EEEEe
Q psy3185 256 IWINL 260 (298)
Q Consensus 256 ~~In~ 260 (298)
+++..
T Consensus 141 ~lvi~ 145 (188)
T TIGR00438 141 NFVVK 145 (188)
T ss_pred EEEEE
Confidence 99853
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-10 Score=98.97 Aligned_cols=172 Identities=18% Similarity=0.177 Sum_probs=117.4
Q ss_pred HHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCC--CCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHH
Q psy3185 80 TLKQFVRDWSEEGSEERKTCYEPIISEILARFPPE--TINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFA 156 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~--~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~ 156 (298)
-++.+-|||.+--..... +++.+++...+-.. ...+....++|+|||.|.++..|...|. +.+-+|.|+.|+..
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 466777888764322221 23333332211000 1123456899999999999999999986 49999999999987
Q ss_pred HHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC
Q psy3185 157 SNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC 236 (298)
Q Consensus 157 a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt 236 (298)
++. ++. +...++...+|=..+.+.++++|.|+|+.-+|+
T Consensus 111 ~~~----~qd-------------------------------------p~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 111 CRD----AQD-------------------------------------PSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhc----cCC-------------------------------------CceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 763 211 113566778887777778899999999999999
Q ss_pred cchHHHHHHHHHHhccCCeEEEE---eccccccccCC--------CCC--CccC-CC-HHHHHHHHHhCCCEEE
Q psy3185 237 ANNIVSFIETIFNILKPGGIWIN---LGPLLYHYSNM--------LNE--DSIE-PS-YEVVKQVIQGLGFVYE 295 (298)
Q Consensus 237 a~n~~~yl~~I~~~LkpGG~~In---~gPl~y~~~~~--------~~~--~~~~-ls-~eEl~~~~~~~GF~i~ 295 (298)
..++...+..++..|||.|.||- -|.-+|...-. .+. +.+. ++ ..++-.++..+||...
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 99999999999999999999983 24444532210 111 2222 22 4788899999999865
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=94.08 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=83.6
Q ss_pred CeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+|||+|||+|.++..++..+ ..|+|+|.|+.|+..++.-....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~---------------------------------- 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN---------------------------------- 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 689999999999999999874 58999999999999888632110
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccC------------------------cchHHHHHHHHHHhccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDC------------------------ANNIVSFIETIFNILKP 253 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidt------------------------a~n~~~yl~~I~~~Lkp 253 (298)
.+ ..++.++.+|+.+.. ..++||+|++.- ++.+ ...+..+++.+.+.|+|
T Consensus 162 --~~--~~~v~~~~~d~~~~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~ 236 (284)
T TIGR00536 162 --QL--EHRVEFIQSNLFEPL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP 236 (284)
T ss_pred --CC--CCcEEEEECchhccC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 00 124778888886643 234899998851 1110 11355788899999999
Q ss_pred CeEEEE-eccccccccCCCCCCccCCCHHHHHHHHH-hCCCEE
Q psy3185 254 GGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQ-GLGFVY 294 (298)
Q Consensus 254 GG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~-~~GF~i 294 (298)
||+++. +|+ . -.+++.+++. +.||.-
T Consensus 237 gG~l~~e~g~---~------------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 237 NGFLVCEIGN---W------------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred CCEEEEEECc---c------------HHHHHHHHHHhcCCCce
Confidence 998863 332 0 1456777777 467753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-09 Score=95.91 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+||++|||+|.++.++++.+ -+|+++|+++.|+..++..+.....
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~------------------------------- 121 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG------------------------------- 121 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-------------------------------
Confidence 4599999999999999998875 4699999999999988764321000
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEeccc--ccCcch--HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFF--IDCANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ff--idta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
. ....++.+..+|..++.. .+++||+|+...+ .....+ -.++++.+.++|+|||+++.
T Consensus 122 ---~-~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 122 ---S-YDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred ---c-ccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 0 011367778888766532 2579999886543 333344 35899999999999999984
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=104.02 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|+|+.|+..|+.-....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--------------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--------------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 468999999999999999875 578999999999999987632110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccc--------------------c----CcchHHHHHHHHHHhc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFI--------------------D----CANNIVSFIETIFNIL 251 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffi--------------------d----ta~n~~~yl~~I~~~L 251 (298)
.+ ..++.++.+|+.+.. ..++||+|+++ |+- + ...-+...++.+.++|
T Consensus 186 ---~l--~~~v~~~~~D~~~~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L 259 (506)
T PRK01544 186 ---EV--TDRIQIIHSNWFENI-EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFL 259 (506)
T ss_pred ---CC--ccceeeeecchhhhC-cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhc
Confidence 00 135778888876543 34689999874 211 0 0011234677788899
Q ss_pred cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 252 KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 252 kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
||||.++.- .++. ..+++.+++.+.||..+
T Consensus 260 ~~gG~l~lE----ig~~----------q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 260 KPNGKIILE----IGFK----------QEEAVTQIFLDHGYNIE 289 (506)
T ss_pred cCCCEEEEE----ECCc----------hHHHHHHHHHhcCCCce
Confidence 999988631 1111 26788999999999754
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-09 Score=103.82 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=90.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++.++++.+ -+|+++|+++.|+..++.- ++ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~-------------~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS-------------PA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC-------------Cc------------------chh
Confidence 35699999999999999999885 4799999999999988751 00 011
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcch-----HHHHHHHHHHhccCCeEEEE-eccccccccC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANN-----IVSFIETIFNILKPGGIWIN-LGPLLYHYSN 269 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n-----~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~ 269 (298)
+....+ ...+++++.+|..++.. .+++||+|++.+.-...+. -.++++.+.++|||||+++. .++- ++..
T Consensus 346 ~~~~~~-~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-~~~~- 422 (521)
T PRK03612 346 LNGGAL-DDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-YFAP- 422 (521)
T ss_pred hhcccc-CCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-ccch-
Confidence 110001 12478899999887543 3579999988754322111 13689999999999999873 3321 1111
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCE
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~ 293 (298)
-...++.+.+++.||.
T Consensus 423 --------~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 423 --------KAFWSIEATLEAAGLA 438 (521)
T ss_pred --------HHHHHHHHHHHHcCCE
Confidence 1135788888889993
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=90.98 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~ 177 (298)
+.+...+.+.+.. +++.+|||+|||+|..+.-||.. | ..|+++|..+.+...|+..+....
T Consensus 58 P~~~a~~l~~L~l----~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~------------ 121 (209)
T PF01135_consen 58 PSMVARMLEALDL----KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG------------ 121 (209)
T ss_dssp HHHHHHHHHHTTC-----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc------------
Confidence 3455566666543 35789999999999999999987 4 369999999999999988665321
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 178 QTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 178 ~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
..++.++.||...-..+.+.||.|+........+ ..+.+.||+||++
T Consensus 122 ---------------------------~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrL 168 (209)
T PF01135_consen 122 ---------------------------IDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRL 168 (209)
T ss_dssp ---------------------------THSEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEE
T ss_pred ---------------------------cCceeEEEcchhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEE
Confidence 1378899999877766778999988877665443 3355679999999
Q ss_pred EE
Q psy3185 258 IN 259 (298)
Q Consensus 258 In 259 (298)
|.
T Consensus 169 V~ 170 (209)
T PF01135_consen 169 VA 170 (209)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=95.87 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||+|..+.++.+.+ -.|+++|+++.|+..|+.. |+.. .
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~-------------~~L~------------------~ 198 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV-------------PELV------------------S 198 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc-------------cccc------------------h
Confidence 35699999999999999999875 5799999999999998741 1100 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC----cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC----ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt----a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
+.... ....++.++.+|..++.. ..++||+|+.-.. |. +..+ .++++.+++.|||||+++.
T Consensus 199 ~~~~~-~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 199 LNKSA-FFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred hcccc-CCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 00000 012588999999988643 3578999987642 22 2222 4689999999999999875
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=92.05 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=80.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+..+ ..+||++|||+|.-+..+|+. +..|+++|.++.++..|+..+.+..
T Consensus 59 ~L~~l~~~~~-------~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-------------- 117 (234)
T PLN02781 59 FLSMLVKIMN-------AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-------------- 117 (234)
T ss_pred HHHHHHHHhC-------CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--------------
Confidence 5555655543 569999999999988888764 3589999999999998887443210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEecccccCc-chHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCA-NNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta-~n~~~yl~~I~~~Lk 252 (298)
+ ..++.+..||+.+... +.++||+| |+|.. ++...|++.+.++||
T Consensus 118 ----------------------l--~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 118 ----------------------V--DHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVK 169 (234)
T ss_pred ----------------------C--CCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcC
Confidence 1 1367889999877532 14689998 45643 456789999999999
Q ss_pred CCeEEEE
Q psy3185 253 PGGIWIN 259 (298)
Q Consensus 253 pGG~~In 259 (298)
|||++|.
T Consensus 170 ~GG~ii~ 176 (234)
T PLN02781 170 VGGIIAF 176 (234)
T ss_pred CCeEEEE
Confidence 9999874
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-09 Score=94.62 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=75.1
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+||++|||+|.++..+++. +..|+++|+++.|+..++..+. .|
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~-- 113 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LP-- 113 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CC--
Confidence 568999999999999999876 4579999999999998876211 00
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC--c--chHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC--A--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt--a--~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.++.||+.++.. .+++||+|+.-.|-.. . -.-.++++.+.++|+|||+++
T Consensus 114 -----~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 114 -----ENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred -----CCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 012478899999877643 2468999876433211 1 112589999999999999996
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=92.33 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=89.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
...++||+|+|-|..+..+|...-+|++.|.|..|...-+. + .+++.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~---k-----g~~vl~------------------------ 141 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK---K-----GFTVLD------------------------ 141 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh---C-----CCeEEe------------------------
Confidence 45689999999999999999988889999999999654332 1 122111
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe--cccc-cc-ccC-CCCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL--GPLL-YH-YSN-MLNE 273 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~--gPl~-y~-~~~-~~~~ 273 (298)
..++...+.+||+|.+.-.||.+.++...|+.|++.|+|+|++|-. =|.. |- +.. ...+
T Consensus 142 ----------------~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~ 205 (265)
T PF05219_consen 142 ----------------IDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNR 205 (265)
T ss_pred ----------------hhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCC
Confidence 1111123468999999999999999999999999999999999742 2321 10 111 0011
Q ss_pred Cc--cC---CC----HHHHHHHHHhCCCEEEE
Q psy3185 274 DS--IE---PS----YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 274 ~~--~~---ls----~eEl~~~~~~~GF~i~~ 296 (298)
|. +. -| .+.+..+++.+||+++.
T Consensus 206 P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 206 PSELLPVKGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred chhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 11 11 23 34455788899999975
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=96.72 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|..+..+++++ ..|+|+|.|+.|+..++..+.+.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------------------------------- 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-------------------------------- 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 56799999999999999999875 48999999999999887633210
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEe---ccc---c---------cCcch-------HHHHHHHHHHhcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVAT---CFF---I---------DCANN-------IVSFIETIFNILK 252 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t---~ff---i---------dta~n-------~~~yl~~I~~~Lk 252 (298)
+.++.+..+|..+... ..++||.|++ |+- + .+..+ ....+++..++||
T Consensus 292 --------g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk 363 (427)
T PRK10901 292 --------GLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK 363 (427)
T ss_pred --------CCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0124567777765431 3468998873 221 1 11122 2368999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhC-CCEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGL-GFVYE 295 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~-GF~i~ 295 (298)
|||+++-. +.. ...+=+.+.+...+++. +|+++
T Consensus 364 pGG~lvys------tcs----~~~~Ene~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 364 PGGTLLYA------TCS----ILPEENEQQIKAFLARHPDAELL 397 (427)
T ss_pred CCCEEEEE------eCC----CChhhCHHHHHHHHHhCCCCEEe
Confidence 99998722 210 11122356666666653 57654
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=95.56 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||-|.........+. .++|+|+|..-+..|+...+.......-+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~----------------------- 118 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR----------------------- 118 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE-----------------------
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc-----------------------
Confidence 578999999999988777777765 59999999999999888663322110000000
Q ss_pred CCCCCCCCCCeeEEeccccc-----cccC-CCceeEEEeccccc----CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQ-----VYVH-PNKWDCVATCFFID----CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~-----~~~~-~~~fD~V~t~ffid----ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
......+..+|... .+.+ ..+||+|.+-|.|| +.+.....|+.|.+.|||||++|-..|
T Consensus 119 ------~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 119 ------FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp ------ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 00123345555432 1222 36999998888777 556677899999999999999985433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-08 Score=89.29 Aligned_cols=140 Identities=22% Similarity=0.334 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHH
Q psy3185 75 EKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml 154 (298)
+--..-+++=+.-|-...-. .|++.|... | .+.-|-|+|||-+++|. ..-..|...|+-
T Consensus 150 dlYH~gfr~QV~kWP~nPld-------~ii~~ik~r-~------~~~vIaD~GCGEakiA~---~~~~kV~SfDL~---- 208 (325)
T KOG3045|consen 150 DLYHAGFRSQVKKWPENPLD-------VIIRKIKRR-P------KNIVIADFGCGEAKIAS---SERHKVHSFDLV---- 208 (325)
T ss_pred HHHHHHHHHHHHhCCCChHH-------HHHHHHHhC-c------CceEEEecccchhhhhh---ccccceeeeeee----
Confidence 33444455556667655422 277777653 2 46789999999999887 222334444332
Q ss_pred HHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccc
Q psy3185 155 FASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFI 234 (298)
Q Consensus 155 ~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffi 234 (298)
+ .+-.++.+|...++.++++.|++|.|..|
T Consensus 209 --------------------------------------------a------~~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 209 --------------------------------------------A------VNERVIACDMRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred --------------------------------------------c------CCCceeeccccCCcCccCcccEEEeeHhh
Confidence 1 13346788999999899999999888765
Q ss_pred cCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 235 DCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 235 dta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
- ..|+.+++++++|+|||||.|-.. -+ .|-.-+.-.+.+.+..+||++.+.
T Consensus 239 M-gtn~~df~kEa~RiLk~gG~l~IA-Ev----------~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 239 M-GTNLADFIKEANRILKPGGLLYIA-EV----------KSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred h-cccHHHHHHHHHHHhccCceEEEE-eh----------hhhcccHHHHHHHHHHcCCeeeeh
Confidence 3 458999999999999999988532 11 233334667899999999998763
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=97.26 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+++. +..|+|+|.|+.|+..++..+.+.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------------------------------- 298 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------------------------------- 298 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 4679999999999999888864 458999999999999887644321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEe---c--c-ccc---------Ccch-------HHHHHHHHHHhccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---C--F-FID---------CANN-------IVSFIETIFNILKP 253 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~--f-fid---------ta~n-------~~~yl~~I~~~Lkp 253 (298)
.+ .++.++.+|+..+. .+++||+|+. | . ++. +.++ ....|.++.++|||
T Consensus 299 -----g~---~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 369 (445)
T PRK14904 299 -----GI---TIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP 369 (445)
T ss_pred -----CC---CeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 25677888887764 4578998873 1 1 111 1111 23589999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+++
T Consensus 370 gG~lv 374 (445)
T PRK14904 370 GGVLV 374 (445)
T ss_pred CcEEE
Confidence 99987
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.2e-08 Score=94.77 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+|+.+..|+|+|.|+.|+..|+.-+.. .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~---~------------------------------- 342 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR---N------------------------------- 342 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH---c-------------------------------
Confidence 457999999999999999999998999999999999998763211 0
Q ss_pred CCCCCCCCCeeEEeccccccc----cCCCceeEEEecccccCc-chHHHHHHHHHHhccCCeE-EEEecc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATCFFIDCA-NNIVSFIETIFNILKPGGI-WINLGP 262 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~ffidta-~n~~~yl~~I~~~LkpGG~-~In~gP 262 (298)
. ..++.+..+|+.+.. ..+++||+|++ |.. ..+.+.++.+.+ ++|+++ +|.+.|
T Consensus 343 --~---~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 343 --G---LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred --C---CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 0 025788899986543 12467999875 321 124456677766 577765 455566
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=93.34 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||.|.++.++++.. -.|+.+|+++.|+..++.-+..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~--------------------------------- 137 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD--------------------------------- 137 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh---------------------------------
Confidence 36799999999999999999884 4699999999999998863221
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEeccccc--Ccch--HHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFID--CANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffid--ta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
... . ....++.++.+|..++.. ++++||+|+.-.+-. .+.. -.++++.++++|+|||+++.
T Consensus 138 ~~~-~-~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 138 LAV-G-FDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hcc-c-cCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 000 0 112589999999876643 246899988643211 1111 24689999999999999974
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-08 Score=94.92 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=83.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++...+..|. +|+++|.|+.|+..++.-+.. +
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------------- 266 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------------- 266 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 357899999999999998777776 799999999999988762211 0
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEec--ccccCc-------chHHHHHHHHHHhccCCeEEEEecccc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFIDCA-------NNIVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffidta-------~n~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
.+. ..+++++.||..++.. ..++||+|+.- +|.... .+..++++...++|||||+++-+.
T Consensus 267 ---gl~-~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 267 ---KLD-LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred ---CCC-CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 000 0267889999877642 24689999864 444332 234556677889999999988421
Q ss_pred ccccCCCCCCccCCCHHHHHHHHH
Q psy3185 265 YHYSNMLNEDSIEPSYEVVKQVIQ 288 (298)
Q Consensus 265 y~~~~~~~~~~~~ls~eEl~~~~~ 288 (298)
-+..++.+++.+++.
T Consensus 340 ---------cs~~~~~~~f~~~v~ 354 (396)
T PRK15128 340 ---------CSGLMTSDLFQKIIA 354 (396)
T ss_pred ---------CCCcCCHHHHHHHHH
Confidence 133445666666654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=82.01 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+++.+++|+|||||.++.|+|..| .+|+|+|-++.++...+. .+..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~---N~~~----------------------------- 80 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER---NAAR----------------------------- 80 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH---HHHH-----------------------------
Confidence 467899999999999999999665 579999999999988766 2211
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE-EeccccccccCCCCCC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI-NLGPLLYHYSNMLNED 274 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I-n~gPl~y~~~~~~~~~ 274 (298)
+. -.|+.++.||.-+...+..++|+|+- ---.++...|+++...|||||.+| |.--+
T Consensus 81 ------fg-~~n~~vv~g~Ap~~L~~~~~~daiFI----GGg~~i~~ile~~~~~l~~ggrlV~naitl----------- 138 (187)
T COG2242 81 ------FG-VDNLEVVEGDAPEALPDLPSPDAIFI----GGGGNIEEILEAAWERLKPGGRLVANAITL----------- 138 (187)
T ss_pred ------hC-CCcEEEEeccchHhhcCCCCCCEEEE----CCCCCHHHHHHHHHHHcCcCCeEEEEeecH-----------
Confidence 01 14899999998777554448998864 434788899999999999999987 32111
Q ss_pred ccCCCHHHHHHHHHhCCC-EEEE
Q psy3185 275 SIEPSYEVVKQVIQGLGF-VYEV 296 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF-~i~~ 296 (298)
=+.-.+.+.+++.|| +++.
T Consensus 139 ---E~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 139 ---ETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ---HHHHHHHHHHHHcCCceEEE
Confidence 024456677778888 5543
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-08 Score=94.32 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=73.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|+. + ..|+|+|.|..|+..++..+.+.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------------------------------- 300 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------------------------------- 300 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999986 2 47999999999999887643321
Q ss_pred CCCCCCCCCCCCeeEEeccccccc----cCCCceeEEEe---ccc---ccCcc---------h-------HHHHHHHHHH
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVAT---CFF---IDCAN---------N-------IVSFIETIFN 249 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t---~ff---idta~---------n-------~~~yl~~I~~ 249 (298)
. -.++.++.+|+.++. ...++||.|+. |.- +..-+ + ..+.++++.+
T Consensus 301 -------g-~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 301 -------G-LKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred -------C-CCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 025777888887764 23478998874 221 11111 1 3578999999
Q ss_pred hccCCeEEE
Q psy3185 250 ILKPGGIWI 258 (298)
Q Consensus 250 ~LkpGG~~I 258 (298)
+|||||+++
T Consensus 373 ~lkpgG~lv 381 (434)
T PRK14901 373 LLKPGGTLV 381 (434)
T ss_pred hcCCCCEEE
Confidence 999999987
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-08 Score=100.54 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=87.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|.. |+++|.|+.|+..++.-+.. +.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----ng----------------------------- 585 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----NG----------------------------- 585 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----hC-----------------------------
Confidence 569999999999999999999874 99999999999988763221 00
Q ss_pred CCCCCCCCCeeEEecccccccc-CCCceeEEEec--cccc---------CcchHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC--FFID---------CANNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~--ffid---------ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
+. ..++.++.+|..++.. ..++||+|++- +|.. ...+..+.+..+.++|+|||+++...-
T Consensus 586 ---~~-~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~---- 657 (702)
T PRK11783 586 ---LS-GRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN---- 657 (702)
T ss_pred ---CC-ccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC----
Confidence 00 0267889999876542 24689998873 3322 123456788888999999998863211
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+..++.+ .+++.+.||++..
T Consensus 658 --------~~~~~~~--~~~~~~~g~~~~~ 677 (702)
T PRK11783 658 --------KRGFKMD--EEGLAKLGLKAEE 677 (702)
T ss_pred --------CccCChh--HHHHHhCCCeEEE
Confidence 1111121 6677778888754
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-08 Score=85.59 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=104.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc------cccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN------ILTHHQTM 190 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~------~~~~~~~r 190 (298)
.+..+||+||-.|-++..||+. |. .|.|+|+.+..+..|+.-+.+-.....-+.--|++.+--+ ...++.--
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3568999999999999999998 54 4999999999999988733221100000001111111100 11112222
Q ss_pred ccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc---ccc---CcchHHHHHHHHHHhccCCeEEEEecccc
Q psy3185 191 AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FID---CANNIVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 191 ~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fid---ta~n~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
...+||-.. ....|..+...||.+. ....||+|++.- .|| .-+-+..++..|+++|.|||++| +.|=-
T Consensus 138 t~~~p~n~~---f~~~n~vle~~dfl~~--~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQp 211 (288)
T KOG2899|consen 138 TTDFPDNVW---FQKENYVLESDDFLDM--IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQP 211 (288)
T ss_pred cccCCcchh---cccccEEEecchhhhh--ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-EcCCc
Confidence 223333221 1235777778888754 578999987642 233 34569999999999999999998 56643
Q ss_pred ccccCC---------CCCCccCCCHHHHHHHHHhC--CCEEE
Q psy3185 265 YHYSNM---------LNEDSIEPSYEVVKQVIQGL--GFVYE 295 (298)
Q Consensus 265 y~~~~~---------~~~~~~~ls~eEl~~~~~~~--GF~i~ 295 (298)
|..... .+...+.+.++....++.+. ||+-.
T Consensus 212 WksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 212 WKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred hHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeee
Confidence 321100 12346778889888888764 66543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=82.50 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=82.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+... ..+||++|||+|.-+..+|+. +..|+.+|.++.+...|+..+.++.-
T Consensus 36 lL~~l~~~~~-------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~------------- 95 (205)
T PF01596_consen 36 LLQMLVRLTR-------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL------------- 95 (205)
T ss_dssp HHHHHHHHHT--------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-------------
T ss_pred HHHHHHHhcC-------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-------------
Confidence 5666665543 469999999999999999975 57899999999999999886654210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEecccccCc-chHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCA-NNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta-~n~~~yl~~I~~~Lk 252 (298)
..++.+..||..++.. ..++||.|+ ||.. .+-..|++.+.++|+
T Consensus 96 -------------------------~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF----iDa~K~~y~~y~~~~~~ll~ 146 (205)
T PF01596_consen 96 -------------------------DDRIEVIEGDALEVLPELANDGEEGQFDFVF----IDADKRNYLEYFEKALPLLR 146 (205)
T ss_dssp -------------------------GGGEEEEES-HHHHHHHHHHTTTTTSEEEEE----EESTGGGHHHHHHHHHHHEE
T ss_pred -------------------------CCcEEEEEeccHhhHHHHHhccCCCceeEEE----EcccccchhhHHHHHhhhcc
Confidence 1378899999987643 136899884 6644 457889999999999
Q ss_pred CCeEEEE
Q psy3185 253 PGGIWIN 259 (298)
Q Consensus 253 pGG~~In 259 (298)
|||++|.
T Consensus 147 ~ggvii~ 153 (205)
T PF01596_consen 147 PGGVIIA 153 (205)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999983
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=90.34 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred eEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
.++|+|||+|.-+.-+|...-+|.|+|.|+.||..++. +... -|.|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k---~~~~-------~y~~------------------------ 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKK---HPPV-------TYCH------------------------ 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhc---CCCc-------cccc------------------------
Confidence 89999999998888888886679999999999998765 2110 1111
Q ss_pred CCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCe
Q psy3185 202 YNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG 255 (298)
...+|...+...+...+++.|.|++.=.+|+. |+..+.+.++|+|||.|
T Consensus 82 ----t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDG 130 (261)
T ss_pred ----CCccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCC
Confidence 12234444444554457999999887777766 57899999999999866
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=91.81 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=72.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|+. +..|+|+|.|..|+..++..+.+.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------------------------------- 298 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------------------------------- 298 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-------------------------------
Confidence 4578999999999999999986 357999999999999887643220
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEe---ccc---ccC---------cch-------HHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT---CFF---IDC---------ANN-------IVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t---~ff---idt---------a~n-------~~~yl~~I~~~Lk 252 (298)
.+ .++.++.+|+.++.. -.++||+|++ |.- +.+ ..+ ..+.|+.+.++||
T Consensus 299 -----g~---~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk 370 (444)
T PRK14902 299 -----GL---TNIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK 370 (444)
T ss_pred -----CC---CeEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 247788888877532 1278998875 221 111 111 2468999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||.++
T Consensus 371 pGG~lv 376 (444)
T PRK14902 371 KGGILV 376 (444)
T ss_pred CCCEEE
Confidence 999987
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-08 Score=93.61 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|.. +..|+|+|.|..|+..++..+.+.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------------------------------- 285 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------------------------------- 285 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999876 468999999999999887744321
Q ss_pred CCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEe---c--cc-ccCcc----------------hHHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVAT---C--FF-IDCAN----------------NIVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t---~--ff-idta~----------------n~~~yl~~I~~~Lk 252 (298)
.+ .++.+..+|...+. ..+++||.|+. | +- +..-+ ...+.|+.+.++||
T Consensus 286 -----g~---~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk 357 (431)
T PRK14903 286 -----KL---SSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE 357 (431)
T ss_pred -----CC---CeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 24667788877654 23578998864 2 21 21112 12456899999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||+++
T Consensus 358 pGG~Lv 363 (431)
T PRK14903 358 KGGILL 363 (431)
T ss_pred CCCEEE
Confidence 999986
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=81.57 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.++.+||++|||+|..+--||+.+-.|+++|........|+..|..
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~---------------------------------- 116 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET---------------------------------- 116 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH----------------------------------
Confidence 3578999999999999999999988999999999998888774432
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+. ..|+.+.+||-..-+.+...||.|+..-..++.+ +.+.+-|||||++|.
T Consensus 117 ----lg-~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 117 ----LG-YENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVI 167 (209)
T ss_pred ----cC-CCceEEEECCcccCCCCCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEE
Confidence 11 1368999999988887789999775444344443 234457999999974
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=92.75 Aligned_cols=116 Identities=23% Similarity=0.255 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC------CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
|...|.+.........++..|||+|||+|-|+...++.| .+|+|+|-|+.+....+.+.+..
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n------------ 237 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN------------ 237 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT------------
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc------------
Confidence 445555554422111135689999999999998877765 57999999998777665543320
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccC
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKP 253 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~Lkp 253 (298)
.+ ...+.++.||.+++.. +.+.|+|||- .|.+.- -..+.|....|.|||
T Consensus 238 ------------------------~w--~~~V~vi~~d~r~v~l-pekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 238 ------------------------GW--GDKVTVIHGDMREVEL-PEKVDIIVSELLGSFGDNE-LSPECLDAADRFLKP 289 (448)
T ss_dssp ------------------------TT--TTTEEEEES-TTTSCH-SS-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEE
T ss_pred ------------------------CC--CCeEEEEeCcccCCCC-CCceeEEEEeccCCccccc-cCHHHHHHHHhhcCC
Confidence 01 1478999999999864 5699999985 466654 567889999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+.|
T Consensus 290 ~Gi~I 294 (448)
T PF05185_consen 290 DGIMI 294 (448)
T ss_dssp EEEEE
T ss_pred CCEEe
Confidence 99998
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=87.39 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|.+ ...|+|+|.|..|+..++..+.+..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g------------------------------ 120 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG------------------------------ 120 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC------------------------------
Confidence 4679999999999999999875 2479999999999998876443210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEe---ccc---ccC---------c-------chHHHHHHHHHHhccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---CFF---IDC---------A-------NNIVSFIETIFNILKP 253 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~ff---idt---------a-------~n~~~yl~~I~~~Lkp 253 (298)
+ .++.+..+|...+....+.||+|+. |.- +.. . ....+.|+...++|||
T Consensus 121 ------~---~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 191 (264)
T TIGR00446 121 ------V---LNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP 191 (264)
T ss_pred ------C---CcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 2466677776655433456998864 221 111 1 1234689999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+++
T Consensus 192 gG~lv 196 (264)
T TIGR00446 192 GGVLV 196 (264)
T ss_pred CCEEE
Confidence 99887
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=84.78 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=103.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+|+.+.+.+.--. ..+.+.+|||-.-|+|..|.+-+++|. .|..+|-.+..|..|. +-||-+.
T Consensus 118 dP~~Dt~~Kv~~V--~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~-------------lNPwSr~- 181 (287)
T COG2521 118 DPLEDTLAKVELV--KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK-------------LNPWSRE- 181 (287)
T ss_pred CcHHHHHhhhhee--ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeec-------------cCCCCcc-
Confidence 3555665543210 123578999999999999999999998 8999999999887653 2254332
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEec---ccccCcchHHHHHHHHHHhccCC
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATC---FFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpG 254 (298)
+ ....+.++.||..++.. ++++||+|+-- |.+-+.---.++.++++|+||||
T Consensus 182 ----------------------l-~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 182 ----------------------L-FEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred ----------------------c-cccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 1 11357899999877653 67899998742 43433111246899999999999
Q ss_pred eEEEEeccccccccCCCCCCccCCC-HHHHHHHHHhCCCEEEE
Q psy3185 255 GIWINLGPLLYHYSNMLNEDSIEPS-YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 255 G~~In~gPl~y~~~~~~~~~~~~ls-~eEl~~~~~~~GF~i~~ 296 (298)
|.+. |+-..|+.....+. +..+.+-+++.||+.++
T Consensus 239 GrlF-------HYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 239 GRLF-------HYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CcEE-------EEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 9875 44433332333333 57889999999999664
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=87.55 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=79.4
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+++..||||=||||.+..|..-.|..|.|+|++..|+.-++.-+++ +.+++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~----------------------------y~i~~- 246 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY----------------------------YGIED- 246 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh----------------------------hCcCc-
Confidence 4577999999999999999999999999999999999987653221 11111
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccC------cch-HHHHHHHHHHhccCCeEEEEecc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDC------ANN-IVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidt------a~n-~~~yl~~I~~~LkpGG~~In~gP 262 (298)
-..+..+|.+.++..++++|+|+|= |-.-+ ... ..+.|++++++||+||+++...|
T Consensus 247 ---------~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 247 ---------YPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ---------eeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1123444888888777789999983 22221 122 45799999999999999887666
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-07 Score=84.84 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=79.4
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
..+||++|+|+|.-+..+|.. +..|+++|.++.++..|+..+.+..
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG------------------------------- 167 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG------------------------------- 167 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------------------------------
Confidence 569999999999999999974 4569999999999999887544310
Q ss_pred CCCCCCCCCCCeeEEeccccccccC------CCceeEEEecccccCc-chHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH------PNKWDCVATCFFIDCA-NNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~------~~~fD~V~t~ffidta-~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
+ ..++.+..||+.++... .++||.|+ ||.. .+...|++.+.++|+|||++| +.-.+|+
T Consensus 168 -----l--~~~I~li~GdA~e~L~~l~~~~~~~~FD~VF----IDa~K~~Y~~y~e~~l~lL~~GGvIV-~DNvL~~ 232 (278)
T PLN02476 168 -----V--SHKVNVKHGLAAESLKSMIQNGEGSSYDFAF----VDADKRMYQDYFELLLQLVRVGGVIV-MDNVLWH 232 (278)
T ss_pred -----C--CCcEEEEEcCHHHHHHHHHhcccCCCCCEEE----ECCCHHHHHHHHHHHHHhcCCCcEEE-EecCccC
Confidence 1 13788999998776421 36899764 6744 457889999999999999987 3344565
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-07 Score=90.22 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=74.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
++++.+.+.+.. .++.+|||+|||+|.++..+|+.+..|+|+|.|+.|+..++.-+.. +
T Consensus 279 ~l~~~~~~~l~~----~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL----QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N------------- 337 (431)
T ss_pred HHHHHHHHHhcc----CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h-------------
Confidence 445555554432 2356999999999999999999988999999999999988762211 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEecccccccc----CCCceeEEEecccccCcc-h-HHHHHHHHHHhccCCe
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATCFFIDCAN-N-IVSFIETIFNILKPGG 255 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~ffidta~-n-~~~yl~~I~~~LkpGG 255 (298)
. -.++.+..||+.+... ..++||+|+. |... . ..+.++.+.+ ++|++
T Consensus 338 -------------------~---~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~----dPPr~G~~~~~l~~l~~-l~~~~ 390 (431)
T TIGR00479 338 -------------------G---IANVEFLAGTLETVLPKQPWAGQIPDVLLL----DPPRKGCAAEVLRTIIE-LKPER 390 (431)
T ss_pred -------------------C---CCceEEEeCCHHHHHHHHHhcCCCCCEEEE----CcCCCCCCHHHHHHHHh-cCCCE
Confidence 0 1367889999876421 2457998873 4322 1 2456666655 78988
Q ss_pred EEE
Q psy3185 256 IWI 258 (298)
Q Consensus 256 ~~I 258 (298)
+..
T Consensus 391 ivy 393 (431)
T TIGR00479 391 IVY 393 (431)
T ss_pred EEE
Confidence 653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-07 Score=98.39 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=86.5
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|+++ ..|+|+|+|+.|+..|+.-... +... ++ .. ..-+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n~l~--~~------------~~---~~~~~ 177 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----NALD--DD------------GL---PVYDG 177 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----cCcc--cc------------cc---ccccc
Confidence 4589999999999999999874 5799999999999988762111 0000 00 00 00000
Q ss_pred CCCCCCCCCCeeEEeccccccccCC-CceeEEEec--ccccC------------c--------------------ch---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATC--FFIDC------------A--------------------NN--- 239 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~--ffidt------------a--------------------~n--- 239 (298)
... ....++.++.+|+.+..... .+||+||++ |.... . ++
T Consensus 178 ~~~--~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~ 255 (1082)
T PLN02672 178 EGK--TLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLG 255 (1082)
T ss_pred ccc--cccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHH
Confidence 000 00136889999987765322 379999986 32111 0 11
Q ss_pred -HHHHHHHHHHhccCCeEEE-EeccccccccCCCCCCccCCCHHHHH-HHHHhCCCEEEE
Q psy3185 240 -IVSFIETIFNILKPGGIWI-NLGPLLYHYSNMLNEDSIEPSYEVVK-QVIQGLGFVYEV 296 (298)
Q Consensus 240 -~~~yl~~I~~~LkpGG~~I-n~gPl~y~~~~~~~~~~~~ls~eEl~-~~~~~~GF~i~~ 296 (298)
+...++...++|||||.++ .+|. .. .+.+. +++++.||+...
T Consensus 256 ~yr~i~~~a~~~L~pgG~l~lEiG~---~q------------~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 256 LIARAVEEGISVIKPMGIMIFNMGG---RP------------GQAVCERLFERRGFRITK 300 (1082)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECc---cH------------HHHHHHHHHHHCCCCeeE
Confidence 1345566667999999875 3442 11 45777 689899998764
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.7e-08 Score=88.21 Aligned_cols=179 Identities=19% Similarity=0.195 Sum_probs=100.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~ 177 (298)
.....+..+.+.+.+. ..++.++||+|||.--.-.--|..-+ +++..|+++.-....+.=+++. ..+.-.|++.
T Consensus 38 ~~~~~L~~l~~~f~~g--~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~---~a~DWs~~~~ 112 (256)
T PF01234_consen 38 ILLFFLKNLHETFSSG--GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE---GAFDWSPFWK 112 (256)
T ss_dssp HHHHHHHHHHHHHHTS--SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT----TS--THHHHH
T ss_pred hHHHHHHHHHHHhCcc--CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC---CCCCccHHHH
Confidence 4455666676666532 23467899999999555433344445 5999999999877665544432 3333344444
Q ss_pred ccccc-------ccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEecccccCc-chHH--
Q psy3185 178 QTDNN-------ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCA-NNIV-- 241 (298)
Q Consensus 178 ~~s~~-------~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta-~n~~-- 241 (298)
.-++. ...+.++|.. | -.++.+|.+.-.+ -+.+||+|+|+|.++.+ +++.
T Consensus 113 ~v~~lEg~~~~~~e~e~~lR~~-V-------------k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y 178 (256)
T PF01234_consen 113 YVCELEGKREKWEEKEEKLRRA-V-------------KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY 178 (256)
T ss_dssp HHHHHTTSSSGHHHHHHHHHHH-E-------------EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH
T ss_pred HHHhccCCcchhhhHHHHHHHh-h-------------ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH
Confidence 32221 1112233310 0 0133444433221 12469999999998843 3444
Q ss_pred -HHHHHHHHhccCCeEEEEecccc---ccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 242 -SFIETIFNILKPGGIWINLGPLL---YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 242 -~yl~~I~~~LkpGG~~In~gPl~---y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..++.|.++|||||++|-.|-+- |..... .-+.+.++.+.+++.++++||+|+..
T Consensus 179 ~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~-~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 179 RRALRNISSLLKPGGHLILAGVLGSTYYMVGGH-KFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE-EEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE-ecccccCCHHHHHHHHHHcCCEEEec
Confidence 45677778999999999665442 221110 12467799999999999999999763
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=87.34 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.+.. .++.+|||+|||+|.++..|++++.+|+|+|.|+.|+..++.
T Consensus 30 i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 30 ILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAE 82 (272)
T ss_pred HHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHH
Confidence 45555554432 246799999999999999999999899999999999988765
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=75.60 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=71.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcH-HHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGR-LAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.|.++|.+.++.. ++.+|||+|||+|. +|..|++.|++|+|+|.|+..+..++..
T Consensus 3 ~i~~~l~~~~~~~----~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------------------- 58 (134)
T PRK04148 3 TIAEFIAENYEKG----KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------------------- 58 (134)
T ss_pred HHHHHHHHhcccc----cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------------------
Confidence 4677788877632 45799999999996 9999999999999999999977655431
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccC
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKP 253 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~Lkp 253 (298)
.+..+.+|..+-..+ -+.+|+|.++ ...+++...+-++.+-+.-
T Consensus 59 --------------------------~~~~v~dDlf~p~~~~y~~a~liysi---rpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 59 --------------------------GLNAFVDDLFNPNLEIYKNAKLIYSI---RPPRDLQPFILELAKKINV 103 (134)
T ss_pred --------------------------CCeEEECcCCCCCHHHHhcCCEEEEe---CCCHHHHHHHHHHHHHcCC
Confidence 223555565443221 2567777765 4677888888888876553
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-07 Score=82.67 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=80.0
Q ss_pred eEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+|||+|||+|-+|..+|+.+- .|+|+|+|+..+.+|+. | +.. +.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~--N-a~~-~~------------------------------ 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE--N-AER-NG------------------------------ 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH--H-HHH-cC------------------------------
Confidence 799999999999999999975 89999999999999876 2 111 00
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEec-ccccC------------------------cchHHHHHHHHHHhccCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDC------------------------ANNIVSFIETIFNILKPG 254 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidt------------------------a~n~~~yl~~I~~~LkpG 254 (298)
+ .++..+.+|+.+-. .++||+||++ =.|.. .+-+...+..+.+.|+||
T Consensus 159 --l---~~~~~~~~dlf~~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~ 231 (280)
T COG2890 159 --L---VRVLVVQSDLFEPL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPG 231 (280)
T ss_pred --C---ccEEEEeeeccccc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCC
Confidence 0 13444555543322 3477777765 12221 122445777788899999
Q ss_pred eEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCC-CEEE
Q psy3185 255 GIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLG-FVYE 295 (298)
Q Consensus 255 G~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~G-F~i~ 295 (298)
|.++.- .++. ..+++.+++.+.| |..+
T Consensus 232 g~l~le----~g~~----------q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 232 GVLILE----IGLT----------QGEAVKALFEDTGFFEIV 259 (280)
T ss_pred cEEEEE----ECCC----------cHHHHHHHHHhcCCceEE
Confidence 988731 1111 1688999999999 6543
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=86.51 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=57.4
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|+.|..|+|+|.|+.|+..++.-... .
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~---~-------------------------------- 218 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAE---L-------------------------------- 218 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH---c--------------------------------
Confidence 46999999999999999999999999999999999988763211 0
Q ss_pred CCCCCCCCeeEEecccccccc-CCCceeEEEec
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC 231 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ 231 (298)
.+ .++.+..+|+.++.. ..++||+|+..
T Consensus 219 -~l---~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 219 -GL---TNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred -CC---CceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 01 267889999877643 23579988853
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-07 Score=89.60 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|..+..+++. + ..|+|+|.|..|+..++..+.+.. .
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g----~-------------------------- 287 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG----L-------------------------- 287 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC----C--------------------------
Confidence 4679999999999999999986 3 689999999999998877443210 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEe-----cc-cccCcch----------------HHHHHHHHHHhcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVAT-----CF-FIDCANN----------------IVSFIETIFNILK 252 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t-----~f-fidta~n----------------~~~yl~~I~~~Lk 252 (298)
. ..+.+..+|...... ..++||.|+. .+ .+...++ ..+.|+.+.++||
T Consensus 288 ------~--~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk 359 (426)
T TIGR00563 288 ------T--IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK 359 (426)
T ss_pred ------C--eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 122234445433321 3568998863 22 2322222 3578999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||+++
T Consensus 360 pgG~lv 365 (426)
T TIGR00563 360 TGGTLV 365 (426)
T ss_pred CCcEEE
Confidence 999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=80.95 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc---------C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccc--ccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---------G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYP--WVQQTDNNILT 185 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---------G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p--~~~~~s~~~~~ 185 (298)
...+|+..||++|--++-||.. + +.+.|.|+|..+|..|+. ..-......-.| +...|-. ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~---G~Y~~~~~~~~~~~~~~ryf~-~~~ 106 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA---GIYPERSLRGLPPAYLRRYFT-ERD 106 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH---TEEEGGGGTTS-HHHHHHHEE-EE-
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh---CCCCHHHHhhhHHHHHHHhcc-ccC
Confidence 5689999999999988877642 2 579999999999999875 110000000000 0000000 000
Q ss_pred ccccccccc-CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc-cc-CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 186 HHQTMAVTF-PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF-ID-CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 186 ~~~~r~~~i-pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff-id-ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+ .+.| |++ ...+.|...|..+.++..+.||+|++--+ |- +.+.....++.+++.|+|||+++ +|+
T Consensus 107 ~~---~~~v~~~l-------r~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~-lG~ 175 (196)
T PF01739_consen 107 GG---GYRVKPEL-------RKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF-LGH 175 (196)
T ss_dssp CC---CTTE-HHH-------HTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE-E-T
T ss_pred CC---ceeEChHH-------cCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE-Eec
Confidence 00 0111 111 24788999999884446799999987533 22 44456789999999999999998 454
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=86.75 Aligned_cols=124 Identities=17% Similarity=0.292 Sum_probs=84.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++|-..|...+- .+...+|++|||-|......-+.|. .+.|+|++..-+..|+...+..... .. -|+
T Consensus 104 NwIKs~LI~~y~-----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r--~~--~~~--- 171 (389)
T KOG1975|consen 104 NWIKSVLINLYT-----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR--FK--KFI--- 171 (389)
T ss_pred HHHHHHHHHHHh-----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh--hh--ccc---
Confidence 344455555553 2466899999999998888888886 4999999999999888765422110 00 000
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccc-----c-cCCCceeEEEeccccc----CcchHHHHHHHHHH
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV-----Y-VHPNKWDCVATCFFID----CANNIVSFIETIFN 249 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~-----~-~~~~~fD~V~t~ffid----ta~n~~~yl~~I~~ 249 (298)
....+.+||-... + +.+.+||+|.|-|.+| |-+...-.+..+.+
T Consensus 172 --------------------------f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~ 225 (389)
T KOG1975|consen 172 --------------------------FTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAK 225 (389)
T ss_pred --------------------------ceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHh
Confidence 1234556653321 1 2334599999888777 44556779999999
Q ss_pred hccCCeEEEEecc
Q psy3185 250 ILKPGGIWINLGP 262 (298)
Q Consensus 250 ~LkpGG~~In~gP 262 (298)
+|||||+||-.-|
T Consensus 226 ~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 226 CLKPGGVFIGTIP 238 (389)
T ss_pred hcCCCcEEEEecC
Confidence 9999999995444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=83.37 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++.+|||+|||+|.++..+++++..|+|+|++..|+..++..+..
T Consensus 17 ~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~------------------- 73 (258)
T PRK14896 17 VVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA------------------- 73 (258)
T ss_pred HHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------------------
Confidence 56666665542 2467999999999999999999998999999999999887652110
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
..++.++.+|+.++.. ..||.|+++
T Consensus 74 ----------------------~~~v~ii~~D~~~~~~--~~~d~Vv~N 98 (258)
T PRK14896 74 ----------------------AGNVEIIEGDALKVDL--PEFNKVVSN 98 (258)
T ss_pred ----------------------CCCEEEEEeccccCCc--hhceEEEEc
Confidence 1368889999988643 357888876
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.9e-07 Score=78.81 Aligned_cols=98 Identities=15% Similarity=-0.011 Sum_probs=65.3
Q ss_pred CCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++.+++.+| .+|+++|.++.++..++.-+...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~---------------------------------- 99 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL---------------------------------- 99 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh----------------------------------
Confidence 4699999999999999866665 57999999999998776522210
Q ss_pred CCCCCCCCCeeEEecccccccc-CCCceeEEEec-ccccCcchHHHHHHHHHH--hccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC-FFIDCANNIVSFIETIFN--ILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~-ffidta~n~~~yl~~I~~--~LkpGG~~I 258 (298)
. ..++.+..+|+.+... ..++||+|++. =|-.. -..+.++.|.. +|+|+|+++
T Consensus 100 --~---~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g--~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 100 --K---AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKG--LLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred --C---CCcEEEEEchHHHHHhhcCCCceEEEECCCCCCC--hHHHHHHHHHHCCCcCCCcEEE
Confidence 0 0257788899876542 23579998864 11111 12234454444 478888776
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-07 Score=79.27 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=96.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.++++|..............++||+||=....+.. ..+ ++|+.||+.+.
T Consensus 34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------------------- 83 (219)
T PF11968_consen 34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------------------- 83 (219)
T ss_pred HHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------------------
Confidence 47777777654322233458999999976554443 233 56888887651
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCc---chHHHHHHHHHHhccCC
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCA---NNIVSFIETIFNILKPG 254 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta---~n~~~yl~~I~~~LkpG 254 (298)
.-.+.+.||.+.+. +.++||+|+.+.+|.-. ...-+.+..+++.|+|+
T Consensus 84 --------------------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 84 --------------------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred --------------------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 11256778888754 45899999998877644 44557999999999999
Q ss_pred eE-----EEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 255 GI-----WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 255 G~-----~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|. ++.+-|+-.+. .+--++.+-+..+++..||..++.
T Consensus 138 g~~~~~~LFlVlP~~Cv~------NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 138 GLSLFPSLFLVLPLPCVT------NSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CccCcceEEEEeCchHhh------cccccCHHHHHHHHHhCCcEEEEE
Confidence 99 76677776553 367788999999999999998764
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=79.25 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccc
Q psy3185 98 TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYP 174 (298)
Q Consensus 98 ~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p 174 (298)
..|++=...|.....- .++.+||+.|.|+|.|+..||.. | .+|+..|.-..++..|++-++..
T Consensus 77 iIyPKD~~~I~~~~gi----~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~---------- 142 (256)
T COG2519 77 IIYPKDAGYIVARLGI----SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF---------- 142 (256)
T ss_pred eecCCCHHHHHHHcCC----CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh----------
Confidence 3444444555555442 46889999999999999999974 4 47999999999999998733321
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCC
Q psy3185 175 WVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 175 ~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG 254 (298)
. +. .++.+..||..+...+ +.||+|+ +| .+++-++++.++++||||
T Consensus 143 ---------------------~-----l~--d~v~~~~~Dv~~~~~~-~~vDav~----LD-mp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 143 ---------------------G-----LG--DRVTLKLGDVREGIDE-EDVDAVF----LD-LPDPWNVLEHVSDALKPG 188 (256)
T ss_pred ---------------------c-----cc--cceEEEeccccccccc-cccCEEE----Ec-CCChHHHHHHHHHHhCCC
Confidence 0 11 2377778999887644 4899886 34 467899999999999999
Q ss_pred eEEEEeccc
Q psy3185 255 GIWINLGPL 263 (298)
Q Consensus 255 G~~In~gPl 263 (298)
|.++.+.|.
T Consensus 189 g~~~~y~P~ 197 (256)
T COG2519 189 GVVVVYSPT 197 (256)
T ss_pred cEEEEEcCC
Confidence 999988773
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-07 Score=83.88 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCeEEEecccCcHHHHHHHHc----------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc-cccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR----------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP-WVQQTDNNILTHHQ 188 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~----------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p-~~~~~s~~~~~~~~ 188 (298)
..+|+..||.||--++-||.. .+.|+|.|+|..+|..|+.-.=...... .+-| |...|=.... ...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r--~~p~~~~~ryF~~~~-~~~ 192 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK--TLSPQQLQRYFMRGT-GPH 192 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh--cCCHHHHHHHccccc-CCC
Confidence 589999999999988887753 2679999999999998876100000000 0000 1110000000 000
Q ss_pred cccccc-CCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEeccc-cc-CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 189 TMAVTF-PDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFF-ID-CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 189 ~r~~~i-pd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ff-id-ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
-..+.+ |.+ ...+.|...|..+.. +..+.||+|++-.. |. ..+.....++.+++.|+|||+++ +|+
T Consensus 193 ~~~~~v~~~l-------r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~-lG~ 262 (287)
T PRK10611 193 EGLVRVRQEL-------ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF-AGH 262 (287)
T ss_pred CceEEEChHH-------HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE-EeC
Confidence 000112 111 246788888887642 23589999988432 22 44567889999999999999876 554
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=79.28 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+..+ ..+||++|+++|.-+..+|.. +..|+.+|.++.+...|+..+.++.
T Consensus 70 lL~~l~~~~~-------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-------------- 128 (247)
T PLN02589 70 FLNMLLKLIN-------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-------------- 128 (247)
T ss_pred HHHHHHHHhC-------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--------------
Confidence 5555555443 469999999999999999864 4689999999999999887554311
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-------CCceeEEEecccccCc-chHHHHHHHHHHhc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-------PNKWDCVATCFFIDCA-NNIVSFIETIFNIL 251 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-------~~~fD~V~t~ffidta-~n~~~yl~~I~~~L 251 (298)
+ ..++.+..||+.+.... .++||.|+ ||.. .+-..|++.+.++|
T Consensus 129 ----------------------~--~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iF----iDadK~~Y~~y~~~~l~ll 180 (247)
T PLN02589 129 ----------------------V--AHKIDFREGPALPVLDQMIEDGKYHGTFDFIF----VDADKDNYINYHKRLIDLV 180 (247)
T ss_pred ----------------------C--CCceEEEeccHHHHHHHHHhccccCCcccEEE----ecCCHHHhHHHHHHHHHhc
Confidence 1 14788999998886432 36899874 6644 34568999999999
Q ss_pred cCCeEEEEecccccc
Q psy3185 252 KPGGIWINLGPLLYH 266 (298)
Q Consensus 252 kpGG~~In~gPl~y~ 266 (298)
+|||++| +.-.+|+
T Consensus 181 ~~GGviv-~DNvl~~ 194 (247)
T PLN02589 181 KVGGVIG-YDNTLWN 194 (247)
T ss_pred CCCeEEE-EcCCCCC
Confidence 9999987 3445665
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=80.07 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=73.7
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+.|.+.+|.. .+.+|||+|||.|-++..+|+..- .++-+|.|...++.|+.-+.. |.
T Consensus 148 ~lLl~~l~~~----~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~------------- 206 (300)
T COG2813 148 RLLLETLPPD----LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NG------------- 206 (300)
T ss_pred HHHHHhCCcc----CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cC-------------
Confidence 4566666643 345999999999999999999964 799999999999999873211 10
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc----CcchH-HHHHHHHHHhccCCeEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID----CANNI-VSFIETIFNILKPGGIW 257 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid----ta~n~-~~yl~~I~~~LkpGG~~ 257 (298)
+ .+..+...|..+- -.++||.|+|+==++ +..++ .+.|+.-.+.|++||-+
T Consensus 207 --------------------~--~~~~v~~s~~~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 207 --------------------V--ENTEVWASNLYEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred --------------------C--CccEEEEeccccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEE
Confidence 0 1113334432221 134999999983223 33332 36899999999999965
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=79.12 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~ 156 (298)
++..|||+|||||.++..++++|. .|+|+|.|+.|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 467899999999999999999986 59999999998875
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-06 Score=76.82 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=99.5
Q ss_pred hhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHh
Q psy3185 86 RDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 86 RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+|+..=...-+..|.+=+..|.....- +++.+||+-|.|+|-|+..||+. | ..|...|+....+..|+.=+.
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i----~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~ 86 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI----RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE 86 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT------TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH
Confidence 4566655445566777777777776653 46889999999999999999986 3 479999999999988876322
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC---CCceeEEEecccccCcch
Q psy3185 163 KCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH---PNKWDCVATCFFIDCANN 239 (298)
Q Consensus 163 ~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~---~~~fD~V~t~ffidta~n 239 (298)
. + .+ ..++.+..+|..+--++ ++.+|+|+ || .++
T Consensus 87 ~------~------------------------------gl--~~~v~~~~~Dv~~~g~~~~~~~~~Davf----LD-lp~ 123 (247)
T PF08704_consen 87 R------H------------------------------GL--DDNVTVHHRDVCEEGFDEELESDFDAVF----LD-LPD 123 (247)
T ss_dssp H------T------------------------------TC--CTTEEEEES-GGCG--STT-TTSEEEEE----EE-SSS
T ss_pred H------c------------------------------CC--CCCceeEecceecccccccccCcccEEE----Ee-CCC
Confidence 1 0 01 14788888888643221 36788875 45 466
Q ss_pred HHHHHHHHHHhc-cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 240 IVSFIETIFNIL-KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 240 ~~~yl~~I~~~L-kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+-++|..+.++| ||||.++.+.|-.-. .....+.+++.||..+.
T Consensus 124 Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ-------------v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 124 PWEAIPHAKRALKKPGGRICCFSPCIEQ-------------VQKTVEALREHGFTDIE 168 (247)
T ss_dssp GGGGHHHHHHHE-EEEEEEEEEESSHHH-------------HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCHHH-------------HHHHHHHHHHCCCeeeE
Confidence 789999999999 899999988774211 33445566678987653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-07 Score=87.17 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=82.2
Q ss_pred CCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
..+++|.|||.|....+++..+ ..++|++.+..-+..++...-+ . ++
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~---------~l---------------------- 158 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-A---------YL---------------------- 158 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-H---------Hh----------------------
Confidence 4589999999999999999875 6799999999987766542111 0 00
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ....++.+||..-++++++||+|-+.-...++++....+++|++++||||+||+
T Consensus 159 ----~--~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 159 ----D--NKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ----h--hhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 1 122347888888888999999998887778899999999999999999999996
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.4e-07 Score=83.40 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++..|||+|||||-|+..-|+.|.. |.|+|.|.-+ ..|+.+.+. |.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 3679999999999999999999975 9999999866 666655432 111
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
..-+.+..|...++..+.++.|+|++-+ |+-.-.-+..+|-.=-+.|+|||...
T Consensus 108 -------~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1246677777777654568999999853 33222223346666668999999875
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-07 Score=93.07 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=87.3
Q ss_pred HHHHHHhhCCCCCCCCCCC-eEEEecccCcHHHHHHHHcCCeEEEe---eCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 103 IISEILARFPPETINPKDV-NILVPGAGLGRLAFEIARRGYVCQGN---EFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~-~VLdpGcG~Grla~ela~~G~~v~g~---D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
-++.|.+.+|.... .... .+||+|||+|.++..|..++-.+..+ |-.+..+. +++.+.
T Consensus 101 Yid~i~~~~~~~~~-~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvq---faleRG-------------- 162 (506)
T PF03141_consen 101 YIDQIAEMIPLIKW-GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQ---FALERG-------------- 162 (506)
T ss_pred HHHHHHHHhhcccc-CCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhh---hhhhcC--------------
Confidence 45667776663111 2233 47999999999999999998764433 33333332 323221
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec-ccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
+|-+. -+.|. ..+++++++||.|-+. ..+.+..+---||-++.|+|+|||+|
T Consensus 163 ---------------vpa~~-----------~~~~s-~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 163 ---------------VPAMI-----------GVLGS-QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYF 215 (506)
T ss_pred ---------------cchhh-----------hhhcc-ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceE
Confidence 11110 01111 2345578999998665 34555555456999999999999999
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+-.||-.|...+ ....--++++..+.++.-|+.+.
T Consensus 216 v~S~ppv~~r~~----~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 216 VLSGPPVYQRTD----EDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred EecCCcccccch----HHHHHHHHHHHHHHHHHHHHHhe
Confidence 988887772110 11122356677777776666543
|
; GO: 0008168 methyltransferase activity |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=76.84 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
...+||+|||.|+...++|+. ...+.|+|.+...+..+.....+ .
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~---~------------------------------ 64 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK---R------------------------------ 64 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH---H------------------------------
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh---h------------------------------
Confidence 348999999999999999987 57799999999988766542221 0
Q ss_pred CCCCCCCCCCeeEEeccccccc---cCCCceeEEEeccc---cc--Ccch---HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFF---ID--CANN---IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ff---id--ta~n---~~~yl~~I~~~LkpGG~~In 259 (298)
. ..|+.++.+|+..+. .++++.|.|...|= -. +... -.++++.++++|||||.+--
T Consensus 65 ---~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 65 ---G---LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ---T---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred ---c---ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 0 148889999987743 35689998877651 11 1111 13799999999999998853
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=77.10 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|+|.|.++..++++ +-+++..|. +.++..++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------------------------------------- 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------------------------------------- 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------------------------------------
Confidence 3468999999999999999988 567899998 666554432
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCC--eEEEEeccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPG--GIWINLGPL 263 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpG--G~~In~gPl 263 (298)
..++.++.|||.+-. +. +|+|+...++| ..+.....|+++++.|+|| |.++.+.++
T Consensus 142 --------~~rv~~~~gd~f~~~--P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp --------TTTEEEEES-TTTCC--SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred --------ccccccccccHHhhh--cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 147899999998432 33 99999888886 3455778999999999999 999866554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=76.20 Aligned_cols=70 Identities=21% Similarity=0.141 Sum_probs=55.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+..|+|+|||||+|+.-.+-.| ..|+|+|..+.++.+++.-.++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~---------------------------------- 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE---------------------------------- 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------------------------------
Confidence 46689999999999999999999 5699999999999998872211
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
..+++.++.+|...+ .+.+|.|+++
T Consensus 91 ------l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 91 ------LLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred ------hCCceEEEEcchhhc---CCccceEEEC
Confidence 014788888887776 4678877765
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-06 Score=73.60 Aligned_cols=100 Identities=16% Similarity=0.009 Sum_probs=66.3
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||++||+|.++.+++.+|. .|+++|.+..++..++.-+....
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--------------------------------- 96 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--------------------------------- 96 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC---------------------------------
Confidence 56899999999999999999997 69999999999987765322110
Q ss_pred CCCCCCCCCeeEEecccccccc---CCC-ceeEEEec-ccccCcchHHHHHHHHH--HhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV---HPN-KWDCVATC-FFIDCANNIVSFIETIF--NILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~---~~~-~fD~V~t~-ffidta~n~~~yl~~I~--~~LkpGG~~In 259 (298)
+ ..++.+..+|...... ..+ .||+|+.- .|-. ......++.+. .+|++||++|.
T Consensus 97 ---~--~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 97 ---S--GEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred ---C--cccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 0 1256778888755421 122 47777653 2211 12233444443 47889998873
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=80.73 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=64.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++.+|||+|||+|.++..|++.+..|+|+|++..|+..++..+...
T Consensus 24 i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------ 81 (294)
T PTZ00338 24 VLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------ 81 (294)
T ss_pred HHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc------------------
Confidence 55555555432 24679999999999999999999989999999999999887633210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
....++.++.+|+.+... ..||+|+++
T Consensus 82 --------------------~~~~~v~ii~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 82 --------------------PLASKLEVIEGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred --------------------CCCCcEEEEECCHhhhcc--cccCEEEec
Confidence 001478899999988643 478988765
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.4e-06 Score=78.22 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=69.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|..|..|+|+|.|+.++..++.-... .
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~---~-------------------------------- 278 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM---L-------------------------------- 278 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH---c--------------------------------
Confidence 46899999999999999999998999999999999988762211 0
Q ss_pred CCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEE-Eecc
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWI-NLGP 262 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~I-n~gP 262 (298)
.+ .++.+..+|+.++... .++||+|+. |.... ....++.|.+ ++|+++.+ ...|
T Consensus 279 -~~---~~~~~~~~d~~~~~~~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p 336 (374)
T TIGR02085 279 -GL---DNLSFAALDSAKFATAQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNA 336 (374)
T ss_pred -CC---CcEEEEECCHHHHHHhcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCH
Confidence 01 2678899998765422 256998765 32211 2345566654 68887664 3444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=78.07 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+..+. .++.+|||+|||+|.++..|++++..|+|+|.++.|+..++.
T Consensus 17 i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 17 VIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRK 69 (253)
T ss_pred HHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHH
Confidence 56666665542 246799999999999999999999899999999999987765
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=74.99 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP 174 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p 174 (298)
.|..+++.|..++. ++.+.|++|+|+|.|+--+|+. |-.+.|||.=+..+..+..-+++-
T Consensus 68 mha~~le~L~~~L~------pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~---------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ------PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD---------- 131 (237)
T ss_pred HHHHHHHHHHHhhc------cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh----------
Confidence 35567888887664 4789999999999999999865 445699999999999887754431
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCC
Q psy3185 175 WVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 175 ~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG 254 (298)
+. =|+. . +.-...+++++.||-...+.+...||+|..-- ...+..+++-..||||
T Consensus 132 -i~----------------~~e~-~-~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 132 -IT----------------TSES-S-SKLKRGELSIVVGDGRKGYAEQAPYDAIHVGA------AASELPQELLDQLKPG 186 (237)
T ss_pred -cc----------------Cchh-h-hhhccCceEEEeCCccccCCccCCcceEEEcc------CccccHHHHHHhhccC
Confidence 10 0111 0 11123688999999999998899999987652 1223345555678887
Q ss_pred eEEE-Eecc
Q psy3185 255 GIWI-NLGP 262 (298)
Q Consensus 255 G~~I-n~gP 262 (298)
|.++ -.||
T Consensus 187 Grllip~~~ 195 (237)
T KOG1661|consen 187 GRLLIPVGQ 195 (237)
T ss_pred CeEEEeecc
Confidence 7665 4554
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=80.33 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=76.2
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+||++|+|.|.++.++.+.. -.|+.+|+++.++..++.-+. +.+.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~------------~~~~------------------- 152 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLT------------VNRE------------------- 152 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcc------------cccc-------------------
Confidence 5689999999999999998863 469999999999999876321 1000
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC-----cchH--HHHHH-HHHHhccCCeEEE-Eecc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC-----ANNI--VSFIE-TIFNILKPGGIWI-NLGP 262 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt-----a~n~--~~yl~-~I~~~LkpGG~~I-n~gP 262 (298)
.+ ...++.++.+|...+.. .+++||+|+.-.+ |. +..+ .++++ .+.+.|+|||+++ +.++
T Consensus 153 ---~~-~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 153 ---AF-CDKRLELIINDARAELEKRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ---cc-cCCceEEEEChhHHHHhhCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 00 12478999999887653 3478999886432 32 1112 36887 8999999999986 4443
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.5e-06 Score=63.44 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=63.7
Q ss_pred EEEecccCcHHH--HHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 123 ILVPGAGLGRLA--FEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 123 VLdpGcG~Grla--~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
+||+|||+|... ..+...+..++|+|.|..|+..++..... ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---------------------------------- 96 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---------------------------------- 96 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----------------------------------
Confidence 999999999965 33333345899999999999874331100 00
Q ss_pred CCCCCCCeeEEeccccc--cccCC-CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 201 DYNDDCDFSMAAGDFLQ--VYVHP-NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~--~~~~~-~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...+.+..+|... +.... ..||++.+...++... ....+..+.+.|+|+|.++..
T Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 97 ----LGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred ----CCceEEEEeccccCCCCCCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 0014455555554 33334 4899884333333333 778999999999999998754
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.7e-06 Score=73.04 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+..+||++|.++|.=+..+|.. . -.++.+|.+++|...|+..+.+..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag------------------------------ 108 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG------------------------------ 108 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC------------------------------
Confidence 3579999999999999999875 2 369999999999999988655421
Q ss_pred CCCCCCCCCCCCeeEEe-ccccccccC--CCceeEEEecccccCcc-hHHHHHHHHHHhccCCeEEE
Q psy3185 196 DINTSDYNDDCDFSMAA-GDFLQVYVH--PNKWDCVATCFFIDCAN-NIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~-gDf~~~~~~--~~~fD~V~t~ffidta~-n~~~yl~~I~~~LkpGG~~I 258 (298)
-...+.+.. ||..+.... .++||.| |||..+ +-.+|++.+.++|+|||+.|
T Consensus 109 --------~~~~i~~~~~gdal~~l~~~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 109 --------VDDRIELLLGGDALDVLSRLLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred --------CcceEEEEecCcHHHHHHhccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 012466666 688776543 5899987 578554 45789999999999999998
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=76.35 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|-|.|..+.++.+.. -+|+.+|+++.++..|+.-+......
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~----------------------------- 126 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG----------------------------- 126 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-----------------------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-----------------------------
Confidence 36799999999999999999885 47999999999999988743321100
Q ss_pred CCCCCCCCCCCeeEEeccccccccC-CC-ceeEEEeccccc--Ccch--HHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH-PN-KWDCVATCFFID--CANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~-~~-~fD~V~t~ffid--ta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
....++.++.+|...+... .+ +||+|+.-.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 127 ------~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 127 ------LDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ------GGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 0125899999998877543 34 899987532211 2222 25899999999999999973
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.3e-06 Score=70.67 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-----------EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-----------CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHH 187 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-----------v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~ 187 (298)
++..||||=||+|.+..|-|..+.. +.|.|++..|+..|+.-+.+..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---------------------- 85 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---------------------- 85 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----------------------
Confidence 4679999999999999999887644 5699999999998887433210
Q ss_pred cccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccc--cCcc---hH-HHHHHHHHHhccCCeEEEE
Q psy3185 188 QTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFI--DCAN---NI-VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 188 ~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffi--dta~---n~-~~yl~~I~~~LkpGG~~In 259 (298)
....+.+..+||.++...++++|+|+|. |-. .... ++ ..+++.+.++|+|..+++.
T Consensus 86 ----------------~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 86 ----------------VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp -----------------CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred ----------------cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 0135778999999998667899999996 332 2222 22 2467888899999666664
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=73.45 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+.+|||+|||+|-++--|+.+ |+.++|+|+++.++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4689999999999888888766 789999999999999998743
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=72.21 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+||++|-|-|..+.|+.+..-+|+-+|+...|+..++.-+. .++.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP------------~~~~-------------------- 119 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFP------------HFHE-------------------- 119 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCH------------HHHH--------------------
Confidence 46799999999999999999986699999999999999886322 1111
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.++. .+.+ ...++||+|+.=- .. -.++.+.++++|+|||+++.
T Consensus 120 --~~-~DpRv~l~~-~~~~--~~~~~fDVIIvDs----~~-~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 120 --VK-NNKNFTHAK-QLLD--LDIKKYDLIICLQ----EP-DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred --hh-cCCCEEEee-hhhh--ccCCcCCEEEEcC----CC-ChHHHHHHHHhcCCCcEEEE
Confidence 00 123565554 1211 1247899987531 11 15788999999999999996
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-05 Score=69.64 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=100.8
Q ss_pred CChHHHhhhhHHHHHH-HHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C---CeEEEeeCCHHHHHHHHHHHhhhh
Q psy3185 91 EGSEERKTCYEPIISE-ILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G---YVCQGNEFSLFMLFASNFILNKCR 165 (298)
Q Consensus 91 ~g~~ER~~~~~~i~~~-l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G---~~v~g~D~S~~Ml~~a~~~l~~~~ 165 (298)
.|-.+|+.-....+.. +..+.. ...+.+|||+.||.||..++.... . -+|.-+|+|+.-+...+.+....
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~L~~----~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~- 184 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIARLRE----QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER- 184 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-
Confidence 3556776544444332 332222 135789999999999999997765 2 35999999999999888764320
Q ss_pred hccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCc---ch
Q psy3185 166 EKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCA---NN 239 (298)
Q Consensus 166 ~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta---~n 239 (298)
.+ ..-+.|..+|..+.. ..+-..++++.+=..+-. .-
T Consensus 185 -----------------------------------gL--~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~l 227 (311)
T PF12147_consen 185 -----------------------------------GL--EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDL 227 (311)
T ss_pred -----------------------------------CC--ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHH
Confidence 01 123367777754431 112345644433222222 22
Q ss_pred HHHHHHHHHHhccCCeEEEEec-cccccccCC----------CCCCccC--CCHHHHHHHHHhCCCEEE
Q psy3185 240 IVSFIETIFNILKPGGIWINLG-PLLYHYSNM----------LNEDSIE--PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 240 ~~~yl~~I~~~LkpGG~~In~g-Pl~y~~~~~----------~~~~~~~--ls~eEl~~~~~~~GF~i~ 295 (298)
+...+.-+.+++.|||++|--| | ||.... .+.+.+. =|..|+.++++++||+-+
T Consensus 228 v~~sl~gl~~al~pgG~lIyTgQP--wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 228 VRRSLAGLARALEPGGYLIYTGQP--WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCC--CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 5568999999999999999544 3 553321 1123333 589999999999999743
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=69.26 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=61.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.+.+||++|||+|-.+..+|+. +..|+..|..+ -+...+.-+.. |..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~----N~~-------------------------- 93 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL----NGS-------------------------- 93 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT----T----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh----ccc--------------------------
Confidence 4679999999999999999999 56899999999 55544431111 100
Q ss_pred CCCCCCCCCCCeeEEeccccc-c---ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-V---YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-~---~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.+..-|+.+ . ..+.++||+|+.+-.+-..+.....+++|.++|+|+|.++
T Consensus 94 ------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 94 ------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred ------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 001233444444322 1 1235789999988666566778899999999999988754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=72.65 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+..++..+.|..... +..+||++|-|.|..+.++.+.. -.++.+|+.+.++..|+.-+.
T Consensus 61 ~yhEml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~------------------ 121 (282)
T COG0421 61 IYHEMLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLP------------------ 121 (282)
T ss_pred HHHHHHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhcc------------------
Confidence 444444454422111 22499999999999999999997 569999999999999887322
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-CCceeEEEeccc--ccCcchH--HHHHHHHHHhccCCe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFF--IDCANNI--VSFIETIFNILKPGG 255 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ff--idta~n~--~~yl~~I~~~LkpGG 255 (298)
...... . ..++.++.+|-.++... .++||+|+.--. .-.++++ .+|++.++++|+|+|
T Consensus 122 ---------------~~~~~~-~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 122 ---------------EPSGGA-D-DPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred ---------------Cccccc-C-CCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 111000 1 25888999998887653 348999875321 1233443 579999999999999
Q ss_pred EEEE
Q psy3185 256 IWIN 259 (298)
Q Consensus 256 ~~In 259 (298)
+++.
T Consensus 185 i~v~ 188 (282)
T COG0421 185 IFVA 188 (282)
T ss_pred EEEE
Confidence 9984
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=73.89 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=71.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH---------cCCeEEEeeCCHHHHHHHHHHHh-hhhhcccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR---------RGYVCQGNEFSLFMLFASNFILN-KCREKNVYKI 172 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~---------~G~~v~g~D~S~~Ml~~a~~~l~-~~~~~~~~~i 172 (298)
|.+.+.+.... .++.+||||.||+|.+..++.+ ....+.|+|+++.++..|+.-+- +...
T Consensus 34 i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~------ 103 (311)
T PF02384_consen 34 IVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID------ 103 (311)
T ss_dssp HHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH------
T ss_pred HHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc------
Confidence 45555555442 2456899999999999888876 35679999999999887754211 0000
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC--CCceeEEEec--cccc-------------
Q psy3185 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH--PNKWDCVATC--FFID------------- 235 (298)
Q Consensus 173 ~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~--~~~fD~V~t~--ffid------------- 235 (298)
..+..+..+|...-... ..+||+|++. |-..
T Consensus 104 --------------------------------~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 104 --------------------------------NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp --------------------------------CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred --------------------------------cccccccccccccccccccccccccccCCCCccccccccccccccccc
Confidence 01234566665443322 3678888775 2211
Q ss_pred ------CcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 236 ------CANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 236 ------ta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
+...-..++..+.+.||+||..+.+-|-
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 0111235889999999999998766563
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=70.22 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=77.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-----------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc-ccc--ccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-----------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP-WVQ--QTDNNIL 184 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-----------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p-~~~--~~s~~~~ 184 (298)
...+|..+||+||--++-||.. .++|.|.|+|..+|..|+. -+|| -.. ..+....
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~-----------G~Y~~~~~~~~~~~~~~ 164 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA-----------GIYPSRELLRGLPPELL 164 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc-----------CCCChhHhhccCCHHHH
Confidence 4789999999999987777642 2579999999999998874 1233 000 0000000
Q ss_pred ---cccccc-ccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEE
Q psy3185 185 ---THHQTM-AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 185 ---~~~~~r-~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....-- .++|-+ .+ ...+.|...|...-..-.+.||+|+|--++= ..+-....++.++..|+|||+++
T Consensus 165 ~ryF~~~~~~~y~v~~----~i--r~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 165 RRYFERGGDGSYRVKE----EL--RKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred hhhEeecCCCcEEECh----HH--hcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEE
Confidence 000000 122211 00 2467778888766543468899998743221 33445789999999999999987
Q ss_pred Eecc
Q psy3185 259 NLGP 262 (298)
Q Consensus 259 n~gP 262 (298)
+|+
T Consensus 239 -lG~ 241 (268)
T COG1352 239 -LGH 241 (268)
T ss_pred -Ecc
Confidence 454
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=74.83 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=68.6
Q ss_pred CCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||++||+|-++..+|.. |. .|+++|.++.++..++.-+.. |.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N~---------------------------- 105 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----NG---------------------------- 105 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----hC----------------------------
Confidence 468999999999999999876 43 799999999999887752211 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+ .+..+..+|+..+....++||+|+.-=| -....+++...+.++|||++.
T Consensus 106 ----~---~~~~v~~~Da~~~l~~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 106 ----L---ENEKVFNKDANALLHEERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred ----C---CceEEEhhhHHHHHhhcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEE
Confidence 0 1345788887665432467998875322 234578888667789999885
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.98 E-value=6e-05 Score=75.66 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=36.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC----------CeEEEeeCCHHHHHHHHHHHh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG----------YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G----------~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+.+|||||||+|.+...++... -+++|+|+++..+..++..+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 35699999999999999887642 358999999999988876543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=66.98 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.++.+|....|. -.+.+|||.|||.|--++..... -.+++++|.|..|+..++.++....... ..+
T Consensus 20 ~vl~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~---~~~---- 88 (274)
T PF09243_consen 20 RVLSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR---NAE---- 88 (274)
T ss_pred HHHHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc---cch----
Confidence 388888887763 24679999999999877766553 2469999999999999998765321100 000
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~ 256 (298)
.......++..+ ...|+|++.|.|... ....++++.+.+.+.+ +
T Consensus 89 ----------------------------~~~~~~~~~~~~----~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~ 134 (274)
T PF09243_consen 89 ----------------------------WRRVLYRDFLPF----PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--V 134 (274)
T ss_pred ----------------------------hhhhhhcccccC----CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--c
Confidence 000111222222 223999999887644 4456677777777766 6
Q ss_pred EEEecccc-ccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 257 WINLGPLL-YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 257 ~In~gPl~-y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+|-+-|=. -+|. ..-++++.+.+.|+.+.
T Consensus 135 LVlVEpGt~~Gf~----------~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 135 LVLVEPGTPAGFR----------RIAEARDQLLEKGAHVV 164 (274)
T ss_pred EEEEcCCChHHHH----------HHHHHHHHHhhCCCceE
Confidence 66554410 0111 14556666666666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00015 Score=67.79 Aligned_cols=130 Identities=17% Similarity=0.070 Sum_probs=82.9
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
++++.+.+.. .++..+||.+||.|..+..+++.+ ..|+|+|.++.|+..++..+..
T Consensus 8 l~Evl~~L~~----~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----------------- 66 (296)
T PRK00050 8 LDEVVDALAI----KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----------------- 66 (296)
T ss_pred HHHHHHhhCC----CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----------------
Confidence 3455555432 246799999999999999999884 6799999999999998763321
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCC--ceeEEE-----ecccccCcchHHHHHHHHHHhc
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPN--KWDCVA-----TCFFIDCANNIVSFIETIFNIL 251 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~--~fD~V~-----t~ffidta~n~~~yl~~I~~~L 251 (298)
..++.++.+||.++.. +.+ ++|+|+ |++-||.++-
T Consensus 67 ------------------------~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvSs~Qld~~~R------------ 110 (296)
T PRK00050 67 ------------------------FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVSSPQLDDAER------------ 110 (296)
T ss_pred ------------------------CCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCccccccCCCcC------------
Confidence 1378889999987642 112 677764 4455554432
Q ss_pred cCCeEE-EEeccccccccCCCCCC----ccCCCHHHHHHHHHhCCCE
Q psy3185 252 KPGGIW-INLGPLLYHYSNMLNED----SIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 252 kpGG~~-In~gPl~y~~~~~~~~~----~~~ls~eEl~~~~~~~GF~ 293 (298)
|.= -.-|||---........ --.++.++|..++..+|-+
T Consensus 111 ---GFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee 154 (296)
T PRK00050 111 ---GFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEE 154 (296)
T ss_pred ---CcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCc
Confidence 221 12355532221110000 1137899999999998854
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.4e-05 Score=69.26 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++..||++|+|+|.|+..|++++..|+|+|+...|+..-+....
T Consensus 18 v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-------------------- 73 (259)
T COG0030 18 VIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-------------------- 73 (259)
T ss_pred HHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--------------------
Confidence 55555555442 236799999999999999999999999999999999876554211
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCC-ceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN-KWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~-~fD~V~t~ 231 (298)
...++.++.||+..+..+.- .++.||++
T Consensus 74 ---------------------~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 74 ---------------------PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred ---------------------cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 12589999999998865432 56766654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.9e-05 Score=66.60 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=70.8
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNKCR 165 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~~~ 165 (298)
||..-..||. .|. +.+. ++..|||+-||.|-++..+|+ ++..|.|+|+++..+...+.-.
T Consensus 84 fs~rl~~Er~----Ri~----~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni---- 145 (200)
T PF02475_consen 84 FSPRLSTERR----RIA----NLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI---- 145 (200)
T ss_dssp --GGGHHHHH----HHH----TC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH----
T ss_pred EccccHHHHH----HHH----hcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH----
Confidence 8887677885 233 2232 367999999999999999999 6778999999998776554311
Q ss_pred hccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHH
Q psy3185 166 EKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIE 245 (298)
Q Consensus 166 ~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~ 245 (298)
..| . + ...+....||..++.. .+.+|-|+... .+.-.+|+.
T Consensus 146 ~lN---------------------------k-----v--~~~i~~~~~D~~~~~~-~~~~drvim~l----p~~~~~fl~ 186 (200)
T PF02475_consen 146 RLN---------------------------K-----V--ENRIEVINGDAREFLP-EGKFDRVIMNL----PESSLEFLD 186 (200)
T ss_dssp HHT---------------------------T--------TTTEEEEES-GGG----TT-EEEEEE------TSSGGGGHH
T ss_pred HHc---------------------------C-----C--CCeEEEEcCCHHHhcC-ccccCEEEECC----hHHHHHHHH
Confidence 111 0 1 1367889999988865 78999777654 222346888
Q ss_pred HHHHhccCCeEE
Q psy3185 246 TIFNILKPGGIW 257 (298)
Q Consensus 246 ~I~~~LkpGG~~ 257 (298)
....++|+||+.
T Consensus 187 ~~~~~~~~~g~i 198 (200)
T PF02475_consen 187 AALSLLKEGGII 198 (200)
T ss_dssp HHHHHEEEEEEE
T ss_pred HHHHHhcCCcEE
Confidence 899999998854
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=69.14 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=70.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+.-|||+|||.|-|++..|..|. +|.++|.|. |...|+.+... |.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~----N~---------------------------- 223 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS----NN---------------------------- 223 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc----CC----------------------------
Confidence 466899999999999999999997 599999985 77777765431 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+ ..+++++.|...++. -+++.|++++- +.|-...-+..|+-. .+.|||.|...
T Consensus 224 ----~--~~rItVI~GKiEdie-LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 224 ----L--ADRITVIPGKIEDIE-LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred ----c--cceEEEccCcccccc-CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 0 135667777776664 36799999874 344444444556544 49999999873
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=61.44 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=73.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC---eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY---VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~---~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.+.-||++|.|||-++..+-++|. +++++|+|......-+.. +|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~---------------------------------~p 94 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL---------------------------------YP 94 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh---------------------------------CC
Confidence 567899999999999999999985 599999999987654431 22
Q ss_pred CCCCCCCCCCCCeeEEeccccccc-----cCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEE--eccc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY-----VHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWIN--LGPL 263 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~-----~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In--~gPl 263 (298)
...+..||...+- .....||+|+|+.=+- ...--.++++.....|.+||.++- .||+
T Consensus 95 -----------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 95 -----------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred -----------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 2335666665543 1346899999985322 223346899999999999999874 4653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.4e-05 Score=66.58 Aligned_cols=99 Identities=22% Similarity=0.301 Sum_probs=72.5
Q ss_pred CeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
..+|++|||.|+...++|++. ..+.|+|....-+..+.. +..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~---k~~~~------------------------------- 95 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALK---KIKEL------------------------------- 95 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHH---HHHHc-------------------------------
Confidence 589999999999999999995 469999999887765543 22211
Q ss_pred CCCCCCCCCeeEEeccccccc---cCCCceeEEEeccccc------C-cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFID------C-ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffid------t-a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.+ .|+.+..+|..++. .++++.|-|.-+|= | + -.-+ ..+++.+.++|||||.+-.
T Consensus 96 --~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 96 --GL---KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred --CC---CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 11 28889999977653 35569998887762 2 1 1111 3799999999999998853
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.1e-05 Score=71.11 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+.++||+|+|-|-++..++...-+|.|.|.|..|...-+. + .+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k---k-----~y--------------------------- 155 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK---K-----NY--------------------------- 155 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh---c-----CC---------------------------
Confidence 346799999999999999888877789999999999875443 1 01
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccC-CeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKP-GGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~Lkp-GG~~In 259 (298)
++ +..- +....+-+||+|.+.-.+|...+....++.|+.+|.| +|..|.
T Consensus 156 ---------nV-l~~~---ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 156 ---------NV-LTEI---EWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ---------ce-eeeh---hhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 00 0011 1111234799998888999999999999999999999 787764
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.1e-05 Score=71.63 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=36.2
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+|||+|||+|.++..||+....|+|+|.|..|+..++.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY 237 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 479999999999999999987789999999999998876
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=63.83 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.++||+=||+|.++.|...+|. .|+.+|.|...+...+.-+.+...
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-------------------------------- 90 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-------------------------------- 90 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---------------------------------
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC--------------------------------
Confidence 67999999999999999999997 599999999988776663332110
Q ss_pred CCCCCCCCCeeEEecccccccc----CCCceeEEEec--ccccCcchHHHHHHHHH--HhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFIDCANNIVSFIETIF--NILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffidta~n~~~yl~~I~--~~LkpGG~~In 259 (298)
........+|+..... ...+||+|+.- |..... +...++.+. .+|+++|++|.
T Consensus 91 ------~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 91 ------EDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp ------GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEE
T ss_pred ------CcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEE
Confidence 1246677777554432 35899998642 221111 355677776 78999998873
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.5e-05 Score=71.68 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=36.1
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+|||++||+|.++..||+....|+|+|.|..|+..++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY 246 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH
Confidence 479999999999999999887789999999999998876
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=63.28 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++...+|+|||+|+.....|.. |+. +.|+|+.+.-...|.......... . + ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~---~-------------------~~g 97 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--M---K-------------------HYG 97 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--H---H-------------------HCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--H---H-------------------Hhh
Confidence 4679999999999999988855 776 999999999888777654332110 0 0 000
Q ss_pred CCCCCCCCCCCeeEEeccccccccCC---CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHP---NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
.. ...+.+..|||.+..... ..-|+|+..-++= .+++...|.++...||||-.+|..-|+
T Consensus 98 ~~------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 98 KR------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp B---------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred cc------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 00 146788899997653211 2347776543221 245677888888999999999975554
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=76.15 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=75.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC----------------------------------------
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---------------------------------------- 141 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---------------------------------------- 141 (298)
.+...+...-.. ..++..++||+||+|.++.|.|..+
T Consensus 176 tlAaa~l~~a~w---~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 176 NLAAAILLRSGW---PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHHcCC---CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 455555544321 1246789999999999999987631
Q ss_pred ----CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccc
Q psy3185 142 ----YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQ 217 (298)
Q Consensus 142 ----~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~ 217 (298)
..++|+|+++.|+..|+.-+... .+ ...+.+..+|+.+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~------------------------------------g~--~~~i~~~~~D~~~ 294 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRA------------------------------------GV--AELITFEVKDVAD 294 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHc------------------------------------CC--CcceEEEeCChhh
Confidence 25899999999999988732210 01 1357789999988
Q ss_pred cccC--CCceeEEEec--cccc--CcchHHHHHHHHHHhcc---CCeEEE
Q psy3185 218 VYVH--PNKWDCVATC--FFID--CANNIVSFIETIFNILK---PGGIWI 258 (298)
Q Consensus 218 ~~~~--~~~fD~V~t~--ffid--ta~n~~~yl~~I~~~Lk---pGG~~I 258 (298)
+... .++||+|+|. |... ...++.+..+.+.+.|| ||+...
T Consensus 295 ~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 295 LKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred cccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 7543 3579999997 4432 23444444445555554 776654
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=66.92 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=90.1
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
...+|.|.|+||++-.+....-.|.|+++...-+..+..-+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~--------------------------------------- 219 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL--------------------------------------- 219 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh---------------------------------------
Confidence 57899999999999999996557999999988766543200
Q ss_pred CCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEecccccc---ccCC-C---
Q psy3185 201 DYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGPLLYH---YSNM-L--- 271 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~---~~~~-~--- 271 (298)
. ..+..+.||+..-.+ +=|+|+..+.|+ |-++..++|+++++.|+|||..|....+.=. +.+. .
T Consensus 220 --~--~gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~ 292 (342)
T KOG3178|consen 220 --A--PGVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVT 292 (342)
T ss_pred --c--CCcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCcccccccee
Confidence 0 124567777654422 234999999988 5567899999999999999999854432211 1000 0
Q ss_pred ----------CCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 272 ----------NEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 272 ----------~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
.+...+.+..|...++.+.||...
T Consensus 293 ~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 293 RDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 023556788888888888888653
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0018 Score=56.43 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=84.4
Q ss_pred HHHHHHhhhccCChH-----HHhhhhHHHHHHHHh--hCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCC
Q psy3185 80 TLKQFVRDWSEEGSE-----ERKTCYEPIISEILA--RFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFS 150 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~-----ER~~~~~~i~~~l~~--~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S 150 (298)
.+.++...|.....- ..+.....+++.|.- .++. ...+++|+|+|.|--+.-||-. ..+++.+|-+
T Consensus 7 ~y~~lL~~~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~-----~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~ 81 (184)
T PF02527_consen 7 QYLELLLEWNKKINLTSIRDPEEIWERHILDSLALLPFLPD-----FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV 81 (184)
T ss_dssp HHHHHHHHHHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-C-----CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHhCceeeeccCCCHHHHHHHHHHHHHHhhhhhcc-----CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence 444555667652221 222233356665542 2331 2338999999999988877754 4679999999
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
..-...-+.+.... .+ .|+.+..+...+ ....++||+|++
T Consensus 82 ~KK~~FL~~~~~~L------------------------------------~L---~nv~v~~~R~E~-~~~~~~fd~v~a 121 (184)
T PF02527_consen 82 GKKVAFLKEVVREL------------------------------------GL---SNVEVINGRAEE-PEYRESFDVVTA 121 (184)
T ss_dssp HHHHHHHHHHHHHH------------------------------------T----SSEEEEES-HHH-TTTTT-EEEEEE
T ss_pred chHHHHHHHHHHHh------------------------------------CC---CCEEEEEeeecc-cccCCCccEEEe
Confidence 98665555433210 11 378888888877 335689999988
Q ss_pred cccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 231 CFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 231 ~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
--+ ..+..+++-...+|||||.++-
T Consensus 122 RAv----~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 122 RAV----APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ESS----SSHHHHHHHHGGGEEEEEEEEE
T ss_pred ehh----cCHHHHHHHHHHhcCCCCEEEE
Confidence 643 3566788888999999999984
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00026 Score=64.78 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.|.+.-+. +++..||++|-|||.|+..|-..|..|.|+|..+.|+..-....+.
T Consensus 46 v~~~I~~ka~~----k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g------------------- 102 (315)
T KOG0820|consen 46 VIDQIVEKADL----KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG------------------- 102 (315)
T ss_pred HHHHHHhccCC----CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC-------------------
Confidence 66777655442 4677999999999999999999999999999999999765543221
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
.|....+.+..|||.... .-.||++++
T Consensus 103 -------------------tp~~~kLqV~~gD~lK~d--~P~fd~cVs 129 (315)
T KOG0820|consen 103 -------------------TPKSGKLQVLHGDFLKTD--LPRFDGCVS 129 (315)
T ss_pred -------------------CCccceeeEEecccccCC--Ccccceeec
Confidence 122357899999997763 357898877
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00036 Score=64.02 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHH
Q psy3185 94 EERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 94 ~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~ 159 (298)
.|.+...+.+++.+...-- ..+..|||+|||+|-++..++.. + ..|+|+|.|...+..|..
T Consensus 128 pETEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e 190 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE 190 (328)
T ss_pred ccHHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH
Confidence 4556666667776664322 13458999999999999998865 4 569999999999987766
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00047 Score=67.66 Aligned_cols=100 Identities=21% Similarity=0.345 Sum_probs=75.7
Q ss_pred CeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
.++|.+|||.-++..++.+-||. ++.+|+|+--+.+..... + +
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~-~-------~---------------------------- 93 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRN-A-------K---------------------------- 93 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcc-c-------c----------------------------
Confidence 49999999999999999999996 999999999877654311 0 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEec-----ccccC-----cchHHHHHHHHHHhccCCeEEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-----FFIDC-----ANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-----ffidt-----a~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...-+.|...|....++++++||+|+-- +|-|- ...+...+..++++|+|||..+++
T Consensus 94 ----~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 94 ----ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ----CCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 0135668888888888889999988742 22221 123457899999999999998864
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=61.84 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=82.6
Q ss_pred CChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccc
Q psy3185 91 EGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVY 170 (298)
Q Consensus 91 ~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~ 170 (298)
-++.||-..|...++... ...+.|+|+|+|-|++--|..--.|.++|..+.-..++..-+
T Consensus 15 L~D~eRlavF~~ai~~va-----------~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~--------- 74 (252)
T COG4076 15 LRDVERLAVFTSAIAEVA-----------EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENL--------- 74 (252)
T ss_pred hhhHHHHHHHHHHHHHHh-----------hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcC---------
Confidence 456688877776665554 258999999999999998888778999999999776665410
Q ss_pred ccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc---hHHHHHHHH
Q psy3185 171 KIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN---NIVSFIETI 247 (298)
Q Consensus 171 ~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~---n~~~yl~~I 247 (298)
++ +...|++++.||...+-+ +.-|+|+ |-+|||+- .....+..+
T Consensus 75 ----------------------~v--------~g~~n~evv~gDA~~y~f--e~ADvvi-cEmlDTaLi~E~qVpV~n~v 121 (252)
T COG4076 75 ----------------------HV--------PGDVNWEVVVGDARDYDF--ENADVVI-CEMLDTALIEEKQVPVINAV 121 (252)
T ss_pred ----------------------CC--------CCCcceEEEecccccccc--cccceeH-HHHhhHHhhcccccHHHHHH
Confidence 11 233689999999988754 4556554 56688773 334566666
Q ss_pred HHhccCCeEEE
Q psy3185 248 FNILKPGGIWI 258 (298)
Q Consensus 248 ~~~LkpGG~~I 258 (298)
-..||-.|..|
T Consensus 122 leFLr~d~tii 132 (252)
T COG4076 122 LEFLRYDPTII 132 (252)
T ss_pred HHHhhcCCccc
Confidence 67777777765
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00037 Score=69.82 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
..+..+||+|||.|....++|... ..+.|+|.+..-+..+.. +....
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~---~~~~~---------------------------- 394 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK---LAGEQ---------------------------- 394 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH---HHHHc----------------------------
Confidence 346789999999999999999985 569999999886554432 21110
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--cCCCceeEEEeccccc-----Ccch-H--HHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFID-----CANN-I--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffid-----ta~n-~--~~yl~~I~~~LkpGG~~In 259 (298)
.+ .|+.++.+|+..+. .++++.|.|..+|==- +... + .++++.++++|||||.+-.
T Consensus 395 -----~l---~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 395 -----NI---TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred -----CC---CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 01 35666666664321 3567888887766211 1111 1 3799999999999998753
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00085 Score=63.40 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=80.5
Q ss_pred HHHHHHhhhccCChHHHh--hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHH----HHHc--CCeEEEeeCCH
Q psy3185 80 TLKQFVRDWSEEGSEERK--TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFE----IARR--GYVCQGNEFSL 151 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~ER~--~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~e----la~~--G~~v~g~D~S~ 151 (298)
-+.++++ .+|+.+-|. ..++.-...|.+.++ ++..|+++|||.|+=+.- |.+. +...+++|+|.
T Consensus 43 LFe~It~--lpEYYptr~E~~iL~~~~~~Ia~~i~------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 43 LFEEITY--SPEYYLTNDEIEILKKHSSDIAASIP------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred HHHHHHc--CCccCChHHHHHHHHHHHHHHHHhcC------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 4455553 456655554 234444556666666 356899999999996443 2222 46789999999
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc---C---CCce
Q psy3185 152 FMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV---H---PNKW 225 (298)
Q Consensus 152 ~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~---~---~~~f 225 (298)
.+|..+...+.. -.+|. ..+.-+.|||.+... . .+..
T Consensus 115 ~~L~~a~~~L~~----------------------------~~~p~---------l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 115 SELQRTLAELPL----------------------------GNFSH---------VRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred HHHHHHHHhhhh----------------------------ccCCC---------eEEEEEEecHHHHHhhcccccccCCc
Confidence 999877653320 01111 133447777755321 1 1234
Q ss_pred eEEEec-cccc--CcchHHHHHHHHHH-hccCCeEEE
Q psy3185 226 DCVATC-FFID--CANNIVSFIETIFN-ILKPGGIWI 258 (298)
Q Consensus 226 D~V~t~-ffid--ta~n~~~yl~~I~~-~LkpGG~~I 258 (298)
.+|+.. ..|- +.++...+|+.|++ .|+|||.++
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 444322 1122 34556789999999 999998886
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0019 Score=60.15 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+||++=|=||.++...+..|. +|+++|.|..++..++.-+. .|.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~----lNg----------------------------- 170 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAA----LNG----------------------------- 170 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHH----HTT-----------------------------
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH----HcC-----------------------------
Confidence 57999999999999999888886 59999999999998876211 111
Q ss_pred CCCCCCCCCeeEEecccccccc---CCCceeEEEec--ccccC----cchHHHHHHHHHHhccCCeEEEEeccccccccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATC--FFIDC----ANNIVSFIETIFNILKPGGIWINLGPLLYHYSN 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~--ffidt----a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~ 269 (298)
+. .....++.+|..++.. ..++||+|+.= -|.-. ..+..+.+....++|+|||+++.+.
T Consensus 171 ---~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s-------- 238 (286)
T PF10672_consen 171 ---LD-LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS-------- 238 (286)
T ss_dssp ----C-CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--------
T ss_pred ---CC-ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc--------
Confidence 01 1367888999876542 35799988751 11111 2344567778889999999987321
Q ss_pred CCCCCccCCCHHHHHHHHHh
Q psy3185 270 MLNEDSIEPSYEVVKQVIQG 289 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~ 289 (298)
-+..++.+.+.+.+..
T Consensus 239 ----cs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 239 ----CSHHISPDFLLEAVAE 254 (286)
T ss_dssp ------TTS-HHHHHHHHHH
T ss_pred ----CCcccCHHHHHHHHHH
Confidence 1344555666665544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=60.99 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=36.2
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
-.+.+++|+|||+|.|....+..+.+ |.|+|+.+..|+.++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhh
Confidence 35789999999999999777777765 9999999999988765
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=62.45 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~ 152 (298)
++.+|||+||+.|..+..+.+++ ..|.|+|..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999998 67999999875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00039 Score=59.46 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=49.7
Q ss_pred eEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
.|||+.||.|..+..+|+.+..|+|+|+++..+..++. .+ .+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~h---Na------~vY---------------------------- 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKH---NA------EVY---------------------------- 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH---HH------HHT----------------------------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHH---HH------HHc----------------------------
Confidence 69999999999999999999899999999999998876 11 111
Q ss_pred CCCCCCeeEEeccccccccC--CCc-eeEEEe
Q psy3185 202 YNDDCDFSMAAGDFLQVYVH--PNK-WDCVAT 230 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~--~~~-fD~V~t 230 (298)
.-..++.++.|||.++... .+. +|+|+.
T Consensus 45 -Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 45 -GVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp -T-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred -CCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 0014789999999887532 122 798873
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=54.23 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCCCeEEEecccCcHHHHHHHH------cCCeEEEeeCCHHHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR------RGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~------~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+...|+|+|||.|.|+..|+. .+..|+|+|.++.++..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 3567999999999999999999 3788999999999998877643
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00063 Score=65.66 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCeEEEecccCcHHHHHHHHc--CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+.||+|-.+.+++.+ |. .|++||.++..+...+.-+.. +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N---------------------------- 92 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N---------------------------- 92 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------------
Confidence 469999999999999999998 54 699999999988776552111 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|+..+... ..+||+|.. |.-.....+++.+.+.+++||++..
T Consensus 93 -------~~~~~~v~~~Da~~~l~~~~~~fDvIdl----DPfGs~~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 93 -------SVENIEVPNEDAANVLRYRNRKFHVIDI----DPFGTPAPFVDSAIQASAERGLLLV 145 (374)
T ss_pred -------CCCcEEEEchhHHHHHHHhCCCCCEEEe----CCCCCcHHHHHHHHHhcccCCEEEE
Confidence 002466777887766432 357998753 4433445899999999999998753
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0018 Score=62.81 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+||++=|=||..+...|..|. +||+||.|...|..|+.-.. .| .+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~----LN---------------------------g~ 265 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE----LN---------------------------GL 265 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH----hc---------------------------CC
Confidence 367899999999999999999999 79999999999998876211 11 11
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEec--ccc-------cCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFI-------DCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffi-------dta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. .....++.+|..++.. ...+||+|+.= -|. +-..+....+....++|+|||+++.
T Consensus 266 -----~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 266 -----D-GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred -----C-ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1 1356789999877653 23599999851 121 1234455677777889999999984
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0049 Score=54.65 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=80.3
Q ss_pred EEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 123 ILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 123 VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
|.|+||-=|.|+..|++.|. .|.++|+++.-+..|+.-+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~----------------------------------- 45 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG----------------------------------- 45 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----------------------------------
Confidence 68999999999999999997 59999999999998887544310
Q ss_pred CCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCH
Q psy3185 201 DYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSY 280 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~ 280 (298)
+ ...+....||-.+...+.+..|+|+-+=+ -..-+.+.|+.....++....+| +.|.. ..
T Consensus 46 -l--~~~i~~rlgdGL~~l~~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lI-LqP~~--------------~~ 105 (205)
T PF04816_consen 46 -L--EDRIEVRLGDGLEVLKPGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLI-LQPNT--------------HA 105 (205)
T ss_dssp ----TTTEEEEE-SGGGG--GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEE-EEESS---------------H
T ss_pred -C--cccEEEEECCcccccCCCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEE-EeCCC--------------Ch
Confidence 1 14688889996555433334787665421 22235566777777776655666 55631 27
Q ss_pred HHHHHHHHhCCCEEEEe
Q psy3185 281 EVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 281 eEl~~~~~~~GF~i~~~ 297 (298)
.+|++++.+.||.|++|
T Consensus 106 ~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 106 YELRRWLYENGFEIIDE 122 (205)
T ss_dssp HHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 89999999999999987
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=59.58 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCeEEEeccc-CcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 120 DVNILVPGAG-LGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 120 ~~~VLdpGcG-~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+.+|+-+||| +---+..||++ |..|+++|.++..+..|+.+.+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~------------------------------ 170 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL------------------------------ 170 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---------------------------------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc------------------------------
Confidence 4599999999 67777888865 4569999999999999988655210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc-CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID-CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid-ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+ + ...+.+..+|..+...+-..||+|+-+-..- ++++..+.|+.+.+.++||..++-
T Consensus 171 ~-----L--~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 171 G-----L--SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp H-----H---SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred c-----c--cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 0 1 1478999999988765557999887765553 677889999999999999998873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=60.64 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.... .++..||++|+|+|.++.+|++.|-.|+++|.+..+....+.
T Consensus 18 ~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~ 70 (262)
T PF00398_consen 18 IADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKE 70 (262)
T ss_dssp HHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHH
Confidence 45555554442 247899999999999999999999889999999998765543
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=61.38 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~ 151 (298)
.++.++||+||++|..++.|+++|..|+|||.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh
Confidence 3578999999999999999999999999999654
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0089 Score=51.92 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=33.4
Q ss_pred CCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~ 159 (298)
..-+|++|||+|-.+-.|++. | .-+.+.|+++..+.+...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~ 86 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLE 86 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHH
Confidence 457899999999999999986 3 347799999999887654
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0031 Score=56.08 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=82.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.||+..+.+... .++.+||.+|-|.|-..-.+.++. ..=+-+|..+..+..-+. .
T Consensus 88 tpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~---~---------------- 143 (271)
T KOG1709|consen 88 TPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD---W---------------- 143 (271)
T ss_pred hHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh---c----------------
Confidence 468887777665 358899999999999999988774 557788888887654332 1
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.+ -+..|+.+..|-..++.. +++.||.|.---|-..-+++..+.+.+.++|||+|++
T Consensus 144 ------------------gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 144 ------------------GW---REKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred ------------------cc---ccccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceE
Confidence 00 123577777777666543 4678999875444445578889999999999999998
Q ss_pred E
Q psy3185 258 I 258 (298)
Q Consensus 258 I 258 (298)
-
T Consensus 203 S 203 (271)
T KOG1709|consen 203 S 203 (271)
T ss_pred E
Confidence 4
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0041 Score=61.82 Aligned_cols=44 Identities=18% Similarity=0.065 Sum_probs=37.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
++.+|||.+||.|.=+..||.. + ..|+++|+|...+...+..+.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5789999999999999999986 2 479999999999887766444
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0069 Score=54.30 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=87.8
Q ss_pred cchHHHHHHHHHH-HhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEe
Q psy3185 72 TDLEKVQTTLKQF-VRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGN 147 (298)
Q Consensus 72 ~~~~~v~~~l~~~-~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~ 147 (298)
..+..++++-... ..-|.....+|--+ ++..+.+.+. ..+.|++|.=||.=+...|.. +..|+++
T Consensus 36 ~~l~el~e~t~~~~~~~~~m~v~~d~g~----fl~~li~~~~-------ak~~lelGvfTGySaL~~Alalp~dGrv~a~ 104 (237)
T KOG1663|consen 36 ELLKELREATLTYPQPGSEMLVGPDKGQ----FLQMLIRLLN-------AKRTLELGVFTGYSALAVALALPEDGRVVAI 104 (237)
T ss_pred HHHHHHHHHHhhcCCcccceecChHHHH----HHHHHHHHhC-------CceEEEEecccCHHHHHHHHhcCCCceEEEE
Confidence 3444555444444 35676666666543 5666665553 569999998777766665554 7889999
Q ss_pred eCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------C
Q psy3185 148 EFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------H 221 (298)
Q Consensus 148 D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~ 221 (298)
|....-...+..+...+ . - ...+++.+|+..+... +
T Consensus 105 eid~~~~~~~~~~~k~a-g--v-----------------------------------~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 105 EIDADAYEIGLELVKLA-G--V-----------------------------------DHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred ecChHHHHHhHHHHHhc-c--c-----------------------------------cceeeeeecchhhhHHHHHhcCC
Confidence 99999888775543221 1 0 1245566666554321 4
Q ss_pred CCceeEEEeccccc-CcchHHHHHHHHHHhccCCeEEE
Q psy3185 222 PNKWDCVATCFFID-CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 222 ~~~fD~V~t~ffid-ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.++||.|+ +| .-.|-..|.++.-++||+||+++
T Consensus 147 ~~tfDfaF----vDadK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 147 SGTFDFAF----VDADKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred CCceeEEE----EccchHHHHHHHHHHHhhcccccEEE
Confidence 68999864 55 33455689999999999999987
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00041 Score=63.85 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.-+||.|||.|....-= -..-+.|.|.+...+..++.
T Consensus 46 gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~---------------------------------------- 83 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKR---------------------------------------- 83 (293)
T ss_pred cceeeecccCCcccCcCC--Ccceeeecchhhhhcccccc----------------------------------------
Confidence 678999999999654321 12357888988876655432
Q ss_pred CCCCCCCCe-eEEeccccccccCCCceeEEEeccccc---CcchHHHHHHHHHHhccCCeEE
Q psy3185 200 SDYNDDCDF-SMAAGDFLQVYVHPNKWDCVATCFFID---CANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 200 ~~~~~~~~~-~~~~gDf~~~~~~~~~fD~V~t~ffid---ta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.+- .++.+|.+.++..+.+||.+++.-+|+ |.......++++.++|||||..
T Consensus 84 ------~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~ 139 (293)
T KOG1331|consen 84 ------SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNA 139 (293)
T ss_pred ------CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCce
Confidence 112 578889999988889999888877776 4455678999999999999963
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0028 Score=62.32 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+=||.|.++..||+++.+|+|+|.++.++..|++-.. .|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~----~n------------------------------ 338 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAA----AN------------------------------ 338 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHH----Hc------------------------------
Confidence 35699999999999999999999999999999999999987321 11
Q ss_pred CCCCCCCCCeeEEeccccccccCC---CceeEEEecccccCcc-hH-HHHHHHHHHhccCCeEEEEecc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHP---NKWDCVATCFFIDCAN-NI-VSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t~ffidta~-n~-~~yl~~I~~~LkpGG~~In~gP 262 (298)
...|+.+..||..++.... ..+|+|+ +|... -+ .+.++.|.+.--+.=+.|.+.|
T Consensus 339 -----~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP 398 (432)
T COG2265 339 -----GIDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNP 398 (432)
T ss_pred -----CCCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCH
Confidence 1136889999988775432 4778776 35322 12 2677777774434334455555
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=51.70 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=95.6
Q ss_pred HHHHHHhhhccCC-----hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHH
Q psy3185 80 TLKQFVRDWSEEG-----SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLF 152 (298)
Q Consensus 80 ~l~~~~RdWs~~g-----~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~ 152 (298)
...++...|.... ..+-+..-.-+++.+.-..... ..+.+++|+|+|.|--+.-||- ..-.|+-+|-...
T Consensus 26 ~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~---~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 26 AYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLD---GKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred HHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhccc---ccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 5555566776522 1122233344556554332211 1157999999999998888773 3556999998776
Q ss_pred HHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCc-eeEEEec
Q psy3185 153 MLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNK-WDCVATC 231 (298)
Q Consensus 153 Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~-fD~V~t~ 231 (298)
=...-+.+... + . -.|+.++.+...++.. ... ||+|++-
T Consensus 103 k~~FL~~~~~e---------------------------------L---~---L~nv~i~~~RaE~~~~-~~~~~D~vtsR 142 (215)
T COG0357 103 KIAFLREVKKE---------------------------------L---G---LENVEIVHGRAEEFGQ-EKKQYDVVTSR 142 (215)
T ss_pred HHHHHHHHHHH---------------------------------h---C---CCCeEEehhhHhhccc-ccccCcEEEee
Confidence 44333332111 0 1 1478888888877743 223 9999875
Q ss_pred ccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 232 FFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 232 ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
-+ .++....+-...++|+||.++. |.+... .=-..|....+...||.+++
T Consensus 143 Av----a~L~~l~e~~~pllk~~g~~~~-----~k~~~~------~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 143 AV----ASLNVLLELCLPLLKVGGGFLA-----YKGLAG------KDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred hc----cchHHHHHHHHHhcccCCcchh-----hhHHhh------hhhHHHHHHHHHhhcCcEEE
Confidence 43 3566778888899999998763 221110 00156677777777887765
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=56.56 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=98.4
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH--HHhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF--ILNKC 164 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~--~l~~~ 164 (298)
||..-..||. .+.+ .+. .+..|||+=||.|-++..+|+.|.. |.|+|+.+..+...+. .+|+
T Consensus 171 Fsprl~~ER~----Rva~----~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~- 235 (341)
T COG2520 171 FSPRLSTERA----RVAE----LVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK- 235 (341)
T ss_pred ECCCchHHHH----HHHh----hhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC-
Confidence 8888888886 2322 222 3679999999999999999999976 9999999998765543 1221
Q ss_pred hhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHH
Q psy3185 165 REKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFI 244 (298)
Q Consensus 165 ~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl 244 (298)
+ ...+....||..++....+.+|-|+....-+ -.+|+
T Consensus 236 --------------------------------v-------~~~v~~i~gD~rev~~~~~~aDrIim~~p~~----a~~fl 272 (341)
T COG2520 236 --------------------------------V-------EGRVEPILGDAREVAPELGVADRIIMGLPKS----AHEFL 272 (341)
T ss_pred --------------------------------c-------cceeeEEeccHHHhhhccccCCEEEeCCCCc----chhhH
Confidence 0 1247789999998876558899887765443 24688
Q ss_pred HHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEE
Q psy3185 245 ETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 245 ~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
....+++|+||+.- .|.+... ....+....++.....+.|.+.
T Consensus 273 ~~A~~~~k~~g~iH-----yy~~~~e--~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 273 PLALELLKDGGIIH-----YYEFVPE--DDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred HHHHHHhhcCcEEE-----EEeccch--hhcccchHHHHHHHHhhccCcc
Confidence 88888999988653 1222211 1112236788888888887644
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0031 Score=57.41 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=38.2
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
.+|||.=||+|+.++++|.+|+.|+++|-|+.+....+.-+.+
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999998776665544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0046 Score=59.20 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+++.+.+.++. .+.+|||+=||+|.++..||+.+-.|+|+|.+..|+..|+.
T Consensus 184 ~l~~~~~~~l~~-----~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~ 236 (352)
T PF05958_consen 184 KLYEQALEWLDL-----SKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE 236 (352)
T ss_dssp HHHHHHHHHCTT------TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHhhc-----CCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH
Confidence 355555555553 23389999999999999999999999999999999998876
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0068 Score=54.25 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHH
Q psy3185 83 QFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFML 154 (298)
Q Consensus 83 ~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml 154 (298)
--+|-|++.... +...|..-+.... -.++.+||-+|+.+|...-.++.- | ..|+|+|+|+.+.
T Consensus 46 ~eYR~W~P~RSK--------LaAai~~Gl~~~~-ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~ 111 (229)
T PF01269_consen 46 VEYRVWNPFRSK--------LAAAILKGLENIP-IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM 111 (229)
T ss_dssp EEEEEE-TTT-H--------HHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH
T ss_pred cceeecCchhhH--------HHHHHHcCccccC-CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH
Confidence 347889885422 3333432221000 135789999999999999998876 3 4799999999754
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0047 Score=58.70 Aligned_cols=42 Identities=26% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCCCeEEEeccc-CcHHHHHHHH-cCCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIAR-RGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+|++.|+| +|.+|..+|+ .|.+|+++|.|..=++.++.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 457899999886 7789999998 69999999999998877766
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0045 Score=49.16 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=47.8
Q ss_pred HHHHHH-HHHHhhhccCChHHHhhhhH--HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCC
Q psy3185 76 KVQTTL-KQFVRDWSEEGSEERKTCYE--PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 76 ~v~~~l-~~~~RdWs~~g~~ER~~~~~--~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S 150 (298)
++++.- +.++..|.+..+++.- .|+ -|..+|..+........+...-.|+|||.|-|.+-|.+.||.=.|+|.=
T Consensus 13 ~LK~kYa~~lv~~W~E~TdP~K~-VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 13 RLKEKYARWLVDNWPESTDPQKH-VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHHHhCcccCCchhh-HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 344444 4677889765555432 222 1233443333211112356789999999999999999999999999964
|
; GO: 0008168 methyltransferase activity |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=53.60 Aligned_cols=131 Identities=22% Similarity=0.165 Sum_probs=85.7
Q ss_pred hhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHh
Q psy3185 86 RDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 86 RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+|.-.=..--+..|.|=++.|...+.- +++.+||+-|.|.|.+++.||+.- ..+...|+-..-...|+.
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~e--- 148 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALE--- 148 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHH---
Confidence 3566544444456677767777766643 468899999999999999999983 569999996654444433
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchH
Q psy3185 163 KCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNI 240 (298)
Q Consensus 163 ~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~ 240 (298)
.-.+ -.++ .++.+..-|.+..-+ ....+|+|+ || .+++
T Consensus 149 eFr~-------------------------hgi~----------~~vt~~hrDVc~~GF~~ks~~aDaVF----LD-lPaP 188 (314)
T KOG2915|consen 149 EFRE-------------------------HGIG----------DNVTVTHRDVCGSGFLIKSLKADAVF----LD-LPAP 188 (314)
T ss_pred HHHH-------------------------hCCC----------cceEEEEeecccCCccccccccceEE----Ec-CCCh
Confidence 2111 1121 255555555443322 246777764 55 3567
Q ss_pred HHHHHHHHHhccCCe-EEEEeccc
Q psy3185 241 VSFIETIFNILKPGG-IWINLGPL 263 (298)
Q Consensus 241 ~~yl~~I~~~LkpGG-~~In~gPl 263 (298)
-+.+...+++||.+| +++++.|.
T Consensus 189 w~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 189 WEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred hhhhhhhHHHhhhcCceEEeccHH
Confidence 788899999999654 88998885
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.025 Score=54.11 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC-C-eEEEeeCCHHHHHHHHH--HHhhhhhccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG-Y-VCQGNEFSLFMLFASNF--ILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G-~-~v~g~D~S~~Ml~~a~~--~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
+.-.+||++|-|-|--+.||-+.. . +++-+|+.+.|++.++. ++. ..|+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr---~~N~~----------------------- 341 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLR---ALNQG----------------------- 341 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhh---hhccC-----------------------
Confidence 345689999999999999999984 4 69999999999999884 221 11111
Q ss_pred cCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcch-H-----HHHHHHHHHhccCCeEEEE
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANN-I-----VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n-~-----~~yl~~I~~~LkpGG~~In 259 (298)
++ .+.+++++..|..++.. ..++||+|+-- +.|.... + .++..-..+.|+++|.+|.
T Consensus 342 -------sf-~dpRv~Vv~dDAf~wlr~a~~~fD~vIVD-l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 342 -------SF-SDPRVTVVNDDAFQWLRTAADMFDVVIVD-LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred -------Cc-cCCeeEEEeccHHHHHHhhcccccEEEEe-CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 11 12578888888766653 34799987643 2342211 1 2466666778889999984
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0064 Score=54.93 Aligned_cols=80 Identities=26% Similarity=0.293 Sum_probs=50.2
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
.+|||.=||+|+.|+-+|..|++|+++|-|+.|....+.-|++.... + +...
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~------~---------------------~~~~- 128 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQD------P---------------------ELLA- 128 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHS------T---------------------TTHH-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhC------c---------------------HhHH-
Confidence 48999999999999999999999999999999987766655543221 0 0000
Q ss_pred CCCCCCCeeEEecccccccc-CCCceeEEEe
Q psy3185 201 DYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT 230 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t 230 (298)
....++++..+|..++.. ++++||+|..
T Consensus 129 --~~~~ri~l~~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 129 --EAMRRIQLIHGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp --HHHHHEEEEES-CCCHCCCHSS--SEEEE
T ss_pred --HHHhCCEEEcCCHHHHHhhcCCCCCEEEE
Confidence 001378899999888754 4589999964
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.051 Score=52.39 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=74.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-----------------------------------------eEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-----------------------------------------VCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-----------------------------------------~v~g~D~S~~Ml~~a~ 158 (298)
+..++||=||+|.++.|.|..+- ...|.|++..|+..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 46899999999999999998874 2679999999999987
Q ss_pred HHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--cc--c
Q psy3185 159 FILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF--I 234 (298)
Q Consensus 159 ~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff--i 234 (298)
. | +..+ .-...+.+.++|+..+..+.+.+|+|+|+ |- |
T Consensus 272 ~--N-A~~A-----------------------------------Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRl 313 (381)
T COG0116 272 A--N-ARAA-----------------------------------GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERL 313 (381)
T ss_pred H--H-HHhc-----------------------------------CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhc
Confidence 6 2 2211 11246889999999886544899999987 32 3
Q ss_pred cCcchHH----HHHHHHHHhccCCeEEEEecc
Q psy3185 235 DCANNIV----SFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 235 dta~n~~----~yl~~I~~~LkpGG~~In~gP 262 (298)
.+...+. ++.+++.+.++-.+..|..++
T Consensus 314 g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 314 GSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 3333333 344556666666667775554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0047 Score=50.50 Aligned_cols=39 Identities=18% Similarity=0.027 Sum_probs=34.4
Q ss_pred eEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~ 160 (298)
.|||+|||.|..+..+++.+. +|+++|.++.|+...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 489999999999999999876 499999999999877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.078 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.9
Q ss_pred CccCCCHHHHHHHHHhCC-CEEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLG-FVYEV 296 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~G-F~i~~ 296 (298)
|....|.+|+++++++.| |+|.+
T Consensus 283 P~Y~ps~eEv~~~Ie~~gsF~I~~ 306 (386)
T PLN02668 283 PVYAPSLQDFKEVVEANGSFAIDK 306 (386)
T ss_pred cccCCCHHHHHHHHhhcCCEEeee
Confidence 556689999999999877 87764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.022 Score=57.13 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.++.+||++|||. |..+...|+. |..|.++|.++.-+..++.+ . +. ...+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-G-A~---~v~i----------------------- 214 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-G-AE---FLEL----------------------- 214 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-Ce---EEEe-----------------------
Confidence 3578999999996 6666666665 89999999999988777652 1 10 0000
Q ss_pred CCCCCCCCCCCCeeEEecccc----ccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 196 DINTSDYNDDCDFSMAAGDFL----QVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~----~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+..........-..-...++. +.+.+ -+.+|+|+++-.+...+...-..++.-+.+||||+.+.+|
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 000000000000000001111 01111 1469999999877665444444689999999999998654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.1 Score=49.81 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=64.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.++.|....|. -...+|||+|.|-|.-++.+-.-- -+++-+|.|+..-....-+- ..++|
T Consensus 101 sL~~L~~~~~d----fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~--------~nv~t----- 163 (484)
T COG5459 101 SLDELQKRVPD----FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLA--------ENVST----- 163 (484)
T ss_pred HHHHHHHhCCC----cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHH--------hhccc-----
Confidence 56677766652 345679999999998887765432 23555666655433322211 11111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEE-eccccc--CcchHHHHHHHHHHhccCCeE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVA-TCFFID--CANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~-t~ffid--ta~n~~~yl~~I~~~LkpGG~ 256 (298)
...+. ...++.+ |-..+ +....|++|+ +.-.++ ....+..+|+....++.|||.
T Consensus 164 ----------------~~td~---r~s~vt~---dRl~l-p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~ 220 (484)
T COG5459 164 ----------------EKTDW---RASDVTE---DRLSL-PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGH 220 (484)
T ss_pred ----------------ccCCC---CCCccch---hccCC-CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCe
Confidence 00000 0112221 11122 2345677543 333332 233467799999999999999
Q ss_pred EEEecc
Q psy3185 257 WINLGP 262 (298)
Q Consensus 257 ~In~gP 262 (298)
++.+.|
T Consensus 221 lVivEr 226 (484)
T COG5459 221 LVIVER 226 (484)
T ss_pred EEEEeC
Confidence 986643
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.066 Score=48.39 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=81.1
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.++..+||+|+-||.++--+.++|.. |+|+|.+...|.-.-. . |
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR---~--------------------------------d 122 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR---N--------------------------------D 122 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh---c--------------------------------C
Confidence 46789999999999999999999975 9999999876542110 0 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccC--CCceeEEEe-cccccCcchHHHHHHHHHHhccCCeEEEE-eccccccccC-C-
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH--PNKWDCVAT-CFFIDCANNIVSFIETIFNILKPGGIWIN-LGPLLYHYSN-M- 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~--~~~fD~V~t-~ffidta~n~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~-~- 270 (298)
| .-..+-..++..+.++ .+..|.+++ .-|| .+...|..+..+|+|||-.+- +-|-.---.+ .
T Consensus 123 --~------rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~ 190 (245)
T COG1189 123 --P------RVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG 190 (245)
T ss_pred --C------cEEEEecCChhhCCHHHcccCCCeEEEEeehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC
Confidence 0 0112222333333211 124555443 3344 466789999999999998874 2332100000 0
Q ss_pred -----CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 -----LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 -----~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+........+++..++.+.||.+..
T Consensus 191 kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 191 KKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred cCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 11223345678899999999998864
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.061 Score=46.99 Aligned_cols=40 Identities=23% Similarity=0.030 Sum_probs=35.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+.++||+=||+|-++.|-+.+|. .|+.+|.+.......+.
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKE 84 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHH
Confidence 68999999999999999999996 59999999998776654
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.1 Score=46.19 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhhcc-CChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC---eEEEeeCC
Q psy3185 75 EKVQTTLKQFVRDWSE-EGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY---VCQGNEFS 150 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~-~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~---~v~g~D~S 150 (298)
.++.+.++..+.-|+. +|-.-| +.|. + .+|.+.+.. -+++.+|+|+||--|.-+..++++.. .|.|+|+-
T Consensus 6 ~wl~~~~~D~Y~~~Ak~~gyRSR-Aa~K-L-~el~~k~~i---~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~ 79 (205)
T COG0293 6 RWLAEHLRDPYYKKAKKEGYRSR-AAYK-L-LELNEKFKL---FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL 79 (205)
T ss_pred HHHHHhhcCHHHHHHhhccccch-HHHH-H-HHHHHhcCe---ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc
Confidence 4455566666666664 333333 2232 3 334333321 24578999999999999999888733 38999986
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--------CC
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--------HP 222 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--------~~ 222 (298)
+- .| . .++.+.+|||+.-.. ..
T Consensus 80 p~---------------------------------------------~~---~--~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 80 PM---------------------------------------------KP---I--PGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cc---------------------------------------------cc---C--CCceEEeeeccCccHHHHHHHHcCC
Confidence 52 00 1 257788888876432 23
Q ss_pred CceeEEEecc--------cccCcch---HHHHHHHHHHhccCCeEEEE
Q psy3185 223 NKWDCVATCF--------FIDCANN---IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 223 ~~fD~V~t~f--------fidta~n---~~~yl~~I~~~LkpGG~~In 259 (298)
...|+|+|=. -+|+..- ....++....+|+|||.++.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 4469888632 2343322 12456666779999999985
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.016 Score=51.79 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
...|+|.-||.|..+...|.+|..|.++|+++.=+.+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Akh 134 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARH 134 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhc
Confidence 4689999999999999999999999999999999988875
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.19 Score=48.22 Aligned_cols=46 Identities=15% Similarity=-0.037 Sum_probs=37.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC----CeEEEeeCCHHHHHHHHHHHhh
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG----YVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G----~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
.++.+|||+.++-|.=+-.||... ..|+++|.|..=+...+..+++
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 457899999999999888888874 4489999999877766664444
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.041 Score=49.48 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=49.5
Q ss_pred eEEeccccccc--cCCCceeEEEec--ccccC----c---------chHHHHHHHHHHhccCCeEEEEeccccccccCCC
Q psy3185 209 SMAAGDFLQVY--VHPNKWDCVATC--FFIDC----A---------NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML 271 (298)
Q Consensus 209 ~~~~gDf~~~~--~~~~~fD~V~t~--ffidt----a---------~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~ 271 (298)
.+..||..++. .++++.|+|+|- |++.. . +=...++++++|+|||||.++.+.. |+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~--~~~---- 76 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG--WNR---- 76 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec--ccc----
Confidence 35677877763 367889988885 55420 0 1134688999999999999886432 111
Q ss_pred CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+..++++.||.+..
T Consensus 77 --------~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 77 --------VDRFMAAWKNAGFSVVG 93 (227)
T ss_pred --------HHHHHHHHHHCCCEEee
Confidence 34567778899998753
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.011 Score=46.04 Aligned_cols=92 Identities=18% Similarity=0.118 Sum_probs=40.2
Q ss_pred EEecccCcHHHHHHHHc----C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 124 LVPGAGLGRLAFEIARR----G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 124 LdpGcG~Grla~ela~~----G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
|++|+..|+-+..+++. + ..++++|..+. ....+..+.+ .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~----------------------------~------ 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK----------------------------A------ 45 (106)
T ss_dssp --------------------------EEEESS-----------------------------------------G------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh----------------------------c------
Confidence 67899999988887753 2 37999999986 1111111100 0
Q ss_pred CCCCCCCCCeeEEecccccccc--CCCceeEEEeccccc---CcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFID---CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffid---ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.++.|++.+... ..++||.|+ || +.+.....++.+...|+|||+++
T Consensus 46 ----~~~~~~~~~~g~s~~~l~~~~~~~~dli~----iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 46 ----GLSDRVEFIQGDSPDFLPSLPDGPIDLIF----IDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ----GG-BTEEEEES-THHHHHHHHH--EEEEE----EES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----CCCCeEEEEEcCcHHHHHHcCCCCEEEEE----ECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 001468899999877643 235777653 55 34667889999999999999887
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.051 Score=51.14 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.||| +|.++..+|+. |. .|.++|.|..-+..++.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 46789999886 56677778875 87 59999999987776654
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.043 Score=54.66 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH------cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR------RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPW 175 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~------~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~ 175 (298)
.|...|..+.|..... ....|+++|+|-|-|+-..-+ +--++.++|-.+..+..-..+ |. .
T Consensus 351 Ai~~AL~Drvpd~~a~-~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~-~---------- 417 (649)
T KOG0822|consen 351 AILKALLDRVPDESAK-TTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NF-E---------- 417 (649)
T ss_pred HHHHHHHhhCcccccC-ceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-ch-h----------
Confidence 4888899888853222 256799999999988765432 235688999988766543321 00 0
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhcc
Q psy3185 176 VQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 176 ~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~Lk 252 (298)
.-...++++.+|++.+..+.++-|++||-. |=|.. ==.++|.-+.+.||
T Consensus 418 ---------------------------~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNE-LSPECLDG~q~fLk 469 (649)
T KOG0822|consen 418 ---------------------------CWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNE-LSPECLDGAQKFLK 469 (649)
T ss_pred ---------------------------hhcCeeEEEeccccccCCchhhccchHHHhhccccCcc-CCHHHHHHHHhhcC
Confidence 012578899999999975558999988742 33322 12589999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|.|+.|
T Consensus 470 pdgIsI 475 (649)
T KOG0822|consen 470 PDGISI 475 (649)
T ss_pred CCceEc
Confidence 999998
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.42 Score=44.97 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=42.3
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHH
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l 161 (298)
++++.+.+.. .++..++|-=||.|..+..|++. ...|+|+|.++.++..++..+
T Consensus 9 l~Evl~~L~~----~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 9 LDEVVEGLNI----KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred HHHHHHhcCc----CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3444444432 24668999999999999999976 367999999999999988754
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.11 Score=45.75 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=47.9
Q ss_pred CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC-----CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 223 NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML-----NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~-----~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.++|.+++.-+|++ .....+...+++.|||||++... -|-.+-. ......++..-+++..++.||++.-|
T Consensus 129 ~~~yhdmh~k~i~~-~~A~~vna~vf~~LKPGGv~~V~----dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 129 AQNYHDMHNKNIHP-ATAAKVNAAVFKALKPGGVYLVE----DHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred chhhhhhhccccCc-chHHHHHHHHHHhcCCCcEEEEE----eccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 34555555555553 34567889999999999999743 2322210 11234578899999999999999877
Q ss_pred C
Q psy3185 298 S 298 (298)
Q Consensus 298 ~ 298 (298)
|
T Consensus 204 S 204 (238)
T COG4798 204 S 204 (238)
T ss_pred e
Confidence 5
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.09 Score=48.97 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+||+.|||. |..+..+|+. |+ .+.+++.|..+...++.. . . . .+ +.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g----~-~-~v---i~------------------ 216 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G----A-D-ET---VN------------------ 216 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C----C-C-EE---Ec------------------
Confidence 467899988876 7888888865 88 799999998887654431 0 0 0 00 00
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.. . .. +..+....+.+|+|+.+..- ...++.+.+.|+++|.+|.+|.
T Consensus 217 -~~----~--~~-------~~~~~~~~~~vd~vld~~g~------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 217 -LA----R--DP-------LAAYAADKGDFDVVFEASGA------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -CC----c--hh-------hhhhhccCCCccEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 00 0 00 11111123458988765421 2457888999999999998763
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.41 Score=44.19 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred eEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
+|+|+-||.|.+...+.+.|++ |.++|+++..+...+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~ 40 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEA 40 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHH
Confidence 7999999999999999999998 7899999998876554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.074 Score=45.51 Aligned_cols=63 Identities=24% Similarity=0.450 Sum_probs=47.3
Q ss_pred CCCceeEEEe--cccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 221 HPNKWDCVAT--CFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 221 ~~~~fD~V~t--~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+..+||.|++ |.|+|-. -....++|+.+|+|.|.-+.+.| ...-|.+.+...+...||.+.-+
T Consensus 100 eq~tFDiIlaADClFfdE~--h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEH--HESLVDTIKSLLRPSGRALLFSP------------RRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred hhCcccEEEeccchhHHHH--HHHHHHHHHHHhCcccceeEecC------------cccchHHHHHHHHHhceeEEEec
Confidence 3469998876 4566643 35789999999999998765555 33446888888999999998654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.055 Score=49.80 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=75.5
Q ss_pred CeEEEecccCc--HHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 121 VNILVPGAGLG--RLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 121 ~~VLdpGcG~G--rla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
...||+|||+= ...+|+|+. ...|.-+|..+-.+.-++.+|...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------------------------------- 118 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------------------------------- 118 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------------------------------
Confidence 46999999964 478999886 578999999999998888766421
Q ss_pred CCCCCCCCCCCCeeEEecccccccc--C----CCcee-----EEEe---cccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV--H----PNKWD-----CVAT---CFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~--~----~~~fD-----~V~t---~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+.+...++.+|+.+.-. . .+-+| +|+. ..|+...++....+.++...|-||.+++...
T Consensus 119 --------~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 119 --------PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp --------TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred --------CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 01236788888876421 1 14455 3333 3456566778999999999999999997321
Q ss_pred ------cc-------cccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 262 ------PL-------LYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 262 ------Pl-------~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|. .|.. ...+...-|.+||.+++. ||+++
T Consensus 191 ~t~d~~p~~~~~~~~~~~~---~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ---AGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH---CCS----B-HHHHHHCCT--TSEE-
T ss_pred cCCCCCHHHHHHHHHHHHc---CCCCceecCHHHHHHHcC--CCccC
Confidence 10 0111 122344458999999885 88875
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.063 Score=50.03 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+||++|-|-|....+.+++- -++.-+|+....+..++.-+. .
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p---------------------------------~ 167 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLP---------------------------------T 167 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhH---------------------------------H
Confidence 46799999999999999999882 347777887777766654322 1
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEecc--cccCcchH--HHHHHHHHHhccCCeEEEEecc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCF--FIDCANNI--VSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~f--fidta~n~--~~yl~~I~~~LkpGG~~In~gP 262 (298)
+... -...++.+..||-..++. ..++||+|++-- -+-.+.++ ..|+..+.+.|||||+.+..|-
T Consensus 168 la~g--y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 168 LACG--YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred Hhcc--cCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 1110 012478888898655543 368999988631 22233343 4699999999999999987664
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.0071 Score=48.18 Aligned_cols=72 Identities=24% Similarity=0.435 Sum_probs=40.2
Q ss_pred ceeEEEecc---ccc--C-cchHHHHHHHHHHhccCCeEEEEeccccc---cccCC------CCCCccCCCHHHHHHHHH
Q psy3185 224 KWDCVATCF---FID--C-ANNIVSFIETIFNILKPGGIWINLGPLLY---HYSNM------LNEDSIEPSYEVVKQVIQ 288 (298)
Q Consensus 224 ~fD~V~t~f---fid--t-a~n~~~yl~~I~~~LkpGG~~In~gPl~y---~~~~~------~~~~~~~ls~eEl~~~~~ 288 (298)
+||+|++.- .|| + -+-+..+++.|+.+|+|||++| +-|=-| .-+-. .+-..+++.++++..++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 488886543 233 2 2348899999999999999998 444322 21100 011356788888999888
Q ss_pred h--CCCEEEE
Q psy3185 289 G--LGFVYEV 296 (298)
Q Consensus 289 ~--~GF~i~~ 296 (298)
. .||....
T Consensus 80 ~~evGF~~~e 89 (110)
T PF06859_consen 80 EPEVGFSSVE 89 (110)
T ss_dssp STTT---EEE
T ss_pred hcccceEEEE
Confidence 7 6998653
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.9 Score=40.71 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=81.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.++.|+||-=|+|+..|.+.+- .+++.|.++.-+..|.....+. +
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~------~-------------------------- 64 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN------N-------------------------- 64 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc------C--------------------------
Confidence 45699999999999999999974 4999999999998876533221 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
+ ...++...||-......+..+|+|+-+=+ -..-+.+.|++-.+-|+.==.+| +-|.
T Consensus 65 ----l--~~~i~vr~~dgl~~l~~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~rlI-LQPn-------------- 121 (226)
T COG2384 65 ----L--SERIDVRLGDGLAVLELEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVERLI-LQPN-------------- 121 (226)
T ss_pred ----C--cceEEEeccCCccccCccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcceEE-ECCC--------------
Confidence 0 13566667776555445568997665421 12224455555555554212333 2231
Q ss_pred CCHHHHHHHHHhCCCEEEEeC
Q psy3185 278 PSYEVVKQVIQGLGFVYEVES 298 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~~~ 298 (298)
-...+|++++.+.+|+|..|.
T Consensus 122 ~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 122 IHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CCHHHHHHHHHhCCceeeeee
Confidence 127899999999999998874
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.21 Score=47.92 Aligned_cols=41 Identities=20% Similarity=0.032 Sum_probs=34.8
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|||. |.++..+|+. |. .|.+++.+..++..++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 467899999998 9999999876 76 59999999999887664
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.25 Score=45.58 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+||+.||| +|..+.++|+. |..|++++-|..+...++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 46789998887 58999999875 899999999998876654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.061 Score=48.97 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=48.3
Q ss_pred hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 93 SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 93 ~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
-.||-..++.+.+++...+| ...+|||+|||+==++...... +..+.|.|++..|+...+..++.
T Consensus 85 T~ERl~~Ld~fY~~if~~~~------~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 85 TRERLPNLDEFYDEIFGRIP------PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp HHCCGGGHHHHHHHHCCCS---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHhcCC------CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 34777777777777776655 3679999999999999987655 46899999999999887776553
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.32 Score=47.64 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+|+++|||. |+.+..+++ .|..|+.+|.++.-+..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 578999999996 655555554 4889999999987655543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.076 Score=51.22 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHH-cCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIAR-RGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~-~G~~v~g~D~S~~Ml 154 (298)
++.+|+++|+| .|+.+...++ .|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45689999998 6777777665 489999999987643
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.051 Score=53.13 Aligned_cols=46 Identities=26% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhh
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~ 163 (298)
..+..|||+|.|||-|+.-.++.|.+ |+|+|.=..|..+|+.|..+
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc
Confidence 45677999999999999999999875 99999999999999998765
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.21 Score=51.67 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=51.0
Q ss_pred CCeeEEeccccccccC-CCceeEEEec-ccccCcchH----HHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCC
Q psy3185 206 CDFSMAAGDFLQVYVH-PNKWDCVATC-FFIDCANNI----VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPS 279 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~~-~~~fD~V~t~-ffidta~n~----~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls 279 (298)
..+.+..||+.+.... ...+|++.-= |. .+.|. .+++..|.++++|||+++.+. +
T Consensus 147 ~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs--P~~np~~W~~~~~~~l~~~~~~~~~~~t~t-----------------~ 207 (662)
T PRK01747 147 VTLDLWFGDANELLPQLDARADAWFLDGFA--PAKNPDMWSPNLFNALARLARPGATLATFT-----------------S 207 (662)
T ss_pred EEEEEEecCHHHHHHhccccccEEEeCCCC--CccChhhccHHHHHHHHHHhCCCCEEEEee-----------------h
Confidence 3677899999876532 2457776431 21 33333 479999999999999998531 2
Q ss_pred HHHHHHHHHhCCCEEEE
Q psy3185 280 YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 280 ~eEl~~~~~~~GF~i~~ 296 (298)
..-+++-+..+||++.+
T Consensus 208 a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 208 AGFVRRGLQEAGFTVRK 224 (662)
T ss_pred HHHHHHHHHHcCCeeee
Confidence 56789999999999875
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.36 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=16.6
Q ss_pred CCCCeEEEecccCcHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR 139 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~ 139 (298)
.+..+|+|+||..|..+..+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 4578999999999999987654
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.32 Score=42.88 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=34.5
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~ 158 (298)
-.+.+|||.|+|.|-.+..-|+.|.. |.+.|+.+....+.+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~ 119 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIR 119 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhh
Confidence 35789999999999999999999975 999999987665544
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.2 Score=50.41 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=67.2
Q ss_pred CCCeEEEecccCc-HHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLG-RLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~G-rla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||.= ..+..+++. |..|+++|.+..-+..++.. .. .+ +.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga-----~~---------------------v~v~- 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GA-----EF---------------------LELD- 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC-----eE---------------------Eecc-
Confidence 4679999999864 666666654 88999999999866655431 10 00 0111
Q ss_pred CCCCCCCCCCCeeEEeccccc-----cccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-----VYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-----~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.....-...+--.....+|.+ +...-..+|+|+++-.|...+.+.-..+++-+.+|||++.|.+
T Consensus 215 ~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 215 FKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 000000000001111223321 1111256999999998887666555678888999999999864
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.59 Score=43.38 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=67.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||..||-|.=+..+|... ..++++|.|..-+...+..+++..
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g------------------------------ 134 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG------------------------------ 134 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------------------------------
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC------------------------------
Confidence 46789999999999999998873 479999999998776655433211
Q ss_pred CCCCCCCCCCCCeeEEecccccccc--CCCceeEEE-----ecc-cccCc---------ch-------HHHHHHHHHHhc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVA-----TCF-FIDCA---------NN-------IVSFIETIFNIL 251 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~-----t~f-fidta---------~n-------~~~yl~~I~~~L 251 (298)
..++.....|...... ....||.|. |.. .+..- .+ ..+.|+...+.+
T Consensus 135 ---------~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~ 205 (283)
T PF01189_consen 135 ---------VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLL 205 (283)
T ss_dssp ----------SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCE
T ss_pred ---------CceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhh
Confidence 1355566677766632 234588764 221 22211 11 225788888999
Q ss_pred ----cCCeEEE
Q psy3185 252 ----KPGGIWI 258 (298)
Q Consensus 252 ----kpGG~~I 258 (298)
||||++|
T Consensus 206 ~~~~k~gG~lv 216 (283)
T PF01189_consen 206 NIDFKPGGRLV 216 (283)
T ss_dssp HHHBEEEEEEE
T ss_pred cccccCCCeEE
Confidence 9999987
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.3 Score=46.06 Aligned_cols=39 Identities=26% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeC---CHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEF---SLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~---S~~Ml~~a 157 (298)
++.+||+.|||. |.++..+|+. |..|++++- |+.=+..+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV 215 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 467899999874 7788888875 889999886 55544433
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.6 Score=39.39 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=37.1
Q ss_pred ceeEEEecccccCcchHHHHHHH--HHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 224 KWDCVATCFFIDCANNIVSFIET--IFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~--I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.-|+|++|. -....+.+.+.. +...|++|.++|+.+-..... ..++.+.+++.|...++
T Consensus 57 ~~dvvi~~v--~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~------------~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 57 QADVVILCV--PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPET------------SRELAERLAAKGVRYVD 117 (163)
T ss_dssp HBSEEEE-S--SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH------------HHHHHHHHHHTTEEEEE
T ss_pred cccceEeec--ccchhhhhhhhhhHHhhccccceEEEecCCcchhh------------hhhhhhhhhhccceeee
Confidence 348888875 233456677777 889999999999865432222 46677777777776654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.12 Score=42.12 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=50.2
Q ss_pred CCeeEEecccccccc-CCCceeEEEec-ccccCcchH--HHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHH
Q psy3185 206 CDFSMAAGDFLQVYV-HPNKWDCVATC-FFIDCANNI--VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYE 281 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~-~~~~fD~V~t~-ffidta~n~--~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~e 281 (298)
..+.+..||+.+... -...+|+|.-- |.=...+++ .++++.|+++++|||++.. |.. ..
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys~------------a~ 93 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT-----YSS------------AG 93 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S--------------BH
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE-----eec------------hH
Confidence 468899999987654 24789987643 322222222 5899999999999999985 322 34
Q ss_pred HHHHHHHhCCCEEEE
Q psy3185 282 VVKQVIQGLGFVYEV 296 (298)
Q Consensus 282 El~~~~~~~GF~i~~ 296 (298)
-+++.+.++||++.+
T Consensus 94 ~Vr~~L~~aGF~v~~ 108 (124)
T PF05430_consen 94 AVRRALQQAGFEVEK 108 (124)
T ss_dssp HHHHHHHHCTEEEEE
T ss_pred HHHHHHHHcCCEEEE
Confidence 589999999999975
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.54 Score=47.07 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhccCChHHHhhhhH--HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C-----CeEEEee
Q psy3185 77 VQTTLKQFVRDWSEEGSEERKTCYE--PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G-----YVCQGNE 148 (298)
Q Consensus 77 v~~~l~~~~RdWs~~g~~ER~~~~~--~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G-----~~v~g~D 148 (298)
+-.+.--+.+.|..+...+--+-|- .|.+.+.+.+.+. ...+|.||-||+|.+....++. + ...+|.|
T Consensus 146 ~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~----~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE 221 (489)
T COG0286 146 FGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPE----PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQE 221 (489)
T ss_pred hhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCC----CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEe
Confidence 3344444555555433222111111 2555566555432 2349999999999987766543 1 3489999
Q ss_pred CCHHHHHHHHH
Q psy3185 149 FSLFMLFASNF 159 (298)
Q Consensus 149 ~S~~Ml~~a~~ 159 (298)
....++..++.
T Consensus 222 ~~~~t~~l~~m 232 (489)
T COG0286 222 INDTTYRLAKM 232 (489)
T ss_pred CCHHHHHHHHH
Confidence 99999877654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.18 Score=44.73 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=45.6
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLF 155 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~ 155 (298)
=+|.|.+.... .-..|+.-|.. +|- +++.+||=+|+-+|..+-.++.- | ..++|+|+|+.|..
T Consensus 50 eYR~Wnp~RSK----LaAaIl~Gl~~-~pi----~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r 114 (231)
T COG1889 50 EYREWNPRRSK----LAAAILKGLKN-FPI----KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR 114 (231)
T ss_pred ceeeeCcchhH----HHHHHHcCccc-CCc----CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH
Confidence 48889875422 22235555542 342 46789999999999999999886 5 45999999999864
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.12 Score=43.62 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+.+|+|+|-||+...-|+.| +..+|+|+.+-.+..++.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 56899999999999999999999 789999999998887765
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.46 Score=41.95 Aligned_cols=40 Identities=30% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+|. |..+..+++. |..|.+++.+......++
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 467999999994 8888888765 889999999987665443
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG2872|consensus | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.4 Score=41.07 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=55.0
Q ss_pred HHHHHhhhccCChHHHh-----hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 81 LKQFVRDWSEEGSEERK-----TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 81 l~~~~RdWs~~g~~ER~-----~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+-|+...|..+-.+|-- +-...|.+++++.+|.. .....-+....-|.|.+.-+|++.||+|.|.||+-.|.+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~--~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~e 286 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPEL--GLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAE 286 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhh--cCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHH
Confidence 34566677765555432 22234666777777632 233456888899999999999999999999999999988
Q ss_pred HHHH
Q psy3185 156 ASNF 159 (298)
Q Consensus 156 ~a~~ 159 (298)
+-+-
T Consensus 287 ar~~ 290 (359)
T KOG2872|consen 287 ARRR 290 (359)
T ss_pred HHHh
Confidence 6543
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.51 Score=44.38 Aligned_cols=157 Identities=16% Similarity=0.274 Sum_probs=85.6
Q ss_pred HHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCC---------CCCCCeEEEecccCcHHHHHHHHcC---------
Q psy3185 80 TLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETI---------NPKDVNILVPGAGLGRLAFEIARRG--------- 141 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~---------~~~~~~VLdpGcG~Grla~ela~~G--------- 141 (298)
-|.-++-.||+ -|..||.-|...|.++...... ..+..+||++|-|.|--...||..-
T Consensus 42 ~L~AYA~RWSP----sRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s 117 (315)
T PF11312_consen 42 KLEAYAARWSP----SRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLS 117 (315)
T ss_pred hhhhheeccCH----HHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCC
Confidence 44455666776 5788898888887776532211 2234799999999987655555422
Q ss_pred -------------CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCe
Q psy3185 142 -------------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDF 208 (298)
Q Consensus 142 -------------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~ 208 (298)
.+++++|+..=--...+- +.+ .+--|=+..+.+ ....|.+. +...++
T Consensus 118 ~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L--~~~-----i~s~p~~sk~a~---------~~~~~~~~----~~~~~~ 177 (315)
T PF11312_consen 118 KSPSGVSLSSPPSLSITLVDIADWSSVVDRL--TTT-----ITSPPPLSKYAS---------AANWPLIE----PDRFNV 177 (315)
T ss_pred cccccccccCCCcceEEEEEecChHHHHHHH--HHh-----ccCCCCcccccc---------ccccccCC----ccceee
Confidence 367777765432222211 111 010111111100 00011222 223578
Q ss_pred eEEeccccccccCC-------CceeEEEeccccc-----CcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 209 SMAAGDFLQVYVHP-------NKWDCVATCFFID-----CANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 209 ~~~~gDf~~~~~~~-------~~fD~V~t~ffid-----ta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.|.+.|......++ .+.+.|...|-+. ....=..+|..+...++||-+++.+
T Consensus 178 ~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 178 SFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred eEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 89999988875422 1344444334232 2223346899999999999888643
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.6 Score=43.15 Aligned_cols=39 Identities=28% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.||| .|..+..+|+. |..|.+++-|..++...
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA 202 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46789999997 89998888876 99999999999877654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.65 Score=42.74 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=30.7
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+|..+|+|. |.++..|++.|++|.+.|.++..+..+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~ 40 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI 40 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 688999986 6688888889999999999988765543
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.2 Score=37.02 Aligned_cols=126 Identities=16% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCCeEEEecccC-cHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+.+||++|=+= -.+|..|....-+|+.+|+...++..-+....+.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~--------------------------------- 90 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE--------------------------------- 90 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH---------------------------------
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc---------------------------------
Confidence 467999999542 2345555555678999999999998776643220
Q ss_pred CCCCCCCCCCeeEEeccccccccCC--CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHP--NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~--~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
+-++.....|+..-.++. ++||+++|-= -.|.+-+.-++.+-...||.-|..+- +++. .
T Consensus 91 -------gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-PyT~~G~~LFlsRgi~~Lk~~g~~gy-----~~~~------~ 151 (243)
T PF01861_consen 91 -------GLPIEAVHYDLRDPLPEELRGKFDVFFTDP-PYTPEGLKLFLSRGIEALKGEGCAGY-----FGFT------H 151 (243)
T ss_dssp -------T--EEEE---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEE-----EEE-------T
T ss_pred -------CCceEEEEecccccCCHHHhcCCCEEEeCC-CCCHHHHHHHHHHHHHHhCCCCceEE-----EEEe------c
Confidence 013566677776654443 9999988731 11667788899999999996553221 2222 1
Q ss_pred cCCC---HHHHHHHHHhCCCEEEE
Q psy3185 276 IEPS---YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls---~eEl~~~~~~~GF~i~~ 296 (298)
.+-| +-++.+.+...||.|..
T Consensus 152 ~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 152 KEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp TT--HHHHHHHHHHHHTS--EEEE
T ss_pred CcCcHHHHHHHHHHHHHCCcCHHH
Confidence 1223 34788899999998864
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.1 Score=41.29 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=32.6
Q ss_pred eEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
+++|+=||.|.+..-+.+.|++ |.|+|+++......+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~ 40 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKA 40 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhh
Confidence 7899999999999999999997 7899999997766554
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.3 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+++.|.+.+. .++..||||=||+|..+....+.|-...|+|+++.....|+
T Consensus 180 l~~~lI~~~t-----~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKAST-----NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHhhh-----ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 5555555543 24789999999999999999999999999999999888775
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.51 Score=44.67 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ |.|.++..+|+. |..|.+++-|..-+..+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 5679999998 589999999976 89999999988766544
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.63 Score=43.84 Aligned_cols=40 Identities=15% Similarity=-0.137 Sum_probs=28.5
Q ss_pred CCCeEEEecccC-cHHHHHHHHc--C-CeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR--G-YVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~--G-~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|||. |.++..+|++ | ..|+++|.|+.-+..++
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 467999999864 4455666763 4 57999999987655543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.17 Score=50.40 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~ 151 (298)
+......+.|..+++||.... .+.-+||+-||||-++..+|+.--.|.|+|+|+
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~--------------------------~~k~llDv~CGTG~iglala~~~~~ViGvEi~~ 415 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLP--------------------------ADKTLLDVCCGTGTIGLALARGVKRVIGVEISP 415 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCC--------------------------CCcEEEEEeecCCceehhhhccccceeeeecCh
Confidence 334566777888888887643 246899999999999999999988999999999
Q ss_pred HHHHHHHH
Q psy3185 152 FMLFASNF 159 (298)
Q Consensus 152 ~Ml~~a~~ 159 (298)
..+.-|+.
T Consensus 416 ~aV~dA~~ 423 (534)
T KOG2187|consen 416 DAVEDAEK 423 (534)
T ss_pred hhcchhhh
Confidence 98887765
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.22 Score=39.67 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=55.4
Q ss_pred cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCC
Q psy3185 129 GLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCD 207 (298)
Q Consensus 129 G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~ 207 (298)
|.|.++..+|+. |..|.++|.|..=+..++.. ... .++.. . ..+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~--Ga~--------~~~~~-------------------~------~~~ 45 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL--GAD--------HVIDY-------------------S------DDD 45 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--TES--------EEEET-------------------T------TSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh--ccc--------ccccc-------------------c------ccc
Confidence 679999999976 98999999999877666541 000 00000 0 001
Q ss_pred eeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 208 FSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 208 ~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
......++ .....+|+|+-|- .+ ...++...++|+|||.++.+|-
T Consensus 46 ---~~~~i~~~-~~~~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 46 ---FVEQIREL-TGGRGVDVVIDCV-----GS-GDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp ---HHHHHHHH-TTTSSEEEEEESS-----SS-HHHHHHHHHHEEEEEEEEEESS
T ss_pred ---cccccccc-cccccceEEEEec-----Cc-HHHHHHHHHHhccCCEEEEEEc
Confidence 00001111 1235799988653 22 4688899999999999998763
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.5 Score=42.89 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~M 153 (298)
.+.+|+++|+|. |+.....++ .|.+|+++|.++.-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r 230 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIR 230 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhh
Confidence 477999999986 554444444 48899999998864
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.37 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.023 Sum_probs=38.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFI 160 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~ 160 (298)
-.+.+|+|+|++.|--|..++-+|.. |.++|.++.+....+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH
Confidence 35779999999999999999999985 99999999998777663
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.22 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCceeEEEeccccc---CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 222 PNKWDCVATCFFID---CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 222 ~~~fD~V~t~ffid---ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+.+||.|-+...+. .--++...+-+|-|+|+|||..|.
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 58999887654322 234588899999999999999874
|
; GO: 0008168 methyltransferase activity |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.055 Score=45.95 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=51.4
Q ss_pred ccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEecc-cc-----cccc---CCCC---CCc--cCCCH
Q psy3185 217 QVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGP-LL-----YHYS---NMLN---EDS--IEPSY 280 (298)
Q Consensus 217 ~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gP-l~-----y~~~---~~~~---~~~--~~ls~ 280 (298)
+..+.+++.|+|....++. |...-..+++..++.|||||++-..-| +. |... +.++ .|. +-.+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~ 119 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTM 119 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHH
Confidence 4446789999999888877 456677899999999999999865555 32 2210 1111 111 11356
Q ss_pred HHHHHHHHhCCCEE
Q psy3185 281 EVVKQVIQGLGFVY 294 (298)
Q Consensus 281 eEl~~~~~~~GF~i 294 (298)
.++..++...||+.
T Consensus 120 r~m~n~~m~~~~~~ 133 (185)
T COG4627 120 RMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHhhhhee
Confidence 67777777777764
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.92 Score=42.16 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+|. |..+..+|+. |+.|+++.-|.......
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFA 199 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHH
Confidence 466899988874 8888888876 99999998888876544
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.6 Score=40.97 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=31.2
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.||| .|.++..+|+. |..|.+++.|..=+..++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 46799999975 56677777765 8889999999876655543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.9 Score=38.83 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.6
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-.+|+|. +.++..|++.|++|.+.|.++.-...
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~ 38 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKA 38 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578888876 44777788889999999999875543
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.1 Score=42.80 Aligned_cols=40 Identities=30% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+.+|++.|||. |-++..+|+. |. .|.++|.++.=+..|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34899999996 7777777776 64 59999999999988876
|
|
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.76 Score=44.41 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHh
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
-..|.|+|+|-|.|+..|+-. |..|.|||-|...-+.|+.+-.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLdk 197 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLDK 197 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHHH
Confidence 358999999999999999855 8899999999887777776543
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.6 Score=40.36 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|..+..+|+. |.. |.+++-|......+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA 200 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 46789998876 57888888876 777 89999998876654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.2 Score=41.60 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
+++.+||+.|+ |.|.++..+|+. |..|.+..-|..-...+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 35789999996 789999999976 99999998887755544
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.4 Score=39.55 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|||. |..+..+|+. |.. |.+++-+...+..++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE 139 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH
Confidence 3567899998876 7787888875 888 999999988766544
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.1 Score=40.35 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+++.+.+.+. .++..||||=||+|..+..-.+.|-.+.|+|+++.....+...+.
T Consensus 152 l~~~~i~~~s-----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 152 SLQPLIESFT-----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHHhC-----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 4455544443 246799999999999999999999999999999999888876554
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.1 Score=42.24 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.||| .|.++..+|+. |.. |.++|-+..-+..++.
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 356799999885 36677778875 875 9999999887666543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.15 Score=45.25 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~M 153 (298)
+...+.|+|||-|.|..+|+.+.-+ +.|.|+-...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KV 96 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKV 96 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHH
Confidence 3578999999999999999998654 8898886553
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.87 E-value=4.2 Score=37.79 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=27.0
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|-.+|+|. ..++..|++.|++|++.|.++.-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~ 37 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE 37 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 688888885 3477778888999999999986543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.5 Score=43.78 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~M 153 (298)
.+.+|+++|+| .++..+|+ .|..|.++|.++.-
T Consensus 253 aGKtVvViGyG--~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYG--DVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 46799999998 34444433 48899999998763
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.1 Score=41.61 Aligned_cols=37 Identities=30% Similarity=0.138 Sum_probs=30.5
Q ss_pred CeEEEecc--cCcHHHHHHHHc-CC-eEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGA--GLGRLAFEIARR-GY-VCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGc--G~Grla~ela~~-G~-~v~g~D~S~~Ml~~a 157 (298)
.+||+.|+ |+|..+..+|+. |. .|.+++-|......+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~ 196 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLL 196 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 79999986 789999999876 88 799999988765543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.3 Score=40.63 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=32.0
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.| .|+|.++..+|+. |..|.+++-|..-...++
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~ 185 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK 185 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 467999998 4789999999876 889999998887555443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.6 Score=39.91 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
..+++|+=||.|.+..-+...||+ +.++|+.+..+...+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~ 43 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKA 43 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHH
Confidence 568999999999999999999998 7799999998876554
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.2 Score=41.30 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=30.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| +|..+..+|+. |. .|.+++-+......++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 46789998876 57888888876 75 7888888887765544
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.1 Score=41.97 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=29.1
Q ss_pred CeEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|-++|.|... +|..|++.|++|+|+|.++.-+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 579999999654 555578889999999999986654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=3 Score=38.45 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=28.9
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.+|-++|+|. +.++..+++.|++|.+.|.+..-+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~ 39 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVA 39 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH
Confidence 3789999996 4578889999999999999987544
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.9 Score=39.90 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=32.1
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ |.|.++..+|+. |..|.+++-|..-...++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5679999994 689999999976 889999998887655443
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.5 Score=41.38 Aligned_cols=41 Identities=12% Similarity=-0.159 Sum_probs=32.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..++|-=-|.|..+..+.++ +..|.|+|-.+.++..++.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKE 62 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHC
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHH
Confidence 4679999999999999999876 5689999999999987764
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.4 Score=44.14 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhhhccCChHHH--hhhhHHHHHHH-----HhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----C-
Q psy3185 74 LEKVQTTLKQFVRDWSEEGSEER--KTCYEPIISEI-----LARFPPETINPKDVNILVPGAGLGRLAFEIARR----G- 141 (298)
Q Consensus 74 ~~~v~~~l~~~~RdWs~~g~~ER--~~~~~~i~~~l-----~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G- 141 (298)
.++-.+++.+..+||-..++... ++ .-+.. ....|....+.....|+++|||-|-|.-..-+. |
T Consensus 652 YdqYE~AI~kAL~Dw~~~~~~~~~~~~----ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~gv 727 (1072)
T PTZ00357 652 YRQYREAVFHYVRDWYAAGAEQQHAHQ----NSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGV 727 (1072)
T ss_pred HHHHHHHHHHHHHHhhhcccccccccc----ccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcCC
Confidence 45667888899999976443210 00 00010 111222111123357999999999987664332 4
Q ss_pred -CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc
Q psy3185 142 -YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV 220 (298)
Q Consensus 142 -~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~ 220 (298)
+.|.++|-++..+...... .. .... | .+. + ...+..+.++.+|..++..
T Consensus 728 kVrIyAVEKNPpAA~~tllr--~~-N~ee-----W----~n~-------------~-----~~~G~~VtII~sDMR~W~~ 777 (1072)
T PTZ00357 728 RLRIFAIEKNLPAAAFTRMR--WA-NDPE-----W----TQL-------------A-----YTFGHTLEVIVADGRTIAT 777 (1072)
T ss_pred cEEEEEEecCcchHHHHHHH--Hh-cccc-----c----ccc-------------c-----ccCCCeEEEEeCccccccc
Confidence 5799999995522211111 10 0001 1 000 0 0012467888888888743
Q ss_pred C-----------CCceeEEEecc---cccCcchHHHHHHHHHHhccC----CeE
Q psy3185 221 H-----------PNKWDCVATCF---FIDCANNIVSFIETIFNILKP----GGI 256 (298)
Q Consensus 221 ~-----------~~~fD~V~t~f---fidta~n~~~yl~~I~~~Lkp----GG~ 256 (298)
+ -++.|+|||-. |=|.- ==.+.|.-+.+.||+ +|+
T Consensus 778 pe~~~s~~~P~~~gKaDIVVSELLGSFGDNE-LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 778 AAENGSLTLPADFGLCDLIVSELLGSLGDNE-LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccccceehHhhhccccccc-CCHHHHHHHHHhhhhhcccccc
Confidence 2 14799999842 33321 124788888888886 665
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=20 Score=34.47 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHhhhccC---ChHHHhhhhHHHHHHHHhh---CCCCCCCCCCCeEEEec-ccC--cHHHHHHHHcCC
Q psy3185 72 TDLEKVQTTLKQFVRDWSEE---GSEERKTCYEPIISEILAR---FPPETINPKDVNILVPG-AGL--GRLAFEIARRGY 142 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~---g~~ER~~~~~~i~~~l~~~---~p~~~~~~~~~~VLdpG-cG~--Grla~ela~~G~ 142 (298)
.|-.+..+.+..+ +.|+.+ ....-...|..|++.-... .......+...+|.++| .|+ |.++..|.+.|+
T Consensus 45 ~d~~Re~~vl~~~-~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~ 123 (374)
T PRK11199 45 YVPEREAAMLASR-RAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY 123 (374)
T ss_pred CChHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCC
Confidence 3445555555444 334442 2222344566666443221 11111122346899998 555 445666667799
Q ss_pred eEEEeeCCH
Q psy3185 143 VCQGNEFSL 151 (298)
Q Consensus 143 ~v~g~D~S~ 151 (298)
.|++.|.+.
T Consensus 124 ~V~~~d~~~ 132 (374)
T PRK11199 124 QVRILEQDD 132 (374)
T ss_pred eEEEeCCCc
Confidence 999999764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.62 Score=43.12 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.2
Q ss_pred CeeEEeccccccc--cCCCceeEEEe--cccccCc--------------chHHHHHHHHHHhccCCeEEEE
Q psy3185 207 DFSMAAGDFLQVY--VHPNKWDCVAT--CFFIDCA--------------NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 207 ~~~~~~gDf~~~~--~~~~~fD~V~t--~ffidta--------------~n~~~yl~~I~~~LkpGG~~In 259 (298)
+-.+..||..++. .+++++|+|+| -|++... .-+..++..+.++|||||.++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467889988753 25689999999 4765210 1134688999999999998864
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.8 Score=40.59 Aligned_cols=42 Identities=19% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|+| .|..+..+|+. |.. |.+++-+...+..++.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 346789998877 67777778876 884 9999999877665543
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.4 Score=41.81 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=30.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..++.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 46789999875 36677777765 88 59999999987766543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.27 E-value=2.2 Score=39.81 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
.++.+||+-|+|. |..+..+|+. |.. |.+++-|......+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~ 203 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA 203 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 3567888887765 7888888876 887 89998888766544
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.5 Score=40.51 Aligned_cols=55 Identities=16% Similarity=0.021 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+++.|.+.+. .++..||||=||+|..+..-.+.|-...|+|++++-...|...+.
T Consensus 197 L~erlI~~~S-----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILASS-----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 5566555543 357899999999999999999999999999999999988887664
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.8 Score=36.73 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=24.7
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
+.+||+.|++ .|+ ++..|++.|++|..++-+..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5689999963 333 55566777999999998865
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.1 Score=42.72 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFM 153 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~M 153 (298)
-.+.+|+++|+|. .+..+|+ .|..|+..|.++.-
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchh
Confidence 3578999999985 4444443 48899999888753
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.69 E-value=6.5 Score=36.48 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-.+|+|. +.++..|++.|+.|++.|-++.....
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~ 38 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDV 38 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 577787765 34666677789999999999875543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.42 E-value=2.8 Score=38.97 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=28.0
Q ss_pred CeEEEecccC--cHHHHHHHHcCC--eEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGY--VCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~--~v~g~D~S~~Ml~~a 157 (298)
.+|.++|+|. +.++..|++.|+ .|++.|.++.-+..+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a 47 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA 47 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH
Confidence 5899999887 346666777785 799999998755443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.20 E-value=3.7 Score=38.59 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=78.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++...+|-=-|.|..+..+-.++ ..++|+|-.+.++..|+.++..
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-------------------------------- 70 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-------------------------------- 70 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc--------------------------------
Confidence 46789999999999999998875 4699999999999999886531
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-----CCCceeEE-----EecccccCcchHHHHHHHHHHhccCCeE-EEEecccc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-----HPNKWDCV-----ATCFFIDCANNIVSFIETIFNILKPGGI-WINLGPLL 264 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-----~~~~fD~V-----~t~ffidta~n~~~yl~~I~~~LkpGG~-~In~gPl~ 264 (298)
...+++++.+.|.++.. .-+++|.| ||++-||.++. |. +-.-|||-
T Consensus 71 --------~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLGVSS~QLD~~eR---------------GFSf~~d~pLD 127 (314)
T COG0275 71 --------FDGRVTLVHGNFANLAEALKELGIGKVDGILLDLGVSSPQLDDAER---------------GFSFRKDGPLD 127 (314)
T ss_pred --------cCCcEEEEeCcHHHHHHHHHhcCCCceeEEEEeccCCccccCCCcC---------------CcccCCCCCcc
Confidence 12478889998877653 12567765 57777776642 22 12235553
Q ss_pred ccccCCCC----CCccCCCHHHHHHHHHhCC
Q psy3185 265 YHYSNMLN----EDSIEPSYEVVKQVIQGLG 291 (298)
Q Consensus 265 y~~~~~~~----~~~~~ls~eEl~~~~~~~G 291 (298)
-.-....+ +---.++.+||..++.++|
T Consensus 128 MRMd~~~~lsA~evvN~~~e~~L~~I~~~yG 158 (314)
T COG0275 128 MRMDQTQGLSAAEVVNTYSEEDLARIFKEYG 158 (314)
T ss_pred cCcCCCCCCCHHHHHhcCCHHHHHHHHHHhc
Confidence 22110000 0012377888888888777
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.69 E-value=2.5 Score=40.01 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.+.+|.++|-|. |..+-.+|-- |.+|+-.|+|..-|.....+.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------------------------------- 212 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------------------------------- 212 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----------------------------------
Confidence 467899999985 6677777754 8999999999876544333211
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.++...-.....+...-.+.|+|+..-.|--+..+.-..+++-+.+|||+++|.
T Consensus 213 ---------~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 213 ---------GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ---------ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 123333222222222236789999999898888888889999999999999974
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.65 E-value=2.2 Score=40.57 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~M 153 (298)
++.+||+.||| .|.++..+|+. |..|.+++.+..-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~ 219 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK 219 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 46789998885 56677777765 8889888887653
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.39 Score=44.52 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHH
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFML 154 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml 154 (298)
|--.+++.+.+.+ .....-.+.+|||+|||.|-........| ..|...|+|..-+
T Consensus 97 cS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 97 CSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 3344566666443 11222357899999999999999999999 6799999998866
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=31 Score=34.51 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=35.4
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
....+++|+=||.|.+..-+-..|++ |.++|+........+.
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~ 128 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKA 128 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHH
Confidence 34679999999999999999888997 6799999987776543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.1 Score=40.96 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCCeEEEecccC-cHHHHHH-HHcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEI-ARRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~el-a~~G~~v~g~D~S~~Ml 154 (298)
.+.+|+++|+|. |+..... ...|.+|+.+|.++.-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 467999999974 3322222 23488999999998644
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=87.37 E-value=2.1 Score=39.06 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=29.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCe--EEEeeCCHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYV--CQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~--v~g~D~S~~ 152 (298)
++.+||=+|++.|+..-.++.- |-+ |+|+|+|.-
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~r 192 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHR 192 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEeccc
Confidence 5789999999999999988886 544 999999975
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=2.9 Score=39.64 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
.+.+|..+|+|. |+ +|..++..|++|.+.|.+..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 456899999887 43 55556667999999998864
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=86.95 E-value=8.4 Score=36.20 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=31.3
Q ss_pred EEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 123 ILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 123 VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
|+|+=||.|.+..-+.+.|++ +.++|++.......+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~ 38 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEA 38 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHH
Confidence 588999999999999999998 5689999987776543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=86.94 E-value=23 Score=33.21 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+...+...+|....+-++..||.=|.|.| | +|.|+|++|..+.-.|....-...
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 21 LESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE 77 (300)
T ss_pred HHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH
Confidence 44445555554333456778999877655 5 789999999999999998775543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=15 Score=33.05 Aligned_cols=36 Identities=17% Similarity=-0.042 Sum_probs=27.5
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+..+|+-|++ .|+ ++..|++.|++|..++-+..-+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 46 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLK 46 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5578999975 454 66778888999999998876443
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.69 E-value=3 Score=37.91 Aligned_cols=41 Identities=29% Similarity=0.143 Sum_probs=30.2
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| .|.++..+|+. |.. |.++|.+..-+..++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 46789999885 56677777765 886 9999998876665543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=86.67 E-value=3.6 Score=38.25 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 223 NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
..+|+|+.+. .. ...++.+.+.|+++|.++++|.
T Consensus 234 ~~~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV-----GI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC-----CC-HHHHHHHHHhccCCcEEEEecc
Confidence 4588887554 11 2347888899999999998874
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.67 E-value=5.7 Score=36.97 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+-|+| +|..+..+|+. |.. |.+++-|..-...++
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~ 203 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK 203 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 46688886665 57777777765 886 888888876555443
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=86.64 E-value=9 Score=34.03 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=65.4
Q ss_pred CCeEEEecccCcHHHHHHHHc------CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
+..|++.|.=.|.=+...|.. ...|.|+|+...-... . . ..-+|
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~----a-----~e~hp------------------- 82 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--K----A-----IESHP------------------- 82 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-------G-----GGG---------------------
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--H----H-----Hhhcc-------------------
Confidence 469999999999888777653 2579999995431110 0 0 00011
Q ss_pred cCCCCCCCCCCCCCeeEEecccccccc------CCCcee-EEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWD-CVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD-~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
...+++|.+||-.+.-. .....+ ++|..-.=|+..++..-|+....+++||+++|...-...+
T Consensus 83 ----------~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 83 ----------MSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIED 152 (206)
T ss_dssp ------------TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred ----------ccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence 12478889998654321 011122 2222222245578999999999999999999854322222
Q ss_pred ccCC-CCCCccC---CCHHHHHHHHHhCC-CEEE
Q psy3185 267 YSNM-LNEDSIE---PSYEVVKQVIQGLG-FVYE 295 (298)
Q Consensus 267 ~~~~-~~~~~~~---ls~eEl~~~~~~~G-F~i~ 295 (298)
.... ....... -..+.+.+.+.+.. |++.
T Consensus 153 ~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 153 WPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp HHHS-------------HHHHHHHHHTTTTEEEE
T ss_pred cccccccccchhhhhHHHHHHHHHHHHCCCcEec
Confidence 1111 0001111 24778888888755 7765
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.3 Score=42.01 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CCeEEEeeCCHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~~v~g~D~S~~ 152 (298)
++.+|-.+|. |+|.+|..+|+. |++|+++|-|..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 5677877774 699999999987 999999999974
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.49 E-value=4.5 Score=42.17 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHH
Q psy3185 118 PKDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 118 ~~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~ 152 (298)
....+|..+|+|. |.++..|.+.|++|++.|-+..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~ 86 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH 86 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456899999876 5577777778999999998854
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=86.34 E-value=0.72 Score=44.05 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.++.-|+||=.|||.+...-|.-|.-|.|.|+.+.|+.+
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeec
Confidence 567889999999999999999999999999999999874
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.30 E-value=6 Score=36.68 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.1
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~ 151 (298)
++.+||+.|+ +.|..+..+|+. |..|.+++-+.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~ 212 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA 212 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence 4679999997 678888888875 88988887554
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=9.8 Score=33.09 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++ |.++.. +++.|+.|.+.+-+..-+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~ 42 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKL 42 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5689999985 444444 445699999999887644
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.25 E-value=3.4 Score=39.04 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=59.3
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.+.+||+.| .|.|.++..||+. |+.+.++--|..=...++. ... .+
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~---lGA---d~------------------------- 190 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE---LGA---DH------------------------- 190 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh---cCC---CE-------------------------
Confidence 478999999 5788999999987 7787787777754443322 100 00
Q ss_pred CCCCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
-+.+...||.+-.. ....||+|+-+- - -+++....+.|++||.++.+|.
T Consensus 191 -----------vi~y~~~~~~~~v~~~t~g~gvDvv~D~v-----G--~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 191 -----------VINYREEDFVEQVRELTGGKGVDVVLDTV-----G--GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred -----------EEcCCcccHHHHHHHHcCCCCceEEEECC-----C--HHHHHHHHHHhccCCEEEEEec
Confidence 11122233332211 224699987543 2 2567778889999999997664
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=7 Score=35.07 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|+ |.|+ ++..|+++|+.|.+++-+..-+
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~ 46 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKV 46 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 568999996 4444 4555667899999999887644
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.13 E-value=47 Score=34.73 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~ 152 (298)
.+.+|..+|+|. |.++..|.+.|++|.+.|-+..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 467999999775 4455566667999999999854
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.92 E-value=6.6 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.066 Sum_probs=24.5
Q ss_pred CCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|+ +|.++.. |+++|+.|.+++-+..-+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~ 45 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEAR 45 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 568999996 3444444 5567999999987766543
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.9 Score=38.80 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+|. |..+..+|+. |.. |.+++-|..+....
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 467899988766 8888888875 887 99999888766544
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.68 E-value=7.9 Score=35.51 Aligned_cols=33 Identities=18% Similarity=-0.091 Sum_probs=25.8
Q ss_pred eEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|+++|+|.-. +|..|++.|++|+.++- ..-+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~ 36 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAK 36 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHH
Confidence 78999999744 67778899999999987 44333
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.49 E-value=4.7 Score=36.88 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEecccC--cHHHHHHHHcCC--eEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGY--VCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~--~v~g~D~S~~Ml~~ 156 (298)
+|..+|+|. |.++..|++.|+ .|++.|.++.-+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~ 40 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKK 40 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 688899886 557777777786 79999999875443
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.45 E-value=3.6 Score=38.23 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+||+.||| .|..+..+|+. |.+|.+++-+..-+..++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 46789999864 45566666665 889999998877655543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.34 E-value=6.6 Score=37.04 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|.++..+|+. |.. |.+++-|......+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~ 228 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKA 228 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 45688888875 77788888865 887 99998888766544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.4 Score=39.99 Aligned_cols=56 Identities=25% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHHHhhC-CCCCCCCCCCeEEEecccCcHHHHHHHHc--C--------CeEEEeeCCHHHHHHHHHHHh
Q psy3185 102 PIISEILARF-PPETINPKDVNILVPGAGLGRLAFEIARR--G--------YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 102 ~i~~~l~~~~-p~~~~~~~~~~VLdpGcG~Grla~ela~~--G--------~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+++.++..- | ..+.+|+++|+|.|+|+..+.+. . .++.-+|.|+.|...-+..+.
T Consensus 5 ~~~~~~~~~~~p-----~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 5 WIAQMWEQLGRP-----SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHHCT-------SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred HHHHHHHHcCCC-----CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3555666542 3 23579999999999999998763 1 369999999999876665443
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=85.29 E-value=6.2 Score=36.08 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
+..+||++|+|+|-.+.-.|.. |..|.--|....+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN 123 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH
Confidence 3568999999999666666664 677888888777654
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.10 E-value=3.7 Score=38.44 Aligned_cols=40 Identities=23% Similarity=0.053 Sum_probs=29.3
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GY-VCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ ++|.++..+|+. |+ .|.+++-|......++
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4668888876 356677777765 88 7999998888766553
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.04 E-value=3.9 Score=38.25 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.||| +|.++..+|+. |.. |.+++-+..-+..++
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 46789999875 46666777765 886 789999888666543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=84.75 E-value=2 Score=36.84 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLF 155 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~ 155 (298)
-.+.+|..+|+ |+++..+|++ |.+|.+.|.+..--.
T Consensus 34 l~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 34 LRGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp STTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred cCCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChhh
Confidence 35789999976 5666666654 889999999987543
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.53 E-value=8.3 Score=34.61 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~M 153 (298)
+.+||+.||+ .|+ ++..|+++|++|.+++-+..-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~ 39 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK 39 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4589999963 333 334455679999999887653
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=84.45 E-value=7.8 Score=35.61 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=25.4
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-++|+|. ..++..|++.|++|++.|.++.-+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~ 37 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE 37 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHH
Confidence 366787766 23666677789999999999865443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=84.31 E-value=17 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++ .|+ ++..|+++|+.|..++.+....
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~ 55 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLG 55 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5679999953 333 4455666799999998876543
|
|
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=84.29 E-value=6.8 Score=35.04 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+ ++|..+..+|+. |..|..++-+. ...
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~ 182 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NAD 182 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHH
Confidence 4679999996 577777777765 88988887666 443
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=84.23 E-value=3.1 Score=38.68 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| .|.++..+|+. |.. |++++-+..-+..++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 46799998875 45566667764 888 999999887665554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.18 E-value=4.7 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.5
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|-.+|+|. +.++..|++.|++|++.|.+..-+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~ 38 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVD 38 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHH
Confidence 688888886 5577778888999999999987543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=84.04 E-value=4.3 Score=37.55 Aligned_cols=37 Identities=24% Similarity=0.127 Sum_probs=27.1
Q ss_pred CCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~ 156 (298)
+.+||+.||| .|.++..+|+. |.. |.++|.+...+..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~ 184 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDG 184 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHh
Confidence 5689999975 57777888875 886 6677887765543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.02 E-value=5.3 Score=38.43 Aligned_cols=43 Identities=26% Similarity=0.149 Sum_probs=33.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc----------CCeEEEeeCCHHHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----------GYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----------G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+..++++|+|.|.|+..+.+. ...+.-+|.|+.....=+..|
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 3578999999999999998764 246889999999766544443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=84.02 E-value=6.2 Score=38.28 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCeEEEecccCcHHHHHHHHc--C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+=||+|-=+...|.. | ..|++||+|+..+...+.-+. .| +
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~----~N---------------------------~ 98 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE----LN---------------------------G 98 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH----HC---------------------------T
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh----hc---------------------------c
Confidence 579999999999888888776 3 469999999998776554111 00 1
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+. . ..+.+...|...+.. ....||+|= ||.--....||+...+.+|.||++.
T Consensus 99 ~~-----~-~~~~v~~~DAn~ll~~~~~~fD~ID----lDPfGSp~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 99 LE-----D-ERIEVSNMDANVLLYSRQERFDVID----LDPFGSPAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp -S-----G-CCEEEEES-HHHHHCHSTT-EEEEE----E--SS--HHHHHHHHHHEEEEEEEE
T ss_pred cc-----C-ceEEEehhhHHHHhhhccccCCEEE----eCCCCCccHhHHHHHHHhhcCCEEE
Confidence 11 0 146677788776642 468899874 3555567789999999999999886
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=83.58 E-value=9.2 Score=34.55 Aligned_cols=39 Identities=28% Similarity=0.240 Sum_probs=30.7
Q ss_pred CCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
+.+||..|+ |+|..+..+|+. |..|.+++-+..-+..++
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 174 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR 174 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 679999988 688888888875 899999988876555443
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.55 E-value=7.7 Score=36.37 Aligned_cols=32 Identities=28% Similarity=0.171 Sum_probs=26.2
Q ss_pred CeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHH
Q psy3185 121 VNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 121 ~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~ 152 (298)
.+|.++|+|. | .+|..|++.|++|+.+|-+..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~ 36 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI 36 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH
Confidence 4799999994 3 577888899999999998653
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=83.47 E-value=4.7 Score=37.89 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 120 DVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
..++||+|+|..-+=--|+. .|+.++|.|+++.-+..|+....+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~ 148 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVER 148 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHh
Confidence 67999999999865333333 399999999999999999986654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=83.36 E-value=6.3 Score=34.77 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=23.9
Q ss_pred CCCeEEEecccCc--HHHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPGAGLG--RLAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGcG~G--rla~ela~~G~~v~g~D~S 150 (298)
.+.+||++|.|.= |-+..|.+.|..|+-++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4569999999853 4456677889998887654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.19 E-value=13 Score=32.65 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCC
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S 150 (298)
+.+||+.|+ |.|+ ++..|+++|++|.++.-+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999997 5555 555566789999887654
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.14 E-value=7.8 Score=36.01 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|| ++|..+..+|+. |..|.+++-+......++
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4678888877 456666666664 889999999988766543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=6.7 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ ++|..+..+|+. |..+..+.-|......+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 181 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC 181 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4678999884 689999998865 88877788888766554
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.03 E-value=6.8 Score=36.37 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCe--EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYV--CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~--v~g~D~S~~Ml~~a~~ 159 (298)
..+|+.+|.|. |.++..|...|+. ++|.|-|..-+..+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~ 46 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE 46 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh
Confidence 35899999886 5577777788986 5888888876666543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=82.96 E-value=11 Score=30.67 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 221 HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 221 ~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..+.||+|+-|- .+....+.++.+.+.+.|+..++.
T Consensus 64 ~~~~~D~viv~v---Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 64 DAGPYDLVIVAV---KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HHSTESEEEE-S---SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred ccCCCcEEEEEe---cccchHHHHHHHhhccCCCcEEEE
Confidence 357899776552 344567889999999999987774
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=82.89 E-value=2.2 Score=38.17 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
++..|.+.+|.. +..+++||=||+|.+++.+...+..|+.||+...-....+.++.
T Consensus 8 l~~~I~~~ip~~----~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKN----KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC----CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 678888888841 46799999999999999998899999999999998887774443
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.75 E-value=7.3 Score=36.53 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=25.8
Q ss_pred CCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~ 151 (298)
...+|..+|+|. |.++..+.+.|++|+++|.+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 457899999874 346666667799999999986
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.66 E-value=28 Score=30.73 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++.| + ++..|+++|++|..++-+..-+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 46 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL 46 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 568999997543 3 5566777899999998886544
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=14 Score=32.99 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCeEEEecc----cCcH-HHHHHHHcCCeEEEeeCC
Q psy3185 120 DVNILVPGA----GLGR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGc----G~Gr-la~ela~~G~~v~g~D~S 150 (298)
+..+|+.|+ |.|+ ++..|++.|++|...+-+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 568999997 5565 466677789998877544
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.53 E-value=27 Score=30.80 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=26.8
Q ss_pred CCCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.++|+.|++ .|+ ++..|+++|++|..++-+..-+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~ 47 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALA 47 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 35689999984 344 55556777999999988876543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=82.51 E-value=13 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=22.9
Q ss_pred ccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHH
Q psy3185 128 AGLGRLAFEIARR----GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 128 cG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~ 158 (298)
||.|+++..+++. +..|+.+|.++.-...++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~ 38 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR 38 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH
Confidence 5667888888764 568999999998655443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=82.40 E-value=8.3 Score=34.85 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+.|+ ++|..+..+|+. |+.|.++.-+..-...
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 182 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAAL 182 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4679999986 689999999876 9999999888865443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=17 Score=36.33 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=29.1
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
+|-++|.|. +.+|..|+++|++|++.|.++......
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l 40 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEF 40 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 678888885 347778888999999999999876543
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.19 E-value=9.6 Score=34.90 Aligned_cols=41 Identities=20% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| +|..+..+|+. |..|.+++-+......++.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 46789998763 45555556654 9999999999887766554
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=10 Score=35.34 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=27.5
Q ss_pred CCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~ 151 (298)
...+|+++|+|. |.+|..|++.|++|+.+.-+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 457899999995 558888999999999887765
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.35 E-value=8.2 Score=36.47 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+| +|.++..+|+. |..|++++-+.....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~ 218 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRE 218 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 46688888764 56677777765 888888888876543
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=81.33 E-value=13 Score=34.91 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-...+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 46688888764 45566667765 88 899999888755443
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.32 E-value=24 Score=31.20 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=24.4
Q ss_pred eEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+||+.|++. |+ ++..|+++|+.|.+++-+..-+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 39 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLA 39 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 689999753 33 45556677999999988876443
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=31 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=25.8
Q ss_pred CeEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 121 VNILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 121 ~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.++|+.|++. |+ ++..|+++|+.|.+.+-+...+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~ 39 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE 39 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4789999844 44 56667778999999998876443
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=17 Score=32.33 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=24.2
Q ss_pred CCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCH
Q psy3185 120 DVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~ 151 (298)
+..+|+-|++ .|+ ++..|++.|+.|...+-+.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 5689999974 555 6666778899999887664
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.73 E-value=12 Score=34.11 Aligned_cols=34 Identities=21% Similarity=0.016 Sum_probs=26.5
Q ss_pred eEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|+++|||.- .+|..|++.|++|+.++-+..-+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~ 37 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLD 37 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHH
Confidence 6999999853 367778888999999998765443
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=80.49 E-value=3.9 Score=35.93 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCC-eEEEeeCC
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGY-VCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~-~v~g~D~S 150 (298)
..+|+++|||. |. .+..||+.|. +++-+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 57999999984 43 7777888998 59999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=80.25 E-value=12 Score=31.29 Aligned_cols=100 Identities=20% Similarity=0.117 Sum_probs=57.4
Q ss_pred eEEEecccCcHH--HHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 122 NILVPGAGLGRL--AFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 122 ~VLdpGcG~Grl--a~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+|.++|+|.+.. |..|+.+|++|+-...+...+..-+. . .. ....+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~---~-~~-----------------------n~~~~~~~~- 52 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINE---T-RQ-----------------------NPKYLPGIK- 52 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHH---H-TS-----------------------ETTTSTTSB-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH---h-CC-----------------------CCCCCCCcc-
Confidence 688999999885 45588899999999999865544332 1 00 011122221
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
++ .++.+ .-|..+.. ..-|+|+.+- ...-+.++++.|...|+++=.+|++
T Consensus 53 --l~--~~i~~-t~dl~~a~---~~ad~Iiiav---Ps~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 53 --LP--ENIKA-TTDLEEAL---EDADIIIIAV---PSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp --EE--TTEEE-ESSHHHHH---TT-SEEEE-S----GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred --cC--ccccc-ccCHHHHh---CcccEEEecc---cHHHHHHHHHHHhhccCCCCEEEEe
Confidence 11 13332 34443332 3446554331 2334568899999999888777764
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=80.24 E-value=17 Score=30.36 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=17.3
Q ss_pred eEEEeeCCHHHHHHHHHHHhh
Q psy3185 143 VCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 143 ~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
+|.|.|+=...+...+..|..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~ 21 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE 21 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHh
Confidence 589999999999999987764
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=38 Score=30.28 Aligned_cols=37 Identities=24% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCCeEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|++. |+ ++..|++.|+.|..++-+...+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE 48 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 356899999753 33 55567778999999998876443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 298 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 8e-05 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 1e-04 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 1e-04 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 1e-04 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 2e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 8e-09
Identities = 47/333 (14%), Positives = 106/333 (31%), Gaps = 87/333 (26%)
Query: 5 RNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKL 64
R +Q + L +S L+ + + E+ L++K + +++P +
Sbjct: 273 RFKQVTDFLSAATTTHIS-----LDHHSMTLTPD-EVKSLLLKYLDCRPQDLPRE--VLT 324
Query: 65 ISPL------------PNSTD------LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISE 106
+P + D +K+ T ++ + E + ++
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDR---- 377
Query: 107 ILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFM-LFASNFILNKCR 165
L+ FP +I P L + F++ + + + + ++ K
Sbjct: 378 -LSVFP------PSAHI--PTILLSLIWFDVIKS-------DVMVVVNKLHKYSLVEKQP 421
Query: 166 EKNVYKIYPW---VQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGD--FLQ--V 218
+++ I ++ N H+++ + T D + D D F
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIG 478
Query: 219 YVH------PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL------LYH 266
+ H P + F D F+E I W G + L
Sbjct: 479 H-HLKNIEHPERMTLFRMVFL-D-----FRFLEQ--KIRHDSTAWNASGSILNTLQQLKF 529
Query: 267 YSNMLNEDSIEPSYE-VVKQVIQGLGFVYEVES 298
Y + ++ +P YE +V ++ F+ ++E
Sbjct: 530 YKPYICDN--DPKYERLVNAILD---FLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-06
Identities = 47/319 (14%), Positives = 89/319 (27%), Gaps = 101/319 (31%)
Query: 23 KYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNSTD--------- 73
+YKD L+ + N++ KDV M +++ S E I I ++
Sbjct: 17 QYKDILSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 74 LEKVQTTLKQFVRD------------WSEE--GSEERKTCYEPIISEIL---ARFPPETI 116
L K + +++FV + E Y + F +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 117 N-PKDV--------------NILVPG-AGLGR--LAFEIARRGYVCQGNEFSLFMLFASN 158
+ + N+L+ G G G+ +A + VC + M F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD------VCLSYKVQCKMDF--- 182
Query: 159 FILNKCREKNVYKIYPWV----QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAA-- 212
KI+ W+ + +L Q + ++ D S
Sbjct: 183 ------------KIF-WLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKL 225
Query: 213 ---------GDFLQVYVHPNK-------WDC-VATCFFIDCANNIVSFIETIFNILKPGG 255
L+ + N + F + C + + + + + L
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 256 IWINLGPLLYHYSNMLNED 274
L H+S L D
Sbjct: 286 TTH---ISLDHHSMTLTPD 301
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 52/160 (32%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
I E N + L G G L + + + S M L++
Sbjct: 27 IIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEM-------LSE 74
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
K + Q + + ++
Sbjct: 75 AENK--------FRSQGLKPRLACQDI---------------SNLNI-----------NR 100
Query: 224 KWDCVATCFF-----IDCANNIVSFIETIFNILKPGGIWI 258
K+D + TC I ++++ + + + N LK GG++I
Sbjct: 101 KFDLI-TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 56/156 (35%)
Query: 114 ETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREK------ 167
P +L AG+GRL F G+ E S + L R++
Sbjct: 77 TRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSV-------LAAFRKRLAEAPA 129
Query: 168 NVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDC 227
+V VQ D F++ ++
Sbjct: 130 DVRDRCTLVQG-------------------------DMSAFAL-----------DKRFGT 153
Query: 228 VATCFFIDCANNI-----VSFIETIFNILKPGGIWI 258
V N + ++ L+PGG ++
Sbjct: 154 V-VISS-GSINELDEADRRGLYASVREHLEPGGKFL 187
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 220 VHPNKWDCVATCFFIDCA-NNIVSFIETIFNI---LKPGGIWINLGPLLYHY--SNMLNE 273
V DC+ + +D A ++ ++ + N+ LKPGG + + L Y
Sbjct: 153 VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212
Query: 274 DSIEPSYEVVKQVIQGLGF 292
S+ +E V+ ++ G+
Sbjct: 213 SSLPLGWETVRDAVEEAGY 231
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 22/160 (13%), Positives = 43/160 (26%), Gaps = 56/160 (35%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
I++++ P+ ++L G G + G E S M L
Sbjct: 30 IADLVRSR-----TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDM-------LTH 77
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
R++ + H M DF +
Sbjct: 78 ARKRL------------PDATLHQGDM---------------RDFRL-----------GR 99
Query: 224 KWDCVATCFF-----IDCANNIVSFIETIFNILKPGGIWI 258
K+ V F + + + + + L+PGG+ +
Sbjct: 100 KFSAV-VSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 56/160 (35%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
++ ++ R +PK ++L G G +A +G E S M L
Sbjct: 40 LAALVRRH-----SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADM-------LAI 87
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
R +N + + HH M DFS+
Sbjct: 88 ARRRNP------------DAVLHHGDM---------------RDFSL-----------GR 109
Query: 224 KWDCVATCFF-----IDCANNIVSFIETIFNILKPGGIWI 258
++ V TC F + + + +E + P G+ +
Sbjct: 110 RFSAV-TCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 52/200 (26%)
Query: 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161
+ + + P I L G GR A +A GY + S L
Sbjct: 19 DFLVSVANQIPQGKI-------LCLAEGEGRNACFLASLGYEVTAVDQSSVGL---AKAK 68
Query: 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH 221
+EK V I T + +
Sbjct: 69 QLAQEKGV------------KITTVQ-------------------------SNLADFDIV 91
Query: 222 PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI----NLGPLLYHYSNMLNEDSIE 277
+ W+ + + F ++ ++ LKPGG++I L Y+ + D +
Sbjct: 92 ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLL- 150
Query: 278 PSYEVVKQVIQGLGFVYEVE 297
P E ++ + L ++
Sbjct: 151 PKLETLQSELPSLNWLIANN 170
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 298 | |||
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.84 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.83 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.82 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.81 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.8 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.8 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.8 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.78 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.78 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.78 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.77 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.77 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.77 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.77 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.77 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.76 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.76 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.76 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.76 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.76 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.75 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.75 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.75 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.75 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.74 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.74 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.74 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.73 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.73 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.73 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.72 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.72 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.72 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.71 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.7 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.7 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.7 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.7 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.7 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.68 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.66 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.66 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.66 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.66 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.66 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.66 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.65 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.64 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.64 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.64 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.63 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.62 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.62 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.61 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.6 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.6 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.58 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.58 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.57 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.55 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.55 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.55 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.55 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.55 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.55 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.54 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.54 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.54 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.54 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.54 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.54 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.54 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.53 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.53 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.53 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.53 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.53 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.52 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.52 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.52 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.51 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.51 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.51 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.51 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.51 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.51 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.51 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.5 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.5 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.5 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.5 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.5 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.49 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.48 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.48 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.48 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.48 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.47 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.47 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.47 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.46 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.45 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.44 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.44 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.44 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.44 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.44 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.43 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.43 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.43 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.43 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.43 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.43 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.43 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.42 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.42 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.42 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.42 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.42 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.42 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.41 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.41 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.41 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.41 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.4 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.4 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.39 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.39 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.39 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.39 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.38 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.38 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.37 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.37 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.36 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.36 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.36 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.34 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.34 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.34 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.34 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.34 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.33 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.33 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.33 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.33 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.32 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.32 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.32 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.31 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.3 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.3 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.3 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.29 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.29 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.29 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.29 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.28 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.28 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.27 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.26 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.25 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.24 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.23 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.23 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.23 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.22 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.21 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.21 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.21 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.21 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.21 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.2 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.2 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.19 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.18 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.18 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.18 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.17 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.17 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.17 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.17 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.16 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.16 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.16 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.16 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.14 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.14 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.13 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.11 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.1 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.09 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.08 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.07 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.06 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.05 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.05 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.04 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.03 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.01 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.99 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.99 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.98 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.97 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.97 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.96 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.95 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.94 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.85 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.85 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.84 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.84 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.84 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.83 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.83 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.81 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.78 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.75 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.69 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.68 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.66 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.63 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.56 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.55 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.54 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.53 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.52 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.52 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.52 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.5 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.49 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.47 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.42 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.41 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.4 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.4 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.39 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.34 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.33 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.32 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.17 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.11 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.94 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.92 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.9 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.87 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.84 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.8 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.72 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.25 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.14 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.07 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.06 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.8 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.8 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.73 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.61 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.47 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.32 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.24 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.18 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.16 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.13 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.07 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.06 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.89 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.86 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.77 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.7 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.66 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.65 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.65 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.64 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.62 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.59 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.57 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.55 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.51 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.47 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.43 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.4 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.4 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.32 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.3 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.29 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.29 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.26 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.18 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.17 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.09 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.08 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.08 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.05 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.95 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.92 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.89 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 94.88 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.81 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.79 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 94.77 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.75 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.65 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.55 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.53 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.53 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.52 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.5 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.47 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.4 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.32 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 94.29 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.24 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.22 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.21 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.16 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.09 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.09 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.03 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.97 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.97 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.91 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.9 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.82 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.78 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.69 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.65 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.42 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.33 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.29 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.22 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.19 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.99 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.98 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 92.96 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.92 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.86 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.86 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.85 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.72 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 92.7 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.65 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.56 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.45 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.15 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 92.12 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 92.11 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 92.06 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.94 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.83 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.8 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.59 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 91.48 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.24 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.2 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.19 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.17 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.14 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.12 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 91.08 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.89 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.64 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 90.6 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 90.42 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.42 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.32 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 90.12 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 90.07 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 89.84 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 89.81 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 89.74 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 89.5 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.48 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.26 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 89.19 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 88.91 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.9 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 88.62 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 88.58 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 88.48 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 88.37 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.23 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 88.16 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.07 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 88.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.88 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 87.57 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 87.47 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 87.38 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 87.32 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.28 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 87.24 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.07 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 87.03 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 86.96 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 86.92 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.88 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 86.86 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 86.84 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.78 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 86.7 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 86.41 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 86.4 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.17 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 86.17 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 86.09 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 86.09 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 86.08 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 85.99 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 85.95 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 85.9 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 85.82 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 85.6 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 85.59 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.56 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 85.53 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 85.49 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 85.3 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 85.19 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 85.18 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 85.16 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 85.14 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 85.14 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 85.12 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 84.84 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 84.81 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 84.81 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 84.7 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 84.67 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 84.65 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.65 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 84.58 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 84.51 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 84.5 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 84.43 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 84.38 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 84.26 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 84.04 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 84.04 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 83.96 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 83.87 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 83.83 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 83.76 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 83.74 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 83.69 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 83.63 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 83.55 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 83.47 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 83.45 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 83.44 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 83.42 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 83.42 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 83.34 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 83.21 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 83.16 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 83.07 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 82.91 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.88 |
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=163.19 Aligned_cols=148 Identities=12% Similarity=0.117 Sum_probs=103.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..||++|++|+|+|+|+.|+..|+..... . .. ... ..+..
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~---~--~~----~~~---------------~~~~~ 77 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGE---Q--PH----ITS---------------QGDFK 77 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCS---C--SE----EEE---------------ETTEE
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccC---C--cc----ccc---------------ccccc
Confidence 467999999999999999999999999999999999988763210 0 00 000 00000
Q ss_pred CCCCCCCCCeeEEeccccccccCC-CceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.....++.+..+|+.++...+ ++||+|++..++++. ++...++++++++|||||+++.+. +.|.... ...+.
T Consensus 78 ---~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~-~~~~~~~-~~~~~ 152 (203)
T 1pjz_A 78 ---VYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT-LEYDQAL-LEGPP 152 (203)
T ss_dssp ---EEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE-ESSCSSS-SSSCC
T ss_pred ---cccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE-EecCccc-cCCCC
Confidence 000137889999999987654 799999987666544 456679999999999999833221 1222111 11234
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+|+.+++.+ ||+++.
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEE
T ss_pred CCCCHHHHHHHhcC-CcEEEE
Confidence 55899999999998 999865
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=160.24 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhhhccCChHH-HhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHH
Q psy3185 76 KVQTTLKQFVRDWSEEGSEE-RKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 76 ~v~~~l~~~~RdWs~~g~~E-R~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml 154 (298)
.+.......+..|....... .......+++.+...++ ++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~ 88 (242)
T 3l8d_A 15 SAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVK------KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMI 88 (242)
T ss_dssp -----------------CHHHHTSTTTTHHHHHHHHSC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcC------CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHH
Confidence 34444444455555422211 11223347788888776 357999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccc
Q psy3185 155 FASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFI 234 (298)
Q Consensus 155 ~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffi 234 (298)
..++... ...++.+..+|+.++..++++||+|++...+
T Consensus 89 ~~a~~~~------------------------------------------~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 89 QKGKERG------------------------------------------EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp HHHHTTT------------------------------------------CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred HHHHhhc------------------------------------------ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 8876410 0136889999999887678999999999999
Q ss_pred cCcchHHHHHHHHHHhccCCeEEEEeccc--c------ccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 235 DCANNIVSFIETIFNILKPGGIWINLGPL--L------YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 235 dta~n~~~yl~~I~~~LkpGG~~In~gPl--~------y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
++.++...++++++++|||||+++...+. . |............++.+++.++++++||+++..
T Consensus 127 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 127 EWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp TSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred hhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999854321 0 100000112334589999999999999999864
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=158.39 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=116.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.+..+++.+....+ +.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++...
T Consensus 29 ~~~~~~~~l~~~~~-------~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------------- 84 (250)
T 2p7i_A 29 MHPFMVRAFTPFFR-------PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL----------------- 84 (250)
T ss_dssp HHHHHHHHHGGGCC-------SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHHHhhcC-------CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhh-----------------
Confidence 44556676665443 568999999999999999999999999999999999887521
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHH-HhccCCeEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIF-NILKPGGIW 257 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~-~~LkpGG~~ 257 (298)
+ .++.+..+|+.++ ..+++||+|++...+++.++...++++++ ++|||||++
T Consensus 85 ------------------------~--~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l 137 (250)
T 2p7i_A 85 ------------------------K--DGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRL 137 (250)
T ss_dssp ------------------------C--SCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEE
T ss_pred ------------------------h--CCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEE
Confidence 1 1577889999887 35789999999999999999999999999 999999999
Q ss_pred EEeccccc----------cccCC---------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 258 INLGPLLY----------HYSNM---------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 258 In~gPl~y----------~~~~~---------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+...|... ++... .......++.+++.++++++||+++..
T Consensus 138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 138 FLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp EEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 86554321 10000 011224589999999999999999763
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=152.80 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=107.3
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..|+++|..|+|+|+|+.|+..++...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------------------------------------- 83 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-------------------------------------- 83 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC--------------------------------------
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------------------------------------
Confidence 569999999999999999999999999999999999877510
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEecccccccc--CCCCCCc
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYHYS--NMLNEDS 275 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~~~--~~~~~~~ 275 (298)
.++.+..+|+.++...+++||+|++...+++.. ++..++++++++|||||.++...+..-... .......
T Consensus 84 ------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 157 (203)
T 3h2b_A 84 ------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATA 157 (203)
T ss_dssp ------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCE
T ss_pred ------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhh
Confidence 256788999988876779999999998888775 899999999999999999985432111100 0011123
Q ss_pred cCCCHHHHHHHHHhCCCEEEEe
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..++.+++.++++++||+++..
T Consensus 158 ~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 158 YRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp EECCHHHHHHHHHHTTEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCcEEEE
Confidence 4578999999999999999763
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=157.94 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=110.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..+++.|..|+|+|+|+.|+..++..+...
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------------- 113 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAK----------------------------------- 113 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC------------------------------------
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 579999999999999999999999999999999999988743210
Q ss_pred CCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc--------------
Q psy3185 200 SDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL-------------- 264 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~-------------- 264 (298)
.+ ..++.+..+|+.++. ..+++||+|++...+++.++...++++++++|||||+++...|-.
T Consensus 114 -~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 190 (285)
T 4htf_A 114 -GV--SDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFD 190 (285)
T ss_dssp -CC--GGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHH
T ss_pred -CC--CcceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHH
Confidence 00 137889999999886 467899999999999999999999999999999999998543310
Q ss_pred ccccCC------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 265 YHYSNM------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 265 y~~~~~------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+..... ...+...++.+++.++++++||+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~ 229 (285)
T 4htf_A 191 YVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGK 229 (285)
T ss_dssp HHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEE
T ss_pred HHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeee
Confidence 000000 112335589999999999999999854
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=159.52 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=104.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..||++|++|+|+|+|+.|+..|+...+. .++ .+++.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~-----~~~----------------------~~~~~ 120 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL-----SYT----------------------EEPLA 120 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC-----CEE----------------------EEECT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc-----ccc----------------------ccccc
Confidence 467999999999999999999999999999999999988652110 000 00000
Q ss_pred CCC-C----CCCCCeeEEeccccccccCC-CceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCC
Q psy3185 199 TSD-Y----NDDCDFSMAAGDFLQVYVHP-NKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNM 270 (298)
Q Consensus 199 ~~~-~----~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~ 270 (298)
... . ....++.+.+||+.++...+ ++||+|++..+++.. ++...|++++.++|||||+++.+.. .|.....
T Consensus 121 ~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~-~~~~~~~ 199 (252)
T 2gb4_A 121 EIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL-SYDPTKH 199 (252)
T ss_dssp TSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE-ECCTTSC
T ss_pred ccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE-ecCCccC
Confidence 000 0 01147899999999987654 899999977665543 4567899999999999999853221 1211111
Q ss_pred CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..+...++.+|+.+++.. +|+++.
T Consensus 200 -~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 200 -AGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp -CCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred -CCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 124455899999999987 699875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=150.92 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..+++.|.+|+|+|+|+.|+..++. .
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~---~----------------------------------- 87 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR---H----------------------------------- 87 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG---G-----------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh---c-----------------------------------
Confidence 35699999999999999999999999999999999987754 1
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccc--------ccc-
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLL--------YHY- 267 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~--------y~~- 267 (298)
. ..++.+..+|+.++ ..+++||+|++.+.+++.++ +..++++++++|||||.++...+-. |..
T Consensus 88 --~---~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 161 (218)
T 3ou2_A 88 --G---LDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSE 161 (218)
T ss_dssp --C---CTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC----------
T ss_pred --C---CCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcc
Confidence 0 03688999999888 56789999999998888877 4899999999999999997543210 000
Q ss_pred ------cCCCCCC-----ccCCCHHHHHHHHHhCCCEEEE
Q psy3185 268 ------SNMLNED-----SIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 268 ------~~~~~~~-----~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+... ...++.+++.++++++||+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 201 (218)
T 3ou2_A 162 PEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSV 201 (218)
T ss_dssp --CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEe
Confidence 0000011 1246999999999999999764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=155.73 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=113.3
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~ 183 (298)
..+.+.++. .++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++....
T Consensus 34 ~~l~~~~~~----~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------------- 88 (253)
T 3g5l_A 34 HELKKMLPD----FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--------------------- 88 (253)
T ss_dssp HHHHTTCCC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------------------
T ss_pred HHHHHhhhc----cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------------------
Confidence 445666653 3578999999999999999999998 89999999999998876210
Q ss_pred cccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec--
Q psy3185 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG-- 261 (298)
Q Consensus 184 ~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g-- 261 (298)
..++.+..+|+.++...+++||+|++...+++.+++..++++++++|||||.++...
T Consensus 89 ---------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 89 ---------------------SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp ---------------------CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------------------cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 137889999998887677999999999999988999999999999999999998542
Q ss_pred ccc-------ccccCCCC-----------------------CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PLL-------YHYSNMLN-----------------------EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl~-------y~~~~~~~-----------------------~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|.. |.+..... ......|.+++.++++++||+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~ 212 (253)
T 3g5l_A 148 PVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINS 212 (253)
T ss_dssp HHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEE
T ss_pred CccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeee
Confidence 211 11110000 001123999999999999999975
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=151.29 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHH
Q psy3185 75 EKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml 154 (298)
..+.+.....+..|...... .+.+..+...++ ++.+|||+|||+|+++..+++.|..|+|+|+|+.|+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~ 78 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR------SATLTKFLGELP------AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELA 78 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC------CHHHHHHHTTSC------TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHhhccch------hHHHHHHHHhcC------CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHH
Confidence 34566666667777765433 234555555554 357999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccc
Q psy3185 155 FASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFI 234 (298)
Q Consensus 155 ~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffi 234 (298)
..++... ++.+..+|+..+. .+++||+|++...+
T Consensus 79 ~~a~~~~---------------------------------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l 112 (211)
T 3e23_A 79 AEASRRL---------------------------------------------GRPVRTMLFHQLD-AIDAYDAVWAHACL 112 (211)
T ss_dssp HHHHHHH---------------------------------------------TSCCEECCGGGCC-CCSCEEEEEECSCG
T ss_pred HHHHHhc---------------------------------------------CCceEEeeeccCC-CCCcEEEEEecCch
Confidence 9887621 2235667887776 67899999999888
Q ss_pred cCcc--hHHHHHHHHHHhccCCeEEEEecccccc-ccCCCCCCccCCCHHHHHHHHHhCC-CEEEEe
Q psy3185 235 DCAN--NIVSFIETIFNILKPGGIWINLGPLLYH-YSNMLNEDSIEPSYEVVKQVIQGLG-FVYEVE 297 (298)
Q Consensus 235 dta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~-~~~~~~~~~~~ls~eEl~~~~~~~G-F~i~~~ 297 (298)
++.. ++..++++++++|||||+++...|.... ...........++.+++.++++++| |+++..
T Consensus 113 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 113 LHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred hhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 8776 8889999999999999999854332111 0011112334579999999999999 998753
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-19 Score=154.29 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=108.4
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..|++.|..|+|+|+|+.|+..++......
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------------- 111 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSS----------------------------------- 111 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTS-----------------------------------
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhcc-----------------------------------
Confidence 459999999999999999999999999999999999887633210
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
+...++.+..+|+.++. .+++||+|++..++++.+ +...+++++.++|||||+++.... ........+...
T Consensus 112 ---~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~ 184 (235)
T 3lcc_A 112 ---PKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY---PITDHVGGPPYK 184 (235)
T ss_dssp ---GGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC---CCSCCCSCSSCC
T ss_pred ---CCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe---cccccCCCCCcc
Confidence 00136889999998875 456999999998888776 899999999999999999985432 111112234566
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
++.+++.+++++.||+++.
T Consensus 185 ~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 185 VDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp CCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHcCCeEEE
Confidence 8999999999999999875
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=149.80 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=111.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++.+ ..|+|+|+|+.|+..++..+...
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 85 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL------------------------------- 85 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 46799999999999999999987 78999999999999988743220
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.+ .++.+..+|+.++...+++||+|++...+++.++...++++++++|||||.++...+...... ......
T Consensus 86 -----~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~ 156 (219)
T 3dh0_A 86 -----GL---KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERD-KGPPPE 156 (219)
T ss_dssp -----TC---TTEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCS-SSCCGG
T ss_pred -----CC---CcEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccc-cCCchh
Confidence 00 268889999988876778999999999999889999999999999999999986543221111 111234
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+++.++++++||+++.
T Consensus 157 ~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 157 EVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp GSCCHHHHHHHHHHTTCEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEE
Confidence 558999999999999999875
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=150.35 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=111.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.|..+++.+... ++.+|||+|||+|+++..++++|.+|+|+|+|+.|+..++..+
T Consensus 33 ~~~~~l~~~~~~--------~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----------------- 87 (220)
T 3hnr_A 33 HYEDILEDVVNK--------SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL----------------- 87 (220)
T ss_dssp THHHHHHHHHHT--------CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHhhcc--------CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC-----------------
Confidence 344566655431 3679999999999999999999999999999999999887521
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHH--HHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVS--FIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~--yl~~I~~~LkpGG~ 256 (298)
+ .++.+..+|+.+++.. ++||+|++...+++.++... ++++++++|||||.
T Consensus 88 ------------------------~--~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 140 (220)
T 3hnr_A 88 ------------------------P--KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGK 140 (220)
T ss_dssp ------------------------C--TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCE
T ss_pred ------------------------C--CceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCE
Confidence 0 2567888999888665 89999999999998888766 99999999999999
Q ss_pred EEEeccccccccC----------CC-------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 257 WINLGPLLYHYSN----------ML-------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 257 ~In~gPl~y~~~~----------~~-------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
++...|..-.... .. ......++.+++.++++++||+++..
T Consensus 141 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 141 IVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp EEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 9865442111000 00 00123358999999999999998754
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=156.75 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=103.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
++.+|||+|||+|+++..||++ |++|+|+|+|+.|+..|+..+...
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~------------------------------ 119 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 119 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS------------------------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh------------------------------
Confidence 4789999999999999999986 678999999999999998743210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEecccc--------
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLL-------- 264 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~-------- 264 (298)
....++.+..||+.+++. +.||+|++.+.++..+ +...+|++|+++|||||++|...+..
T Consensus 120 --------~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~ 189 (261)
T 4gek_A 120 --------KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 189 (261)
T ss_dssp --------CCSSCEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHH
T ss_pred --------ccCceEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHH
Confidence 112478999999998854 5699999988887654 45679999999999999998643321
Q ss_pred -----cc-------ccCCCC--------CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 265 -----YH-------YSNMLN--------EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 265 -----y~-------~~~~~~--------~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|+ +....- .....+|.+++.++++++||+.+.
T Consensus 190 ~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve 241 (261)
T 4gek_A 190 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 241 (261)
T ss_dssp HHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEE
Confidence 11 100000 012346899999999999998653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=153.45 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=109.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++......
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~---------------------------------- 82 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN---------------------------------- 82 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999999888743210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccc----------c
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHY----------S 268 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~----------~ 268 (298)
.+ .++.+..+|+.+++.++++||+|++.+.+++.++...++++++++|||||.++...+..-.. .
T Consensus 83 --~~---~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 157 (260)
T 1vl5_A 83 --GH---QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVE 157 (260)
T ss_dssp --TC---CSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHH
T ss_pred --CC---CceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 00 26889999999887777999999999999999999999999999999999998543211000 0
Q ss_pred C-CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 269 N-MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 ~-~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
. ........++.+++.++++++||+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 186 (260)
T 1vl5_A 158 KERDYSHHRAWKKSDWLKMLEEAGFELEE 186 (260)
T ss_dssp HHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred HhcCccccCCCCHHHHHHHHHHCCCeEEE
Confidence 0 001123457899999999999999865
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=146.60 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhhhccCCh----HHHh-hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeC
Q psy3185 75 EKVQTTLKQFVRDWSEEGS----EERK-TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEF 149 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~~g~----~ER~-~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~ 149 (298)
.++.+.....+..|..... ..+. .....+++.+.. .++.+|||+|||+|.++..+++.|..|+|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~ 82 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILG--------RQPERVLDLGCGEGWLLRALADRGIEAVGVDG 82 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHH--------TCCSEEEEETCTTCHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhc--------CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcC
Confidence 4566777777777765221 1211 122234444432 13579999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---cc-CCCce
Q psy3185 150 SLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YV-HPNKW 225 (298)
Q Consensus 150 S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~-~~~~f 225 (298)
|+.|+..++.. .+..+..+|+.++ .. ..++|
T Consensus 83 s~~~~~~a~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 83 DRTLVDAARAA---------------------------------------------GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp CHHHHHHHHHT---------------------------------------------CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred CHHHHHHHHHh---------------------------------------------cccccchhhHHhhcccccccCCCc
Confidence 99999988751 1234556666655 22 34569
Q ss_pred eEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccC--------------CC----CCCccCCCHHHHHHHH
Q psy3185 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSN--------------ML----NEDSIEPSYEVVKQVI 287 (298)
Q Consensus 226 D~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~--------------~~----~~~~~~ls~eEl~~~~ 287 (298)
|+|++.+.++ ..++..++++++++|||||+++...|..+.... .. ......+|.+++.+++
T Consensus 118 D~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (227)
T 3e8s_A 118 DLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196 (227)
T ss_dssp EEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH
T ss_pred cEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH
Confidence 9999998888 788899999999999999999865442211110 00 0011235999999999
Q ss_pred HhCCCEEEE
Q psy3185 288 QGLGFVYEV 296 (298)
Q Consensus 288 ~~~GF~i~~ 296 (298)
+++||+++.
T Consensus 197 ~~aGf~~~~ 205 (227)
T 3e8s_A 197 DMAGLRLVS 205 (227)
T ss_dssp HHTTEEEEE
T ss_pred HHcCCeEEE
Confidence 999999985
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-18 Score=150.14 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=115.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
++..+.+.++. .++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++....
T Consensus 43 ~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------------- 99 (266)
T 3ujc_A 43 ATKKILSDIEL----NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVS------------------- 99 (266)
T ss_dssp HHHHHTTTCCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCC-------------------
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhh-------------------
Confidence 34455554442 35679999999999999999998 8999999999999998876211
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|+.+++.++++||+|++...+++. ++...++++++++|||||.++.
T Consensus 100 ----------------------~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (266)
T 3ujc_A 100 ----------------------GNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLI 157 (266)
T ss_dssp ----------------------SCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------------cCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEE
Confidence 0037889999999887678999999999999888 8999999999999999999986
Q ss_pred eccccccccCCC--------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 LGPLLYHYSNML--------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~gPl~y~~~~~~--------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..|......... ......++.+++.++++++||+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 203 (266)
T 3ujc_A 158 TDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVS 203 (266)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 544211100000 01223578999999999999998753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=153.10 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+++.+....+ ++.+|||+|||+|+++..+++.|.+|+|+|+|+.|+..++...
T Consensus 39 ~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------------------- 92 (263)
T 3pfg_A 39 DLAALVRRHSP------KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN-------------------- 92 (263)
T ss_dssp HHHHHHHHHCT------TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhhCC------CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC--------------------
Confidence 46667776665 3579999999999999999999999999999999999887520
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCc---chHHHHHHHHHHhccCCeEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCA---NNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta---~n~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+..+|+.++.. +++||+|++.+ .+++. .++..++++++++|||||++
T Consensus 93 ------------------------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l 147 (263)
T 3pfg_A 93 ------------------------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVV 147 (263)
T ss_dssp ------------------------TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred ------------------------CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEE
Confidence 156788899988765 78999999987 77766 46778999999999999999
Q ss_pred EE
Q psy3185 258 IN 259 (298)
Q Consensus 258 In 259 (298)
+.
T Consensus 148 ~i 149 (263)
T 3pfg_A 148 VV 149 (263)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=151.26 Aligned_cols=154 Identities=18% Similarity=0.109 Sum_probs=116.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
+...++.+.+.++. .++.+|||+|||+|.++..+|+. |..|+|+|+|+.|+..++......
T Consensus 21 ~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-------------- 82 (256)
T 1nkv_A 21 TEEKYATLGRVLRM----KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL-------------- 82 (256)
T ss_dssp CHHHHHHHHHHTCC----CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred CHHHHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--------------
Confidence 34456666666653 35679999999999999999987 789999999999999988743210
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.+..+|+.++++ +++||+|++...+++.+++..++++++++|||||.++
T Consensus 83 ----------------------~~--~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~ 137 (256)
T 1nkv_A 83 ----------------------GV--SERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137 (256)
T ss_dssp ----------------------TC--TTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred ----------------------CC--CcceEEEECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEE
Confidence 00 1378899999998876 7899999998888888889999999999999999998
Q ss_pred EeccccccccC--------CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 259 NLGPLLYHYSN--------MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 259 n~gPl~y~~~~--------~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...|....... ........++.+++.++++++||+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 138 IGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 183 (256)
T ss_dssp EEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred EecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEE
Confidence 65542110000 001122457899999999999998754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-18 Score=148.51 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=110.4
Q ss_pred HHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccc
Q psy3185 106 EILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNIL 184 (298)
Q Consensus 106 ~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~ 184 (298)
.+...++. .++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++....
T Consensus 34 ~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------------------- 87 (243)
T 3bkw_A 34 ALRAMLPE----VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP---------------------- 87 (243)
T ss_dssp HHHHHSCC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC----------------------
T ss_pred HHHHhccc----cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc----------------------
Confidence 34555542 2467999999999999999999999 89999999999998875110
Q ss_pred ccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc
Q psy3185 185 THHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 185 ~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
..++.+..+|+.++...+++||+|++...+++.++...++++++++|||||+++...|..
T Consensus 88 --------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 88 --------------------DTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp --------------------SSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred --------------------cCCceEEEcChhhccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 026788999998876667899999999988888899999999999999999998533210
Q ss_pred ---------ccccCCC----------------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 265 ---------YHYSNML----------------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 265 ---------y~~~~~~----------------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|...... .......|.+++.++++++||+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~ 210 (243)
T 3bkw_A 148 IYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEH 210 (243)
T ss_dssp HHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEE
T ss_pred ccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeee
Confidence 1100000 0011125899999999999999875
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=153.89 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=108.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+.+.+...++.. .++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++.
T Consensus 28 ~~~~~~~~l~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~----------------------- 81 (240)
T 3dli_A 28 VKARLRRYIPYF---KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG----------------------- 81 (240)
T ss_dssp HHHHHGGGGGGT---TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHhhh---cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------------------
Confidence 445555444421 246799999999999999999999999999999999987653
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEecccccc--ccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV--YVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~--~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~I 258 (298)
++.+..+|+.++ ...+++||+|++...+++.. ++..++++++++|||||+++
T Consensus 82 ------------------------~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (240)
T 3dli_A 82 ------------------------KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137 (240)
T ss_dssp ------------------------TSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEE
T ss_pred ------------------------hcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 134566676664 34578999999999888777 67999999999999999998
Q ss_pred Eecccccccc-----CCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 259 NLGPLLYHYS-----NMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 259 n~gPl~y~~~-----~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
...|...... -........++.+++.++++++||+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 138 IESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp EEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred EEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 6544211100 00112345688999999999999998753
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-18 Score=144.30 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=103.5
Q ss_pred eEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
+|||+|||+|+++..+++.|+.|+|+|+|+.|+..++......
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------------- 74 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEK------------------------------------- 74 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH-------------------------------------
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------------
Confidence 9999999999999999999999999999999999888743210
Q ss_pred CCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccc---cCCCCCCccCC
Q psy3185 202 YNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHY---SNMLNEDSIEP 278 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~---~~~~~~~~~~l 278 (298)
..++.+..+|+.++..++++||+|++++...+..+...+++++.++|||||+++...+..... ...+..+...+
T Consensus 75 ---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 151 (202)
T 2kw5_A 75 ---GVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLP 151 (202)
T ss_dssp ---TCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCC
T ss_pred ---CCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeec
Confidence 025678888888876667899999987644455678899999999999999998654321111 11112234678
Q ss_pred CHHHHHHHHHhCCCEEEE
Q psy3185 279 SYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 279 s~eEl~~~~~~~GF~i~~ 296 (298)
+.+|+.++++ ||+++.
T Consensus 152 ~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 152 KLETLQSELP--SLNWLI 167 (202)
T ss_dssp CHHHHHHHCS--SSCEEE
T ss_pred CHHHHHHHhc--CceEEE
Confidence 9999999998 999875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=146.93 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=112.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
..+.+.+...++. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|+..++....
T Consensus 29 ~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------------- 89 (234)
T 3dtn_A 29 DDFYGVSVSIASV---DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR---------------- 89 (234)
T ss_dssp HHHHHHHHHTCCC---SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHhhc---CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhc----------------
Confidence 3345556665542 135689999999999999999998 7899999999999998876211
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH--HHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV--SFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~--~yl~~I~~~LkpGG~ 256 (298)
...++.+..+|+.++... ++||+|++...+++..+.. .++++++++|||||.
T Consensus 90 -------------------------~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 143 (234)
T 3dtn_A 90 -------------------------GNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGI 143 (234)
T ss_dssp -------------------------SCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred -------------------------cCCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcE
Confidence 012788999999988755 8999999998888776554 699999999999999
Q ss_pred EEEecccc-------------c-------cccC-------CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLL-------------Y-------HYSN-------MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~-------------y-------~~~~-------~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
++...+.. | ++.. ........++.+++.++++++||+.++
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 210 (234)
T 3dtn_A 144 FINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVS 210 (234)
T ss_dssp EEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEE
T ss_pred EEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCcee
Confidence 98643321 1 0000 000233457899999999999999875
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=142.48 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=105.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..+++.|++|+|+|+|+.|+..++......
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 77 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE---------------------------------- 77 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC----------------------------------
Confidence 3569999999999999999999999999999999999888743210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCcc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSI 276 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~ 276 (298)
.+ .++.+..+|+.++.. +++||+|++...+++.+ +...+++.+.++|||||.++.+.+..-.....+.....
T Consensus 78 --~~---~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 151 (199)
T 2xvm_A 78 --NL---DNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPF 151 (199)
T ss_dssp --TC---TTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSC
T ss_pred --CC---CCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCC
Confidence 00 257889999988765 78999999988777555 88999999999999999987554432111111112345
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++.+|+.++++. |+++.
T Consensus 152 ~~~~~~l~~~~~~--f~~~~ 169 (199)
T 2xvm_A 152 AFKEGELRRYYEG--WERVK 169 (199)
T ss_dssp CBCTTHHHHHTTT--SEEEE
T ss_pred ccCHHHHHHHhcC--CeEEE
Confidence 6799999999976 98875
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=148.77 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=117.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.+++.+.+.++. .++.+|||+|||+|.++..+++. |.+|+|+|+|+.|+..++......
T Consensus 48 ~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------- 107 (273)
T 3bus_A 48 RLTDEMIALLDV----RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA---------------- 107 (273)
T ss_dssp HHHHHHHHHSCC----CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc----------------
Confidence 355666666653 24679999999999999999985 889999999999999887643210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.+ ..++.+..+|+.+++.++++||+|++...+++.++...++++++++|||||.++..
T Consensus 108 --------------------~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 165 (273)
T 3bus_A 108 --------------------GL--ANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165 (273)
T ss_dssp --------------------TC--TTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEE
T ss_pred --------------------CC--CcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 00 13688999999988777789999999999999999999999999999999999754
Q ss_pred ccccccccC-----------CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 261 GPLLYHYSN-----------MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 261 gPl~y~~~~-----------~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+....... ........++.+++.++++++||+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 212 (273)
T 3bus_A 166 DFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTS 212 (273)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 332110000 000123458899999999999999875
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=151.58 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=111.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++......
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 128 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA--------------------------------- 128 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc---------------------------------
Confidence 4679999999999999999998 899999999999999888743210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML------ 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~------ 271 (298)
.+ ..++.+..+|+.+++.++++||+|++...+++.++...++++++++|||||+++...|...+.....
T Consensus 129 ---~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 203 (297)
T 2o57_A 129 ---GL--ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPIL 203 (297)
T ss_dssp ---TC--TTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHH
T ss_pred ---CC--CcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHH
Confidence 00 1368899999999877788999999999999889999999999999999999986654321110000
Q ss_pred --CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 272 --NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 272 --~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.......+.+++.++++++||+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 204 DRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp HHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 00122458999999999999998753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=152.05 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=106.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|+++..+++.|. .|+|+|+|+.|+..++..+...
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 110 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 110 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 467999999999999999999987 8999999999999888743210
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC----cchHHHHHHHHHHhccCCeEEEEecccc--------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC----ANNIVSFIETIFNILKPGGIWINLGPLL-------- 264 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt----a~n~~~yl~~I~~~LkpGG~~In~gPl~-------- 264 (298)
....++.+..+|+.+... .+++||+|++.+.+++ .++...++++++++|||||+++...|-.
T Consensus 111 -----~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 185 (298)
T 1ri5_A 111 -----KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK 185 (298)
T ss_dssp -----CCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred -----CCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHc
Confidence 001367889999988765 5789999999877744 6788899999999999999998543321
Q ss_pred --------c------------------cccCCC---CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 265 --------Y------------------HYSNML---NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 265 --------y------------------~~~~~~---~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
| ++.... ..+...++.+++.++++++||+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~ 247 (298)
T 1ri5_A 186 QGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVER 247 (298)
T ss_dssp HTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEE
T ss_pred cCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEe
Confidence 1 100000 00113468999999999999998753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=148.17 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=115.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
|..+.+.+.+.++. ++.+|||+|||+|.++..++++ |..|+|+|+|+.|+..++..+...
T Consensus 29 ~~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------------- 89 (219)
T 3dlc_A 29 YPIIAENIINRFGI-----TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA-------------- 89 (219)
T ss_dssp HHHHHHHHHHHHCC-----CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred cHHHHHHHHHhcCC-----CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc--------------
Confidence 44466667666653 2339999999999999999998 779999999999999988743320
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.+..+|+.++..++++||+|++...+++.++...++++++++|||||+++
T Consensus 90 ------------------------~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 145 (219)
T 3dlc_A 90 ------------------------NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTY 145 (219)
T ss_dssp ------------------------TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ------------------------cccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEE
Confidence 00137889999999987777999999999988888999999999999999999988
Q ss_pred Eecccccc---------cc-CCCC------CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 259 NLGPLLYH---------YS-NMLN------EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 259 n~gPl~y~---------~~-~~~~------~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+..-. .. ..+. .....++.+++.++++++||+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 146 IGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred EEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 64332100 00 0000 011224779999999999997653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=151.27 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=110.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
....+.+.++. .++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++...
T Consensus 21 ~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------------------- 77 (259)
T 2p35_A 21 PARDLLAQVPL----ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------------------- 77 (259)
T ss_dssp HHHHHHTTCCC----SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------------------
T ss_pred HHHHHHHhcCC----CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------------------
Confidence 33455555542 34679999999999999999998 889999999999999877510
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.++.+..+|+.++. .+++||+|++.+.+++.++...++++++++|||||.++..
T Consensus 78 -------------------------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 78 -------------------------PNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp -------------------------TTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred -------------------------CCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 25678889998876 6789999999999999999999999999999999999864
Q ss_pred cccccc---------------ccCC-C---CCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 261 GPLLYH---------------YSNM-L---NEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 261 gPl~y~---------------~~~~-~---~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
.|-.+. +... . ......++.+++.++++++||++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 132 MPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp EECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEEEEE
T ss_pred eCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCCceE
Confidence 432110 0000 0 012344789999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=147.63 Aligned_cols=139 Identities=13% Similarity=0.165 Sum_probs=109.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++......
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 66 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK---------------------------------- 66 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999999887643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc------ccC---
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH------YSN--- 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~------~~~--- 269 (298)
.+ .++.+..+|+.+++..+++||+|++.+.+++..++..++++++++|||||.++...+..-. +..
T Consensus 67 --~~---~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 141 (239)
T 1xxl_A 67 --GV---ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLN 141 (239)
T ss_dssp --TC---CSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHH
T ss_pred --CC---CCeEEEecccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHH
Confidence 00 2678899999888767789999999998888889999999999999999999854332100 000
Q ss_pred --CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 270 --MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 --~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
........++.+++.++++++||+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 170 (239)
T 1xxl_A 142 RLRDPSHVRESSLSEWQAMFSANQLAYQD 170 (239)
T ss_dssp HHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred HhccccccCCCCHHHHHHHHHHCCCcEEE
Confidence 001123457899999999999999875
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=154.48 Aligned_cols=133 Identities=20% Similarity=0.147 Sum_probs=105.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------------------------- 99 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------------------------------------- 99 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-------------------------------------
Confidence 4679999999999999999999999999999999999876510
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccc-------------
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLY------------- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y------------- 265 (298)
.++.+..+|+.+++. +++||+|++.+.+++..+...++++++++|||||.++...|...
T Consensus 100 -------~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 3ccf_A 100 -------PHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171 (279)
T ss_dssp -------TTSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHH
T ss_pred -------CCCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHH
Confidence 145678888888764 68999999999999889999999999999999999875433110
Q ss_pred ---cccC-CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 266 ---HYSN-MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 ---~~~~-~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+... ....+...++.+++.++++++||+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 206 (279)
T 3ccf_A 172 ETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTY 206 (279)
T ss_dssp HHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEE
T ss_pred HhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEE
Confidence 0000 001123456899999999999999875
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=143.71 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=108.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..+++.|..|+|+|+|+.|+..++..... . .++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~---~-------------------------~~~~-- 79 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARS---P-------------------------GLNQ-- 79 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTC---C-------------------------SCCS--
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHh---c-------------------------CCcc--
Confidence 367999999999999999999999999999999999988763221 0 0000
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH---HHHHHHHHhccCCeEEEEecccc-----------
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV---SFIETIFNILKPGGIWINLGPLL----------- 264 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~---~yl~~I~~~LkpGG~~In~gPl~----------- 264 (298)
....++.+..+|+..+...+++||+|++...+++..+.. .++++++++|||||+++...+..
T Consensus 80 ----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~ 155 (235)
T 3sm3_A 80 ----KTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRY 155 (235)
T ss_dssp ----SSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHH
T ss_pred ----ccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHh
Confidence 011478899999998877789999999998888777666 89999999999999998643310
Q ss_pred ------------ccccCC-CC---CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 265 ------------YHYSNM-LN---EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 265 ------------y~~~~~-~~---~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|...+. .. .....++.+++.++++++||+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~ 203 (235)
T 3sm3_A 156 LHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDY 203 (235)
T ss_dssp HHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEE
T ss_pred hhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEE
Confidence 000000 00 012357999999999999999975
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=149.95 Aligned_cols=168 Identities=16% Similarity=0.175 Sum_probs=108.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|+++..+++.|+ .|+|+|+|+.|+..++..+.... ..+...|+....++.....+ ..++.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~ 128 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEP--GAFDWSPVVTYVCDLEGNRM-----KGPEK 128 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCT--TCCCCHHHHHHHHHHTTTCS-----CHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCC--ccccchhhhhhhhccccccc-----chHHH
Confidence 467999999999999999999998 89999999999998877443210 00000000000000000000 00000
Q ss_pred CCCCCCCCCCe-eEEecccccccc-CC---CceeEEEeccccc----CcchHHHHHHHHHHhccCCeEEEEecccccccc
Q psy3185 198 NTSDYNDDCDF-SMAAGDFLQVYV-HP---NKWDCVATCFFID----CANNIVSFIETIFNILKPGGIWINLGPLLYHYS 268 (298)
Q Consensus 198 ~~~~~~~~~~~-~~~~gDf~~~~~-~~---~~fD~V~t~ffid----ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~ 268 (298)
.. .+ ..++ .+..+|+.+... .+ ++||+|++.+.++ +.+++..++++++++|||||++|...++...+.
T Consensus 129 ~~-~l--~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 129 EE-KL--RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp HH-HH--HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred HH-Hh--hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 00 00 0126 788888877643 34 7999999999888 777899999999999999999986554321111
Q ss_pred CCCC--CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 269 NMLN--EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 ~~~~--~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.... .....++.+++.++++++||+++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 235 (265)
T 2i62_A 206 MIGEQKFSSLPLGWETVRDAVEEAGYTIEQ 235 (265)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTCEEEE
T ss_pred EcCCccccccccCHHHHHHHHHHCCCEEEE
Confidence 0001 123457899999999999999875
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=146.26 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=113.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
....+...++.. .++.+|||+|||+|.++..+++.+. .|+|+|+|+.|+..++......
T Consensus 33 ~~~~~l~~l~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------- 92 (257)
T 3f4k_A 33 ATRKAVSFINEL---TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA----------------- 92 (257)
T ss_dssp HHHHHHTTSCCC---CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcC---CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 445555555321 3467999999999999999999965 8999999999999888743210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.+ ..++.+..+|+.+++..+++||+|++...+++. +...++++++++|||||+++...
T Consensus 93 -------------------~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 93 -------------------NC--ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp -------------------TC--TTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -------------------CC--CCceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 01 135889999998887677999999999888887 78899999999999999998655
Q ss_pred cccccccCCCC--------CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PLLYHYSNMLN--------EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl~y~~~~~~~--------~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|. |....... ...-..+.+++.++++++||+++.
T Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 151 AS-WFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp EE-ESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred ee-ccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 43 11110000 011246899999999999999875
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=153.75 Aligned_cols=185 Identities=16% Similarity=0.132 Sum_probs=113.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
...+++.+.+.+... ..++.+|||+|||+|.++..++..|+ .|+|+|+|+.|+..++..++.. ...+...|.+..
T Consensus 38 ~~~~~~~~~~~~~~~--~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~--~~~~d~s~~~~~ 113 (263)
T 2a14_A 38 LKFNLECLHKTFGPG--GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE--PGAYDWTPAVKF 113 (263)
T ss_dssp HHHHHHHHHHHHSTT--SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC--TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC--CCcccchHHHHH
Confidence 345556666655211 13567999999999999998889998 4999999999999998744321 001111111100
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCee-EEecccccc-cc---CCCceeEEEecccccCc----chHHHHHHHHHH
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFS-MAAGDFLQV-YV---HPNKWDCVATCFFIDCA----NNIVSFIETIFN 249 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~-~~~gDf~~~-~~---~~~~fD~V~t~ffidta----~n~~~yl~~I~~ 249 (298)
-++.-...+. +++... .+ ..++. +..+|..+. +. ..++||+|++.+.++++ ++....+++|++
T Consensus 114 ~~~~~~~~~~-----~~~~~~-~~--~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r 185 (263)
T 2a14_A 114 ACELEGNSGR-----WEEKEE-KL--RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLAS 185 (263)
T ss_dssp HHHHTTCGGG-----HHHHHH-HH--HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHT
T ss_pred HHhcCCCCcc-----hhhHHH-HH--HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHH
Confidence 0000000000 000000 00 01233 677777763 21 24799999999988764 567789999999
Q ss_pred hccCCeEEEEecccc---ccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 250 ILKPGGIWINLGPLL---YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 250 ~LkpGG~~In~gPl~---y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+|||||++|..+++. |.... .......++.+++.++++++||+++..
T Consensus 186 ~LKPGG~li~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 186 LLKPGGHLVTTVTLRLPSYMVGK-REFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp TEEEEEEEEEEEESSCCEEEETT-EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred HcCCCcEEEEEEeecCccceeCC-eEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 999999999765432 11110 001224579999999999999998753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=145.60 Aligned_cols=138 Identities=16% Similarity=0.209 Sum_probs=107.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..|++.+. .|+|+|+|+.|+..++......
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------------- 125 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------------- 125 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG---------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc---------------------------------
Confidence 467999999999999999999865 7999999999999887632210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccccc---ccCCCC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYH---YSNMLN 272 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~---~~~~~~ 272 (298)
. ..++.+..+|+.++...+++||+|++.+.+++.++ +..+++++.++|||||+++...|.... +. ..
T Consensus 126 -----~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~ 197 (241)
T 2ex4_A 126 -----G-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD--DV 197 (241)
T ss_dssp -----G-GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE--TT
T ss_pred -----C-CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceec--cc
Confidence 0 02577889998888766779999999988887776 568999999999999999865543221 11 01
Q ss_pred CCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 273 EDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
......+.+++.++++++||+++..
T Consensus 198 ~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 198 DSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp TTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred CCcccCCHHHHHHHHHHcCCeEEEe
Confidence 1233458999999999999998764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=150.21 Aligned_cols=151 Identities=12% Similarity=0.025 Sum_probs=114.0
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~ 183 (298)
+.+.+.++. ..++.+|||+|||+|.++..++++ |..|+|+|+|+.|+..++......
T Consensus 106 ~~l~~~l~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------- 163 (312)
T 3vc1_A 106 EFLMDHLGQ---AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL------------------- 163 (312)
T ss_dssp HHHHTTSCC---CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHhcc---CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------------------
Confidence 445555541 134679999999999999999998 999999999999999988743210
Q ss_pred cccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 184 ~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
.+ ..++.+..+|+.+++..+++||+|++...+++. +...+++++.++|||||+++...|.
T Consensus 164 -----------------~~--~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 164 -----------------RI--DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp -----------------TC--TTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----------------CC--CCceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 01 137889999999887677999999999888877 5899999999999999999865543
Q ss_pred cccccCCCC---------CCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 264 LYHYSNMLN---------EDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 264 ~y~~~~~~~---------~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
......... ...-.++.+++.++++++||+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 224 WNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp ECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred ccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 211100000 0112468999999999999998753
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=143.66 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=84.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..+++.|.+|+|+|+|+.|+..++......
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~---------------------------------- 82 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ---------------------------------- 82 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc----------------------------------
Confidence 4679999999999999999999999999999999999888643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCc---chHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCA---NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta---~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.+..+|+.++..+ ++||+|++.+ .+++. +++..++++++++|||||+++.
T Consensus 83 ------~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 83 ------GLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp ------TCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------CCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 01577888998887654 8999999988 77766 7889999999999999999974
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=142.86 Aligned_cols=144 Identities=13% Similarity=0.202 Sum_probs=104.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|+++..+++++ ..|+|+|+|+.|+..++..+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL----------------------------RLPR 80 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC----------------------------CCCH
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------cCCc
Confidence 35799999999999999999987 58999999999999988743210 0000
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEecccccc--ccCC--
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYH--YSNM-- 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~--~~~~-- 270 (298)
. ...++.+..+|+.......++||+|++...+++.. ++..+++++.++|||||+++......|. +...
T Consensus 81 ~------~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 154 (217)
T 3jwh_A 81 N------QWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPA 154 (217)
T ss_dssp H------HHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC----
T ss_pred c------cCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccc
Confidence 0 01268899999876655568999999998888666 4589999999999999987743221121 1000
Q ss_pred ----CCCCccCCCHHHHH----HHHHhCCCEEEE
Q psy3185 271 ----LNEDSIEPSYEVVK----QVIQGLGFVYEV 296 (298)
Q Consensus 271 ----~~~~~~~ls~eEl~----~~~~~~GF~i~~ 296 (298)
.......++.+|+. +++++.||+++.
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 155 GKLRHKDHRFEWTRSQFQNWANKITERFAYNVQF 188 (217)
T ss_dssp -------CCSCBCHHHHHHHHHHHHHHSSEEEEE
T ss_pred ccccccccccccCHHHHHHHHHHHHHHcCceEEE
Confidence 01234568999999 899999999874
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=147.37 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=107.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|+++..+++.|+ .|+|+|+|+.|+..++.....
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------- 138 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc----------------------------------
Confidence 467999999999999999999875 599999999999988763210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEecccccc--ccCCCCC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYH--YSNMLNE 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~--~~~~~~~ 273 (298)
..++.+..+|+.++...+++||+|++.+.+++. +++..++++++++|||||+++...|..-. +......
T Consensus 139 -------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 211 (254)
T 1xtp_A 139 -------MPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211 (254)
T ss_dssp -------SSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTT
T ss_pred -------CCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccC
Confidence 036788999998877667899999999888877 56889999999999999999865442110 0000112
Q ss_pred CccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.....+.+++.++++++||+++..
T Consensus 212 ~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 212 SSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp TEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred CcccCCHHHHHHHHHHCCCEEEEe
Confidence 344578999999999999998753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=146.79 Aligned_cols=151 Identities=12% Similarity=0.002 Sum_probs=114.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+..+...++. ..++.+|||+|||+|.++..+++.+. .|+|+|+|+.|+..++......
T Consensus 33 ~~~~~l~~l~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------- 92 (267)
T 3kkz_A 33 VTLKALSFIDN---LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS----------------- 92 (267)
T ss_dssp HHHHHHTTCCC---CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHhccc---CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc-----------------
Confidence 44555555541 13568999999999999999999966 8999999999999988743210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.+ ..++.+..+|+.+++.++++||+|++...+++. +...++++++++|||||+++...
T Consensus 93 -------------------~~--~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 93 -------------------GL--QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp -------------------TC--TTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------------------CC--CcCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEE
Confidence 01 136889999999887677999999999888877 78999999999999999998655
Q ss_pred cccccccCCC--------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PLLYHYSNML--------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl~y~~~~~~--------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|. |...... .......+.+++.++++++||+++.
T Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 151 CS-WFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp EE-ESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred ee-ecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence 43 1111000 0011235899999999999999875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=152.11 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=107.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccc---cccc-
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKI---YPWV- 176 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i---~p~~- 176 (298)
.++..|.+.++.. ..++.+|||+|||+|+++..++.. |..|+|+|+|+.|+..++..+.+... .+.. .+++
T Consensus 56 ~~~~~l~~~l~~~--~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~v~ 131 (289)
T 2g72_A 56 WKLRCLAQTFATG--EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG--AFNWSMYSQHAC 131 (289)
T ss_dssp HHHHHHHHHHHTS--CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTT--CCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcc--cccchhhhhHHH
Confidence 3445555554321 124679999999999976655553 77999999999999988764332100 0000 0000
Q ss_pred --cccccc-ccccccccccccCCCCCCCCCCCCCeeEEeccccc-cc-----cCCCceeEEEecccccC----cchHHHH
Q psy3185 177 --QQTDNN-ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQ-VY-----VHPNKWDCVATCFFIDC----ANNIVSF 243 (298)
Q Consensus 177 --~~~s~~-~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~-~~-----~~~~~fD~V~t~ffidt----a~n~~~y 243 (298)
...+.. .....+++ .....+..+|+.+ .+ .++++||+|++.+.+++ .+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~ 197 (289)
T 2g72_A 132 LIEGKGECWQDKERQLR--------------ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRA 197 (289)
T ss_dssp HHHCSCCCHHHHHHHHH--------------HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHH
T ss_pred HhcCcccchhhhHHHHH--------------hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHH
Confidence 000000 00000000 0013456667665 32 13467999999998887 6789999
Q ss_pred HHHHHHhccCCeEEEEecccc---ccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 244 IETIFNILKPGGIWINLGPLL---YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 244 l~~I~~~LkpGG~~In~gPl~---y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+++++++|||||+++..+.+. |...+ ...+...++.+++.++++++||+++.
T Consensus 198 l~~~~r~LkpGG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 198 LDHITTLLRPGGHLLLIGALEESWYLAGE-ARLTVVPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp HHHHHTTEEEEEEEEEEEEESCCEEEETT-EEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCEEEEEEecCcceEEcCC-eeeeeccCCHHHHHHHHHHcCCeEEE
Confidence 999999999999998654331 11110 00123457999999999999999875
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=144.51 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=111.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHH-HcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIA-RRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela-~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.++. .++.+|||+|||+|.++..++ +.|.+|+|+|+|+.|+..++..+...
T Consensus 52 ~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~----------------- 110 (287)
T 1kpg_A 52 KIDLALGKLGL----QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS----------------- 110 (287)
T ss_dssp HHHHHHTTTTC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 44555555542 346799999999999999999 56899999999999999888743210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.+++ ++||+|++...+++. ++...++++++++|||||.++.
T Consensus 111 ---------------------~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 111 ---------------------ENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp ---------------------CCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred ---------------------CCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 00136889999998764 899999999888877 7889999999999999999985
Q ss_pred ecccccccc-----CC----------------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 LGPLLYHYS-----NM----------------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~gPl~y~~~-----~~----------------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..|...... .. .......+|.+++.++++++||+++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 225 (287)
T 1kpg_A 167 HTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV 225 (287)
T ss_dssp EEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEE
T ss_pred EEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEE
Confidence 433211000 00 001123358999999999999998763
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=148.00 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=88.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+....+.+.++. .+.+|||+|||+|+++..|+++|+.|+|+|+|+.|+..++.......
T Consensus 70 ~~~~~~~~~~~~-----~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------------- 128 (299)
T 3g2m_A 70 SEAREFATRTGP-----VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAP---------------- 128 (299)
T ss_dssp HHHHHHHHHHCC-----CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSC----------------
T ss_pred HHHHHHHHhhCC-----CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcc----------------
Confidence 445555555542 24599999999999999999999999999999999999887432100
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec-ccccCcc--hHHHHHHHHHHhccCCeEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDCAN--NIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidta~--n~~~yl~~I~~~LkpGG~~I 258 (298)
+....++.+..+|+.++.. +++||+|++. ..++... ++..++++++++|||||+++
T Consensus 129 --------------------~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 187 (299)
T 3g2m_A 129 --------------------ADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187 (299)
T ss_dssp --------------------HHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------cccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 0000368899999999765 7899988754 4455443 57899999999999999997
Q ss_pred E
Q psy3185 259 N 259 (298)
Q Consensus 259 n 259 (298)
.
T Consensus 188 ~ 188 (299)
T 3g2m_A 188 L 188 (299)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=141.10 Aligned_cols=143 Identities=15% Similarity=0.252 Sum_probs=104.9
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++++ ..|+|+|+|+.|+..++..+.... +++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----------------------------~~~~ 81 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR----------------------------LPEM 81 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG----------------------------SCHH
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc----------------------------cccc
Confidence 5799999999999999999987 689999999999999887432100 0000
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccccc--ccCCC--
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYH--YSNML-- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~--~~~~~-- 271 (298)
...++.+..+|+.......++||+|++...+++..+ +..+++++.++|||||++|......|. +...+
T Consensus 82 ------~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~ 155 (219)
T 3jwg_A 82 ------QRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEG 155 (219)
T ss_dssp ------HHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT---
T ss_pred ------cCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcc
Confidence 002688999998766656689999999988887774 479999999999999977743211111 10000
Q ss_pred ----CCCccCCCHHHHH----HHHHhCCCEEEE
Q psy3185 272 ----NEDSIEPSYEVVK----QVIQGLGFVYEV 296 (298)
Q Consensus 272 ----~~~~~~ls~eEl~----~~~~~~GF~i~~ 296 (298)
......++.+++. +++++.||++..
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 156 NLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRF 188 (219)
T ss_dssp --GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEE
T ss_pred cccccCceeeecHHHHHHHHHHHHHHCCcEEEE
Confidence 1234457999999 888899999864
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=144.37 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=114.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.+..+++.+...... ..++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++....
T Consensus 22 ~~~~~~~~l~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------------- 82 (263)
T 2yqz_A 22 VAGQIATAMASAVHP---KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA---------------- 82 (263)
T ss_dssp HHHHHHHHHHHHCCC---SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHhhcC---CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----------------
Confidence 455677776542211 1246799999999999999999999999999999999998876320
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.+..+|+.+++..+++||+|++.+.+++.++...++++++++|||||.++
T Consensus 83 ------------------------~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 138 (263)
T 2yqz_A 83 ------------------------GVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138 (263)
T ss_dssp ------------------------TSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred ------------------------ccCCceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEE
Confidence 00137889999998887667899999999999999899999999999999999987
Q ss_pred Ee-c-----c---cc--c----cccCCC-CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 259 NL-G-----P---LL--Y----HYSNML-NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 259 n~-g-----P---l~--y----~~~~~~-~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.. + + +. + .....+ ......++.+++.++++++||+++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 192 (263)
T 2yqz_A 139 EGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRT 192 (263)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcce
Confidence 53 1 1 00 0 000000 0012236789999999999998654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-17 Score=141.10 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=90.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.|..+.+.+.+.++. +.+|||+|||+|.++..+++. ..|+|+|+|+.|+..++......
T Consensus 19 ~~~~~~~~~~~~~~~------~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~-------------- 77 (243)
T 3d2l_A 19 PYPEWVAWVLEQVEP------GKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMET-------------- 77 (243)
T ss_dssp CHHHHHHHHHHHSCT------TCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred cHHHHHHHHHHHcCC------CCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhc--------------
Confidence 355677888887762 479999999999999999999 89999999999999888643210
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCc---chHHHHHHHHHHhccCC
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCA---NNIVSFIETIFNILKPG 254 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta---~n~~~yl~~I~~~LkpG 254 (298)
..++.+..+|+.++.. +++||+|++.+ .+++. +++..++++++++||||
T Consensus 78 --------------------------~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 130 (243)
T 3d2l_A 78 --------------------------NRHVDFWVQDMRELEL-PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDG 130 (243)
T ss_dssp --------------------------TCCCEEEECCGGGCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred --------------------------CCceEEEEcChhhcCC-CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence 0257788899888754 38999998765 55544 67889999999999999
Q ss_pred eEEEE
Q psy3185 255 GIWIN 259 (298)
Q Consensus 255 G~~In 259 (298)
|+++.
T Consensus 131 G~l~~ 135 (243)
T 3d2l_A 131 GKLLF 135 (243)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99974
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=145.22 Aligned_cols=149 Identities=10% Similarity=0.070 Sum_probs=111.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.++. .++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++......
T Consensus 60 ~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------- 118 (302)
T 3hem_A 60 KRKLALDKLNL----EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV----------------- 118 (302)
T ss_dssp HHHHHHHTTCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHcCC----CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 34445555442 35679999999999999999998 999999999999999988743210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc---------chHHHHHHHHHHhcc
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA---------NNIVSFIETIFNILK 252 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta---------~n~~~yl~~I~~~Lk 252 (298)
+-..++.+..+|+.++ +++||+|++...+++. ++...+++++.++||
T Consensus 119 ---------------------~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk 174 (302)
T 3hem_A 119 ---------------------DSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP 174 (302)
T ss_dssp ---------------------CCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC
T ss_pred ---------------------CCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC
Confidence 0013788999999887 6899999999888776 556899999999999
Q ss_pred CCeEEEEecccccccc-----CC----------------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 253 PGGIWINLGPLLYHYS-----NM----------------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 253 pGG~~In~gPl~y~~~-----~~----------------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|||+++...+...... .. ........+.+++.+++++.||+++.
T Consensus 175 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~ 239 (302)
T 3hem_A 175 DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVER 239 (302)
T ss_dssp TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEE
Confidence 9999985433211000 00 00123457899999999999999875
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-18 Score=152.52 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=90.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.|.++.| .+.+|||+|||+|.++..|++.|.+|+|+|+|+.|+..|+.
T Consensus 29 l~~~l~~~~~------~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~----------------------- 79 (257)
T 4hg2_A 29 LFRWLGEVAP------ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR----------------------- 79 (257)
T ss_dssp HHHHHHHHSS------CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-----------------------
T ss_pred HHHHHHHhcC------CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-----------------------
Confidence 6778887776 25699999999999999999999999999999999864321
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.+..+|+.+++.++++||+|+++..+++. +...++++++|+|||||+++.
T Consensus 80 ----------------------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 80 ----------------------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp ----------------------CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------------cCCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEE
Confidence 137889999999998888999999999888876 477899999999999999864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-17 Score=141.31 Aligned_cols=108 Identities=20% Similarity=0.247 Sum_probs=86.8
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+.+.+..+.+ ++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++..+
T Consensus 29 ~~~~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-------------------- 82 (239)
T 3bxo_A 29 DIADLVRSRTP------EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-------------------- 82 (239)
T ss_dssp HHHHHHHHHCT------TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHhcC------CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC--------------------
Confidence 35566666553 3579999999999999999999989999999999999887510
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCc---chHHHHHHHHHHhccCCeEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCA---NNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta---~n~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+..+|+.++.. +++||+|++.+ .+++. +++..++++++++|||||.+
T Consensus 83 ------------------------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 137 (239)
T 3bxo_A 83 ------------------------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVV 137 (239)
T ss_dssp ------------------------TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEE
T ss_pred ------------------------CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEE
Confidence 146678888888754 68999999654 55444 67889999999999999999
Q ss_pred EEe
Q psy3185 258 INL 260 (298)
Q Consensus 258 In~ 260 (298)
+..
T Consensus 138 ~~~ 140 (239)
T 3bxo_A 138 VVE 140 (239)
T ss_dssp EEC
T ss_pred EEE
Confidence 853
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=137.96 Aligned_cols=130 Identities=16% Similarity=0.214 Sum_probs=101.8
Q ss_pred hhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhh
Q psy3185 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCRE 166 (298)
Q Consensus 87 dWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~ 166 (298)
+|+.....+.......+.+.+.+.++ ++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++......
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-- 83 (227)
T 1ve3_A 12 TYTDINSQEYRSRIETLEPLLMKYMK------KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR-- 83 (227)
T ss_dssp TTTCTTSHHHHHHHHHHHHHHHHSCC------SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--
T ss_pred hhhcccHHHHHHHHHHHHHHHHHhcC------CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--
Confidence 34444444444556677788877765 2579999999999999999999999999999999999887643210
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc--ccCcchHHHHH
Q psy3185 167 KNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF--IDCANNIVSFI 244 (298)
Q Consensus 167 ~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff--idta~n~~~yl 244 (298)
..++.+..+|+.++...+++||+|++... +.+.++...++
T Consensus 84 --------------------------------------~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l 125 (227)
T 1ve3_A 84 --------------------------------------ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVF 125 (227)
T ss_dssp --------------------------------------TCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHH
T ss_pred --------------------------------------CCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHH
Confidence 03677899999887656789999998876 66777889999
Q ss_pred HHHHHhccCCeEEEEecc
Q psy3185 245 ETIFNILKPGGIWINLGP 262 (298)
Q Consensus 245 ~~I~~~LkpGG~~In~gP 262 (298)
+.++++|||||.++...|
T Consensus 126 ~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 126 KEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEec
Confidence 999999999999975433
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=136.89 Aligned_cols=129 Identities=15% Similarity=-0.011 Sum_probs=102.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++...
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------------------------------------- 59 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF------------------------------------- 59 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC-------------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhC-------------------------------------
Confidence 4679999999999999999999889999999999999877520
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEP 278 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~l 278 (298)
.++.+..+| ....+++||+|++...+++.++...+++++.++|||||+++...+...... ........+
T Consensus 60 -------~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~ 128 (170)
T 3i9f_A 60 -------DSVITLSDP---KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTG-IGPPLSIRM 128 (170)
T ss_dssp -------TTSEEESSG---GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCS-SSSCGGGCC
T ss_pred -------CCcEEEeCC---CCCCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccc-cCchHhhhc
Confidence 256677777 334578999999999999999999999999999999999986543211111 111234558
Q ss_pred CHHHHHHHHHhCCCEEEEe
Q psy3185 279 SYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 279 s~eEl~~~~~~~GF~i~~~ 297 (298)
+.+++.++++ ||++++.
T Consensus 129 ~~~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 129 DEKDYMGWFS--NFVVEKR 145 (170)
T ss_dssp CHHHHHHHTT--TEEEEEE
T ss_pred CHHHHHHHHh--CcEEEEc
Confidence 9999999998 9998763
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-17 Score=144.52 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=109.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 84 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN-------------------------------- 84 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 5779999999999999999998 678999999999999888743210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc----cccccCC--
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL----LYHYSNM-- 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl----~y~~~~~-- 270 (298)
. ..++.+..+|+.++..++++||+|++...+++.++...+++++.++|||||+++...|- .++....
T Consensus 85 ----~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 157 (276)
T 3mgg_A 85 ----G---IKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKA 157 (276)
T ss_dssp ----T---CCSEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHH
T ss_pred ----C---CCCcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHH
Confidence 0 02688999999988777899999999999999999999999999999999999864321 1110000
Q ss_pred -----------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 271 -----------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 271 -----------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.......++.+++.++++++||+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~ 195 (276)
T 3mgg_A 158 IEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRV 195 (276)
T ss_dssp HHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEE
Confidence 001123356789999999999998753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=140.37 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=107.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+...+.+.++ .++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..
T Consensus 21 ~~~~l~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~---------------------- 73 (230)
T 3cc8_A 21 VNPNLLKHIK-----KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEK---------------------- 73 (230)
T ss_dssp CCHHHHTTCC-----TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTT----------------------
T ss_pred HHHHHHHHhc-----cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh----------------------
Confidence 4455566554 2467999999999999999999999999999999999876531
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccc--cccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQ--VYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~--~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...+..+|+.+ ....+++||+|++...+++.++...+++++.++|||||+++..
T Consensus 74 ------------------------~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 74 ------------------------LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp ------------------------SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred ------------------------CCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 01245556554 2234689999999999988889999999999999999999865
Q ss_pred cccc-------------ccccCC---CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 261 GPLL-------------YHYSNM---LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 261 gPl~-------------y~~~~~---~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.|.. |.+... .......++.+++.++++++||+++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 182 (230)
T 3cc8_A 130 IPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV 182 (230)
T ss_dssp EECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred eCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence 5431 111100 011224479999999999999998753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=138.23 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=108.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.|...++.+....| +.+|||+|||+|.++..+++. +|+|+|+.|+..++..
T Consensus 34 ~~~~~~~~l~~~~~-------~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~------------------ 84 (219)
T 1vlm_A 34 AYLSELQAVKCLLP-------EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR------------------ 84 (219)
T ss_dssp HHHHHHHHHHHHCC-------SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT------------------
T ss_pred hHHHHHHHHHHhCC-------CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc------------------
Confidence 34456667776655 469999999999999999887 9999999999887641
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
++.+..+|+.++...+++||+|++...+++.++...+++++.++|||||.++
T Consensus 85 ----------------------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 136 (219)
T 1vlm_A 85 ----------------------------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 136 (219)
T ss_dssp ----------------------------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------------CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEE
Confidence 3446777777766567899999999999888899999999999999999998
Q ss_pred Eecccccc-------cc-C-C-CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 259 NLGPLLYH-------YS-N-M-LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 259 n~gPl~y~-------~~-~-~-~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...|.... .. . . .......++.+++.++++++||+++.
T Consensus 137 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 137 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp EEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 65432110 00 0 0 01123447999999999999999875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=144.53 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=111.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.++. .++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++......
T Consensus 78 ~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------- 136 (318)
T 2fk8_A 78 KVDLNLDKLDL----KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI----------------- 136 (318)
T ss_dssp HHHHHHTTSCC----CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS-----------------
T ss_pred HHHHHHHhcCC----CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 45555555542 34679999999999999999988 999999999999999988743210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.+++ ++||+|++...+++. +++..+++++.++|||||.++.
T Consensus 137 ---------------------~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 137 ---------------------DTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp ---------------------CCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred ---------------------CCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 00136888999998763 789999999888877 7899999999999999999985
Q ss_pred eccccccccC---------------------CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPLLYHYSN---------------------MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl~y~~~~---------------------~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|....... .........+.+++.++++++||+++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~ 250 (318)
T 2fk8_A 193 QSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPE 250 (318)
T ss_dssp EEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCC
T ss_pred EEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEE
Confidence 4432111000 000112346899999999999999764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-17 Score=138.69 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=108.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHH-HHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRL-AFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grl-a~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
+..+++.+... + ++.+|||+|||+|.+ ...++..|++|+|+|+|+.|+..++......
T Consensus 11 ~~~~~~~~~~~-~------~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------- 69 (209)
T 2p8j_A 11 LYRFLKYCNES-N------LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------------- 69 (209)
T ss_dssp HHHHHHHHHHS-S------SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcc-C------CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--------------
Confidence 34456655543 2 357999999999998 5566778999999999999999887643210
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~ 256 (298)
..++.+..+|+.+++.++++||+|++...+++. +++..++++++++|||||+
T Consensus 70 --------------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 123 (209)
T 2p8j_A 70 --------------------------NFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123 (209)
T ss_dssp --------------------------TCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred --------------------------CCceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence 024667888888876667899999987766665 7889999999999999999
Q ss_pred EEEeccc----cccc---------cCCC-CCCc--cCCCHHHHHHHHHhCCCEEEEe
Q psy3185 257 WINLGPL----LYHY---------SNML-NEDS--IEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 257 ~In~gPl----~y~~---------~~~~-~~~~--~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
++...+- .|.. .... ..+. ..++.+|+.+++...||....+
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 124 ACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp EEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred EEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 9743211 1110 0000 0111 3479999999999999987653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=150.31 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=109.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+.+.+.+.++. .++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++.
T Consensus 21 ~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~---------------------- 74 (261)
T 3ege_A 21 RIVNAIINLLNL----PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVV---------------------- 74 (261)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCC----------------------
T ss_pred HHHHHHHHHhCC----CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHh----------------------
Confidence 466667666653 246899999999999999999999999999999999875431
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
..++.+..+|+.+++.++++||+|++.+.+++.++...++++++++|| ||.++...
T Consensus 75 -----------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 75 -----------------------HPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp -----------------------CTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred -----------------------ccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEE
Confidence 026788999998887677999999999999988999999999999999 99665432
Q ss_pred cc------cccccCCC----CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PL------LYHYSNML----NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl------~y~~~~~~----~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+- .|.....+ .......+.+++. +++++||+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~ 174 (261)
T 3ege_A 131 FDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVE 174 (261)
T ss_dssp ECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEE
T ss_pred cCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCcee
Confidence 21 11100000 0012235678899 99999997765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=142.44 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=85.5
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..|++.|..|+|+|+|+.|+..++.........
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------------------------- 105 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE-------------------------------- 105 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS--------------------------------
T ss_pred CCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccc--------------------------------
Confidence 579999999999999999999999999999999999887632110000
Q ss_pred CCCCCCCCeeEEeccccccc---cCCCceeEEEec-ccccCcch-------HHHHHHHHHHhccCCeEEEE
Q psy3185 200 SDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATC-FFIDCANN-------IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~-ffidta~n-------~~~yl~~I~~~LkpGG~~In 259 (298)
+...++.+..+|+.++. ..+++||+|++. ..+++..+ ...++++++++|||||+++.
T Consensus 106 ---~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 106 ---PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp ---HHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---cccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 00135778889988876 567899999997 77777777 99999999999999999984
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=132.62 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=99.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++...
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------------------------------------- 88 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------------------------------------- 88 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-------------------------------------
Confidence 3679999999999999999999999999999999998877521
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEec-ccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.++.+..+|+.++..++++||+|++. .+++.. ++...+++.+.++|||||+++...|. .
T Consensus 89 -------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~-----------~ 150 (195)
T 3cgg_A 89 -------PEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA-----------G 150 (195)
T ss_dssp -------TTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET-----------T
T ss_pred -------CCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC-----------C
Confidence 13567788887765556899999986 445433 56789999999999999999853221 1
Q ss_pred cCCCHHHHHHHHHhCCCEEEEe
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..++.+++.+++++.||+++..
T Consensus 151 ~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 151 RGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp SSCCHHHHHHHHHHHTEEEEEE
T ss_pred CCcCHHHHHHHHHHcCCEEeee
Confidence 2367999999999999998753
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=141.95 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=113.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+++.+.+.+... .++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++.....
T Consensus 9 ~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------- 69 (284)
T 3gu3_A 9 YVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---------------- 69 (284)
T ss_dssp HHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS----------------
T ss_pred HHHHHHHHHhcc---CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh----------------
Confidence 445555544321 35689999999999999999998 68999999999999988763221
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.+..+|+.+++. +++||+|++...+++.++...++++++++|||||+++.
T Consensus 70 ----------------------~~--~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 124 (284)
T 3gu3_A 70 ----------------------LP--YDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 124 (284)
T ss_dssp ----------------------SS--SEEEEEESCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEE
T ss_pred ----------------------cC--CceEEEEcchhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEE
Confidence 01 278899999998765 57999999999999999999999999999999999986
Q ss_pred eccc------cccccCCC-------------------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 LGPL------LYHYSNML-------------------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~gPl------~y~~~~~~-------------------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..|- .+...+.. .......+.+++.++++++||+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~ 187 (284)
T 3gu3_A 125 FEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIEC 187 (284)
T ss_dssp EECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEE
T ss_pred EecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEE
Confidence 6554 11111000 00112345678999999999998753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-17 Score=155.31 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=111.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
...+.+.+.+.++. .++.+|||+|||+|.++..++++|+.|+|+|+|+.|+..++.. . . +
T Consensus 92 ~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~---~--~------~----- 151 (416)
T 4e2x_A 92 FAMLARDFLATELT----GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK---G--I------R----- 151 (416)
T ss_dssp HHHHHHHHHHTTTC----SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT---T--C------C-----
T ss_pred HHHHHHHHHHHhCC----CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc---C--C------C-----
Confidence 34466666666653 2467999999999999999999999999999999999887641 0 0 0
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ....+..++...++..+++||+|++...+++.+++..++++++++|||||+++.
T Consensus 152 ----------------~---------~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 206 (416)
T 4e2x_A 152 ----------------V---------RTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVF 206 (416)
T ss_dssp ----------------E---------ECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------c---------ceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 0 001122344444444568999999999999999999999999999999999986
Q ss_pred eccccc------cccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 LGPLLY------HYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~gPl~y------~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..|..- .+.....++...+|.+++..+++++||+++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 207 EDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp EEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred EeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 544210 01111112344589999999999999998753
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=142.66 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=103.4
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..++++|++|+|+|+|+.|+..++......
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~----------------------------------- 165 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKE----------------------------------- 165 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------------------------
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHc-----------------------------------
Confidence 579999999999999999999999999999999999888743210
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
..++.+..+|+.+... +++||+|++...+++. +++..+++.+.++|||||+++.+.+..-.....+......
T Consensus 166 -----~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 239 (286)
T 3m70_A 166 -----NLNISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFT 239 (286)
T ss_dssp -----TCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCC
T ss_pred -----CCceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCcccc
Confidence 0267889999988765 7899999998877744 6678999999999999999765433211111111234567
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
++.+++.+++.. |+++.
T Consensus 240 ~~~~~l~~~~~~--~~~~~ 256 (286)
T 3m70_A 240 FAENELKEYYKD--WEFLE 256 (286)
T ss_dssp BCTTHHHHHTTT--SEEEE
T ss_pred CCHHHHHHHhcC--CEEEE
Confidence 889999999855 88764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=150.85 Aligned_cols=146 Identities=15% Similarity=0.099 Sum_probs=107.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..|++. +..|+|+|+|+.|+..++..+...... +.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------------------~~ 136 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK--------------------------FF 136 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHH--------------------------HH
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhh--------------------------cc
Confidence 5679999999999999999986 569999999999999988743221000 00
Q ss_pred CCCCCCCCCCCCeeEEecccccc------ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccc--
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQV------YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHY-- 267 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~------~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~-- 267 (298)
. . ....++.+..+|+.++ ..++++||+|++...+++.++...++++++++|||||+++...+..-..
T Consensus 137 g----~-~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 211 (383)
T 4fsd_A 137 G----S-PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLS 211 (383)
T ss_dssp S----S-TTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCC
T ss_pred c----c-cCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccC
Confidence 0 0 0013788999999887 5567899999999999988999999999999999999988543211000
Q ss_pred ---cCC----CCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 268 ---SNM----LNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 268 ---~~~----~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
... .....-.++.+++.++++++||+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 246 (383)
T 4fsd_A 212 EAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDV 246 (383)
T ss_dssp HHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCE
T ss_pred HhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceE
Confidence 000 0012334788999999999999765
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=143.82 Aligned_cols=185 Identities=15% Similarity=0.238 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHH----HHHc--CCeE
Q psy3185 71 STDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFE----IARR--GYVC 144 (298)
Q Consensus 71 ~~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~e----la~~--G~~v 144 (298)
..|.++..+.+..+... +. ....+...+...+..+...++. ..++.+|||+|||+|.++.. ++.+ +..|
T Consensus 9 ~~d~~~y~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~l~~~~~---~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v 83 (292)
T 2aot_A 9 FSDHGKYVESFRRFLNH-ST-EHQCMQEFMDKKLPGIIGRIGD---TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI 83 (292)
T ss_dssp GGCHHHHHHHHHHHHTT-BS-HHHHHHHHHHHTHHHHSSSTTT---TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEE
T ss_pred cccHHHHHHHHHHHHHh-cc-HHHHHHHHHHHhchhHHhhccC---CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCcee
Confidence 36788888888877654 21 1223333333333333222221 13467999999999976653 3333 3433
Q ss_pred --EEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc---
Q psy3185 145 --QGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY--- 219 (298)
Q Consensus 145 --~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~--- 219 (298)
+|+|+|+.|+..++....... . .....+.+..++..++.
T Consensus 84 ~~~~vD~S~~ml~~a~~~~~~~~------------------------------~------~~~v~~~~~~~~~~~~~~~~ 127 (292)
T 2aot_A 84 NNEVVEPSAEQIAKYKELVAKTS------------------------------N------LENVKFAWHKETSSEYQSRM 127 (292)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCS------------------------------S------CTTEEEEEECSCHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcc------------------------------C------CCcceEEEEecchhhhhhhh
Confidence 999999999998876432100 0 00113445566665543
Q ss_pred ---cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc-----c--cccc--cCCCC-CCccCCCHHHHHHH
Q psy3185 220 ---VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP-----L--LYHY--SNMLN-EDSIEPSYEVVKQV 286 (298)
Q Consensus 220 ---~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP-----l--~y~~--~~~~~-~~~~~ls~eEl~~~ 286 (298)
.++++||+|++.+.+++.+|+...+++|+++|||||.++...+ . +|.. ...+. .....++.+++.++
T Consensus 128 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQM 207 (292)
T ss_dssp HTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHH
T ss_pred ccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHH
Confidence 2468999999999999999999999999999999999985321 1 1111 10111 12334789999999
Q ss_pred HHhCCCEEEE
Q psy3185 287 IQGLGFVYEV 296 (298)
Q Consensus 287 ~~~~GF~i~~ 296 (298)
++++||+++.
T Consensus 208 l~~aGf~~~~ 217 (292)
T 2aot_A 208 LDNLGLKYEC 217 (292)
T ss_dssp HHHHTCCEEE
T ss_pred HHHCCCceEE
Confidence 9999998875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=144.86 Aligned_cols=146 Identities=13% Similarity=0.052 Sum_probs=95.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|+.+..+++.| ..|+|+|+|+.|+..|+....... . .+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~-~---~~------------------------- 98 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN-S---GI------------------------- 98 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC-C------------------------------
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcc-c---cc-------------------------
Confidence 46799999999998777766664 789999999999999987432210 0 00
Q ss_pred CCCCCCCCCCeeEEeccc------cccc--cCCCceeEEEecccccCc---chHHHHHHHHHHhccCCeEEEEeccc---
Q psy3185 198 NTSDYNDDCDFSMAAGDF------LQVY--VHPNKWDCVATCFFIDCA---NNIVSFIETIFNILKPGGIWINLGPL--- 263 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf------~~~~--~~~~~fD~V~t~ffidta---~n~~~yl~~I~~~LkpGG~~In~gPl--- 263 (298)
. ....++.+.++|. .++. .++++||+|++.+.++.+ +++..++++++++|||||++|...|-
T Consensus 99 ~----~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 99 K----TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp ------CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred c----ccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 0 0001233444444 2221 245799999988777532 46789999999999999999854431
Q ss_pred -ccccc--------C--------------------C-CC---CC--ccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 264 -LYHYS--------N--------------------M-LN---ED--SIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 264 -~y~~~--------~--------------------~-~~---~~--~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+... + . +. .. ..-.++++|.++++++||+++..
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~ 243 (302)
T 2vdw_A 175 LSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDN 243 (302)
T ss_dssp HTTCCSCEEEECCSSSCTTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCcccccccccccceeeeccccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEe
Confidence 11100 0 0 00 00 11357899999999999999753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=134.30 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=86.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++....
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~------------------------------------ 94 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTK------------------------------------ 94 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTT------------------------------------
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcc------------------------------------
Confidence 46799999999999999999999999999999999998876211
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchH---HHHHHHHHHhccCCeEEEEecc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI---VSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~---~~yl~~I~~~LkpGG~~In~gP 262 (298)
...++.+..+|+.++. .+++||+|++...+++.++. ..+++++.++|||||+++...|
T Consensus 95 -----~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 95 -----RWSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp -----TCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -----cCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 0137889999998886 57899999999888776665 5789999999999999985443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-16 Score=132.41 Aligned_cols=124 Identities=16% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+ |+ +|+|+|+|+.|+..++...
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------------------------------------ 76 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------------------------------------ 76 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------------------------------------
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------------------------------------
Confidence 3679999999999999988 88 9999999999999877511
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc---cc-------c
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL---YH-------Y 267 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~---y~-------~ 267 (298)
.++.+..+|+.+++..+++||+|++...+++.++...++++++++|||||.++...|.. |. .
T Consensus 77 --------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 148 (211)
T 2gs9_A 77 --------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGE 148 (211)
T ss_dssp --------TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHH
T ss_pred --------CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhh
Confidence 14567788888776667899999999999999999999999999999999998654321 10 0
Q ss_pred cCCCC-CCccCCCHHHHHHHHHhCC
Q psy3185 268 SNMLN-EDSIEPSYEVVKQVIQGLG 291 (298)
Q Consensus 268 ~~~~~-~~~~~ls~eEl~~~~~~~G 291 (298)
..... .....+|.+++.++++ |
T Consensus 149 ~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 149 KGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp TTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred ccCccccccccCCHHHHHHHhc--C
Confidence 00000 1234589999999997 7
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=132.97 Aligned_cols=100 Identities=24% Similarity=0.400 Sum_probs=81.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..+++.|+.|+|+|+|+.|+..++......
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~---------------------------------- 86 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKER---------------------------------- 86 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999999888633210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.+..+|+.++.. +++||+|++.+ ...+.+++..+++.++++|||||.+|.
T Consensus 87 ------~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 87 ------NLKIEFLQGDVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp ------TCCCEEEESCGGGCCC-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCceEEEECChhhccc-CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 0257789999988754 47899998643 222446788999999999999999873
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=138.70 Aligned_cols=140 Identities=9% Similarity=0.030 Sum_probs=102.4
Q ss_pred CCCeEEEecccCcHHHHHHHH--c-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR--R-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~--~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+|. . +.+|+|+|+|+.|+..++......
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------------------- 166 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH------------------------------- 166 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 467999999999999999962 2 578999999999999988733210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH---HHHHHHHHhccCCeEEEEeccc-------cc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV---SFIETIFNILKPGGIWINLGPL-------LY 265 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~---~yl~~I~~~LkpGG~~In~gPl-------~y 265 (298)
....++.+..+|+.++..+ ++||+|++...+++.++.. .++++++++|||||+++..... .+
T Consensus 167 -------~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 238 (305)
T 3ocj_A 167 -------ALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS 238 (305)
T ss_dssp -------TTGGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC
T ss_pred -------CCCCceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc
Confidence 0013588999999998765 9999999987666555544 4899999999999999853311 11
Q ss_pred ccc--CC----------------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 HYS--NM----------------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 ~~~--~~----------------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+. .. .......++.+++.++++++||+++..
T Consensus 239 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 288 (305)
T 3ocj_A 239 PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRF 288 (305)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEE
Confidence 110 00 000112379999999999999998753
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-16 Score=136.34 Aligned_cols=135 Identities=9% Similarity=-0.127 Sum_probs=101.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..|++.|.+|+|+|+|+.|+..++....
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~------------------------------------ 99 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT------------------------------------ 99 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC------------------------------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc------------------------------------
Confidence 46799999999999999999999999999999999998876210
Q ss_pred CCCCCCCCCeeEEeccccccccCC-----CceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEecccc----c--
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHP-----NKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLL----Y-- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~-----~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~----y-- 265 (298)
..++.+..+|+.++.... ..||+|++...++..+ +...++++++++|||||+++...+.. +
T Consensus 100 ------~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 173 (245)
T 3ggd_A 100 ------AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN 173 (245)
T ss_dssp ------CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHH
T ss_pred ------ccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHH
Confidence 136788999988764321 3489999988888777 88999999999999999876432210 0
Q ss_pred c---c-cCC---------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 H---Y-SNM---------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 ~---~-~~~---------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+ . ... .......++.+|+.+++ .||+++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~ 216 (245)
T 3ggd_A 174 SLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQ 216 (245)
T ss_dssp HHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEE
T ss_pred HHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEec
Confidence 0 0 000 01122347999999999 89999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=143.36 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=104.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhc------------------------ccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREK------------------------NVYKI 172 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~------------------------~~~~i 172 (298)
++.+|||+|||+|.++..||+. +..|+|+|+|+.|+..|+..+...... ....-
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 3679999999999999999998 679999999999999998743221000 00000
Q ss_pred ccccccccccccccccccccccCCCCCC---CCCCCCCeeEEeccccccc-----cCCCceeEEEecccccCc------c
Q psy3185 173 YPWVQQTDNNILTHHQTMAVTFPDINTS---DYNDDCDFSMAAGDFLQVY-----VHPNKWDCVATCFFIDCA------N 238 (298)
Q Consensus 173 ~p~~~~~s~~~~~~~~~r~~~ipd~~~~---~~~~~~~~~~~~gDf~~~~-----~~~~~fD~V~t~ffidta------~ 238 (298)
+|... .....++..|..... ......++.+..+|+.... ...++||+|++...+.+. .
T Consensus 126 ~p~~~--------~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 126 FPASL--------TASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred ccchh--------hhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 11100 001111111111100 0001148999999997653 256899999988776444 3
Q ss_pred hHHHHHHHHHHhccCCeEEEEecccccccc-CCC--------CCCccCCCHHHHHHHHHh--CCCEEEE
Q psy3185 239 NIVSFIETIFNILKPGGIWINLGPLLYHYS-NML--------NEDSIEPSYEVVKQVIQG--LGFVYEV 296 (298)
Q Consensus 239 n~~~yl~~I~~~LkpGG~~In~gPl~y~~~-~~~--------~~~~~~ls~eEl~~~~~~--~GF~i~~ 296 (298)
++..+++.++++|||||++|. .|--|... ... ....+.+..+++..++.+ +||+.+.
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil-~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~ 265 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVL-EPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYE 265 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE-ECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEE-ecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEE
Confidence 788999999999999999984 33222211 000 013466789999999999 9996543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=138.34 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=102.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.+++..+....+ .++.+|||+|||+|.++..+++.+. .|+|+|+|+.|+..++.....
T Consensus 47 ~~~~~~l~~~~~-----~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~---------------- 105 (236)
T 1zx0_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR---------------- 105 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG----------------
T ss_pred HHHHHHHHhhcC-----CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHh----------------
Confidence 346666665544 2467999999999999999998877 799999999999998863211
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccc--ccCCCceeEEEe-ccccc----CcchHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV--YVHPNKWDCVAT-CFFID----CANNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~--~~~~~~fD~V~t-~ffid----ta~n~~~yl~~I~~~Lk 252 (298)
...++.++.+|+.++ ...+++||+|++ .|.+. +..+...++++++++||
T Consensus 106 ------------------------~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lk 161 (236)
T 1zx0_A 106 ------------------------QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK 161 (236)
T ss_dssp ------------------------CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE
T ss_pred ------------------------cCCCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcC
Confidence 013688999999887 566789999998 55431 23445578999999999
Q ss_pred CCeEEEEeccccccccCCCC-CCccCCCHHHHHHHHHhCCCE
Q psy3185 253 PGGIWINLGPLLYHYSNMLN-EDSIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~-~~~~~ls~eEl~~~~~~~GF~ 293 (298)
|||+++.+....+....... ........++....+.+.||.
T Consensus 162 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 203 (236)
T 1zx0_A 162 PGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFR 203 (236)
T ss_dssp EEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCC
T ss_pred CCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCC
Confidence 99999854322121000000 011112235566778899997
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=139.92 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=110.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH---cCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR---RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~---~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.+.+.|..+.+ .++.+|||+|||+|.++..|++ .+..|+|+|+|+.|+..++.......
T Consensus 24 ~~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------- 85 (299)
T 3g5t_A 24 DFYKMIDEYHD-----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP------------- 85 (299)
T ss_dssp HHHHHHHHHCC-----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHhc-----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-------------
Confidence 46677777654 2478999999999999999994 57889999999999999887433200
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC------CceeEEEecccccCcchHHHHHHHHHHhcc
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP------NKWDCVATCFFIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~------~~fD~V~t~ffidta~n~~~yl~~I~~~Lk 252 (298)
....++.+..+|+.++...+ ++||+|++...+++. ++..+++++.++||
T Consensus 86 ------------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk 140 (299)
T 3g5t_A 86 ------------------------DTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLR 140 (299)
T ss_dssp -------------------------CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE
T ss_pred ------------------------CCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC
Confidence 00147889999998877665 899999999999888 99999999999999
Q ss_pred CCeEEEEe---cccc------------ccccCCCCCCccC-CCHHHHHHHHHhCCC
Q psy3185 253 PGGIWINL---GPLL------------YHYSNMLNEDSIE-PSYEVVKQVIQGLGF 292 (298)
Q Consensus 253 pGG~~In~---gPl~------------y~~~~~~~~~~~~-ls~eEl~~~~~~~GF 292 (298)
|||.++.. .|.. |.+....-.+... ...+.+.++++..||
T Consensus 141 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gf 196 (299)
T 3g5t_A 141 KDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196 (299)
T ss_dssp EEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCC
T ss_pred CCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhccCC
Confidence 99998742 2221 1111000112233 567788999999999
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=134.80 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~ 151 (298)
.+.....+.+...+..|.... .....+..+.+.+...++ ++.+|||+|||+|.++..+++.|.+|+|+|+|+
T Consensus 15 ~~~~~~~~~~a~~Yd~~~~~~--~~~~~~~~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~ 86 (260)
T 2avn_A 15 LRSWEFYDRIARAYDSMYETP--KWKLYHRLIGSFLEEYLK------NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK 86 (260)
T ss_dssp CCHHHHHHHHHHHHGGGGCSH--HHHHHHHHHHHHHHHHCC------SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH
T ss_pred hhhcchhhHHHHHHHHhcccc--chhHHHHHHHHHHHHhcC------CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH
Confidence 344555556666666655321 112234456667777665 357999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 152 FMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 152 ~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
.|+..++... . .+ +..+|+.++...+++||+|++.
T Consensus 87 ~~l~~a~~~~-----------------------------------------~--~~--~~~~d~~~~~~~~~~fD~v~~~ 121 (260)
T 2avn_A 87 EMLEVAREKG-----------------------------------------V--KN--VVEAKAEDLPFPSGAFEAVLAL 121 (260)
T ss_dssp HHHHHHHHHT-----------------------------------------C--SC--EEECCTTSCCSCTTCEEEEEEC
T ss_pred HHHHHHHhhc-----------------------------------------C--CC--EEECcHHHCCCCCCCEEEEEEc
Confidence 9999887521 0 11 5677777776667899999987
Q ss_pred cc-ccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 232 FF-IDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 232 ff-idta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.. .+..+++..+++++.++|||||.++...|
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 122 GDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 63 44446689999999999999999985433
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-15 Score=125.78 Aligned_cols=134 Identities=14% Similarity=0.013 Sum_probs=102.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+...+...++. .++.+|||+|||+|.++..+|+.+ ..|+|+|+|+.|+..++......
T Consensus 28 i~~~~l~~l~~----~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------- 87 (204)
T 3e05_A 28 VRAVTLSKLRL----QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF---------------- 87 (204)
T ss_dssp HHHHHHHHTTC----CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHcCC----CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------
Confidence 43444444442 346799999999999999999997 78999999999999988743220
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.+ .++.+..+|+.+.....++||+|++...+. ++..+++.+.++|||||.++..
T Consensus 88 --------------------~~---~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 88 --------------------VA---RNVTLVEAFAPEGLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp --------------------TC---TTEEEEECCTTTTCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEE
T ss_pred --------------------CC---CcEEEEeCChhhhhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEE
Confidence 00 367888999877655557899999876554 6789999999999999999864
Q ss_pred ccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 261 GPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 261 gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
.+.. -+.+++.+++++.||.+.
T Consensus 142 ~~~~-------------~~~~~~~~~l~~~g~~~~ 163 (204)
T 3e05_A 142 AVTL-------------DTLTKAVEFLEDHGYMVE 163 (204)
T ss_dssp ECBH-------------HHHHHHHHHHHHTTCEEE
T ss_pred eccc-------------ccHHHHHHHHHHCCCcee
Confidence 4321 136889999999999643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=139.85 Aligned_cols=149 Identities=14% Similarity=0.035 Sum_probs=103.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.|+.+.+.+..+ +++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|+..|+.....
T Consensus 47 ~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~---------------- 105 (236)
T 3orh_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR---------------- 105 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGG----------------
T ss_pred HHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhh----------------
Confidence 467777777665 357899999999999999999874 6799999999999998873211
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccc--cCCCceeEEE-----ecccccCcchHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVA-----TCFFIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~-----t~ffidta~n~~~yl~~I~~~Lk 252 (298)
...++.+..||+.++. .++++||+|+ +.+.+.+..+...++++++|+||
T Consensus 106 ------------------------~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLk 161 (236)
T 3orh_A 106 ------------------------QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK 161 (236)
T ss_dssp ------------------------CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE
T ss_pred ------------------------CCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeC
Confidence 0135677888876653 3568899885 34556677888999999999999
Q ss_pred CCeEEEEeccccccccCCCC-CCccCCCHHHHHHHHHhCCCEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLN-EDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~-~~~~~ls~eEl~~~~~~~GF~i 294 (298)
|||+++.+............ ........+.....+.++||++
T Consensus 162 PGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~ 204 (236)
T 3orh_A 162 PGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp EEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCG
T ss_pred CCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeE
Confidence 99999854322111100000 0111233455666777889974
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-16 Score=136.33 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=92.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++.. .
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~---------------------------------- 90 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---A---------------------------------- 90 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---C----------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---C----------------------------------
Confidence 367999999999999999999999999999999999988751 0
Q ss_pred CCCCCCCCCeeEEecccc-ccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCcc
Q psy3185 199 TSDYNDDCDFSMAAGDFL-QVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSI 276 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~-~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~ 276 (298)
.++.+..+|+. .++.. +++||+|++. .++..++++++++|||||.++..+ -
T Consensus 91 -------~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~--------------~ 143 (226)
T 3m33_A 91 -------PHADVYEWNGKGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG--------------P 143 (226)
T ss_dssp -------TTSEEEECCSCSSCCTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE--------------S
T ss_pred -------CCceEEEcchhhccCCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC--------------C
Confidence 25678888884 45445 6899999987 355678999999999999998221 1
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~~ 296 (298)
..+.+++...+.+.||++..
T Consensus 144 ~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 144 RLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp SSCCTHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEE
Confidence 23467899999999999864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=130.89 Aligned_cols=116 Identities=16% Similarity=0.270 Sum_probs=92.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
+..+.+.|.++++ ++.+|||+|||+|.++..+++.|+ .|+|+|+|+.|+..++.....
T Consensus 29 ~~~~~~~l~~~~~------~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------------- 87 (215)
T 2pxx_A 29 FSSFRALLEPELR------PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------------- 87 (215)
T ss_dssp HHHHHHHHGGGCC------TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---------------
T ss_pred HHHHHHHHHHhcC------CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---------------
Confidence 3456677776654 367999999999999999999998 799999999999988762110
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC---------------cchHHHH
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC---------------ANNIVSF 243 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt---------------a~n~~~y 243 (298)
..++.+..+|+.++...+++||+|++...++. ..++..+
T Consensus 88 --------------------------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (215)
T 2pxx_A 88 --------------------------VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQV 141 (215)
T ss_dssp --------------------------CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHH
T ss_pred --------------------------CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHH
Confidence 13677888998887666789999998766543 3467899
Q ss_pred HHHHHHhccCCeEEEEecc
Q psy3185 244 IETIFNILKPGGIWINLGP 262 (298)
Q Consensus 244 l~~I~~~LkpGG~~In~gP 262 (298)
++++.++|||||.++...|
T Consensus 142 l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 142 LSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHhCcCCCEEEEEeC
Confidence 9999999999999986543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=128.82 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.+++.+....+ ++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++..+...
T Consensus 49 ~~~~~l~~~~~------~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------- 106 (205)
T 3grz_A 49 LAMLGIERAMV------KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN---------------- 106 (205)
T ss_dssp HHHHHHHHHCS------SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHhcc------CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 36666666554 367999999999999999999987 8999999999999888743210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
. ..++.+..+|+.+.. +++||+|++...++ .+..+++++.++|||||+++..
T Consensus 107 ----------------------~-~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 107 ----------------------G-IYDIALQKTSLLADV--DGKFDLIVANILAE---ILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp ----------------------T-CCCCEEEESSTTTTC--CSCEEEEEEESCHH---HHHHHGGGSGGGEEEEEEEEEE
T ss_pred ----------------------C-CCceEEEeccccccC--CCCceEEEECCcHH---HHHHHHHHHHHhcCCCCEEEEE
Confidence 0 023788999987753 58999999886553 4678899999999999999854
Q ss_pred ccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 261 GPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 261 gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
++.. -+.+++.+++++.||+++.
T Consensus 159 ~~~~-------------~~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 159 GIDY-------------LQLPKIEQALAENSFQIDL 181 (205)
T ss_dssp EEEG-------------GGHHHHHHHHHHTTEEEEE
T ss_pred ecCc-------------ccHHHHHHHHHHcCCceEE
Confidence 3211 1378999999999999875
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=130.93 Aligned_cols=141 Identities=11% Similarity=-0.021 Sum_probs=102.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHH------HHHHHHHHHhhhhhccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLF------MLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQT 189 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~------Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~ 189 (298)
++.+|||+|||+|.++..++++ | ..|+|+|+|+. |+..++..+...
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~------------------------- 97 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG------------------------- 97 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-------------------------
Confidence 4679999999999999999998 4 78999999997 998887643210
Q ss_pred cccccCCCCCCCCCCCCCeeEEecc-cc--ccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc--
Q psy3185 190 MAVTFPDINTSDYNDDCDFSMAAGD-FL--QVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL-- 264 (298)
Q Consensus 190 r~~~ipd~~~~~~~~~~~~~~~~gD-f~--~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~-- 264 (298)
....++.+..+| +. .++..+++||+|++...+++.++...+++.+.++++|||+++...+..
T Consensus 98 -------------~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 98 -------------PLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp -------------TTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred -------------CCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 001367788887 42 333456899999999988888888888888888888899987532110
Q ss_pred -----------------cc-c-cCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 265 -----------------YH-Y-SNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 265 -----------------y~-~-~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|. . ..........+|.+++.++++++||+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~ 216 (275)
T 3bkx_A 165 TALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAG 216 (275)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEEC
T ss_pred CchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEE
Confidence 00 0 000111223589999999999999999864
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=125.87 Aligned_cols=122 Identities=12% Similarity=-0.013 Sum_probs=95.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+|++|..|+|+|+|+.|+..++......
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 100 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTY---------------------------------- 100 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------------------------------
Confidence 4679999999999999999999999999999999999988743210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEP 278 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~l 278 (298)
.+ ..++.+..+|+.+.....++||+|++...+ +.. +++.+.++|||||.++...+.. -
T Consensus 101 --g~--~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~-------------~ 158 (204)
T 3njr_A 101 --GL--SPRMRAVQGTAPAALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL-------------E 158 (204)
T ss_dssp --TC--TTTEEEEESCTTGGGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH-------------H
T ss_pred --CC--CCCEEEEeCchhhhcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc-------------c
Confidence 01 126889999998854445689999876533 455 9999999999999998543321 1
Q ss_pred CHHHHHHHHHhCCCEEEE
Q psy3185 279 SYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 279 s~eEl~~~~~~~GF~i~~ 296 (298)
+.+++.+++++.||++..
T Consensus 159 ~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 159 SETLLTQLHARHGGQLLR 176 (204)
T ss_dssp HHHHHHHHHHHHCSEEEE
T ss_pred cHHHHHHHHHhCCCcEEE
Confidence 267888899999998865
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-15 Score=134.81 Aligned_cols=147 Identities=10% Similarity=0.134 Sum_probs=104.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++......... . +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------------------~-~- 85 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR--------------------------R-D- 85 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS--------------------------S-C-
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc--------------------------c-c-
Confidence 3679999999999999999976 568999999999999888743321000 0 0
Q ss_pred CCCCCCCCCCeeEEeccccccc----c--CCCceeEEEecccccCc----chHHHHHHHHHHhccCCeEEEEecccc---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY----V--HPNKWDCVATCFFIDCA----NNIVSFIETIFNILKPGGIWINLGPLL--- 264 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~----~--~~~~fD~V~t~ffidta----~n~~~yl~~I~~~LkpGG~~In~gPl~--- 264 (298)
. ....++.+..+|+.+.. . .+++||+|++.+.+++. ++...++++++++|||||+++...|-.
T Consensus 86 -~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l 161 (313)
T 3bgv_A 86 -S---EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFEL 161 (313)
T ss_dssp -C----CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred -c---cccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHH
Confidence 0 01136788999988764 2 24699999999988765 556799999999999999998543310
Q ss_pred -----------cc-------ccCCC-----------------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 265 -----------YH-------YSNML-----------------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 265 -----------y~-------~~~~~-----------------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
++ +.+.. ..+...++.+++.+++++.||+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~ 229 (313)
T 3bgv_A 162 IRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYK 229 (313)
T ss_dssp HHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEE
T ss_pred HHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEe
Confidence 11 11100 01122378999999999999999863
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=130.96 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=94.4
Q ss_pred CCCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|. .+..|+|+|+|+.|+..++......
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 117 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL-------------------------------- 117 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 467999999999999999995 4789999999999999988743210
Q ss_pred CCCCCCCCCCCeeEEeccccccccC---CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-ccccccccCCCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH---PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-GPLLYHYSNMLN 272 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~---~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-gPl~y~~~~~~~ 272 (298)
.+ .++.++.+|+.++... +++||+|++..+ .++..+++.+.++|||||+++.. |+.
T Consensus 118 ----~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~--------- 177 (240)
T 1xdz_A 118 ----QL---ENTTFCHDRAETFGQRKDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAAS--------- 177 (240)
T ss_dssp ----TC---SSEEEEESCHHHHTTCTTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred ----CC---CCEEEEeccHHHhcccccccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCC---------
Confidence 00 2588999999887543 579999998653 56889999999999999999743 221
Q ss_pred CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 273 EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..-..+++.+.++..||++..
T Consensus 178 ---~~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 178 ---AEEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp ---CHHHHHHHHHHHHHTTEEEEE
T ss_pred ---chHHHHHHHHHHHHcCCeEeE
Confidence 001146678888899998864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=123.37 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=79.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+|+++..|+|+|+|+.|+..++..+...
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~---------------------------------- 67 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDL---------------------------------- 67 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 4679999999999999999999999999999999999988743320
Q ss_pred CCCCCCCCCeeEEeccccccc-cCCCceeEEEecc-ccc--------CcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCF-FID--------CANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~f-fid--------ta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.+ .++.+..+|+..+. ..+++||+|++.+ ++. ...+....++++.++|||||.++..
T Consensus 68 --~~---~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 68 --GI---ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp --TC---CCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CC---CcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 00 25777778877653 2367899988763 332 3355678899999999999999753
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=132.88 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=104.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +.+++|+|+| .|+..++..+...
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-------------------------------- 211 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-------------------------------- 211 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--------------------------------
Confidence 4679999999999999999988 6799999999 9999887643210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML--- 271 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--- 271 (298)
.+ ..++.+..+|+.+... ++.||+|++...++.. ++...++++++++|||||.++...+..-.....+
T Consensus 212 ----~~--~~~v~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~ 284 (335)
T 2r3s_A 212 ----GV--ASRYHTIAGSAFEVDY-GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDA 284 (335)
T ss_dssp ----TC--GGGEEEEESCTTTSCC-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHH
T ss_pred ----CC--CcceEEEecccccCCC-CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHH
Confidence 00 1368899999987643 3459999998888765 5668999999999999998875544321100000
Q ss_pred ----------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
......++.+|+.++++++||++++
T Consensus 285 ~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 285 AAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp HHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 0134568999999999999998875
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=125.78 Aligned_cols=110 Identities=22% Similarity=0.241 Sum_probs=87.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++ ..|+|+|+|+.
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~---------------------------------------------- 97 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR---NPVHCFDLASL---------------------------------------------- 97 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------------------------------------
T ss_pred CCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------------------------------------
Confidence 35799999999999998884 78999999975
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEP 278 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~l 278 (298)
++.+..+|+.+++.++++||+|++.+.++. .+...++++++++|||||.++...+.. ...
T Consensus 98 --------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~-----------~~~ 157 (215)
T 2zfu_A 98 --------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS-----------RFE 157 (215)
T ss_dssp --------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG-----------GCS
T ss_pred --------CceEEEeccccCCCCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC-----------CCC
Confidence 112455666665556789999999988874 789999999999999999998654321 112
Q ss_pred CHHHHHHHHHhCCCEEEEe
Q psy3185 279 SYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 279 s~eEl~~~~~~~GF~i~~~ 297 (298)
+.+++.++++++||+++..
T Consensus 158 ~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 158 DVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp CHHHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEE
Confidence 7999999999999998753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=119.31 Aligned_cols=122 Identities=11% Similarity=-0.020 Sum_probs=91.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 72 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL-------------------------------- 72 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 4679999999999999999998 678999999999999988743210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCC-CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
....++ ++.+|..+..... ++||+|++.+.++. ..+++.+.++|||||+++...+..
T Consensus 73 ------~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~----------- 130 (178)
T 3hm2_A 73 ------GVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV----------- 130 (178)
T ss_dssp ------TCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH-----------
T ss_pred ------CCCCCE-EEecchHhhhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc-----------
Confidence 001256 6778875543333 89999998887766 578999999999999998543311
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
-+..++..++++.|+++..
T Consensus 131 --~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 131 --ESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp --HHHHHHHHHHHHHCCEEEE
T ss_pred --ccHHHHHHHHHHcCCeeEE
Confidence 1256778888888888764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-14 Score=122.81 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=94.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+||| +|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 102 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN-------------------------------- 102 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh--------------------------------
Confidence 46799999999 99999999999 899999999999999988743210
Q ss_pred CCCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccc-------------------cCcchHHHHHHHHHHhccCCeE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFI-------------------DCANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffi-------------------dta~n~~~yl~~I~~~LkpGG~ 256 (298)
. .++.+..+|+..+. ..+++||+|++..-. +....+..+++.+.++|||||.
T Consensus 103 ------~--~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 174 (230)
T 3evz_A 103 ------N--SNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGK 174 (230)
T ss_dssp ------T--CCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEE
T ss_pred ------C--CCcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeE
Confidence 0 15678888854332 135899999876221 1122247899999999999999
Q ss_pred EEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
++...|-.+ -..+++.+++++.||++..
T Consensus 175 l~~~~~~~~------------~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 175 VALYLPDKE------------KLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp EEEEEESCH------------HHHHHHHHHHHHTTCEEEE
T ss_pred EEEEecccH------------hHHHHHHHHHHHcCCceEE
Confidence 986544211 1268899999999998765
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=133.00 Aligned_cols=143 Identities=14% Similarity=0.057 Sum_probs=88.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCC-HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFS-LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S-~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..||++ |..|+|+|+| ..|+..|.....+....
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~---------------------------- 75 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG---------------------------- 75 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT----------------------------
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc----------------------------
Confidence 4679999999999999999954 6789999999 88887763321111100
Q ss_pred CCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccC-----cchHHHHHHHHHHhccCCeEEEEeccccccccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDC-----ANNIVSFIETIFNILKPGGIWINLGPLLYHYSN 269 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidt-----a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~ 269 (298)
. ..++.+..+|...++.. .+.+|+|.+.|.... ..+...++++++++|||||.++.....--++..
T Consensus 76 -----~---~~~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~ 147 (225)
T 3p2e_A 76 -----G---LSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE 147 (225)
T ss_dssp -----C---CSSEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----
T ss_pred -----C---CCCeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchh
Confidence 0 13688899999887421 245555555543211 112346899999999999999752211111110
Q ss_pred CC--CCCccCCC-----HHHHHHHHHhCCCEEEEe
Q psy3185 270 ML--NEDSIEPS-----YEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 270 ~~--~~~~~~ls-----~eEl~~~~~~~GF~i~~~ 297 (298)
.+ ....-.++ .+|+.+++++.||++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 148 AEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp ----------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred chhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 00 00000122 235999999999998753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=125.52 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=93.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHH-HHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFA-SNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~-a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..|+++ +..|+|+|+|+.|+.. ++....+...
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~----------------------------- 77 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK----------------------------- 77 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG-----------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh-----------------------------
Confidence 4679999999999999999998 6889999999999984 4332111000
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc---c--cCcchHHHHHHHHHHhccCCeEEEE-eccccccccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF---I--DCANNIVSFIETIFNILKPGGIWIN-LGPLLYHYSN 269 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff---i--dta~n~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~ 269 (298)
....++.+..+|+.+++..+++ |.|...+. + ++.++...++++++++|||||.++. ++...|....
T Consensus 78 -------~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 149 (218)
T 3mq2_A 78 -------GGLPNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSV 149 (218)
T ss_dssp -------TCCTTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC
T ss_pred -------cCCCceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccc
Confidence 0013788999999998766666 76663331 1 1334447899999999999999874 2222121110
Q ss_pred CCCCCccCCC----HHHHHHHHHhCCCEEEE
Q psy3185 270 MLNEDSIEPS----YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 ~~~~~~~~ls----~eEl~~~~~~~GF~i~~ 296 (298)
......-.++ .+++..++.+.||++..
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 150 PEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp GGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred cccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 0000111222 45688899999999875
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=127.80 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=101.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.|....+ ++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..... +
T Consensus 110 ~~~~l~~~~~------~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~----~-------------- 165 (254)
T 2nxc_A 110 ALKALARHLR------PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----N-------------- 165 (254)
T ss_dssp HHHHHHHHCC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH----T--------------
T ss_pred HHHHHHHhcC------CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 5566666543 367999999999999999999999999999999999988763221 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
. ..+.+..+|+.+.. ++++||+|+++... +.+..+++.+.++|||||+++..|+
T Consensus 166 --------------------~--~~v~~~~~d~~~~~-~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 166 --------------------G--VRPRFLEGSLEAAL-PFGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp --------------------T--CCCEEEESCHHHHG-GGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------------------C--CcEEEEECChhhcC-cCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEEee
Confidence 0 12667888887643 35789999987543 3467899999999999999987654
Q ss_pred ccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 263 LLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 263 l~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.. +.+++.+++++.||+++.
T Consensus 220 ~~~-------------~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 220 LKD-------------RAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp EGG-------------GHHHHHHHHHHTTCEEEE
T ss_pred ccC-------------CHHHHHHHHHHCCCEEEE
Confidence 321 278999999999999875
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=120.23 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=87.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+++.+....+ .++.+|||+|||+|.++.+++++|. .|+|+|+|+.|+..++..+...
T Consensus 33 l~~~l~~~~~-----~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------------- 90 (189)
T 3p9n_A 33 LFNIVTARRD-----LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL----------------- 90 (189)
T ss_dssp HHHHHHHHSC-----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHhccC-----CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 4555554432 2367999999999999999999887 5999999999999988743210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccC-cchHHHHHHHHHH--hccCCeE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDC-ANNIVSFIETIFN--ILKPGGI 256 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidt-a~n~~~yl~~I~~--~LkpGG~ 256 (298)
.+ .++.+..+|+.++.. .+++||+|++..-.+. .+++...++.+.+ +|||||+
T Consensus 91 -------------------~~---~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~ 148 (189)
T 3p9n_A 91 -------------------GL---SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV 148 (189)
T ss_dssp -------------------TC---SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred -------------------CC---CceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence 00 368899999988753 3689999998754444 3678899999999 9999999
Q ss_pred EEEe
Q psy3185 257 WINL 260 (298)
Q Consensus 257 ~In~ 260 (298)
++..
T Consensus 149 l~~~ 152 (189)
T 3p9n_A 149 AVVE 152 (189)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9853
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-14 Score=121.84 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=91.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+. +..|+|+|+|+.|+..++......
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~-------------------------------- 88 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV-------------------------------- 88 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc--------------------------------
Confidence 3679999999999999999998 578999999999999887633210
Q ss_pred CCCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcc--------hHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCAN--------NIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~--------n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
.+ .++.++.+|+.++. ..+++||+|++.|-..... ....+++.+.++|||||+++...+-. .
T Consensus 89 ----~~---~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~ 160 (214)
T 1yzh_A 89 ----GV---PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR-G 160 (214)
T ss_dssp ----CC---SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH-H
T ss_pred ----CC---CCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH-H
Confidence 00 36888999988765 4568999999886432211 13579999999999999987432210 0
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..+++.+.+.+.||+++.
T Consensus 161 ------------~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 161 ------------LFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp ------------HHHHHHHHHHHHTCEEEE
T ss_pred ------------HHHHHHHHHHHCCCeeee
Confidence 135666677777777654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=119.42 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=88.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..++++| .|+|+|+|+.|+.. .
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-----~------------------------------------- 60 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-----H------------------------------------- 60 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-----C-------------------------------------
T ss_pred CCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-----c-------------------------------------
Confidence 5699999999999999999999 99999999999864 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc---------chHHHHHHHHHHhccCCeEEEEeccccccccCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA---------NNIVSFIETIFNILKPGGIWINLGPLLYHYSNM 270 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta---------~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~ 270 (298)
.++.+..+|+.+. ..+++||+|+++.-.... .+....++.+.+.| |||.++...+- .
T Consensus 61 ------~~~~~~~~d~~~~-~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~---~--- 126 (170)
T 3q87_B 61 ------RGGNLVRADLLCS-INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE---A--- 126 (170)
T ss_dssp ------SSSCEEECSTTTT-BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG---G---
T ss_pred ------cCCeEEECChhhh-cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec---C---
Confidence 2466888998774 345899999987544322 23367888888888 99998754321 1
Q ss_pred CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
-..+++.+++++.||+.+.
T Consensus 127 -------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 127 -------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp -------GCHHHHHHHHHHTTCEEEE
T ss_pred -------CCHHHHHHHHHHCCCcEEE
Confidence 1378999999999999864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=115.02 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=99.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+.+.+.+.++. .++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++..+...
T Consensus 23 ~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 80 (183)
T 2yxd_A 23 IRAVSIGKLNL----NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF------------------ 80 (183)
T ss_dssp HHHHHHHHHCC----CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc------------------
Confidence 44444444432 24679999999999999999998889999999999999888743210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+ .++.+..+|+.+. .++++||+|++... .++..+++.+.++ |||.++...+
T Consensus 81 ------------------~~---~~~~~~~~d~~~~-~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 81 ------------------NI---KNCQIIKGRAEDV-LDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp ------------------TC---CSEEEEESCHHHH-GGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred ------------------CC---CcEEEEECCcccc-ccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 00 2678899998873 34579999998776 6778899999998 9999986543
Q ss_pred ccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 263 LLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 263 l~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
... +.+++.+.+++.||.+..
T Consensus 133 ~~~-------------~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 133 VLE-------------NAAKIINEFESRGYNVDA 153 (183)
T ss_dssp CHH-------------HHHHHHHHHHHTTCEEEE
T ss_pred ccc-------------cHHHHHHHHHHcCCeEEE
Confidence 211 157889999999998764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-14 Score=133.27 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=83.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+.|. .|+|+|+|+ |+..++......
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~--------------------------------- 109 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLN--------------------------------- 109 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHc---------------------------------
Confidence 367999999999999999999987 799999996 998887643220
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.+..+|+.++..++++||+|++.. ++....++..+++++.++|||||.+|
T Consensus 110 ---~~--~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 110 ---KL--EDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ---TC--TTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ---CC--CCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 00 1378899999988866668999999754 67777888899999999999999987
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-14 Score=116.73 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=94.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.+..|+|+|.|+.|+..++..+...
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------------------------- 78 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH---------------------------------- 78 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 4679999999999999999999989999999999999887643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEP 278 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~l 278 (298)
....++.+..+|+.+.....++||+|++...+ +++..+++.+.++|||||.++...+. . -
T Consensus 79 ----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~---~----------~ 138 (192)
T 1l3i_A 79 ----GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL---L----------E 138 (192)
T ss_dssp ----TCCTTEEEEESCHHHHHTTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB---H----------H
T ss_pred ----CCCcceEEEecCHHHhcccCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecC---c----------c
Confidence 00136788889987733333689999987654 35688999999999999998854331 1 1
Q ss_pred CHHHHHHHHHhCCCEEE
Q psy3185 279 SYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 279 s~eEl~~~~~~~GF~i~ 295 (298)
+.+++.+++++.||.+.
T Consensus 139 ~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 139 TKFEAMECLRDLGFDVN 155 (192)
T ss_dssp HHHHHHHHHHHTTCCCE
T ss_pred hHHHHHHHHHHCCCceE
Confidence 26788999999999554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=116.80 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=89.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..+.+.+.++. .++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++..+...
T Consensus 40 ~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------------ 97 (194)
T 1dus_A 40 GTKILVENVVV----DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN------------------ 97 (194)
T ss_dssp HHHHHHHHCCC----CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHccc----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHc------------------
Confidence 44555555542 24679999999999999999999999999999999999888743210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC-cchHHHHHHHHHHhccCCeEEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC-ANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt-a~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.++ ..++.+..+|+.+.. .+++||+|++...++. ..++..+++.+.++|||||.++...
T Consensus 98 ------------------~~~-~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 98 ------------------NLD-NYDIRVVHSDLYENV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp ------------------TCT-TSCEEEEECSTTTTC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCC-ccceEEEECchhccc-ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEE
Confidence 000 013788899987753 4679999998766554 5677899999999999999998654
Q ss_pred c
Q psy3185 262 P 262 (298)
Q Consensus 262 P 262 (298)
|
T Consensus 158 ~ 158 (194)
T 1dus_A 158 Q 158 (194)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-14 Score=121.95 Aligned_cols=125 Identities=12% Similarity=0.107 Sum_probs=90.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..||+. +..|+|+|+|+.|+..|+..... .
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~---~----------------------------- 85 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD---S----------------------------- 85 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---S-----------------------------
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH---c-----------------------------
Confidence 3679999999999999999988 67899999999999988763321 0
Q ss_pred CCCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcch--------HHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANN--------IVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n--------~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
. ..++.++.+|+.++. .++++||.|+.+|-..+... ...+++.++++|||||.++...+-. .
T Consensus 86 ----~---~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~-~ 157 (213)
T 2fca_A 86 ----E---AQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR-G 157 (213)
T ss_dssp ----C---CSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH-H
T ss_pred ----C---CCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH-H
Confidence 0 136889999988764 35688999877653211111 2579999999999999997543210 0
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..+++.+.+.+.||.+.
T Consensus 158 ------------~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 158 ------------LFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp ------------HHHHHHHHHHHHTCEEE
T ss_pred ------------HHHHHHHHHHHCCCccc
Confidence 03456666677787664
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=128.63 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=103.8
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..+++. +..++++|+ +.|+..++......
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------------------------------- 225 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--------------------------------- 225 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc---------------------------------
Confidence 679999999999999999987 568999999 78998887643210
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccccccccCCC---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYHYSNML--- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--- 271 (298)
+...++.+..+|+.+... .++.||+|++...++... +....+++++++|||||.++...+..-.....+
T Consensus 226 -----~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~ 300 (352)
T 3mcz_A 226 -----DLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALS 300 (352)
T ss_dssp -----TCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHH
T ss_pred -----CCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchH
Confidence 001368899999988641 356799999988887554 458999999999999999986543211100000
Q ss_pred ----------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+.+.+|+.++++++||+++.
T Consensus 301 ~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 301 ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp HHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 1134578999999999999999875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=131.86 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=103.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
...+|||+|||+|.++..++++ +..|+++|+ +.|+..++..+...
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 225 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL-------------------------------- 225 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC--------------------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc--------------------------------
Confidence 3579999999999999999985 578999999 99999887632210
Q ss_pred CCCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccC----
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSN---- 269 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~---- 269 (298)
....++.+..+||.+.. +-+++||+|++...++.. ++....+++++++|||||.++...++.-....
T Consensus 226 ------~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~ 299 (363)
T 3dp7_A 226 ------SGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETAS 299 (363)
T ss_dssp ------TTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHH
T ss_pred ------CcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchh
Confidence 00137899999998752 113789999999888744 44578999999999999999764432110000
Q ss_pred ------------CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 270 ------------MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 ------------~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.......+.|.+|+.++++++||++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~ 338 (363)
T 3dp7_A 300 YCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338 (363)
T ss_dssp HHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESC
T ss_pred hHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEE
Confidence 011234567999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=120.70 Aligned_cols=127 Identities=17% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+.+ ..|+|+|+|+.|+........ ..
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~---~~----------------------------- 104 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR---ER----------------------------- 104 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH---HC-----------------------------
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh---cC-----------------------------
Confidence 46799999999999999999874 689999999999865443211 10
Q ss_pred CCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNE 273 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~ 273 (298)
.++.++.+|.... .+..++||+|++.. .+ ......++++++++|||||.++..-+- ..
T Consensus 105 ---------~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-~~-~~~~~~~l~~~~r~LkpgG~l~i~~~~--~~------ 165 (210)
T 1nt2_A 105 ---------NNIIPLLFDASKPWKYSGIVEKVDLIYQDI-AQ-KNQIEILKANAEFFLKEKGEVVIMVKA--RS------ 165 (210)
T ss_dssp ---------SSEEEECSCTTCGGGTTTTCCCEEEEEECC-CS-TTHHHHHHHHHHHHEEEEEEEEEEEEH--HH------
T ss_pred ---------CCeEEEEcCCCCchhhcccccceeEEEEec-cC-hhHHHHHHHHHHHHhCCCCEEEEEEec--CC------
Confidence 1455566666553 12237899998863 22 233445699999999999999854210 00
Q ss_pred CccCCCHHHHH--H--HHHhCCCEEEEe
Q psy3185 274 DSIEPSYEVVK--Q--VIQGLGFVYEVE 297 (298)
Q Consensus 274 ~~~~ls~eEl~--~--~~~~~GF~i~~~ 297 (298)
.....+.+++. . .+++. |++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 192 (210)
T 1nt2_A 166 IDSTAEPEEVFKSVLKEMEGD-FKIVKH 192 (210)
T ss_dssp HCTTSCHHHHHHHHHHHHHTT-SEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhh-cEEeee
Confidence 11233466653 2 26777 998764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=129.58 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=108.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.....+.+.++. .+..+|||+|||+|.++..++++ +.+++|+|+ +.|+..++..+...
T Consensus 177 ~~~~~l~~~~~~----~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------------- 236 (359)
T 1x19_A 177 FAIQLLLEEAKL----DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--------------- 236 (359)
T ss_dssp HHHHHHHHHCCC----TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT---------------
T ss_pred hhHHHHHHhcCC----CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc---------------
Confidence 344556666653 24679999999999999999998 568999999 99999887643210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIW 257 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~ 257 (298)
.+ ..++.+..+|+.+.+.++ +|+|++.+.++..++ ....+++++++|||||.+
T Consensus 237 ---------------------~~--~~~v~~~~~d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l 291 (359)
T 1x19_A 237 ---------------------GV--ADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRL 291 (359)
T ss_dssp ---------------------TC--TTTEEEEECCTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEE
T ss_pred ---------------------CC--CCCEEEEeCccccCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEE
Confidence 00 136889999998874333 399999988876665 789999999999999999
Q ss_pred EEeccccccccCCC-----------CCCccC----CCHHHHHHHHHhCCCEEEE
Q psy3185 258 INLGPLLYHYSNML-----------NEDSIE----PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 258 In~gPl~y~~~~~~-----------~~~~~~----ls~eEl~~~~~~~GF~i~~ 296 (298)
+...+..-.. ..+ .....+ ++.+|+.++++++||++++
T Consensus 292 ~i~e~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~ 344 (359)
T 1x19_A 292 LILDMVIDDP-ENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 344 (359)
T ss_dssp EEEEECCCCT-TSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEE
T ss_pred EEEecccCCC-CCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEE
Confidence 7543221000 000 001223 8999999999999999875
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=128.84 Aligned_cols=112 Identities=13% Similarity=-0.037 Sum_probs=78.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
.++.+.+.++. .++.+|||+|||+|+++..||++|++|+|+|+|+.|+..++..... . +
T Consensus 33 ~~~~il~~l~l----~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~---~-------~------- 91 (261)
T 3iv6_A 33 DRENDIFLENI----VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD---R-------C------- 91 (261)
T ss_dssp HHHHHHHTTTC----CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS---S-------C-------
T ss_pred HHHHHHHhcCC----CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh---c-------c-------
Confidence 34445555442 3567999999999999999999999999999999999988762210 0 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeEEEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~~In 259 (298)
....+...++......+++||+|++++.+++ .++...+++++.++| |||+++.
T Consensus 92 -----------------------v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~l 146 (261)
T 3iv6_A 92 -----------------------VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRA 146 (261)
T ss_dssp -----------------------CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred -----------------------ceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEE
Confidence 0111111111000112578999999888764 456788999999999 9999873
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=133.15 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=89.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
..+.+.|.+..+. .++.+|||+|||+|.++..+|++|. +|+|+|.| .|+..++......
T Consensus 49 ~~~~~~i~~~~~~----~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~--------------- 108 (376)
T 3r0q_C 49 DAYFNAVFQNKHH----FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN--------------- 108 (376)
T ss_dssp HHHHHHHHTTTTT----TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhcccc----CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc---------------
Confidence 3344555544332 3467999999999999999999998 89999999 9999888754320
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccCCeE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpGG~ 256 (298)
.+ ..++.+..+|+.++..+ ++||+|++. +++.....+..+++.++++|||||+
T Consensus 109 ---------------------~~--~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 164 (376)
T 3r0q_C 109 ---------------------NL--DHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV 164 (376)
T ss_dssp ---------------------TC--TTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred ---------------------CC--CCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeE
Confidence 01 13588999999888654 899999984 5666667788899999999999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
+|.
T Consensus 165 li~ 167 (376)
T 3r0q_C 165 MYP 167 (376)
T ss_dssp EES
T ss_pred EEE
Confidence 973
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-14 Score=127.17 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=97.4
Q ss_pred CCeEEEecccC---cHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 120 DVNILVPGAGL---GRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 120 ~~~VLdpGcG~---Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
..+|||+|||+ |.++..+++. +..|+|+|+|+.|+..++..+..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------------------------------- 126 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------------------------------- 126 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------------------------------
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------------------------------
Confidence 46999999999 9887766664 68999999999999998874310
Q ss_pred CCCCCCCCCCCCCeeEEeccccccc-----------cCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEec
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVY-----------VHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~-----------~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~g 261 (298)
..++.++.+|+.+.. .+.++||+|++...+++.++ +...+++++++|||||+++...
T Consensus 127 ----------~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 127 ----------DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp ----------CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----------CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 136788999987531 12358999999888887665 8899999999999999997432
Q ss_pred ccc------------ccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PLL------------YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl~------------y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
... |... ..+....+.+|+.+++ .||+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 197 LVDTGLPAQQKLARITREN---LGEGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp EBCSSCHHHHHHHHHHHHH---HSCCCCBCHHHHHHTT--TTCEECT
T ss_pred ecCcchHHHHHHHHHHHhc---CCCCccCCHHHHHHHh--CCCeEcc
Confidence 211 1110 1133447999999999 5998763
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-14 Score=124.72 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=90.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+. | ..|+|+|+|+.|+..++.... .
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~---~------------------------------ 120 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA---E------------------------------ 120 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT---T------------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhh---c------------------------------
Confidence 4679999999999999999988 5 689999999999988775211 0
Q ss_pred CCCCCCCCCCCeeEEeccccc----cccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ----VYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN 272 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~----~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~ 272 (298)
..++.+..+|+.+ .... ++||+|+.. +........+++++.++|||||+++.. +.....+ ..
T Consensus 121 --------~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~--~~~~~~~-~~ 186 (230)
T 1fbn_A 121 --------RENIIPILGDANKPQEYANIV-EKVDVIYED--VAQPNQAEILIKNAKWFLKKGGYGMIA--IKARSID-VT 186 (230)
T ss_dssp --------CTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEE--EEGGGTC-SS
T ss_pred --------CCCeEEEECCCCCcccccccC-ccEEEEEEe--cCChhHHHHHHHHHHHhCCCCcEEEEE--EecCCCC-CC
Confidence 0367788888876 4333 789999832 122222367899999999999999853 1111111 01
Q ss_pred CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 273 EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+...+..+++. ++++.||+++.
T Consensus 187 ~~~~~~~~~~l~-~l~~~Gf~~~~ 209 (230)
T 1fbn_A 187 KDPKEIFKEQKE-ILEAGGFKIVD 209 (230)
T ss_dssp SCHHHHHHHHHH-HHHHHTEEEEE
T ss_pred CCHHHhhHHHHH-HHHHCCCEEEE
Confidence 111133458888 88899999865
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=132.53 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=83.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|. .|+|+|.| .|+..|+......
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~---------------------------------- 111 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKAN---------------------------------- 111 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHT----------------------------------
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHc----------------------------------
Confidence 57999999999999999999987 89999999 5999888744320
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.++.+|+.++..++++||+|++.. ++.....+..+++.+.++|||||++|
T Consensus 112 --~~--~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 112 --KL--DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp --TC--TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --CC--CCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 01 1358899999999876679999999853 46666788899999999999999987
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=123.99 Aligned_cols=162 Identities=10% Similarity=0.035 Sum_probs=107.3
Q ss_pred HHHHHHHHhhhccCChHH-----HhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCC
Q psy3185 78 QTTLKQFVRDWSEEGSEE-----RKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFS 150 (298)
Q Consensus 78 ~~~l~~~~RdWs~~g~~E-----R~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S 150 (298)
...+.++..+|....... .+..-..+++.+.-..+.. ..++.+|||+|||+|.++..+|.. +.+|+|+|.|
T Consensus 36 ~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~--~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s 113 (249)
T 3g89_A 36 FSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPL--WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDAT 113 (249)
T ss_dssp HHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSC--CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccc--cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC
Confidence 346667777887633221 1111133444443322210 124679999999999999999987 5789999999
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC---CCceeE
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH---PNKWDC 227 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~---~~~fD~ 227 (298)
..|+..++...... .+ .++.++.+|+.++... .++||+
T Consensus 114 ~~~~~~a~~~~~~~------------------------------------~l---~~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 114 RKKVAFVERAIEVL------------------------------------GL---KGARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp HHHHHHHHHHHHHH------------------------------------TC---SSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred HHHHHHHHHHHHHh------------------------------------CC---CceEEEECcHHHhhcccccCCCceE
Confidence 99999988743321 01 2588999999887643 379999
Q ss_pred EEecccccCcchHHHHHHHHHHhccCCeEEEEe-ccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 228 VATCFFIDCANNIVSFIETIFNILKPGGIWINL-GPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 228 V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|++..+ .++..+++.+.++|||||+++.. |+. +.. ..+++...++..||.+..
T Consensus 155 I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~-----------e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 155 AVARAV----APLCVLSELLLPFLEVGGAAVAMKGPR-VEE-----------ELAPLPPALERLGGRLGE 208 (249)
T ss_dssp EEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSC-CHH-----------HHTTHHHHHHHHTEEEEE
T ss_pred EEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCC-cHH-----------HHHHHHHHHHHcCCeEEE
Confidence 998643 46778999999999999998742 321 100 144567778888998865
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=125.81 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=80.0
Q ss_pred CCCCeEEEecccCcHHH-HHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLA-FEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla-~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.++.+|||+|||+|.++ ..+|+ .|..|+|+|+|+.|+..|+....+.
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~------------------------------- 169 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL------------------------------- 169 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------------------------------
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 35789999999998765 55676 4899999999999999998754321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.++.||+.++. +++||+|++... .++...++++++++|||||+++.
T Consensus 170 -----gl---~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 170 -----GV---DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp -----TC---CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred -----CC---CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 01 37889999999874 689999987654 57788999999999999999984
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-14 Score=129.27 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=82.4
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|. .|+|+|.| .|+..++......
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~---------------------------------- 83 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELN---------------------------------- 83 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHT----------------------------------
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHc----------------------------------
Confidence 56999999999999999999987 79999999 6998887643320
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.++.+|+.++..+.++||+|++. +++.....+..++..+.++|||||++|
T Consensus 84 --~~--~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 84 --GF--SDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --TC--TTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --CC--CCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 01 136889999998886666899999986 456666778899999999999999987
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=137.87 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|+++..|++.| ..|+|+|+|+.|+..|+..++.....
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA---------------------------- 772 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK---------------------------- 772 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT----------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch----------------------------
Confidence 36799999999999999999998 78999999999999998754321000
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH--HHHHHHHHhccCCeEEEEecccc-c----c-c
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV--SFIETIFNILKPGGIWINLGPLL-Y----H-Y 267 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~--~yl~~I~~~LkpGG~~In~gPl~-y----~-~ 267 (298)
. . ....++.+..||+.++...+++||+|++...+++.++.. .++++++++|||| .+|...|.. | . .
T Consensus 773 --k--r-~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~L 846 (950)
T 3htx_A 773 --E--A-CNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRS 846 (950)
T ss_dssp --T--C-SSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC
T ss_pred --h--h-cCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhc
Confidence 0 0 011378999999999887779999999999998877644 6999999999999 554333321 1 1 0
Q ss_pred --------cCC-------CCCCccCCCHHHHHH----HHHhCCCEEEE
Q psy3185 268 --------SNM-------LNEDSIEPSYEVVKQ----VIQGLGFVYEV 296 (298)
Q Consensus 268 --------~~~-------~~~~~~~ls~eEl~~----~~~~~GF~i~~ 296 (298)
.+. ......+++.+|+.. +..+.||.+.-
T Consensus 847 np~tr~~dPd~~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVef 894 (950)
T 3htx_A 847 TPETQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEF 894 (950)
T ss_dssp ------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccccccccccccccccccCcceeecHHHHHHHHHHHHHhcCcEEEE
Confidence 000 012346689999988 67778998753
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=120.56 Aligned_cols=102 Identities=19% Similarity=0.053 Sum_probs=78.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..++.+|. .|+|+|+|+.|+..++..+...
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---------------------------------- 99 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL---------------------------------- 99 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh----------------------------------
Confidence 56999999999999999888886 7999999999999988733210
Q ss_pred CCCCCCCCCeeEEeccccccccC--CCc-eeEEEecccccCcchHHHHHHHH--HHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH--PNK-WDCVATCFFIDCANNIVSFIETI--FNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~--~~~-fD~V~t~ffidta~n~~~yl~~I--~~~LkpGG~~In 259 (298)
.+. ..++.+..+|+.++... +++ ||+|++..... ..+....++.+ .++|||||+++.
T Consensus 100 --~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i 161 (201)
T 2ift_A 100 --KCS-SEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYV 161 (201)
T ss_dssp --TCC-TTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred --CCC-ccceEEEECCHHHHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEE
Confidence 000 02688999998876432 578 99998765433 45677888888 678999999874
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=123.45 Aligned_cols=137 Identities=16% Similarity=0.152 Sum_probs=101.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
|...+..+...++. .++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 81 ~~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------ 144 (258)
T 2pwy_A 81 YPKDASAMVTLLDL----APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF------------ 144 (258)
T ss_dssp CHHHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------------
T ss_pred cchHHHHHHHHcCC----CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh------------
Confidence 33344555555542 34679999999999999999998 578999999999999888743210
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeE
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~ 256 (298)
.. ..++.+..+|+.+...++++||+|++. .++...+++.+.++|||||.
T Consensus 145 -------------------------~g-~~~v~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~ 193 (258)
T 2pwy_A 145 -------------------------WQ-VENVRFHLGKLEEAELEEAAYDGVALD-----LMEPWKVLEKAALALKPDRF 193 (258)
T ss_dssp -------------------------CC-CCCEEEEESCGGGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEE
T ss_pred -------------------------cC-CCCEEEEECchhhcCCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCE
Confidence 00 136788899998874456799999873 24556889999999999999
Q ss_pred EEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
++...|..- ...++.+.+++.||..+.
T Consensus 194 l~~~~~~~~-------------~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 194 LVAYLPNIT-------------QVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEESCHH-------------HHHHHHHHHTTTTEEEEE
T ss_pred EEEEeCCHH-------------HHHHHHHHHHHCCCceEE
Confidence 987655321 146778888889998754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=117.78 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=85.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+...+.+.+.. .++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++..+...
T Consensus 65 ~~~~~~~~l~~----~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 122 (210)
T 3lbf_A 65 MVARMTELLEL----TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL------------------ 122 (210)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCC----CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc------------------
Confidence 45555555542 35679999999999999999999999999999999999988743320
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ..++.+..+|+.+.....++||+|++...+++..+ .+.++|||||+++.
T Consensus 123 --------------------~-~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 123 --------------------D-LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVL 172 (210)
T ss_dssp --------------------T-CCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEE
T ss_pred --------------------C-CCceEEEECCcccCCccCCCccEEEEccchhhhhH------HHHHhcccCcEEEE
Confidence 0 02688999999887666789999999877766553 68899999999874
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-14 Score=126.50 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=93.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 158 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF------------------------------- 158 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-------------------------------
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 4679999999999999999987 789999999999999887633210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
....++.+..+|+.+. .++++||+|++ +.++...+++++.++|||||+++...|..-
T Consensus 159 -------~g~~~v~~~~~d~~~~-~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---------- 215 (275)
T 1yb2_A 159 -------YDIGNVRTSRSDIADF-ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD---------- 215 (275)
T ss_dssp -------SCCTTEEEECSCTTTC-CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------
T ss_pred -------CCCCcEEEEECchhcc-CcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------
Confidence 0013678889998874 34578999987 234567899999999999999986655210
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..+++.+.+++.||..+.
T Consensus 216 ---~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 216 ---QSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp ---HHHHHHHHSGGGTEEEEE
T ss_pred ---HHHHHHHHHHHCCCeEEE
Confidence 256778888889998764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-13 Score=127.22 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcchHHHHHHHHHHHh-------------hhccCChH
Q psy3185 28 LNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNSTDLEKVQTTLKQFVR-------------DWSEEGSE 94 (298)
Q Consensus 28 l~~~~~~i~~N~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~R-------------dWs~~g~~ 94 (298)
++.+.+.++.=.++++.+.+.-...+.+. .. ...|+ .+-++..|.+.+. .|+++...
T Consensus 86 ~~~~~~l~~~yN~~~~~~~~~~~g~~~~~------~~-~~~~~---~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYG 155 (438)
T 3uwp_A 86 FESMQRLCDKYNRAIDSIHQLWKGTTQPM------KL-NTRPS---TGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYG 155 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCC------CC-SBCCC---HHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcc------cc-cCCCC---HHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccC
Confidence 55566677766677777776432211111 01 11232 2456666666654 34443322
Q ss_pred HHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHHHHhhhhhc-cccc
Q psy3185 95 ERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYV-CQGNEFSLFMLFASNFILNKCREK-NVYK 171 (298)
Q Consensus 95 ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~~l~~~~~~-~~~~ 171 (298)
|. ....+..+.+.+.. .++.+|||+|||+|+++..+|.. |.. |+|+|+|+.|+..|+.......+. ...
T Consensus 156 Et---~~~~i~~il~~l~l----~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~- 227 (438)
T 3uwp_A 156 ET---SFDLVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY- 227 (438)
T ss_dssp GT---HHHHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CC---CHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-
Confidence 32 22344444444432 35789999999999999999965 775 999999999999987643221100 000
Q ss_pred cccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC--CceeEEEecccccCcchHHHHHHHHHH
Q psy3185 172 IYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP--NKWDCVATCFFIDCANNIVSFIETIFN 249 (298)
Q Consensus 172 i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~--~~fD~V~t~ffidta~n~~~yl~~I~~ 249 (298)
. +. ..++.++.|||.+++..+ +.||+|++..++. .+++...|.+|++
T Consensus 228 ------------------------G-----l~-~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~R 276 (438)
T 3uwp_A 228 ------------------------G-----KK-HAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFA 276 (438)
T ss_dssp ------------------------T-----BC-CCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHT
T ss_pred ------------------------C-----CC-CCCeEEEECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHH
Confidence 0 00 137899999999886533 5799998765443 4688889999999
Q ss_pred hccCCeEEEEecc
Q psy3185 250 ILKPGGIWINLGP 262 (298)
Q Consensus 250 ~LkpGG~~In~gP 262 (298)
.|||||.+|..-+
T Consensus 277 vLKPGGrIVssE~ 289 (438)
T 3uwp_A 277 NMKEGGRIVSSKP 289 (438)
T ss_dssp TSCTTCEEEESSC
T ss_pred cCCCCcEEEEeec
Confidence 9999999996544
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=123.89 Aligned_cols=128 Identities=19% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+.|.. |+|+|+|+.|+..++.-... +
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~----n----------------------------- 171 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL----N----------------------------- 171 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 3679999999999999999999985 99999999999988763221 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
.+ ..++.+..+|+.++.. .++||+|++.. ......+++.+.++|||||+++......-+ ....
T Consensus 172 ---~~--~~~v~~~~~D~~~~~~-~~~fD~Vi~~~----p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-------~~~~ 234 (278)
T 2frn_A 172 ---KV--EDRMSAYNMDNRDFPG-ENIADRILMGY----VVRTHEFIPKALSIAKDGAIIHYHNTVPEK-------LMPR 234 (278)
T ss_dssp ---TC--TTTEEEECSCTTTCCC-CSCEEEEEECC----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGG-------GTTT
T ss_pred ---CC--CceEEEEECCHHHhcc-cCCccEEEECC----chhHHHHHHHHHHHCCCCeEEEEEEeeccc-------cccc
Confidence 01 1257899999988865 78999998743 334467899999999999998743211000 1123
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
-..+++.+.+++.||++..
T Consensus 235 ~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 235 EPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp TTHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHcCCeeEE
Confidence 3578999999999998864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-14 Score=122.64 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=97.1
Q ss_pred hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccc
Q psy3185 93 SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVY 170 (298)
Q Consensus 93 ~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~ 170 (298)
-.||-++|+++.+.+..+++. ..+|||+|||+|-+|..++.. +..|+|+|+|+.|+..++..+...
T Consensus 29 TReRLp~ld~fY~~~~~~l~~------~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~------ 96 (200)
T 3fzg_A 29 TNERVATLNDFYTYVFGNIKH------VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL------ 96 (200)
T ss_dssp HHTTGGGHHHHHHHHHHHSCC------CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS------
T ss_pred HHHHhHhHHHHHHHHHhhcCC------CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 457778899999998888863 679999999999999999887 678999999999999998754320
Q ss_pred ccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHh
Q psy3185 171 KIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNI 250 (298)
Q Consensus 171 ~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~ 250 (298)
....++.+ +|+.+. ..+++||+|+..-.|+..++....+..+++.
T Consensus 97 --------------------------------g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~ 141 (200)
T 3fzg_A 97 --------------------------------KTTIKYRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQL 141 (200)
T ss_dssp --------------------------------CCSSEEEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHT
T ss_pred --------------------------------CCCccEEE--eccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHH
Confidence 00113433 666554 3578999999998888887777788899999
Q ss_pred ccCCeEEEEe
Q psy3185 251 LKPGGIWINL 260 (298)
Q Consensus 251 LkpGG~~In~ 260 (298)
|||||++|++
T Consensus 142 L~pggvfISf 151 (200)
T 3fzg_A 142 FHTQNFVISF 151 (200)
T ss_dssp CEEEEEEEEE
T ss_pred hCCCCEEEEe
Confidence 9999999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-13 Score=125.91 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=107.8
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
...+.+.++. .+..+|||+|||+|.++..++++ +..++++|+ +.|+..++..+...
T Consensus 191 ~~~l~~~~~~----~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----------------- 248 (369)
T 3gwz_A 191 AGQVAAAYDF----SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR----------------- 248 (369)
T ss_dssp HHHHHHHSCC----TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhCCC----ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc-----------------
Confidence 4455556653 24679999999999999999998 568999999 99999888643210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++.+..+||.+-. +..||+|++...++..++. ...+++++++|||||.++.
T Consensus 249 -------------------~l--~~~v~~~~~d~~~~~--p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i 305 (369)
T 3gwz_A 249 -------------------GL--ADRCEILPGDFFETI--PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLV 305 (369)
T ss_dssp -------------------TC--TTTEEEEECCTTTCC--CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred -------------------Cc--CCceEEeccCCCCCC--CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 00 147899999998432 2389999998888766554 4799999999999999986
Q ss_pred ecccccccc-------CC---CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPLLYHYS-------NM---LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl~y~~~-------~~---~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..+..-... +. ......+.|.+|+.++++++||++++
T Consensus 306 ~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 306 IDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred EEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 443211100 00 00123468999999999999999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=125.81 Aligned_cols=137 Identities=10% Similarity=0.041 Sum_probs=102.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|||+|.++..+++. +..++++|+ +.|+..++..+...
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 215 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT-------------------------------- 215 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--------------------------------
Confidence 3579999999999999999986 467999999 99999887643210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEeccccccccCC----
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYHYSNM---- 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~---- 270 (298)
.+ ..++.+..+||.+-. +.+||+|++...++..++ ....+++++++|||||+++...+..-.....
T Consensus 216 ----~~--~~~v~~~~~d~~~~~--p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d 287 (332)
T 3i53_A 216 ----GL--SGRAQVVVGSFFDPL--PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMD 287 (332)
T ss_dssp ----TC--TTTEEEEECCTTSCC--CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHH
T ss_pred ----Cc--CcCeEEecCCCCCCC--CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHH
Confidence 00 147899999997432 238999999988876655 5889999999999999998654422111000
Q ss_pred ----CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 ----LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ----~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
......+.|.+|+.++++++||++++
T Consensus 288 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 288 LRMLTYFGGKERSLAELGELAAQAGLAVRA 317 (332)
T ss_dssp HHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 00123568999999999999999875
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=130.05 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=90.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+++.+.+..+.. ..++.+|||+|||+|.++..++++|.+|+|+|+|+.|+..++..+...
T Consensus 218 ~ll~~l~~~l~~~--~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~----------------- 278 (381)
T 3dmg_A 218 LLLEALQERLGPE--GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEAN----------------- 278 (381)
T ss_dssp HHHHHHHHHHCTT--TTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhhccc--CCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 3555555543200 124679999999999999999999999999999999999988733210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC-----cchHHHHHHHHHHhccCCeE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC-----ANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt-----a~n~~~yl~~I~~~LkpGG~ 256 (298)
..++.+..+|+.+...++++||+|++...++. ......+++.+.++|||||.
T Consensus 279 -----------------------~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~ 335 (381)
T 3dmg_A 279 -----------------------ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGV 335 (381)
T ss_dssp -----------------------TCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEE
T ss_pred -----------------------CCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcE
Confidence 01367888999887655689999998754444 56778999999999999999
Q ss_pred EEEec
Q psy3185 257 WINLG 261 (298)
Q Consensus 257 ~In~g 261 (298)
++.+.
T Consensus 336 l~iv~ 340 (381)
T 3dmg_A 336 FFLVS 340 (381)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=120.52 Aligned_cols=126 Identities=12% Similarity=0.071 Sum_probs=95.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+++. .|+|+|+|+.|+..++......
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~--------------------------------- 95 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN--------------------------------- 95 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC---------------------------------
Confidence 467999999999999999999976 8999999999999887633210
Q ss_pred CCCCCCCCCCeeEEecccccccc--CCCceeEEEec--cccc---C---------------cchHHHHHHHHHHhccCCe
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATC--FFID---C---------------ANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~--ffid---t---------------a~n~~~yl~~I~~~LkpGG 255 (298)
+-..++.+..+|+.++.. .+++||+|++. |+-. . ..++..+++.+.++|||||
T Consensus 96 -----~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG 170 (259)
T 3lpm_A 96 -----QLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGG 170 (259)
T ss_dssp -----TCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEE
T ss_pred -----CCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCc
Confidence 001368899999988753 36899999985 3221 0 1345679999999999999
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++.+.| . -..+++...+.+.||....
T Consensus 171 ~l~~~~~----~----------~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 171 KANFVHR----P----------ERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp EEEEEEC----T----------TTHHHHHHHHHHTTEEEEE
T ss_pred EEEEEEc----H----------HHHHHHHHHHHHCCCceEE
Confidence 9985422 1 1378899999999998764
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=118.68 Aligned_cols=108 Identities=20% Similarity=0.120 Sum_probs=84.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+++.+.+.+.. .++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..+..
T Consensus 57 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~------------------ 114 (231)
T 1vbf_A 57 NLGIFMLDELDL----HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY------------------ 114 (231)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh------------------
Confidence 455666665542 2467999999999999999999999999999999999988763211
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
..++.+..+|+.+....+++||+|++...+++.. +.+.++|||||+++..
T Consensus 115 -----------------------~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 115 -----------------------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (231)
T ss_dssp -----------------------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred -----------------------cCCeEEEECCcccccccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEE
Confidence 0167788999887444467999999988777654 4688999999998743
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=116.06 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=81.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..++++ | ..|+|+|+|+.|+..++..+...
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 70 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL------------------------------- 70 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 3679999999999999999987 2 58999999999999988743320
Q ss_pred CCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEeccc---------ccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFF---------IDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ff---------idta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.+ ..++.+..+|+.++. ..+++||+|++... ++...+...+++.+.++|||||+++..
T Consensus 71 -----~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 71 -----NL--IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp -----TC--GGGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----CC--CCCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 00 136889999988875 34589999987652 233446678999999999999998754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=125.23 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=94.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++.++++. +..|+++|+|+.|+..++..+..... .
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~-----------------------------~ 145 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR-----------------------------S 145 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----------------------------G
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc-----------------------------c
Confidence 3579999999999999999987 35899999999999998863311000 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCc--chH--HHHHHHHHHhccCCeEEEEeccccccccCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCA--NNI--VSFIETIFNILKPGGIWINLGPLLYHYSNM 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta--~n~--~~yl~~I~~~LkpGG~~In~gPl~y~~~~~ 270 (298)
....++.++.+|+.++.. .+++||+|++..+.... ..+ .++++.++++|||||+++...+-.|.
T Consensus 146 ------~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~---- 215 (304)
T 3bwc_A 146 ------LADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL---- 215 (304)
T ss_dssp ------GGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT----
T ss_pred ------cCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc----
Confidence 001478899999988754 36899999886543322 122 58999999999999999854321111
Q ss_pred CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+.+++.+.+++.||..+.
T Consensus 216 -----~~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 216 -----DLELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp -----CHHHHHHHHHHHHHHTCSEEE
T ss_pred -----chHHHHHHHHHHHhCCCCcEE
Confidence 011367888999999997653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=120.33 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=100.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
|......+...... .++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 78 ~~~~~~~i~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------ 141 (255)
T 3mb5_A 78 HPKDAALIVAYAGI----SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA------------ 141 (255)
T ss_dssp CHHHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------------
T ss_pred cHhHHHHHHHhhCC----CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc------------
Confidence 34445555555542 35679999999999999999998 678999999999999988743221
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeE
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~ 256 (298)
.+ ..++.+..+|+.+.. ++++||+|++. .++...+++.+.++|||||.
T Consensus 142 ------------------------~~--~~~v~~~~~d~~~~~-~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~ 189 (255)
T 3mb5_A 142 ------------------------GF--DDRVTIKLKDIYEGI-EEENVDHVILD-----LPQPERVVEHAAKALKPGGF 189 (255)
T ss_dssp ------------------------TC--TTTEEEECSCGGGCC-CCCSEEEEEEC-----SSCGGGGHHHHHHHEEEEEE
T ss_pred ------------------------CC--CCceEEEECchhhcc-CCCCcCEEEEC-----CCCHHHHHHHHHHHcCCCCE
Confidence 00 124889999998763 56789999873 34556789999999999999
Q ss_pred EEEeccccccccCCCCCCccCCCHHHHHHHHHhCC--CEEE
Q psy3185 257 WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLG--FVYE 295 (298)
Q Consensus 257 ~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~G--F~i~ 295 (298)
++...|... ..+++.+.+++.| |..+
T Consensus 190 l~~~~~~~~-------------~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 190 FVAYTPCSN-------------QVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp EEEEESSHH-------------HHHHHHHHHHHTGGGBSCC
T ss_pred EEEEECCHH-------------HHHHHHHHHHHcCCCcccc
Confidence 987655321 1567888888888 8643
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=117.84 Aligned_cols=116 Identities=8% Similarity=-0.016 Sum_probs=89.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..++.. +..|+|+|+|+.|+..++......
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------------- 112 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL--------------------------------- 112 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------
Confidence 569999999999999999987 678999999999999887643210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-ccccccccCCCCCCcc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-GPLLYHYSNMLNEDSI 276 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-gPl~y~~~~~~~~~~~ 276 (298)
. ..++.+..+|+.+.. ..++||+|++.. ..++..+++.+.++|||||+++.. |+
T Consensus 113 ---~---~~~v~~~~~d~~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~-------------- 167 (207)
T 1jsx_A 113 ---K---LENIEPVQSRVEEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKGQ-------------- 167 (207)
T ss_dssp ---T---CSSEEEEECCTTTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEESS--------------
T ss_pred ---C---CCCeEEEecchhhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCC--------------
Confidence 0 024788999998875 457999998653 256779999999999999998743 21
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+++.+++. ||++++
T Consensus 168 -~~~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 168 -MPEDEIALLPE--EYQVES 184 (207)
T ss_dssp -CCHHHHHTSCT--TEEEEE
T ss_pred -CchHHHHHHhc--CCceee
Confidence 13567777664 888764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-13 Score=122.56 Aligned_cols=146 Identities=16% Similarity=0.058 Sum_probs=105.9
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
...+.+.++. .+ .+|||+|||+|.++..++++ +..++++|+ +.|+..++..+....
T Consensus 157 ~~~~~~~~~~----~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---------------- 214 (334)
T 2ip2_A 157 FHEIPRLLDF----RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL---------------- 214 (334)
T ss_dssp HHHHHHHSCC----TT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH----------------
T ss_pred HHHHHHhCCC----CC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC----------------
Confidence 3455555543 23 79999999999999999987 578999999 999998876322100
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In 259 (298)
+ ..++.+..+|+.+. . +++||+|++...++... .....+++++++|||||.++.
T Consensus 215 --------------------~--~~~v~~~~~d~~~~-~-~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i 270 (334)
T 2ip2_A 215 --------------------A--GERVSLVGGDMLQE-V-PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVV 270 (334)
T ss_dssp --------------------H--TTSEEEEESCTTTC-C-CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------------------C--CCcEEEecCCCCCC-C-CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 13688999999873 2 36899999988887444 345899999999999999886
Q ss_pred eccccccccCCC------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPLLYHYSNML------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl~y~~~~~~------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..+..-.. ..+ .....+.+.+|+.++++++||++++
T Consensus 271 ~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 271 IERTISAS-EPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp EECCBCSS-SCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred EEeccCCC-CCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence 54321100 000 0023457999999999999999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-13 Score=124.10 Aligned_cols=137 Identities=17% Similarity=0.145 Sum_probs=100.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..++++|+ +.|+..++..+...
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 228 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-------------------------------- 228 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--------------------------------
Confidence 4679999999999999999988 468999999 99999887633210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchH--HHHHHHHHHhccCCeEEEEecc--ccccccC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI--VSFIETIFNILKPGGIWINLGP--LLYHYSN--- 269 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~--~~yl~~I~~~LkpGG~~In~gP--l~y~~~~--- 269 (298)
.+ ..++.+..+|+.+.. +..||+|++...++...+. ..++++++++|||||.++...+ ..-....
T Consensus 229 ----~~--~~~v~~~~~d~~~~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~ 300 (374)
T 1qzz_A 229 ----GL--ADRVTVAEGDFFKPL--PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFF 300 (374)
T ss_dssp ----TC--TTTEEEEECCTTSCC--SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHH
T ss_pred ----CC--CCceEEEeCCCCCcC--CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcch
Confidence 00 137889999987632 2349999998888766554 4899999999999998875443 2100000
Q ss_pred -----C---CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 270 -----M---LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 -----~---~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
. .......++.+|+.++++++||++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 301 STLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred hhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 0 00013457999999999999999875
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=128.42 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..++++|. .|+|+|+|+.|+..++. +.... ..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~---~~~~~---~~------------------------- 85 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIR---SDERV---VV------------------------- 85 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHH---TCTTE---EE-------------------------
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHH---hCccc---cc-------------------------
Confidence 467999999999999999999995 89999999999987654 11000 00
Q ss_pred CCCCCCCCCCeeEEe-ccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-cccccccc----CCC
Q psy3185 198 NTSDYNDDCDFSMAA-GDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-GPLLYHYS----NML 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~-gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-gPl~y~~~----~~~ 271 (298)
....++.+.. +|+....++..+||+|++.+ ..++++++++|||||.++.+ .|. |... ...
T Consensus 86 -----~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l--------~~~l~~i~rvLkpgG~lv~~~~p~-~e~~~~~~~~~ 151 (232)
T 3opn_A 86 -----MEQFNFRNAVLADFEQGRPSFTSIDVSFISL--------DLILPPLYEILEKNGEVAALIKPQ-FEAGREQVGKN 151 (232)
T ss_dssp -----ECSCCGGGCCGGGCCSCCCSEEEECCSSSCG--------GGTHHHHHHHSCTTCEEEEEECHH-HHSCHHHHC-C
T ss_pred -----cccceEEEeCHhHcCcCCCCEEEEEEEhhhH--------HHHHHHHHHhccCCCEEEEEECcc-cccCHHHhCcC
Confidence 0001121111 33322111334566655432 57899999999999998753 442 1100 000
Q ss_pred ----CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.......+.+++.+++++.||+++.
T Consensus 152 G~~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 152 GIIRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 0011224789999999999999875
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=112.63 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=74.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++......
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~----------------------------------- 86 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT----------------------------------- 86 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc-----------------------------------
Confidence 569999999999999999999999999999999999888633210
Q ss_pred CCCCCCCCeeEEecccccccc----CCCceeEEEecccccCcchHHHHHHHHH--HhccCCeEEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATCFFIDCANNIVSFIETIF--NILKPGGIWINL 260 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~ffidta~n~~~yl~~I~--~~LkpGG~~In~ 260 (298)
. .++.+..+|+.+... ..++||+|++....+ .+..+.++.+. ++|||||+++..
T Consensus 87 ---~--~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~ 146 (171)
T 1ws6_A 87 ---G--LGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp ---T--CCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred ---C--CceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEE
Confidence 0 156788888877422 134899999873222 23345555555 999999999743
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=116.56 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=90.9
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.++.+|||+|||. | ++|+|+.|+..++....
T Consensus 11 ~~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~~----------------------------------- 41 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-------------S-PVEALKGLVDKLQALTG----------------------------------- 41 (176)
T ss_dssp CTTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred CCCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhcc-----------------------------------
Confidence 3578999999996 2 39999999998876210
Q ss_pred CCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCc-chHHHHHHHHHHhccCCeEEEEeccccccccCCCCC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCA-NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNE 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta-~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~ 273 (298)
.++.+..+|+.++.. ++++||+|++++.+++. ++....+++++++|||||+++...|..- . ...
T Consensus 42 --------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~-~---~~~ 109 (176)
T 2ld4_A 42 --------NEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVET-A---VDN 109 (176)
T ss_dssp --------TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEES-S---SCS
T ss_pred --------cCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccc-c---ccc
Confidence 136678888888765 67899999999999988 8899999999999999999987666321 1 111
Q ss_pred CccCCCHHHHHHHHHhCCCEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
.....+.+++.++++++|| +.
T Consensus 110 ~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 110 NSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp SSSSCCHHHHHHHHHHTTC-EE
T ss_pred ccccCCHHHHHHHHHHCCC-cE
Confidence 3344689999999999999 54
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-14 Score=127.11 Aligned_cols=134 Identities=14% Similarity=0.015 Sum_probs=95.5
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|+.|..|+|+|+|+.|+..++..+...
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------------- 123 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY----------------------------------- 123 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------------------------
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----------------------------------
Confidence 579999999999999999999999999999999999988743220
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPS 279 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls 279 (298)
.+ ..++.+..+|+.++. .+++||+|++...+....+....+..++++|||||++|.-....+.. +....-....+
T Consensus 124 -~~--~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~-~~~~~lp~~~~ 198 (241)
T 3gdh_A 124 -GI--ADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN-NIVYFLPRNAD 198 (241)
T ss_dssp -TC--GGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCS-CEEEEEETTBC
T ss_pred -CC--CcCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHHHHhhCC-ceEEECCCCCC
Confidence 00 036889999998886 56899999988766666665557788999999999865211100000 00000122356
Q ss_pred HHHHHHHHHhCCCE
Q psy3185 280 YEVVKQVIQGLGFV 293 (298)
Q Consensus 280 ~eEl~~~~~~~GF~ 293 (298)
.+++..++...|.-
T Consensus 199 ~~~~~~~l~~~g~~ 212 (241)
T 3gdh_A 199 IDQVASLAGPGGQV 212 (241)
T ss_dssp HHHHHHTTCTTCCE
T ss_pred HHHHHHHhccCCCE
Confidence 78888888776643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=122.94 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=82.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.+.+.+...++ .++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++...
T Consensus 73 ~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------------------ 129 (269)
T 1p91_A 73 AIVAQLRERLD-----DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------ 129 (269)
T ss_dssp HHHHHHHHHSC-----TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------------
T ss_pred HHHHHHHHhcC-----CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------------------
Confidence 35555565554 24679999999999999999998 789999999999999876510
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.++.+..+|+.+++..+++||+|++.+.. ..++++.++|||||.++.
T Consensus 130 --------------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~~ 176 (269)
T 1p91_A 130 --------------------------PQVTFCVASSHRLPFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVIT 176 (269)
T ss_dssp --------------------------TTSEEEECCTTSCSBCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEEE
T ss_pred --------------------------CCcEEEEcchhhCCCCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEEE
Confidence 14567888887776667899999976542 348999999999999986
Q ss_pred ecc
Q psy3185 260 LGP 262 (298)
Q Consensus 260 ~gP 262 (298)
..|
T Consensus 177 ~~~ 179 (269)
T 1p91_A 177 ATP 179 (269)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=116.35 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHHHhhhc--cCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEE
Q psy3185 72 TDLEKVQTTLKQFVRDWS--EEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQG 146 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs--~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g 146 (298)
.|...|..++.++.+.+. ..-..+.. .++..+....+ +.+|||+|||+|..+..+|+. +..|+|
T Consensus 20 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~~~-------~~~vLdiG~G~G~~~~~la~~~~~~~~v~~ 88 (221)
T 3u81_A 20 GDPQSVLEAIDTYCTQKEWAMNVGDAKG----QIMDAVIREYS-------PSLVLELGAYCGYSAVRMARLLQPGARLLT 88 (221)
T ss_dssp TCHHHHHHHHHHHHHHHTCGGGCCHHHH----HHHHHHHHHHC-------CSEEEEECCTTSHHHHHHHTTSCTTCEEEE
T ss_pred CCHHHHHHHHHHHhhhcCcCcccCHHHH----HHHHHHHHhcC-------CCEEEEECCCCCHHHHHHHHhCCCCCEEEE
Confidence 355678888999887543 22222221 24555544333 569999999999999999984 679999
Q ss_pred eeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-CC---
Q psy3185 147 NEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HP--- 222 (298)
Q Consensus 147 ~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~--- 222 (298)
+|+|+.|+..++..+.... + ..++.+..||+.+... ..
T Consensus 89 vD~~~~~~~~a~~~~~~~~------------------------------------~--~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 89 MEINPDCAAITQQMLNFAG------------------------------------L--QDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp EESCHHHHHHHHHHHHHHT------------------------------------C--GGGEEEEESCHHHHGGGTTTTS
T ss_pred EeCChHHHHHHHHHHHHcC------------------------------------C--CCceEEEECCHHHHHHHHHHhc
Confidence 9999999999887443210 0 1358899999876432 12
Q ss_pred --CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 223 --NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 223 --~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
++||+|+.....+...+..++++.+ ++|||||+++.
T Consensus 131 ~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~ 168 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA 168 (221)
T ss_dssp CCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred CCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence 6899998765555555556777777 99999999984
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=120.17 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=78.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+.+ ..|+|+|+|+.|+..++..... .
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~---~----------------------------- 81 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE---E----------------------------- 81 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH---h-----------------------------
Confidence 46799999999999999999884 5699999999999988763221 0
Q ss_pred CCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCc--chH------HHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCA--NNI------VSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta--~n~------~~yl~~I~~~LkpGG~~In~ 260 (298)
. ..|+.+..+|..++. .++++||.|++.|-.... ... ..+++.++++|||||+++..
T Consensus 82 ----~---l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 82 ----G---LSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp ----T---CSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred ----C---CCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 0 137889999988852 357899999876532211 111 25999999999999999753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=123.19 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=98.8
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~ 160 (298)
=+|.|++.... +...|..-+..- .-.++.+|||+|||+|.++..+|+. | ..|+|+|+|+.|+..++..
T Consensus 51 e~r~w~p~rsk--------laa~i~~gl~~l-~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~ 121 (233)
T 4df3_A 51 EYREWNAYRSK--------LAAALLKGLIEL-PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121 (233)
T ss_dssp EEEECCTTTCH--------HHHHHHTTCSCC-CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH
T ss_pred eeeeECCCchH--------HHHHHHhchhhc-CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Confidence 48889864321 333343322100 0146889999999999999999987 5 4699999999999877652
Q ss_pred HhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCc
Q psy3185 161 LNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCA 237 (298)
Q Consensus 161 l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta 237 (298)
.. + ..|+..+.+|.... ....+++|+|++.+. ..
T Consensus 122 a~---~--------------------------------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~--~~ 158 (233)
T 4df3_A 122 VR---D--------------------------------------RRNIFPILGDARFPEKYRHLVEGVDGLYADVA--QP 158 (233)
T ss_dssp ST---T--------------------------------------CTTEEEEESCTTCGGGGTTTCCCEEEEEECCC--CT
T ss_pred hH---h--------------------------------------hcCeeEEEEeccCccccccccceEEEEEEecc--CC
Confidence 11 1 13555666665432 234578998876543 33
Q ss_pred chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 238 NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 238 ~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+...++.++++.|||||.++..- .+...+....+ .-...+..+.+++.||+++.
T Consensus 159 ~~~~~~l~~~~r~LKpGG~lvI~i--k~r~~d~~~p~--~~~~~~ev~~L~~~GF~l~e 213 (233)
T 4df3_A 159 EQAAIVVRNARFFLRDGGYMLMAI--KARSIDVTTEP--SEVYKREIKTLMDGGLEIKD 213 (233)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEE--ECCHHHHHTCC--CHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHHHhccCCCEEEEEE--ecccCCCCCCh--HHHHHHHHHHHHHCCCEEEE
Confidence 566789999999999999987421 11111100001 11123445667789999875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=113.05 Aligned_cols=104 Identities=18% Similarity=0.058 Sum_probs=77.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.| ..|+|+|+|+.|+..++.......
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------------------------------- 91 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-------------------------------- 91 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC--------------------------------
Confidence 35799999999999999999987 479999999999998887432210
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEecccccCcchHHHHHHHH--HHhccCCeEEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATCFFIDCANNIVSFIETI--FNILKPGGIWINLG 261 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~ffidta~n~~~yl~~I--~~~LkpGG~~In~g 261 (298)
+ ..++.+..+|+.+... .+++||+|++..-.. ..+....++.+ .++|||||+++...
T Consensus 92 ----~--~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 92 ----E--PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp ----C--GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ----C--CcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 0 1367889999887532 267999998863322 23445666666 88999999997543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.4e-13 Score=124.40 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++.
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------------------- 244 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------------------------------- 244 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------------------------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-------------------------------------
Confidence 4679999999999999999986 467999999 887653210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML--- 271 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--- 271 (298)
..++.+..|||.+ +.+.+ |+|++.+.++.. ++....|++++++|||||.++...+..-.....+
T Consensus 245 --------~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~ 313 (368)
T 3reo_A 245 --------FSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIAT 313 (368)
T ss_dssp --------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHH
T ss_pred --------cCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhh
Confidence 1368899999987 33333 999999888733 4566899999999999999876443211100000
Q ss_pred -------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 -------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 -------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+.|.+|+.++++++||++++
T Consensus 314 ~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 351 (368)
T 3reo_A 314 KVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFK 351 (368)
T ss_dssp HHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEE
T ss_pred hHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeE
Confidence 0134567999999999999999875
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=116.38 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=98.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.+++.+.+.++ .++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++......
T Consensus 97 ~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------- 156 (276)
T 2b3t_A 97 CLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL--------------- 156 (276)
T ss_dssp HHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 35566666554 13569999999999999999976 678999999999999988733210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccC----------------------
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDC---------------------- 236 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidt---------------------- 236 (298)
.+ .++.+..+|+.+.. .+++||+|++.. ++..
T Consensus 157 ---------------------~~---~~v~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~ 211 (276)
T 2b3t_A 157 ---------------------AI---KNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAAD 211 (276)
T ss_dssp ---------------------TC---CSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHH
T ss_pred ---------------------CC---CceEEEEcchhhhc-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCC
Confidence 00 25788999987753 367899999862 1111
Q ss_pred --cchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEE
Q psy3185 237 --ANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 237 --a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
......+++.+.++|||||+++...+ + .+.+++.+++++.||+.
T Consensus 212 ~g~~~~~~~l~~~~~~LkpgG~l~~~~~----~----------~~~~~~~~~l~~~Gf~~ 257 (276)
T 2b3t_A 212 SGMADIVHIIEQSRNALVSGGFLLLEHG----W----------QQGEAVRQAFILAGYHD 257 (276)
T ss_dssp HHTHHHHHHHHHHGGGEEEEEEEEEECC----S----------SCHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEEC----c----------hHHHHHHHHHHHCCCcE
Confidence 13567889999999999999874311 1 23789999999999964
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-13 Score=114.30 Aligned_cols=100 Identities=13% Similarity=-0.056 Sum_probs=76.5
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++.+++.+|. .|+|+|+|+.|+..++..+...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~---------------------------------- 100 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL---------------------------------- 100 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 56999999999999999998886 7999999999999988633210
Q ss_pred CCCCCCCCCeeEEecccccc-ccCCCceeEEEecccccCcchHHHHHHHHHH--hccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQV-YVHPNKWDCVATCFFIDCANNIVSFIETIFN--ILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~-~~~~~~fD~V~t~ffidta~n~~~yl~~I~~--~LkpGG~~In 259 (298)
.+ .++.+..+|+.++ ....++||+|++..-.+ ..+....++.+.+ +|||||+++.
T Consensus 101 --~~---~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 101 --KA---GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp --TC---CSEEEECSCHHHHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred --CC---CcEEEEECCHHHHHhhcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEE
Confidence 00 2688999998874 33457899998764322 3456677888865 5999999874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=114.76 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=90.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++. | ..|+|+|+|+.|+..++.....
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------------------------------- 120 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------------------------------- 120 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------------------------------
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------------------------------
Confidence 4679999999999999999987 4 6899999999999877652210
Q ss_pred CCCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC-C
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM-L 271 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~-~ 271 (298)
..++.+..+|+.+.. ..+++||+|++... .......+++.++++|||||+++.. +..... .
T Consensus 121 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~----~~~~~~~~ 185 (227)
T 1g8a_A 121 ---------RRNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA----VKSRSIDV 185 (227)
T ss_dssp ---------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCT
T ss_pred ---------cCCCEEEEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE----EecCCCCC
Confidence 026778888887632 12468999997543 2222345699999999999998754 111111 1
Q ss_pred CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 272 NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 272 ~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..+...++.+++..+ .+. |+++..
T Consensus 186 ~~~~~~~~~~~l~~l-~~~-f~~~~~ 209 (227)
T 1g8a_A 186 TKEPEQVFREVEREL-SEY-FEVIER 209 (227)
T ss_dssp TSCHHHHHHHHHHHH-HTT-SEEEEE
T ss_pred CCChhhhhHHHHHHH-Hhh-ceeeeE
Confidence 112224567888887 677 998753
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-14 Score=120.24 Aligned_cols=123 Identities=13% Similarity=0.041 Sum_probs=77.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+..
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------------------------------- 76 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER--------------------------------- 76 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------------------------------
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 4679999999999999999998 56899999999999888752211
Q ss_pred CCCCCCCCCCCeeEEeccccccccC----CCceeEEEecccccC--------------------------cchHHHHHHH
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH----PNKWDCVATCFFIDC--------------------------ANNIVSFIET 246 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~----~~~fD~V~t~ffidt--------------------------a~n~~~yl~~ 246 (298)
. ..++.+..+|+.+.... .++||+|++..-... ......+++.
T Consensus 77 ------~-~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (215)
T 4dzr_A 77 ------F-GAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL 149 (215)
T ss_dssp -------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred ------h-CCceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence 0 01566788888773321 389999988521110 1112678899
Q ss_pred HHHhccCCeE-EEEeccccccccCCCCCCccCCCHHHHHHHHH--hCCCEEE
Q psy3185 247 IFNILKPGGI-WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQ--GLGFVYE 295 (298)
Q Consensus 247 I~~~LkpGG~-~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~--~~GF~i~ 295 (298)
+.++|||||+ ++..-| .-..+++.++++ +.||..+
T Consensus 150 ~~~~LkpgG~l~~~~~~--------------~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 150 PPYVLARGRAGVFLEVG--------------HNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CGGGBCSSSEEEEEECT--------------TSCHHHHHHHTGGGGGGTEEC
T ss_pred HHHHhcCCCeEEEEEEC--------------CccHHHHHHHHHHhhcCCceE
Confidence 9999999999 443222 113688889998 8898654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-13 Score=123.12 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=99.8
Q ss_pred HHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy3185 106 EILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183 (298)
Q Consensus 106 ~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~ 183 (298)
.+.+.++. .+..+|||+|||+|.++..++++. ..++++|.+. |+. +. +...
T Consensus 175 ~~~~~~~~----~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~---~~~~----------------- 227 (348)
T 3lst_A 175 ILARAGDF----PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RH---RLDA----------------- 227 (348)
T ss_dssp HHHHHSCC----CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TC---CCCC-----------------
T ss_pred HHHHhCCc----cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cc---cccc-----------------
Confidence 44555543 246799999999999999999874 4689999954 433 11 0000
Q ss_pred cccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchH--HHHHHHHHHhccCCeEEEEec
Q psy3185 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI--VSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 184 ~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~--~~yl~~I~~~LkpGG~~In~g 261 (298)
.....++.+..+||.+.. + +||+|++...+++.++. ...+++++++|||||.++...
T Consensus 228 ------------------~~~~~~v~~~~~d~~~~~--p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 228 ------------------PDVAGRWKVVEGDFLREV--P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp ------------------GGGTTSEEEEECCTTTCC--C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred ------------------cCCCCCeEEEecCCCCCC--C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 000147899999996332 2 89999999988877665 799999999999999998654
Q ss_pred cccccccCC-----------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PLLYHYSNM-----------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl~y~~~~~-----------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+..-..... ......+.|.+|+.++++++||++++
T Consensus 287 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 287 AVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332 (348)
T ss_dssp CCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred eccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence 321110000 01133467999999999999999875
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=126.25 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=100.1
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..+.+.++.- .+..+|||+|||+|.++..+++++ ..++++|+ +.|+..++.
T Consensus 198 ~~l~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----------------------- 250 (372)
T 1fp1_D 198 KRMLEIYTGF---EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----------------------- 250 (372)
T ss_dssp HHHHHHCCTT---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------------------
T ss_pred HHHHHHhhcc---CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----------------------
Confidence 4455555411 245799999999999999999985 46888899 888753221
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH--HHHHHHHHhccCCeEEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV--SFIETIFNILKPGGIWINL 260 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~--~yl~~I~~~LkpGG~~In~ 260 (298)
..++.+..+||.+ ..+ . ||+|++...+++.++.. ..+++++++|||||.++..
T Consensus 251 ----------------------~~~v~~~~~d~~~-~~~-~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 251 ----------------------LSGIEHVGGDMFA-SVP-Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp ----------------------CTTEEEEECCTTT-CCC-C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cCCCEEEeCCccc-CCC-C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0258899999977 333 3 99999999998777665 9999999999999998854
Q ss_pred ccccccccCCC---------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 261 GPLLYHYSNML---------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 261 gPl~y~~~~~~---------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+..-.....+ .....+.+.+|+.++++++||++++
T Consensus 306 e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 356 (372)
T 1fp1_D 306 EFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 356 (372)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred EeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEE
Confidence 32210000000 0013456999999999999999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=121.29 Aligned_cols=137 Identities=21% Similarity=0.184 Sum_probs=100.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++.+ ..++++|+ +.|+..++..+...
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 229 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-------------------------------- 229 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--------------------------------
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--------------------------------
Confidence 46799999999999999999885 57899999 99999887633210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchH--HHHHHHHHHhccCCeEEEEeccc-cccccCC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI--VSFIETIFNILKPGGIWINLGPL-LYHYSNM--- 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~--~~yl~~I~~~LkpGG~~In~gPl-~y~~~~~--- 270 (298)
.+ ..++.+..+|+.+.. +..||+|++...++...+. ..++++++++|||||.++...+. .-.....
T Consensus 230 ----~~--~~~v~~~~~d~~~~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~ 301 (360)
T 1tw3_A 230 ----GL--SDRVDVVEGDFFEPL--PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQF 301 (360)
T ss_dssp ----TC--TTTEEEEECCTTSCC--SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHH
T ss_pred ----CC--CCceEEEeCCCCCCC--CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchh
Confidence 00 137889999987632 2359999998888765544 68999999999999998865443 1100000
Q ss_pred --------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 --------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 --------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.......++.+|+.++++++||++++
T Consensus 302 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (360)
T 1tw3_A 302 TELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 335 (360)
T ss_dssp HHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred hhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence 00023457999999999999999875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=122.26 Aligned_cols=140 Identities=13% Similarity=0.132 Sum_probs=100.7
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..+...++.- .+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++.
T Consensus 190 ~~~~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------- 242 (364)
T 3p9c_A 190 KKLLELYHGF---EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------------------- 242 (364)
T ss_dssp HHHHHHCCTT---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------------------
T ss_pred HHHHHhcccc---cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-----------------------
Confidence 4455555511 24679999999999999999986 467999999 777643210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
..++.++.|||.+ +.+.+ |+|++.+.++.. ++....|++++++|||||.++..
T Consensus 243 ----------------------~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 243 ----------------------FPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp ----------------------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ----------------------cCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1378899999987 43343 999999888733 56778999999999999999754
Q ss_pred ccccccccCC----------------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 261 GPLLYHYSNM----------------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 261 gPl~y~~~~~----------------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++.-..... ......+.|.+|+.++++++||++++
T Consensus 298 e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 349 (364)
T 3p9c_A 298 QCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVK 349 (364)
T ss_dssp ECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEE
T ss_pred EeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEE
Confidence 3321100000 01134568899999999999999875
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=124.48 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||||.++..|+++|. .|+|+|+|+.||..+.. .... +.. +
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r---~~~r---------v~~---------------~--- 134 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR---QDDR---------VRS---------------M--- 134 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH---TCTT---------EEE---------------E---
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH---hCcc---------cce---------------e---
Confidence 467999999999999999999986 79999999999976432 1000 000 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-ccccccccCC--C--C
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-GPLLYHYSNM--L--N 272 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-gPl~y~~~~~--~--~ 272 (298)
...++... ++..+ +..+||.|++...+. ++...+.+++++|||||.++.+ .|- |..... . +
T Consensus 135 ------~~~ni~~l--~~~~l--~~~~fD~v~~d~sf~---sl~~vL~e~~rvLkpGG~lv~lvkPq-fe~~~~~~~~~G 200 (291)
T 3hp7_A 135 ------EQYNFRYA--EPVDF--TEGLPSFASIDVSFI---SLNLILPALAKILVDGGQVVALVKPQ-FEAGREQIGKNG 200 (291)
T ss_dssp ------CSCCGGGC--CGGGC--TTCCCSEEEECCSSS---CGGGTHHHHHHHSCTTCEEEEEECGG-GTSCGGGCC-CC
T ss_pred ------cccCceec--chhhC--CCCCCCEEEEEeeHh---hHHHHHHHHHHHcCcCCEEEEEECcc-cccChhhcCCCC
Confidence 00011111 11111 234599877644322 3467899999999999999753 442 211100 0 0
Q ss_pred ----CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 273 ----EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 273 ----~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
......+.+++.+++..+||.+..
T Consensus 201 ~vrd~~~~~~~~~~v~~~~~~~Gf~v~~ 228 (291)
T 3hp7_A 201 IVRESSIHEKVLETVTAFAVDYGFSVKG 228 (291)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 011235789999999999999864
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=118.03 Aligned_cols=131 Identities=11% Similarity=-0.012 Sum_probs=87.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..|++. | ..|+|+|+|+.|+..+......
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-------------------------------- 124 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-------------------------------- 124 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------------------------------
Confidence 4679999999999999999987 3 6899999999988765442111
Q ss_pred CCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN 272 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~ 272 (298)
..++.+..+|+.+. ...+++||+|++... .......++.++.++|||||+++..-+- ...+. .
T Consensus 125 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~--~~~~~-~ 190 (233)
T 2ipx_A 125 ---------RTNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA--NCIDS-T 190 (233)
T ss_dssp ---------CTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH--HHHCS-S
T ss_pred ---------cCCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc--ccccc-C
Confidence 02577888888763 234679999998543 2233356788999999999998742110 00000 0
Q ss_pred CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 273 EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+....-.++ .+++++.||+++.
T Consensus 191 ~~~~~~~~~~-~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 191 ASAEAVFASE-VKKMQQENMKPQE 213 (233)
T ss_dssp SCHHHHHHHH-HHTTGGGTEEEEE
T ss_pred CCHHHHHHHH-HHHHHHCCCceEE
Confidence 0000111233 5888899999875
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=112.23 Aligned_cols=103 Identities=18% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..++++|. .|+|+|+|+.|+..++......
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 77 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 77 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 467999999999999999999974 8999999999999888633210
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHH--HhccCCeEEEEe
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIF--NILKPGGIWINL 260 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~--~~LkpGG~~In~ 260 (298)
.+ ..++.+..+|+.+.. ..+++||+|++..... .....+.++.+. ++|||||+++..
T Consensus 78 ---~~--~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~ 137 (177)
T 2esr_A 78 ---KA--ENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCE 137 (177)
T ss_dssp ---TC--GGGEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---CC--CCceEEEECcHHHhHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEE
Confidence 00 136788999988742 2356799998863221 134556677776 999999999743
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=117.67 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=78.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..||+. +..|+|+|+|..|+..|+..+.......
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~---------------------------- 97 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP---------------------------- 97 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST----------------------------
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH----------------------------
Confidence 4578999999999999999988 4689999999999998876432211000
Q ss_pred CCCCCCCCCCCeeEEeccccc-cc--cCCCceeEEEecccccCcch--------HHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-VY--VHPNKWDCVATCFFIDCANN--------IVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-~~--~~~~~fD~V~t~ffidta~n--------~~~yl~~I~~~LkpGG~~In~ 260 (298)
. ....++.++.+|+.+ +. .++++||.|+.+|--.+... ...+++.++++|||||.++..
T Consensus 98 --~---~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 98 --A---GGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp --T---CCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred --h---cCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 0 001478899999886 43 45789999987653211110 147999999999999999754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=119.04 Aligned_cols=151 Identities=7% Similarity=0.020 Sum_probs=97.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeC-CHHHHHHHHHHHhhhh-hccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEF-SLFMLFASNFILNKCR-EKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~-S~~Ml~~a~~~l~~~~-~~~~~~i~p~~~~~ 179 (298)
+.+.+...... .++.+|||+|||+|.++..+++.|. .|+|+|+ |+.|+..++....... ..+.
T Consensus 67 l~~~l~~~~~~----~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~---------- 132 (281)
T 3bzb_A 67 LADTLCWQPEL----IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCS---------- 132 (281)
T ss_dssp HHHHHHHCGGG----TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHhcchh----cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc----------
Confidence 55566554321 2356999999999999999999998 8999999 8999998876321000 0000
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccc----ccc--CCCceeEEEecccccCcchHHHHHHHHHHhcc-
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQ----VYV--HPNKWDCVATCFFIDCANNIVSFIETIFNILK- 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~----~~~--~~~~fD~V~t~ffidta~n~~~yl~~I~~~Lk- 252 (298)
+.. +...++.+...|..+ +.. .+++||+|+++..+.+.++...+++++.++||
T Consensus 133 ------------~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~ 192 (281)
T 3bzb_A 133 ------------SET--------VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLAL 192 (281)
T ss_dssp --------------------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCC
T ss_pred ------------ccc--------CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcc
Confidence 000 001245555333222 211 35789999988877778889999999999999
Q ss_pred --C--CeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCC-CEEEE
Q psy3185 253 --P--GGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLG-FVYEV 296 (298)
Q Consensus 253 --p--GG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~G-F~i~~ 296 (298)
| ||.++. +.|.. +.+.-..+++.+.+++.| |+++.
T Consensus 193 ~~p~~gG~l~v~~~~~~---------~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 193 PANDPTAVALVTFTHHR---------PHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp TTTCTTCEEEEEECC-----------------CTHHHHHHHHSTTEEEEE
T ss_pred cCCCCCCEEEEEEEeee---------cccchhHHHHHHHHHhcCCEEEEE
Confidence 9 997543 33310 111222467788888999 99875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=118.49 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPW 175 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~ 175 (298)
.|...+..+...+.. .++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+.....
T Consensus 83 ~~~~~~~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g--------- 149 (280)
T 1i9g_A 83 IYPKDAAQIVHEGDI----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--------- 149 (280)
T ss_dssp CCHHHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---------
T ss_pred ecHHHHHHHHHHcCC----CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---------
Confidence 456566666666542 34679999999999999999986 67899999999999988764321000
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCe
Q psy3185 176 VQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 176 ~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG 255 (298)
. + ..++.+..+|+.+...++++||+|++.. .+...+++.+.++|||||
T Consensus 150 --------------------~-----~--~~~v~~~~~d~~~~~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG 197 (280)
T 1i9g_A 150 --------------------Q-----P--PDNWRLVVSDLADSELPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGG 197 (280)
T ss_dssp --------------------S-----C--CTTEEEECSCGGGCCCCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEE
T ss_pred --------------------C-----C--CCcEEEEECchHhcCCCCCceeEEEECC-----cCHHHHHHHHHHhCCCCC
Confidence 0 0 1367889999988765578999998732 345588999999999999
Q ss_pred EEEEecc
Q psy3185 256 IWINLGP 262 (298)
Q Consensus 256 ~~In~gP 262 (298)
.++...|
T Consensus 198 ~l~~~~~ 204 (280)
T 1i9g_A 198 VLMVYVA 204 (280)
T ss_dssp EEEEEES
T ss_pred EEEEEeC
Confidence 9987655
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=113.62 Aligned_cols=133 Identities=13% Similarity=0.162 Sum_probs=103.0
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+..+.++++ ++.+|||+|||+|.++..+|+.|. .|+|+|+|+.|+..|+.-....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~----------------- 68 (230)
T 3lec_A 12 LQKVANYVP------KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH----------------- 68 (230)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhCC------CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 456677665 357999999999999999999984 5999999999999998733210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.+ ..++.+..||..+...+.++||+|+.+-.. ..-+.+.++...+.|+++|.+| +.
T Consensus 69 -------------------gl--~~~I~~~~gD~l~~~~~~~~~D~IviaGmG--g~lI~~IL~~~~~~l~~~~~lI-lq 124 (230)
T 3lec_A 69 -------------------GL--TSKIDVRLANGLSAFEEADNIDTITICGMG--GRLIADILNNDIDKLQHVKTLV-LQ 124 (230)
T ss_dssp -------------------TC--TTTEEEEECSGGGGCCGGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEE-EE
T ss_pred -------------------CC--CCcEEEEECchhhccccccccCEEEEeCCc--hHHHHHHHHHHHHHhCcCCEEE-EE
Confidence 01 136889999988876544579988765432 3457788999999999999888 44
Q ss_pred cccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 PLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 Pl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|. ...+++++++.+.||.+++|
T Consensus 125 p~--------------~~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 125 PN--------------NREDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp ES--------------SCHHHHHHHHHHTTEEEEEE
T ss_pred CC--------------CChHHHHHHHHHCCCEEEEE
Confidence 42 12889999999999999886
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=112.87 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=101.1
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+..+.++++ ++.+|||+|||+|.++..+|+.|. .|+|+|+|+.++..|+.-....
T Consensus 6 L~~l~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~----------------- 62 (225)
T 3kr9_A 6 LELVASFVS------QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH----------------- 62 (225)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhCC------CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 456666665 357999999999999999999974 5999999999999988732210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.+ ..++.+..||..+...+.++||+|+.+-. ...-+.+.++...+.|+|||.+| +.
T Consensus 63 -------------------gl--~~~i~~~~~d~l~~l~~~~~~D~IviaG~--Gg~~i~~Il~~~~~~L~~~~~lV-lq 118 (225)
T 3kr9_A 63 -------------------GL--KEKIQVRLANGLAAFEETDQVSVITIAGM--GGRLIARILEEGLGKLANVERLI-LQ 118 (225)
T ss_dssp -------------------TC--TTTEEEEECSGGGGCCGGGCCCEEEEEEE--CHHHHHHHHHHTGGGCTTCCEEE-EE
T ss_pred -------------------CC--CceEEEEECchhhhcccCcCCCEEEEcCC--ChHHHHHHHHHHHHHhCCCCEEE-EE
Confidence 01 13688999998665433337998887643 23346788999999999999888 34
Q ss_pred cccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 PLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 Pl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|. -..+.+++++.+.||.++.|
T Consensus 119 ~~--------------~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 119 PN--------------NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp ES--------------SCHHHHHHHHHHTTEEEEEE
T ss_pred CC--------------CCHHHHHHHHHHCCCEEEEE
Confidence 43 13789999999999999876
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=112.40 Aligned_cols=108 Identities=18% Similarity=0.058 Sum_probs=82.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+...+.+.+.. .++.+|||+|||+|.++..+++.+ ..|+|+|.|+.|+..++..+....
T Consensus 65 ~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------------- 126 (215)
T 2yxe_A 65 MVGMMCELLDL----KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-------------- 126 (215)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHhhCC----CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--------------
Confidence 45555555542 246799999999999999999986 789999999999998887432200
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.+..+|+.......++||+|++...+++.. +.+.++|||||.++.
T Consensus 127 -------------------------~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~ 175 (215)
T 2yxe_A 127 -------------------------YDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLM 175 (215)
T ss_dssp -------------------------CTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred -------------------------CCCeEEEECCcccCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEE
Confidence 0257788888865544467899999988887665 488999999999874
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=116.30 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=98.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
-...+...+.. .++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++..+...
T Consensus 100 ~~~~i~~~~~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------- 160 (277)
T 1o54_A 100 DSSFIAMMLDV----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--------------- 160 (277)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhCC----CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 33444444432 34679999999999999999988 468999999999999888643210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++.+..+|+.+. .++++||+|++. .++...+++.+.++|||||.++.
T Consensus 161 ---------------------~~--~~~v~~~~~d~~~~-~~~~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~ 211 (277)
T 1o54_A 161 ---------------------GL--IERVTIKVRDISEG-FDEKDVDALFLD-----VPDPWNYIDKCWEALKGGGRFAT 211 (277)
T ss_dssp ---------------------TC--GGGEEEECCCGGGC-CSCCSEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEE
T ss_pred ---------------------CC--CCCEEEEECCHHHc-ccCCccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEE
Confidence 00 02677888998877 345789999873 34556889999999999999987
Q ss_pred eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|... ..+++.+.+++.||..+.
T Consensus 212 ~~~~~~-------------~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 212 VCPTTN-------------QVQETLKKLQELPFIRIE 235 (277)
T ss_dssp EESSHH-------------HHHHHHHHHHHSSEEEEE
T ss_pred EeCCHH-------------HHHHHHHHHHHCCCceeE
Confidence 655211 146778888889998764
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-13 Score=116.61 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|..+..+|+ .+..|+|+|+|+.|+..++..+...
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 118 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY--------------------------------- 118 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 57999999999999999999 4678999999999999988744321
Q ss_pred CCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.+ ..++.+..+|+.+... .+++||+|++.. ...+...+++.+.++|||||+++.-.
T Consensus 119 ---~~--~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 119 ---HF--ENQVRIIEGNALEQFENVNDKVYDMIFIDA---AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp ---TC--TTTEEEEESCGGGCHHHHTTSCEEEEEEET---TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ---CC--CCcEEEEECCHHHHHHhhccCCccEEEEcC---cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 01 1378899999987643 268999998543 35567889999999999999998533
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=114.27 Aligned_cols=120 Identities=9% Similarity=0.127 Sum_probs=89.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.++..|....+. .++.+|||+|||+|..+..+|+. +..|+++|.|+.|+..++..+....
T Consensus 43 ~~l~~l~~~~~~----~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------------- 105 (221)
T 3dr5_A 43 QLLTTLAATTNG----NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG------------- 105 (221)
T ss_dssp HHHHHHHHHSCC----TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHhhCC----CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------------
Confidence 366666665542 23559999999999999999985 6789999999999999887443210
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC--CCceeEEEecccccCcchHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH--PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~--~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~ 256 (298)
+. ..++.+..||+.++... +++||+|+... ...+...|++.+.++|||||+
T Consensus 106 -----------------------~~-~~~i~~~~gda~~~l~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~ 158 (221)
T 3dr5_A 106 -----------------------YS-PSRVRFLLSRPLDVMSRLANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGGA 158 (221)
T ss_dssp -----------------------CC-GGGEEEECSCHHHHGGGSCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEEE
T ss_pred -----------------------CC-cCcEEEEEcCHHHHHHHhcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCcE
Confidence 00 03788999998876532 58999996543 345677899999999999999
Q ss_pred EEEecccccc
Q psy3185 257 WINLGPLLYH 266 (298)
Q Consensus 257 ~In~gPl~y~ 266 (298)
++. .-.+|+
T Consensus 159 lv~-dn~~~~ 167 (221)
T 3dr5_A 159 LVL-ADALLD 167 (221)
T ss_dssp EEE-TTTTGG
T ss_pred EEE-eCCCCC
Confidence 984 334454
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=124.97 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=89.7
Q ss_pred hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccc
Q psy3185 93 SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYK 171 (298)
Q Consensus 93 ~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~ 171 (298)
+..|...|..-+..-...++ +..|||+|||+|-|+...|+.|. .|+|+|.|+ |+..|+.+... |
T Consensus 64 D~~Rt~aY~~Ai~~~~~~~~-------~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~----n--- 128 (376)
T 4hc4_A 64 DRVRTDAYRLGILRNWAALR-------GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRF----N--- 128 (376)
T ss_dssp CHHHHHHHHHHHHTTHHHHT-------TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHH----T---
T ss_pred CHHHHHHHHHHHHhCHHhcC-------CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHH----c---
Confidence 34666667654432222332 56899999999999999999997 599999995 88888775432 0
Q ss_pred cccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe---cccccCcchHHHHHHHHH
Q psy3185 172 IYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---CFFIDCANNIVSFIETIF 248 (298)
Q Consensus 172 i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~ffidta~n~~~yl~~I~ 248 (298)
.+ ...+.++.||..++.. ++++|+|+| .+++.....+..++....
T Consensus 129 -----------------------------~~--~~~i~~i~~~~~~~~l-pe~~DvivsE~~~~~l~~e~~l~~~l~a~~ 176 (376)
T 4hc4_A 129 -----------------------------GL--EDRVHVLPGPVETVEL-PEQVDAIVSEWMGYGLLHESMLSSVLHART 176 (376)
T ss_dssp -----------------------------TC--TTTEEEEESCTTTCCC-SSCEEEEECCCCBTTBTTTCSHHHHHHHHH
T ss_pred -----------------------------CC--CceEEEEeeeeeeecC-CccccEEEeecccccccccchhhhHHHHHH
Confidence 01 1468899999988754 479999998 355666667889999999
Q ss_pred HhccCCeEEE
Q psy3185 249 NILKPGGIWI 258 (298)
Q Consensus 249 ~~LkpGG~~I 258 (298)
++|||||.+|
T Consensus 177 r~Lkp~G~~i 186 (376)
T 4hc4_A 177 KWLKEGGLLL 186 (376)
T ss_dssp HHEEEEEEEE
T ss_pred hhCCCCceEC
Confidence 9999999987
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=111.77 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=80.6
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..+|+. +..|+|+|.|+.|+..++..+...
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 106 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA-------------------------------- 106 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 579999999999999999998 789999999999999888743321
Q ss_pred CCCCCCCCCCCeeEEeccccccccC-----CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH-----PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~-----~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
.+ ..++.+..||+.+.... .++||+|+.... ..+...+++.+.++|||||+++.-.++
T Consensus 107 ----~~--~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 107 ----NL--NDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ----TC--TTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred ----CC--CCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 00 13688999998765321 267999976432 456778999999999999988865554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=124.00 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=96.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|||+|.++..++++ +.+++|+|+ +.|+..++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------------------- 229 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------------------------------------- 229 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------------------------------------
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-------------------------------------
Confidence 3579999999999999999987 578999999 988754321
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH--HHHHHHHHhccC---CeEEEEecccccccc---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV--SFIETIFNILKP---GGIWINLGPLLYHYS--- 268 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~--~yl~~I~~~Lkp---GG~~In~gPl~y~~~--- 268 (298)
..++.+..+|+.+ ..+ .||+|++.+.+++..+.. ..+++++++||| ||.++...+..-...
T Consensus 230 --------~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~ 298 (352)
T 1fp2_A 230 --------SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN 298 (352)
T ss_dssp --------BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCH
T ss_pred --------CCCcEEEeccccC-CCC--CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCcc
Confidence 0247889999976 222 399999999888776665 999999999999 999875433211000
Q ss_pred ---------CC--CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 269 ---------NM--LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 ---------~~--~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+. ......+.+.+|+.++++++||++++
T Consensus 299 ~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 337 (352)
T 1fp2_A 299 QVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 337 (352)
T ss_dssp HHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred chhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeE
Confidence 00 00013457899999999999999875
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=113.69 Aligned_cols=102 Identities=17% Similarity=0.049 Sum_probs=80.5
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..+|+. +..|+|+|+|+.|+..++..+...
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 111 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA-------------------------------- 111 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 569999999999999999998 789999999999999988744321
Q ss_pred CCCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+ ..++.+..||+.+... ..++||+|+... ...+...|++.+.++|||||++|.-..
T Consensus 112 ----g~--~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 112 ----GV--DQRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ----TC--TTTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ----CC--CCcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 01 1378899999877432 235999998643 355678899999999999999885443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=121.76 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+.|. .|+|+|.|+ |+..++......
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------------------------------- 95 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------------------------------- 95 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT---------------------------------
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHc---------------------------------
Confidence 467999999999999999999986 899999995 988777643320
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.+..+|+.++.. +++||+|++..+.. ..+++...+..+.++|||||+++
T Consensus 96 ---~l--~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 96 ---NL--TDRIVVIPGKVEEVSL-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp ---TC--TTTEEEEESCTTTCCC-SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ---CC--CCcEEEEEcchhhCCC-CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence 01 1368899999988753 47899999875433 23557788889999999999997
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=119.44 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe---EEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV---CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~---v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+++.+.+.+.. .++.+|||+|||+|.++..+|+.+.. |+|+|+|+.|+..++..+...
T Consensus 63 ~~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------- 123 (317)
T 1dl5_A 63 LMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL--------------- 123 (317)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHhcCC----CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 45555555542 24679999999999999999998765 999999999999888743210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.+..+|+.+.....++||+|++...++... +.+.++|||||+++.
T Consensus 124 ---------------------g~---~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi 173 (317)
T 1dl5_A 124 ---------------------GI---ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIV 173 (317)
T ss_dssp ---------------------TC---CSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEE
T ss_pred ---------------------CC---CCeEEEECChhhccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEE
Confidence 00 257889999988655568999999998887665 578899999999864
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=120.38 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=92.4
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|+.|..|+|+|+|+.|+..++......
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~----------------------------------- 198 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA----------------------------------- 198 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----------------------------------
Confidence 569999999999999999999999999999999999887632210
Q ss_pred CCCCCCCCeeEEeccccccccC----CCceeEEEec---cccc-------CcchHHHHHHHHHHhccCCeEEEEeccccc
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVH----PNKWDCVATC---FFID-------CANNIVSFIETIFNILKPGGIWINLGPLLY 265 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~----~~~fD~V~t~---ffid-------ta~n~~~yl~~I~~~LkpGG~~In~gPl~y 265 (298)
.+. ..++.++.+|+.++... .++||+|++. |... ...+...+++.+.++|||||+++....
T Consensus 199 -gl~-~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~--- 273 (332)
T 2igt_A 199 -GLE-QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA--- 273 (332)
T ss_dssp -TCT-TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE---
T ss_pred -CCC-ccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC---
Confidence 000 01478999998876432 5789999883 3322 234567899999999999998653211
Q ss_pred cccCCCCCCccCCCHHHHHHHHH----hCCCEEE
Q psy3185 266 HYSNMLNEDSIEPSYEVVKQVIQ----GLGFVYE 295 (298)
Q Consensus 266 ~~~~~~~~~~~~ls~eEl~~~~~----~~GF~i~ 295 (298)
.+..++.+++..++. +.|+++.
T Consensus 274 --------~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 274 --------YSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp --------CCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred --------CCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 123345666666665 7888875
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-13 Score=131.67 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=75.5
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||.|.++..||++|++|+|+|.|+.|+..|+. ++.+.
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~---~a~~~-------------------------------- 111 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA---LAEEN-------------------------------- 111 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHHTS--------------------------------
T ss_pred CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH---HHHhc--------------------------------
Confidence 5799999999999999999999999999999999999986 32210
Q ss_pred CCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcchHH--HHHHHHHHhccCCe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANNIV--SFIETIFNILKPGG 255 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n~~--~yl~~I~~~LkpGG 255 (298)
...++.+..++..++. .++++||+|++.-++++.++.. ..+..+.+.|+++|
T Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~ 167 (569)
T 4azs_A 112 ----PDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVT 167 (569)
T ss_dssp ----TTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred ----CCCceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhcccc
Confidence 0136889999988873 3568999999998888877654 23444555566554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-12 Score=112.80 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=101.7
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+..+.++++ ++.+|||+|||+|.++..+|+.|. .|+|+|+|+.|+..|+.-....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~----------------- 68 (244)
T 3gnl_A 12 LEKVASYIT------KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS----------------- 68 (244)
T ss_dssp HHHHHTTCC------SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhCC------CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 456677665 357999999999999999999984 5999999999999998732210
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
.+ ..++.+..||..+...+.++||+|+++-.- ..-+.+.++...+.|+++|.+| +.
T Consensus 69 -------------------gl--~~~I~v~~gD~l~~~~~~~~~D~IviagmG--g~lI~~IL~~~~~~L~~~~~lI-lq 124 (244)
T 3gnl_A 69 -------------------GL--TEQIDVRKGNGLAVIEKKDAIDTIVIAGMG--GTLIRTILEEGAAKLAGVTKLI-LQ 124 (244)
T ss_dssp -------------------TC--TTTEEEEECSGGGGCCGGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEE-EE
T ss_pred -------------------CC--CceEEEEecchhhccCccccccEEEEeCCc--hHHHHHHHHHHHHHhCCCCEEE-EE
Confidence 00 136889999988876443469998865322 2457788999999999999888 44
Q ss_pred cccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 PLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 Pl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|.. ..+++++++.+.||.+++|
T Consensus 125 ~~~--------------~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 125 PNI--------------AAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp ESS--------------CHHHHHHHHHHHTEEEEEE
T ss_pred cCC--------------ChHHHHHHHHHCCCEEEEE
Confidence 421 2789999999999999776
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=111.69 Aligned_cols=112 Identities=9% Similarity=0.019 Sum_probs=84.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+....+ +.+|||+|||+|..+..+|+. +..|+|+|.|+.|+..++..+...
T Consensus 55 ~l~~l~~~~~-------~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------- 112 (225)
T 3tr6_A 55 LLALLVKLMQ-------AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA--------------- 112 (225)
T ss_dssp HHHHHHHHHT-------CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHhhC-------CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC---------------
Confidence 5555554433 469999999999999999997 789999999999999988744321
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC--C----CceeEEEecccccCcchHHHHHHHHHHhccC
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH--P----NKWDCVATCFFIDCANNIVSFIETIFNILKP 253 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~--~----~~fD~V~t~ffidta~n~~~yl~~I~~~Lkp 253 (298)
....++.+..+|+.+.... . ++||+|+... ...+...+++.+.++|||
T Consensus 113 -----------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~p 166 (225)
T 3tr6_A 113 -----------------------GLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLRE 166 (225)
T ss_dssp -----------------------TCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEE
T ss_pred -----------------------CCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCC
Confidence 0013588999998765321 1 7999998433 345678899999999999
Q ss_pred CeEEEEecc
Q psy3185 254 GGIWINLGP 262 (298)
Q Consensus 254 GG~~In~gP 262 (298)
||+++....
T Consensus 167 gG~lv~~~~ 175 (225)
T 3tr6_A 167 GGLIAVDNV 175 (225)
T ss_dssp EEEEEEECS
T ss_pred CcEEEEeCC
Confidence 999985443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=116.35 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=78.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHHHHHhhhh--hcccc-----cccccccccccccccc-
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLFASNFILNKCR--EKNVY-----KIYPWVQQTDNNILTH- 186 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~~~l~~~~--~~~~~-----~i~p~~~~~s~~~~~~- 186 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..|+..+.... ..... ..|......+ .....
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPS-YLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhccccc-chhhhh
Confidence 4579999999999999999987 5789999999999999886432210 00000 0000000000 00000
Q ss_pred --cccc-ccccCCCCCCCCCCCCCeeEEecccccccc-----CCCceeEEEecc-ccc--C------cchHHHHHHHHHH
Q psy3185 187 --HQTM-AVTFPDINTSDYNDDCDFSMAAGDFLQVYV-----HPNKWDCVATCF-FID--C------ANNIVSFIETIFN 249 (298)
Q Consensus 187 --~~~r-~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-----~~~~fD~V~t~f-fid--t------a~n~~~yl~~I~~ 249 (298)
+.++ ..+... ......+..+|+.+... ..++||+|++.. ++. . ......+++.+++
T Consensus 130 ~~~~v~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 130 AARRLRERLTAEG-------GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHHTT-------SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccc-------cccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence 0000 000000 00112388899877542 335899999863 221 1 2456789999999
Q ss_pred hccCCeEEEEe
Q psy3185 250 ILKPGGIWINL 260 (298)
Q Consensus 250 ~LkpGG~~In~ 260 (298)
+|||||+++..
T Consensus 203 ~LkpgG~l~~~ 213 (250)
T 1o9g_A 203 ALPAHAVIAVT 213 (250)
T ss_dssp HSCTTCEEEEE
T ss_pred hcCCCcEEEEe
Confidence 99999999853
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=121.44 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=85.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
....+.+.++. ..+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|+..++..+...
T Consensus 184 ~~~~ll~~l~~----~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~---------------- 243 (343)
T 2pjd_A 184 GSQLLLSTLTP----HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN---------------- 243 (343)
T ss_dssp HHHHHHHHSCT----TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhcCc----CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------------
Confidence 34555666632 135699999999999999999987 58999999999999888743210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC-----cchHHHHHHHHHHhccCCe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC-----ANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt-----a~n~~~yl~~I~~~LkpGG 255 (298)
.....+..+|+.+.. +++||+|++...++. ..+...++++++++|||||
T Consensus 244 ------------------------~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG 297 (343)
T 2pjd_A 244 ------------------------GVEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGG 297 (343)
T ss_dssp ------------------------TCCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEE
T ss_pred ------------------------CCCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCc
Confidence 012446778876653 679999999765552 4567889999999999999
Q ss_pred EEEEecc
Q psy3185 256 IWINLGP 262 (298)
Q Consensus 256 ~~In~gP 262 (298)
.++.+.+
T Consensus 298 ~l~i~~~ 304 (343)
T 2pjd_A 298 ELRIVAN 304 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9986544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=109.95 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=77.3
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..+|+. +..|+|+|+|+.|+..++..+....
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------------------------- 105 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG------------------------------- 105 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS-------------------------------
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-------------------------------
Confidence 469999999999999999987 6799999999999998887433210
Q ss_pred CCCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+ ..++.+..+|+.+.. ..++ ||+|++.. ...+...+++.+.++|||||+++.
T Consensus 106 -----~--~~~v~~~~~d~~~~~~~~~~-fD~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 106 -----L--IDRVELQVGDPLGIAAGQRD-IDILFMDC---DVFNGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp -----G--GGGEEEEESCHHHHHTTCCS-EEEEEEET---TTSCHHHHHHHHGGGEEEEEEEEE
T ss_pred -----C--CceEEEEEecHHHHhccCCC-CCEEEEcC---ChhhhHHHHHHHHHhcCCCeEEEE
Confidence 0 125788999987653 2346 99998653 245678999999999999999985
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-12 Score=117.38 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=95.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+...+....+. .++.+|||||||+|.++.++|..+ ..|+|+|+|+.|+..|+..+...
T Consensus 191 la~~l~~~~~~----~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~--------------- 251 (354)
T 3tma_A 191 LAQALLRLADA----RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS--------------- 251 (354)
T ss_dssp HHHHHHHHTTC----CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhCC----CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc---------------
Confidence 44555555442 246799999999999999999976 78999999999999988733210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccc--cCcch----HHHHHHHHHHhc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFI--DCANN----IVSFIETIFNIL 251 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffi--dta~n----~~~yl~~I~~~L 251 (298)
.+ .++.+..+|+.++....+.||+|++. |.. ....+ ...+++.+.++|
T Consensus 252 ---------------------g~---~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~L 307 (354)
T 3tma_A 252 ---------------------GL---SWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALL 307 (354)
T ss_dssp ---------------------TC---TTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTS
T ss_pred ---------------------CC---CceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhc
Confidence 01 16789999999987666789999984 322 11122 257899999999
Q ss_pred cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 252 KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 252 kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
||||.++.+.| +.+.+..+.+ .||++.+
T Consensus 308 kpgG~l~i~t~----------------~~~~~~~~~~-~g~~~~~ 335 (354)
T 3tma_A 308 PPGGRVALLTL----------------RPALLKRALP-PGFALRH 335 (354)
T ss_dssp CTTCEEEEEES----------------CHHHHHHHCC-TTEEEEE
T ss_pred CCCcEEEEEeC----------------CHHHHHHHhh-cCcEEEE
Confidence 99999886543 1333444554 7777654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-12 Score=111.66 Aligned_cols=132 Identities=14% Similarity=0.018 Sum_probs=83.6
Q ss_pred CCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
.++.+|||+|||+|..+..+|+. | ..|+|+|+|+.|+...... +..
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~---a~~---------------------------- 123 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLV---AQR---------------------------- 123 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHH---HHH----------------------------
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHH---hhh----------------------------
Confidence 35789999999999999999986 3 4899999999997533221 111
Q ss_pred CCCCCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCcchHHHH-HHHHHHhccCCeEEEEeccccccccCC
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCANNIVSF-IETIFNILKPGGIWINLGPLLYHYSNM 270 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta~n~~~y-l~~I~~~LkpGG~~In~gPl~y~~~~~ 270 (298)
..|+.+..+|...... ..++||+|++.... ++.... +..+.++|||||.++.. .+.....
T Consensus 124 ----------r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvis---ik~~~~d 187 (232)
T 3id6_C 124 ----------RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLV---IKARSID 187 (232)
T ss_dssp ----------CTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEE---EC-----
T ss_pred ----------cCCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEE---EccCCcc
Confidence 0267777888765421 24689999876533 444444 45666699999999853 1221100
Q ss_pred CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 271 LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 271 ~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.....-+.. ++....+++.||++++.
T Consensus 188 ~t~~~~e~~-~~~~~~L~~~gf~~~~~ 213 (232)
T 3id6_C 188 VTKDPKEIY-KTEVEKLENSNFETIQI 213 (232)
T ss_dssp --CCSSSST-THHHHHHHHTTEEEEEE
T ss_pred cCCCHHHHH-HHHHHHHHHCCCEEEEE
Confidence 000111222 44556667889999764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=122.47 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
..++..+.+.+.. .++.+|||+|||+|+++..+|+. |. .|+|+|.|+.|+..|..++....+. .
T Consensus 228 p~~v~~ml~~l~l----~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~--~-------- 293 (433)
T 1u2z_A 228 PNFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR--C-------- 293 (433)
T ss_dssp HHHHHHHHHHTTC----CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH--H--------
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHH--H--------
Confidence 4566666666542 35679999999999999999996 64 6999999999999884433321110 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEecc-ccc---cccCCCceeEEEecccccCcchHHHHHHHHHHhccCC
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGD-FLQ---VYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gD-f~~---~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG 254 (298)
+ .. .+. ..++.+..|| +.. +....++||+|++..++ ..+++...|+++.++||||
T Consensus 294 -----------~-----~~---Gl~-~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 294 -----------K-----LY---GMR-LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVG 352 (433)
T ss_dssp -----------H-----HT---TBC-CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTT
T ss_pred -----------H-----Hc---CCC-CCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCC
Confidence 0 00 000 0367787764 432 11124789999876444 3468889999999999999
Q ss_pred eEEEEecc
Q psy3185 255 GIWINLGP 262 (298)
Q Consensus 255 G~~In~gP 262 (298)
|.++...|
T Consensus 353 G~lVi~d~ 360 (433)
T 1u2z_A 353 CKIISLKS 360 (433)
T ss_dssp CEEEESSC
T ss_pred eEEEEeec
Confidence 99987543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-11 Score=113.72 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
...+|||+|||+|.++..|+++. ..++..|. +.|+..++.....
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~--------------------------------- 224 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF--------------------------------- 224 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---------------------------------
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------------------------------
Confidence 35699999999999999999984 45777786 7888887752210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccccccccCCC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYHYSNML--- 271 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--- 271 (298)
....+++++.|||.+-+ ...+|+|+....|+.-+ +....|+++++.|||||.++.+.+++-.....+
T Consensus 225 ------~~~~rv~~~~gD~~~~~--~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~ 296 (353)
T 4a6d_A 225 ------QEEEQIDFQEGDFFKDP--LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLT 296 (353)
T ss_dssp --------CCSEEEEESCTTTSC--CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHH
T ss_pred ------cccCceeeecCccccCC--CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHH
Confidence 11258999999997653 34579999988887543 356889999999999999886554321111000
Q ss_pred ---------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ---------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ---------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+.|.+|++++++++||++++
T Consensus 297 ~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 297 QLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp HHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 0134578999999999999999875
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=106.14 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+ |+..
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------------------------------- 61 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------------------------------- 61 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------------------------------
Confidence 4679999999999999999987 37899999999 7421
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--------cCCCceeEEEecccccCcchH-----------HHHHHHHHHhccCCeE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--------VHPNKWDCVATCFFIDCANNI-----------VSFIETIFNILKPGGI 256 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--------~~~~~fD~V~t~ffidta~n~-----------~~yl~~I~~~LkpGG~ 256 (298)
.++.+..+|+.+.. .++++||+|++...+++..+. ..+++++.++|||||.
T Consensus 62 ----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 131 (180)
T 1ej0_A 62 ----------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp ----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ----------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcE
Confidence 14567778887764 456899999987655544333 6899999999999999
Q ss_pred EEEec
Q psy3185 257 WINLG 261 (298)
Q Consensus 257 ~In~g 261 (298)
++...
T Consensus 132 l~~~~ 136 (180)
T 1ej0_A 132 FVVKV 136 (180)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=108.71 Aligned_cols=113 Identities=16% Similarity=0.051 Sum_probs=85.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
....+....+. .++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++......
T Consensus 79 ~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 136 (248)
T 2yvl_A 79 DSFYIALKLNL----NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF------------------ 136 (248)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHT------------------
T ss_pred hHHHHHHhcCC----CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc------------------
Confidence 34455555442 24679999999999999999999889999999999999888643210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+ ..++.+..+|+.+....+++||+|++. .++...+++.+.++|||||.++...|
T Consensus 137 ------------------~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 137 ------------------NL--GKNVKFFNVDFKDAEVPEGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ------------------TC--CTTEEEECSCTTTSCCCTTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ------------------CC--CCcEEEEEcChhhcccCCCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 00 136778888888764245789999873 33556789999999999999986655
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-12 Score=119.52 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=84.9
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..+.+.++. ..+.+|||+|||+|.++..++++ +.+|+|+|+|+.|+..++..+....
T Consensus 212 ~~ll~~l~~----~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ng----------------- 270 (375)
T 4dcm_A 212 RFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM----------------- 270 (375)
T ss_dssp HHHHHTCCC----SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHhCcc----cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcC-----------------
Confidence 445566653 23579999999999999999998 5789999999999998887332100
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC-----cchHHHHHHHHHHhccCCeEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC-----ANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt-----a~n~~~yl~~I~~~LkpGG~~ 257 (298)
+ ....++.+..+|+.+.. .+++||+|++..-++. ......+++.+.++|||||.+
T Consensus 271 -----------l--------~~~~~v~~~~~D~~~~~-~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l 330 (375)
T 4dcm_A 271 -----------P--------EALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 330 (375)
T ss_dssp -----------G--------GGGGGEEEEECSTTTTC-CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEE
T ss_pred -----------C--------CcCceEEEEechhhccC-CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEE
Confidence 0 00125778899988743 5679999998744332 222347899999999999999
Q ss_pred EEecc
Q psy3185 258 INLGP 262 (298)
Q Consensus 258 In~gP 262 (298)
+.+++
T Consensus 331 ~iv~n 335 (375)
T 4dcm_A 331 YIVAN 335 (375)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 86543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=117.36 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCeEEEecccCcH----HHHHHHHc------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc--cccc-cccccccc
Q psy3185 120 DVNILVPGAGLGR----LAFEIARR------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP--WVQQ-TDNNILTH 186 (298)
Q Consensus 120 ~~~VLdpGcG~Gr----la~ela~~------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p--~~~~-~s~~~~~~ 186 (298)
+.+|||+|||||. +|..|++. +++|+|+|+|+.||..|+.- .-......-.| +... +.......
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~---~y~~~~~~~~~~~~~~~~f~~~~~~~ 182 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG---IYRLSELKTLSPQQLQRYFMRGTGPH 182 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT---EEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhc---CCchhhhhcCCHHHHHHHhhccccCC
Confidence 5799999999999 55555554 47899999999999998861 10000000000 0000 00000000
Q ss_pred cccccccc-CCCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEE
Q psy3185 187 HQTMAVTF-PDINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 187 ~~~r~~~i-pd~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~I 258 (298)
+ ..+.+ |.+ ..++.+..+|..+.+.+ .++||+|++...+... +.....++.+++.|||||+++
T Consensus 183 ~--~~~~v~~~l-------r~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~ 249 (274)
T 1af7_A 183 E--GLVRVRQEL-------ANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF 249 (274)
T ss_dssp C--SEEEECHHH-------HTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred C--Cceeechhh-------cccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 0 00011 000 13688999999885333 5789999987665433 345789999999999999987
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-12 Score=109.32 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=77.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-------eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-------VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMA 191 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-------~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~ 191 (298)
++.+|||+|||+|.++..+++.+. .|+|+|.|+.|+..++..+.... ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~-------------------- 135 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK----PE-------------------- 135 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC----GG--------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC----cc--------------------
Confidence 467999999999999999999864 89999999999999887433210 00
Q ss_pred cccCCCCCCCCCCCCCeeEEeccccccc----cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 192 VTFPDINTSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 192 ~~ipd~~~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.+..+|+.+.. ...++||+|++...++.. ++.+.++|||||+++.
T Consensus 136 ----~~------~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 136 ----LL------KIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLII 191 (227)
T ss_dssp ----GG------SSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEE
T ss_pred ----cc------ccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEE
Confidence 00 0136888999988765 456789999887766543 5888999999999874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-12 Score=109.87 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=79.8
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|+. +..|+|+|.|+.|+..++..+...
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 101 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--------------------------------- 101 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 569999999999999999998 689999999999999988743321
Q ss_pred CCCCCCCCCCeeEEecccccccc-C--CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-H--PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~--~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
....++.+..+|+.+... . +++||+|++.... ++...+++.+.++|||||+++..
T Consensus 102 -----~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 102 -----GLESRIELLFGDALQLGEKLELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp -----TCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred -----CCCCcEEEEECCHHHHHHhcccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEE
Confidence 001367888999887532 2 5789999887654 36789999999999999999853
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=112.60 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+....+ +.+|||+|||+|..+..+|+. +..|+++|.|+.|+..++..+....
T Consensus 70 ll~~l~~~~~-------~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-------------- 128 (247)
T 1sui_A 70 FLSMLLKLIN-------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-------------- 128 (247)
T ss_dssp HHHHHHHHTT-------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHhhC-------cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--------------
Confidence 5555555433 469999999999999999987 6899999999999999887443210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-------CCCceeEEEecccccCcchHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-------HPNKWDCVATCFFIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-------~~~~fD~V~t~ffidta~n~~~yl~~I~~~Lk 252 (298)
+ ..++.+..||..+... .+++||+|++.. ...+...+++.+.++||
T Consensus 129 ----------------------~--~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~Lk 181 (247)
T 1sui_A 129 ----------------------V--DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVK 181 (247)
T ss_dssp ----------------------C--GGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBC
T ss_pred ----------------------C--CCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcC---chHHHHHHHHHHHHhCC
Confidence 0 1368899999877532 157899997643 24567899999999999
Q ss_pred CCeEEEE
Q psy3185 253 PGGIWIN 259 (298)
Q Consensus 253 pGG~~In 259 (298)
|||+++.
T Consensus 182 pGG~lv~ 188 (247)
T 1sui_A 182 VGGVIGY 188 (247)
T ss_dssp TTCCEEE
T ss_pred CCeEEEE
Confidence 9999984
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=115.73 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=79.0
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..||+. +..|+|+|+|+.|+..++..+...
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------------------------------- 108 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-------------------------------- 108 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT--------------------------------
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 469999999999999999984 678999999999998887643321
Q ss_pred CCCCCCCCCCCeeEEeccccccccC------CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH------PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~------~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..||+.+.... .++||+|+... ...+...|++.+.++|||||+++.
T Consensus 109 ------g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 109 ------KQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp ------TCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeEEEE
Confidence 0013788999999876432 58999987643 245678899999999999999984
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=115.58 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=92.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||||||+|.++.++|..|. .|+|+|+|+.|+..|+..+...
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-------------------------------- 264 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-------------------------------- 264 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 467999999999999999999987 8999999999999988743210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEec--cc--c---cCcchH-HHHHHHHHHhccCCeEEEEecccccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF--I---DCANNI-VSFIETIFNILKPGGIWINLGPLLYHYS 268 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff--i---dta~n~-~~yl~~I~~~LkpGG~~In~gPl~y~~~ 268 (298)
.+ ..++.+..+|+.++...+++||+|++. |. + +...++ ..+++.+.++| +|+.++.. +
T Consensus 265 ----gl--~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~-~------ 330 (373)
T 3tm4_A 265 ----GV--LDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT-T------ 330 (373)
T ss_dssp ----TC--GGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE-S------
T ss_pred ----CC--CCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE-C------
Confidence 00 136789999999987767899999985 22 1 122333 56889999988 44433321 1
Q ss_pred CCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 269 NMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 269 ~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+.+.+.+.+.+.||++.+.
T Consensus 331 ----------~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 331 ----------EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp ----------CHHHHHHHHHHTTEEEEEE
T ss_pred ----------CHHHHHHHHHHcCCEEEEE
Confidence 3788888999999998764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=109.12 Aligned_cols=96 Identities=20% Similarity=0.083 Sum_probs=74.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.+ ..|+|+|+|+.|+..++..+...
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 137 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA--------------------------------- 137 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------
Confidence 46799999999999999999986 89999999999999888743320
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ..++.+..+|+..-....+.||+|++...+.... +.+.++|||||.++.
T Consensus 138 ---~---~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi 187 (235)
T 1jg1_A 138 ---G---VKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 187 (235)
T ss_dssp ---T---CCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred ---C---CCCcEEEECCcccCCCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEE
Confidence 0 0257788898733333334699999887776554 378899999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=113.69 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=86.8
Q ss_pred CCeEEEecccCcHHHHHHHHc------CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
+.+|||+|||+|..+..||+. +..|+|+|+|+.|+..++. .
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~------------------------------ 128 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D------------------------------ 128 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G------------------------------
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c------------------------------
Confidence 469999999999999999987 6789999999999765431 0
Q ss_pred cCCCCCCCCCCCCCeeEEecccccc---cc-CCCceeEEEecccccCcchHHHHHHHHHH-hccCCeEEEEec--ccccc
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQV---YV-HPNKWDCVATCFFIDCANNIVSFIETIFN-ILKPGGIWINLG--PLLYH 266 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~---~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~-~LkpGG~~In~g--Pl~y~ 266 (298)
..++.++.||+.+. .. ...+||+|+.... + .++..+++++.+ +|||||+++... |...
T Consensus 129 -----------~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~- 193 (236)
T 2bm8_A 129 -----------MENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWY- 193 (236)
T ss_dssp -----------CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHH-
T ss_pred -----------CCceEEEECcchhHHHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeCccccc-
Confidence 03688899998874 32 2347998875433 2 367889999997 999999998532 2111
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhC--CCEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGL--GFVYE 295 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~--GF~i~ 295 (298)
..+.+++.+++++. +|++.
T Consensus 194 ----------~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 194 ----------RYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp ----------HHCHHHHHHHHHTTTTTEEEE
T ss_pred ----------ccCHHHHHHHHHhCcccEEEc
Confidence 11245888888877 68875
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-11 Score=112.20 Aligned_cols=129 Identities=14% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..||+. +..|+|+|+|+.|+..++..+.+..
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g------------------------------ 167 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG------------------------------ 167 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC------------------------------
Confidence 4679999999999999999986 3689999999999998887443210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---c---cccCcch----------------HHHHHHHHHHhccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---F---FIDCANN----------------IVSFIETIFNILKP 253 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---f---fidta~n----------------~~~yl~~I~~~Lkp 253 (298)
+ .++.++.+|+.++...+++||+|++. . .+...++ ...+++.+.++|||
T Consensus 168 ------~---~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp 238 (315)
T 1ixk_A 168 ------V---LNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP 238 (315)
T ss_dssp ------C---CSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ------C---CeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 26788899998875546789998862 1 1222121 25889999999999
Q ss_pred CeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 254 GGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 254 GG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
||+++-..- ..+. +=+.+.+..++++.||+++.
T Consensus 239 GG~lv~stc-s~~~---------~Ene~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 239 GGILVYSTC-SLEP---------EENEFVIQWALDNFDVELLP 271 (315)
T ss_dssp EEEEEEEES-CCCG---------GGTHHHHHHHHHHSSEEEEC
T ss_pred CCEEEEEeC-CCCh---------HHhHHHHHHHHhcCCCEEec
Confidence 999973211 0111 11245677888889988763
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=111.52 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=94.1
Q ss_pred CeEEEecccC--cHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 121 VNILVPGAGL--GRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.+|||+|||+ |....+++++ +..|+++|.|+.||..++..+..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~-------------------------------- 127 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS-------------------------------- 127 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC--------------------------------
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc--------------------------------
Confidence 5899999998 5566777764 67899999999999988875421
Q ss_pred CCCCCCCCCCCCeeEEecccccccc----C--CCcee-----EEEecccccCcch---HHHHHHHHHHhccCCeEEEEe-
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV----H--PNKWD-----CVATCFFIDCANN---IVSFIETIFNILKPGGIWINL- 260 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~----~--~~~fD-----~V~t~ffidta~n---~~~yl~~I~~~LkpGG~~In~- 260 (298)
.+ ..++.++.+|+.+... . .+.|| +|+++..|++.++ ...+++++++.|+|||+++..
T Consensus 128 ------~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 128 ------TP-EGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp ------CS-SSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred ------CC-CCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 01 1468899999987521 1 35566 5777777776665 678999999999999999742
Q ss_pred -c-cc----------cccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 261 -G-PL----------LYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 261 -g-Pl----------~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
. +. .|... +.+....|.+|+.+++. ||+++
T Consensus 201 ~~~d~~p~~~~~~~~~~~~~---g~p~~~rs~~ei~~~f~--Glelv 242 (277)
T 3giw_A 201 GTAEFAPQEVGRVAREYAAR---NMPMRLRTHAEAEEFFE--GLELV 242 (277)
T ss_dssp ECCTTSHHHHHHHHHHHHHT---TCCCCCCCHHHHHHTTT--TSEEC
T ss_pred ccCCCCHHHHHHHHHHHHhc---CCCCccCCHHHHHHHhC--CCccc
Confidence 1 11 01111 12445579999999994 99975
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=109.41 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+.+ ..|+|+|+|+.|+..++..+......+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------- 100 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNT---------------------------- 100 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhcc----------------------------
Confidence 46799999999999999999986 479999999999998876433211000
Q ss_pred CCCCCCCCCCCeeEEeccccc-cc--cCCCceeEEEecccccCcc-h--------HHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-VY--VHPNKWDCVATCFFIDCAN-N--------IVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-~~--~~~~~fD~V~t~ffidta~-n--------~~~yl~~I~~~LkpGG~~In~ 260 (298)
.. .....++.++.+|+.+ +. .+.+++|.|+.+| -+... . ...+++.+.++|||||+++..
T Consensus 101 --~~-~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~-p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 101 --AS-KHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCF-PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp ---C-CSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEES-CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred --cc-ccCCCcEEEEeccHHHHHHHhccccccCEEEEEC-CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 00 0001368889999876 32 3568999888654 12110 0 047999999999999998854
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-12 Score=111.95 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=78.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+++ ..|+|+|+|+.|+..++....... .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~------------------------------~ 85 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD------------------------------N 85 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG------------------------------G
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh------------------------------h
Confidence 46799999999999999999985 689999999999999876221000 0
Q ss_pred CCCCCCCCCCCeeEEeccccccc-------cCCCceeEEEec--cccc----------------CcchHHHHHHHHHHhc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY-------VHPNKWDCVATC--FFID----------------CANNIVSFIETIFNIL 251 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~-------~~~~~fD~V~t~--ffid----------------ta~n~~~yl~~I~~~L 251 (298)
..+ ..++.+..+|+.++. ..+++||+|++. |+.. ....+..+++.+.++|
T Consensus 86 ---~~l--~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L 160 (260)
T 2ozv_A 86 ---AAF--SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM 160 (260)
T ss_dssp ---TTT--GGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE
T ss_pred ---CCC--cceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc
Confidence 000 125888999998872 246799999986 4332 1123678999999999
Q ss_pred cCCeEEEEe
Q psy3185 252 KPGGIWINL 260 (298)
Q Consensus 252 kpGG~~In~ 260 (298)
||||.++.+
T Consensus 161 kpgG~l~~~ 169 (260)
T 2ozv_A 161 VSGGQLSLI 169 (260)
T ss_dssp EEEEEEEEE
T ss_pred CCCCEEEEE
Confidence 999998754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=108.29 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=83.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+....+ +.+|||+|||+|..+..+|+. +..|+++|.|+.|+..++..+.+..
T Consensus 61 ~l~~l~~~~~-------~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-------------- 119 (237)
T 3c3y_A 61 LMSFVLKLVN-------AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-------------- 119 (237)
T ss_dssp HHHHHHHHTT-------CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHhhC-------CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--------------
Confidence 5566555443 469999999999999999986 6799999999999999887443210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-------CCCceeEEEecccccCcchHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-------HPNKWDCVATCFFIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-------~~~~fD~V~t~ffidta~n~~~yl~~I~~~Lk 252 (298)
+ ..++.+..||..+... ..++||+|+... ...+...|++.+.++||
T Consensus 120 ----------------------~--~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~ 172 (237)
T 3c3y_A 120 ----------------------V--EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVK 172 (237)
T ss_dssp ----------------------C--GGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEE
T ss_pred ----------------------C--CCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcC
Confidence 0 1368889999877532 157899997542 34567899999999999
Q ss_pred CCeEEEE
Q psy3185 253 PGGIWIN 259 (298)
Q Consensus 253 pGG~~In 259 (298)
|||+++.
T Consensus 173 pGG~lv~ 179 (237)
T 3c3y_A 173 VGGIVAY 179 (237)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999884
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=107.27 Aligned_cols=101 Identities=21% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++. | ..|+|+|+|+.|+..++..+.... .. .
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~----------------------~- 129 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD----PT----------------------L- 129 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC----TH----------------------H-
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc----cc----------------------c-
Confidence 4679999999999999999987 4 589999999999998876432200 00 0
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.......++||+|++...+... ++.+.++|||||+++.
T Consensus 130 -------~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 130 -------LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLIL 180 (226)
T ss_dssp -------HHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEE
T ss_pred -------cCCCcEEEEECCcccCcccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEE
Confidence 00136788899987765556789999877665433 4688999999999874
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=106.72 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..+|+. +..|+++|.|+.|+..++..+....
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------------------------------- 118 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE------------------------------- 118 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-------------------------------
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-------------------------------
Confidence 569999999999999999986 5789999999999999887443210
Q ss_pred CCCCCCCCCCCeeEEeccccccccC---C---CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH---P---NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~---~---~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+ ..++.+..+|+.+.... . ++||+|++... ..+...+++.+.++|||||+++...
T Consensus 119 -----~--~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 119 -----A--EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp -----C--TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred -----C--CCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 0 13688899998765321 1 78999987432 4556789999999999999998544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=108.13 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-------CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTM 190 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r 190 (298)
++.+|||+|||+|.++..+++. | ..|+|+|+|+.|+..++..+..... .
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~------------------- 140 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR----S------------------- 140 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH----H-------------------
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCc----c-------------------
Confidence 4679999999999999999985 5 3899999999999998874432100 0
Q ss_pred ccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 191 AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 191 ~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
... ..++.+..+|..+.....++||+|++...++.. .+.+.++|||||+++.
T Consensus 141 ~~~-----------~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 141 MLD-----------SGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDT------PTELINQLASGGRLIV 192 (227)
T ss_dssp HHH-----------HTSEEEEESCGGGCCGGGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEE
T ss_pred ccC-----------CCceEEEECCcccCCCcCCCccEEEECCchHHH------HHHHHHHhcCCCEEEE
Confidence 000 026778889987744344789999888776654 3788999999999863
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=113.82 Aligned_cols=140 Identities=10% Similarity=0.016 Sum_probs=86.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..++++ +..|+|+|+|+.|+..|+..+...
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 112 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-------------------------------- 112 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 3579999999999999999987 689999999999999988743210
Q ss_pred CCCCCCCCCCCeeEEecccccc---ccC---CCceeEEEec--ccccC-----c--c------hHHHHHHHHHHhccCCe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQV---YVH---PNKWDCVATC--FFIDC-----A--N------NIVSFIETIFNILKPGG 255 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~---~~~---~~~fD~V~t~--ffidt-----a--~------n~~~yl~~I~~~LkpGG 255 (298)
.+ ..++.+..+|..+. +.. +++||+|++. |+-.. . . .....+..++++|||||
T Consensus 113 ----~~--~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG 186 (254)
T 2h00_A 113 ----NL--SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGG 186 (254)
T ss_dssp ----TC--TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHT
T ss_pred ----CC--CccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCC
Confidence 00 12578888886552 122 2689999987 32111 0 1 11245678899999999
Q ss_pred EEEEecccc---ccc-cCCC---CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 256 IWINLGPLL---YHY-SNML---NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 256 ~~In~gPl~---y~~-~~~~---~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+..+.++. +.. .... .......+.+++.+++++.||+.+.
T Consensus 187 ~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~ 234 (254)
T 2h00_A 187 ELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVT 234 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEE
T ss_pred EEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceE
Confidence 764322110 000 0000 0011223458999999999997653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=108.73 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=77.5
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..+|+. +..|+|+|.|+.|+..++..+....
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------------------------------- 109 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG------------------------------- 109 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-------------------------------
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------------------------------
Confidence 569999999999999999987 5789999999999999887543210
Q ss_pred CCCCCCCCCCCeeEEecccccccc---------------C-C-CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV---------------H-P-NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~---------------~-~-~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|+.+... + + ++||+|++.+ ..++...+++.+.++|||||+++.
T Consensus 110 -------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv~ 179 (239)
T 2hnk_A 110 -------LENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLIA 179 (239)
T ss_dssp -------CGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 01247778888765321 1 2 7899998764 345677999999999999999985
Q ss_pred e
Q psy3185 260 L 260 (298)
Q Consensus 260 ~ 260 (298)
.
T Consensus 180 ~ 180 (239)
T 2hnk_A 180 D 180 (239)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=107.16 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=77.3
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+|||+|..+..+|+. +..|+++|.|+.|+..++..+....
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g------------------------------- 121 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG------------------------------- 121 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-------------------------------
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------------------------------
Confidence 469999999999999999986 5789999999999999887443210
Q ss_pred CCCCCCCCCCCeeEEecccccccc----CC--CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV----HP--NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~----~~--~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
+ ..++.+..+|+.+... .+ ++||+|++.. ...+...+++.+.++|||||+++..
T Consensus 122 -----~--~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 122 -----V--AEKISLRLGPALATLEQLTQGKPLPEFDLIFIDA---DKRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp -----C--GGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECS---CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----C--CCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECC---CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 0 1257788888765421 12 7899997543 2467789999999999999999853
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=116.00 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=94.7
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..+++++ ..++++|+ +.|+..++.
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------------------------- 234 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-------------------------------------- 234 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC--------------------------------------
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc--------------------------------------
Confidence 5699999999999999999984 57999999 577642210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH--HHHHHHHHhccC---CeEEEEeccccccccCC--
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV--SFIETIFNILKP---GGIWINLGPLLYHYSNM-- 270 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~--~yl~~I~~~Lkp---GG~~In~gPl~y~~~~~-- 270 (298)
. .++.+..+||.+ ..+ .||+|++.+.++...+.. ..+++++++||| ||.++...+..-.....
T Consensus 235 ----~---~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~ 304 (358)
T 1zg3_A 235 ----N---ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304 (358)
T ss_dssp ----C---SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHH
T ss_pred ----C---CCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccch
Confidence 0 258899999987 332 499999999998777644 999999999999 99887544321100000
Q ss_pred -------------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 -------------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 -------------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
......+.+.+|+.++++++||++++
T Consensus 305 ~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 343 (358)
T 1zg3_A 305 LTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYK 343 (358)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEE
T ss_pred hhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeE
Confidence 00013456999999999999999875
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=120.68 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+.|. .|+|+|.|. |+..|+......
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~--------------------------------- 203 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------------------------------- 203 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHc---------------------------------
Confidence 467999999999999999999875 799999999 998887643210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.+..+|+.++.. +++||+|++...+. ..++....+..+.++|||||+++
T Consensus 204 ---gl--~~~v~~~~~d~~~~~~-~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 204 ---NL--TDRIVVIPGKVEEVSL-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp ---TC--TTTEEEEESCTTTCCC-SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred ---CC--CCcEEEEECchhhCcc-CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 01 1378899999988643 46899999864322 33566778889999999999997
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-11 Score=100.71 Aligned_cols=120 Identities=16% Similarity=0.049 Sum_probs=87.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++.....
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~---------------------------------- 94 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE---------------------------------- 94 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG----------------------------------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 467999999999999999999987 599999999999988763211
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc--cccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF--FIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f--fidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
. ..++.+..+|+.++. ++||+|++.. +.........+++.+.++| ||+++..-+ .
T Consensus 95 -----~-~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~----~-------- 151 (207)
T 1wy7_A 95 -----F-KGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLA----K-------- 151 (207)
T ss_dssp -----G-TTSEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEEC----C--------
T ss_pred -----c-CCCEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeC----C--------
Confidence 0 015778999998863 5899999863 3323234567899999998 776653300 0
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.-+.+.+.+.+.+.||++..
T Consensus 152 -~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 152 -PEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp -HHHHHHHHHHHHHTTEEEEE
T ss_pred -cCCHHHHHHHHHHCCCeEEE
Confidence 01256678888899998753
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-11 Score=111.81 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=79.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++.++++. +.+|+++|+|+.|+..|+..+..... .
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~-----------------------------g 170 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-----------------------------G 170 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----------------------------G
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc-----------------------------c
Confidence 3579999999999999999988 46899999999999998863221000 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEeccc--ccCcch--HHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFF--IDCANN--IVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ff--idta~n--~~~yl~~I~~~LkpGG~~In~ 260 (298)
+ ...++.++.+|+.++.. .+++||+|++..+ ...... ..++++.++++|||||+++..
T Consensus 171 l------~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 171 Y------EDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp G------GSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred c------CCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 0 01378899999877532 3578999997543 222222 368999999999999999853
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-11 Score=111.63 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=79.0
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++.++++. +.+|+++|+|+.|+..++..+..... .
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-----------------------------~- 127 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-----------------------------G- 127 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-----------------------------T-
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-----------------------------c-
Confidence 579999999999999999988 46899999999999998863221000 0
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccC---c--ch--HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDC---A--NN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidt---a--~n--~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.++.+|..++. ..+++||+|++..+.+. . .. ..++++.++++|||||+++.
T Consensus 128 ---~~-~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 193 (314)
T 1uir_A 128 ---AF-DDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (314)
T ss_dssp ---GG-GCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred ---cc-cCCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEE
Confidence 00 0137889999988753 24689999988765433 1 12 36899999999999999873
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=102.87 Aligned_cols=33 Identities=24% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~ 151 (298)
++.+|||+|||+|.++..++++ +..|+|+|+|+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 4579999999999999999987 36899999998
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=111.76 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=76.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++. | ..|+|+|+|+.|+..|+..+..... .+ .+.
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~----------------------~ln 160 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD--SW----------------------KLS 160 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH--HH----------------------TTT
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhc--cc----------------------ccc
Confidence 4679999999999999999997 5 7899999999999998874332100 00 000
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+. ....++.+..+|+.+.. .++++||+|++.. .+...+++.+.++|||||.++...|
T Consensus 161 ~~~----~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 161 HVE----EWPDNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp CSS----CCCCCEEEEESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred ccc----ccCCceEEEECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 000 00137889999998763 2457899998743 2233479999999999999986544
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=115.96 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=83.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEeccc------CcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAG------LGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNV 169 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG------~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~ 169 (298)
.|.++.+.+.+.+.. ++.+|||+||| +|..+..+++. +..|+|+|+|+.|.. .
T Consensus 201 ~y~~~Ye~lL~~l~~-----~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-------~------ 262 (419)
T 3sso_A 201 WFTPHYDRHFRDYRN-----QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-------D------ 262 (419)
T ss_dssp BCHHHHHHHHGGGTT-----SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-------C------
T ss_pred hHHHHHHHHHHhhcC-----CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-------c------
Confidence 455666666554432 46799999999 88888888865 578999999999820 0
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC------CCceeEEEecccccCcchHHHH
Q psy3185 170 YKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH------PNKWDCVATCFFIDCANNIVSF 243 (298)
Q Consensus 170 ~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~------~~~fD~V~t~ffidta~n~~~y 243 (298)
..++.+..||+.++... +++||+|++.. .+...+...+
T Consensus 263 -----------------------------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~a 306 (419)
T 3sso_A 263 -----------------------------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTS 306 (419)
T ss_dssp -----------------------------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHH
T ss_pred -----------------------------------CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHH
Confidence 03788999999887554 58999998753 4556788899
Q ss_pred HHHHHHhccCCeEEEEe
Q psy3185 244 IETIFNILKPGGIWINL 260 (298)
Q Consensus 244 l~~I~~~LkpGG~~In~ 260 (298)
|++++++|||||++|..
T Consensus 307 L~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 307 FAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhcCCCeEEEEE
Confidence 99999999999999854
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=108.87 Aligned_cols=100 Identities=14% Similarity=0.230 Sum_probs=75.7
Q ss_pred CCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++......
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~---------------------------------- 169 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH---------------------------------- 169 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 469999999999999999998 789999999999999988733210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCce---eEEEecc-ccc------------------CcchHHHHHHHHH-HhccCCe
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKW---DCVATCF-FID------------------CANNIVSFIETIF-NILKPGG 255 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~f---D~V~t~f-fid------------------ta~n~~~yl~~I~-~~LkpGG 255 (298)
.+ ..++.+..+|+.+.. .++| |+|++.- ++. ...+-..+++.|. +.|||||
T Consensus 170 --~l--~~~v~~~~~D~~~~~--~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG 243 (284)
T 1nv8_A 170 --GV--SDRFFVRKGEFLEPF--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGK 243 (284)
T ss_dssp --TC--TTSEEEEESSTTGGG--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTC
T ss_pred --CC--CCceEEEECcchhhc--ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCC
Confidence 00 125889999998753 2589 9999861 111 1112237899999 9999999
Q ss_pred EEEE
Q psy3185 256 IWIN 259 (298)
Q Consensus 256 ~~In 259 (298)
.++.
T Consensus 244 ~l~~ 247 (284)
T 1nv8_A 244 IVLM 247 (284)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=112.44 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=77.5
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++.++++. +.+|+++|+|+.|+..++..+.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~----------------------------------- 134 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD----------------------------------- 134 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC-----------------------------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc-----------------------------------
Confidence 459999999999999999983 6789999999999999886211
Q ss_pred CCCCCCCCCCeeEEecccccccc--CCCceeEEEeccccc--CcchH--HHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFID--CANNI--VSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffid--ta~n~--~~yl~~I~~~LkpGG~~I 258 (298)
++...++.++.+|..++.. .+++||+|++-.+-. ....+ .++++.++++|||||+++
T Consensus 135 ----~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv 197 (317)
T 3gjy_A 135 ----IPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYV 197 (317)
T ss_dssp ----CCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEE
T ss_pred ----ccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEE
Confidence 0112478999999887643 357999998754432 12222 689999999999999986
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=110.78 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++.++++.|. +|+++|+|+.|+..|+..+ .... . ++...
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~--~------------------------l~~~~ 128 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDN--G------------------------LLEAM 128 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTT--T------------------------HHHHH
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhcc--c------------------------ccccc
Confidence 57999999999999999999864 7999999999999988632 1000 0 00000
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.. ....++.++.+|..++...+++||+|++..+.. ....+ .++++.++++|||||+++.
T Consensus 129 ~~--~~~~~v~~~~~D~~~~l~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~ 191 (281)
T 1mjf_A 129 LN--GKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 191 (281)
T ss_dssp HT--TCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred cc--CCCCcEEEEECchHHHhcccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 00 011478899999876532267899998754321 11222 6899999999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=109.51 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=90.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+| |+|.++..+++.|. .|+|+|+|+.|+..++......
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-------------------------------- 218 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-------------------------------- 218 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 467999999 99999999999875 7999999999999988733210
Q ss_pred CCCCCCCCCCCeeEEeccccc-ccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-VYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNED 274 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~ 274 (298)
.+ .++.++.||+.+ ++. .+++||+|++.-..... ....+++.+.++|||||.++.+ ...
T Consensus 219 ----g~---~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~-----~~~------ 279 (373)
T 2qm3_A 219 ----GY---EDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYF-----GIT------ 279 (373)
T ss_dssp ----TC---CCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEE-----EEC------
T ss_pred ----CC---CCEEEEEChhhhhchhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEE-----EEe------
Confidence 00 268899999988 442 24689999886322212 3588999999999999943211 111
Q ss_pred ccCCCH---HHHHHHHH-hCCCEEEE
Q psy3185 275 SIEPSY---EVVKQVIQ-GLGFVYEV 296 (298)
Q Consensus 275 ~~~ls~---eEl~~~~~-~~GF~i~~ 296 (298)
...-+. +++.+.+. ..||.+..
T Consensus 280 ~~~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 280 RRESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp TTTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred cCcCCHHHHHHHHHHHHHhcCcchhh
Confidence 012234 78888888 89998753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=108.52 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++.++++.+ .+|+++|+|+.|+..++..+..
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~--------------------------------- 124 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN--------------------------------- 124 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT---------------------------------
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH---------------------------------
Confidence 35799999999999999999883 6899999999999998863211
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEeccccc--CcchH--HHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFID--CANNI--VSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffid--ta~n~--~~yl~~I~~~LkpGG~~In~ 260 (298)
... .+ ...++.++.+|..++.. .+++||+|++..+.. ....+ .++++.++++|||||+++..
T Consensus 125 ~~~-~~-~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 125 ISC-GY-EDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp TSG-GG-GSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred hcc-cc-CCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 000 00 01478899999877532 368999998754322 23333 58999999999999999853
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=104.79 Aligned_cols=128 Identities=18% Similarity=0.075 Sum_probs=88.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc--C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|+. | ..|+|+|.|+.|+..++..+.+.
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~------------------------------- 131 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------------------------------- 131 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh-------------------------------
Confidence 4679999999999999999984 5 68999999999999887643320
Q ss_pred CCCCCCCCCCCCeeEEecccccccc----CCCceeEEEec---cc---cc------------CcchHHHHHHHHHHhccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC---FF---ID------------CANNIVSFIETIFNILKP 253 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~---ff---id------------ta~n~~~yl~~I~~~Lkp 253 (298)
.+ .++.+..+|+.++.. ..++||+|++. .. +. ........++.+.++|||
T Consensus 132 -----g~---~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp 203 (274)
T 3ajd_A 132 -----GV---LNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK 203 (274)
T ss_dssp -----TC---CSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE
T ss_pred -----CC---CcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00 267889999987754 26789998764 11 11 113457899999999999
Q ss_pred CeEEEEeccccccccCCCCCCccCCCHHHHHHHHHh-CCCEEE
Q psy3185 254 GGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQG-LGFVYE 295 (298)
Q Consensus 254 GG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~-~GF~i~ 295 (298)
||.++-...-. .-+=+.+.+..++++ .+|+++
T Consensus 204 gG~lv~stcs~----------~~~ene~~v~~~l~~~~~~~~~ 236 (274)
T 3ajd_A 204 DGELVYSTCSM----------EVEENEEVIKYILQKRNDVELI 236 (274)
T ss_dssp EEEEEEEESCC----------CTTSSHHHHHHHHHHCSSEEEE
T ss_pred CCEEEEEECCC----------ChHHhHHHHHHHHHhCCCcEEe
Confidence 99987422111 111125566666654 467765
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=108.38 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+.+. .|+|+|+|+.|+..++.-... +
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~----n---------------------------- 166 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL----N---------------------------- 166 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH----T----------------------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------------
Confidence 467999999999999999999854 899999999999988763221 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.+..||+.++ ...++||+|++... .+..+++..+.++|||||+++.
T Consensus 167 ----~l---~~~~~~~~d~~~~-~~~~~~D~Vi~d~p----~~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 167 ----KL---NNVIPILADNRDV-ELKDVADRVIMGYV----HKTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp ----TC---SSEEEEESCGGGC-CCTTCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred ----CC---CCEEEEECChHHc-CccCCceEEEECCc----ccHHHHHHHHHHHcCCCCEEEE
Confidence 00 2677999999887 44678999986543 2566789999999999998873
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=106.37 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+..+. .++.+|||+|||+|.++..|++.|..|+|+|+|+.|+..++......
T Consensus 16 i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 73 (285)
T 1zq9_A 16 IINSIIDKAAL----RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT------------------ 73 (285)
T ss_dssp HHHHHHHHTCC----CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTS------------------
T ss_pred HHHHHHHhcCC----CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 66666666653 24679999999999999999999999999999999999887632110
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH-HHH--------------HHH
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV-SFI--------------ETI 247 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~-~yl--------------~~I 247 (298)
+...++.++.+|+.++.. .+||+|++..-.+....+. ..+ +++
T Consensus 74 --------------------~~~~~v~~~~~D~~~~~~--~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEv 131 (285)
T 1zq9_A 74 --------------------PVASKLQVLVGDVLKTDL--PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREF 131 (285)
T ss_dssp --------------------TTGGGEEEEESCTTTSCC--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHH
T ss_pred --------------------CCCCceEEEEcceecccc--hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHH
Confidence 001368899999988743 3799998865444333222 333 223
Q ss_pred --HHhccCCeEE
Q psy3185 248 --FNILKPGGIW 257 (298)
Q Consensus 248 --~~~LkpGG~~ 257 (298)
.++|||||.+
T Consensus 132 a~r~vlkPGg~~ 143 (285)
T 1zq9_A 132 ALRLVAKPGDKL 143 (285)
T ss_dssp HHHHHCCTTCTT
T ss_pred HHHHhcCCCCcc
Confidence 3689999965
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=108.04 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++.++++++ .+|+++|+|+.|+..++..+..... .
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-----------------------------~ 145 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-----------------------------G 145 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----------------------------G
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhc-----------------------------c
Confidence 35799999999999999999984 6899999999999998863221000 0
Q ss_pred CCCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccC--cc--hHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDC--AN--NIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidt--a~--n~~~yl~~I~~~LkpGG~~In 259 (298)
+ ...++.++.+|..++. ..+++||+|++..+... .. ...++++.++++|||||+++.
T Consensus 146 -----~-~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 207 (304)
T 2o07_A 146 -----Y-SSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 207 (304)
T ss_dssp -----G-GCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred -----c-CCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence 0 0137889999987743 23579999987543211 11 124789999999999999984
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=110.73 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=77.9
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++.++++. +.+|+++|+|+.|+..++..+.....
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~------------------------------- 165 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC------------------------------- 165 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG-------------------------------
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc-------------------------------
Confidence 579999999999999999988 46899999999999998863211000
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccc--cCcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFI--DCANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffi--dta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.+..+|+.+.. ..+++||+|++..+- .....+ .++++.+.++|||||+++.
T Consensus 166 ---~~-~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 228 (321)
T 2pt6_A 166 ---GY-EDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 228 (321)
T ss_dssp ---GG-GSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ---cc-CCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 00 0137889999987753 235789999875431 112233 6899999999999999985
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-11 Score=107.33 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++.++++. | .+|+++|+|+.|+..++.-+.....
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~------------------------------- 124 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG------------------------------- 124 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT-------------------------------
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcc-------------------------------
Confidence 579999999999999999988 5 5799999999999998863211000
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcc--h--HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCAN--N--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~--n--~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.++.+|..++. ..+++||+|++..+-...+ . ..++++.++++|||||+++.
T Consensus 125 ---~~-~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 125 ---KL-DDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp ---TT-TSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred ---cc-CCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 00 1147899999987753 2357999998754322111 1 25799999999999999974
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=107.37 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=75.7
Q ss_pred CCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++.++++. + .+|+++|+|+.|+..++..+..... .+
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~-----------------------------~~ 141 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC-----------------------------GF 141 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG-----------------------------GG
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-----------------------------cc
Confidence 579999999999999999998 3 5899999999999998863211000 00
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEeccccc---Ccc--hHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFID---CAN--NIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffid---ta~--n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.++.+|+.++. ..+++||+|++..+-. ... ...++++.+.++|||||+++.
T Consensus 142 ------~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 142 ------DDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp ------GCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0137889999987743 2357899998743211 111 126899999999999999974
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=101.11 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=68.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+|+++..|+|+|+|+.+ .
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~----------------------------------- 60 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------E----------------------------------- 60 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------C-----------------------------------
T ss_pred CCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------c-----------------------------------
Confidence 46899999999999999999999999999999631 0
Q ss_pred CCCCCCCCCeeEEecccccccc--------C---CCceeEEEecccccC-----------cchHHHHHHHHHHhccCCeE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV--------H---PNKWDCVATCFFIDC-----------ANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~--------~---~~~fD~V~t~ffidt-----------a~n~~~yl~~I~~~LkpGG~ 256 (298)
..++.+..||+++... . .++||+|++....++ .......++.+.++|||||.
T Consensus 61 ------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~ 134 (191)
T 3dou_A 61 ------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGN 134 (191)
T ss_dssp ------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCE
Confidence 0267788999877531 1 149999998542221 11234678889999999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
++.
T Consensus 135 lv~ 137 (191)
T 3dou_A 135 VLL 137 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=98.22 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=81.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++...
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~------------------------------------ 94 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------------------------------------ 94 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------------------------------------
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhc------------------------------------
Confidence 467999999999999999999987 5999999999999887510
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.++.+..+|+.++. ++||+|++..-+++.. ....+++.+.++| |++++...|-
T Consensus 95 --------~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~------------ 149 (200)
T 1ne2_A 95 --------GGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNAK------------ 149 (200)
T ss_dssp --------TTSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEGG------------
T ss_pred --------CCCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcCc------------
Confidence 14668889988863 7899999874433332 2347899999998 6666543320
Q ss_pred cCCCHHHHHHHHHhCCCEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~ 295 (298)
+.+.+.+++...| ++.
T Consensus 150 ---~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 150 ---ARDFLRREFSARG-DVF 165 (200)
T ss_dssp ---GHHHHHHHHHHHE-EEE
T ss_pred ---hHHHHHHHHHHCC-CEE
Confidence 1456777777777 543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-12 Score=113.53 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=70.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+|++ ..|+|+|+|+ |+..++. . | .+.
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~---~----------~-------------------~~~-- 125 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHE---K----------P-------------------RLV-- 125 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSC---C----------C-------------------CCC--
T ss_pred CCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhh---c----------h-------------------hhh--
Confidence 4679999999999999999999 6899999998 7432110 0 0 000
Q ss_pred CCCCCCCCCeeEE--eccccccccCCCceeEEEecccccCcch-------HHHHHHHHHHhccCCe--EEEE
Q psy3185 199 TSDYNDDCDFSMA--AGDFLQVYVHPNKWDCVATCFFIDCANN-------IVSFIETIFNILKPGG--IWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~--~gDf~~~~~~~~~fD~V~t~ffidta~n-------~~~yl~~I~~~LkpGG--~~In 259 (298)
. ....++.+. .+|+.+++ +++||+|++.+. ....+ ....++.+.++||||| .++.
T Consensus 126 -~--~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 126 -E--TFGWNLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp -C--CTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred -h--hcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 0 001267788 99998874 679999998754 32211 1137899999999999 8874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-11 Score=106.52 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=74.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++.++++.+.+|+++|+|+.|+..|+..+..... .+
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~--------------------------~~----- 121 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHE--------------------------VK----- 121 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHH--------------------------HH-----
T ss_pred CCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhcc--------------------------cc-----
Confidence 56999999999999999998886799999999999877642110000 00
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|..++. ++||+|++.. .+...+++.+.++|||||+++.
T Consensus 122 ----~~~rv~~~~~D~~~~~---~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 122 ----NNKNFTHAKQLLDLDI---KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp ----TCTTEEEESSGGGSCC---CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEE
T ss_pred ----CCCeEEEEechHHHHH---hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEE
Confidence 0137888999988764 7899998752 2334599999999999999985
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-11 Score=108.78 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=74.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++.++++. +..|+++|+|+.|+..|+..+.. .
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~---------------------------------~ 155 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG---------------------------------M 155 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT---------------------------------T
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH---------------------------------h
Confidence 569999999999999999987 36899999999999998863211 0
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEeccccc--CcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFID--CANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffid--ta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.. .+ ...++.++.+|+.+.. ..+++||+|++..+-. ....+ .++++.+.++|||||+++.
T Consensus 156 ~~-~~-~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~ 220 (314)
T 2b2c_A 156 SC-GF-SHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 220 (314)
T ss_dssp SG-GG-GCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred cc-cc-CCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence 00 00 0147889999987753 2467999998754321 12223 5899999999999999974
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=110.19 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|. .|+|+|.|+.|+..|+.-... +
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~----n------------------------------ 258 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA----N------------------------------ 258 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH----T------------------------------
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 56999999999999999999887 799999999999988763211 0
Q ss_pred CCCCCCCCCeeEEecccccccc----CCCceeEEEec--cc-------ccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FF-------IDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ff-------idta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+. ..++.+..+|+.++.. ..++||+|++. +| .+......+.++.+.++|||||+++.
T Consensus 259 --~~~-~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~ 329 (385)
T 2b78_A 259 --HLD-MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA 329 (385)
T ss_dssp --TCC-CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred --CCC-ccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 0168899999877532 24589999873 21 12233455677888999999999874
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=102.34 Aligned_cols=120 Identities=14% Similarity=0.063 Sum_probs=91.0
Q ss_pred hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccc
Q psy3185 93 SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKI 172 (298)
Q Consensus 93 ~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i 172 (298)
-.||-++|+++...+.+. + .+.+|||+|||+|-|+..++ -+..++|.|+|..|+..++..+...
T Consensus 86 TrerLp~ld~fY~~i~~~-~------~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~-------- 149 (253)
T 3frh_A 86 TKERLAELDTLYDFIFSA-E------TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREK-------- 149 (253)
T ss_dssp HHHHGGGHHHHHHHHTSS-C------CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHT--------
T ss_pred HHHHhhhHHHHHHHHhcC-C------CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhc--------
Confidence 357888888888877765 3 35799999999999999988 6678999999999999998854320
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH-HHHHHHHHhc
Q psy3185 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV-SFIETIFNIL 251 (298)
Q Consensus 173 ~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~-~yl~~I~~~L 251 (298)
..++.+..+|+....+ +++||+|+..-.++..++.. ...-.+.+.|
T Consensus 150 --------------------------------g~~~~~~v~D~~~~~~-~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL 196 (253)
T 3frh_A 150 --------------------------------DWDFTFALQDVLCAPP-AEAGDLALIFKLLPLLEREQAGSAMALLQSL 196 (253)
T ss_dssp --------------------------------TCEEEEEECCTTTSCC-CCBCSEEEEESCHHHHHHHSTTHHHHHHHHC
T ss_pred --------------------------------CCCceEEEeecccCCC-CCCcchHHHHHHHHHhhhhchhhHHHHHHHh
Confidence 1367788889877753 56999998875444443321 2344778899
Q ss_pred cCCeEEEEec
Q psy3185 252 KPGGIWINLG 261 (298)
Q Consensus 252 kpGG~~In~g 261 (298)
+|+|++|++.
T Consensus 197 ~~~~vvVsfP 206 (253)
T 3frh_A 197 NTPRMAVSFP 206 (253)
T ss_dssp BCSEEEEEEE
T ss_pred cCCCEEEEcC
Confidence 9999999863
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-11 Score=111.21 Aligned_cols=99 Identities=9% Similarity=0.007 Sum_probs=70.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++++ ..|+|+|+|+ |+..++. . | ++. .
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~------~-------~-------------------~~~-~ 118 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHE------V-------P-------------------RIT-E 118 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCC------C-------C-------------------CCC-C
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhh------h-------h-------------------hhh-h
Confidence 4679999999999999999999 7899999998 7422110 0 0 000 0
Q ss_pred CCCCCCCCCeeEE--eccccccccCCCceeEEEecccccCcch-------HHHHHHHHHHhccCCe--EEEE
Q psy3185 199 TSDYNDDCDFSMA--AGDFLQVYVHPNKWDCVATCFFIDCANN-------IVSFIETIFNILKPGG--IWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~--~gDf~~~~~~~~~fD~V~t~ffidta~n-------~~~yl~~I~~~LkpGG--~~In 259 (298)
....++.+. .+|+.++. +++||+|++.+. +...+ ....++.+.++||||| .++.
T Consensus 119 ----~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 119 ----SYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ----BTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ----ccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 001267788 89998874 679999998754 32211 1237899999999999 8874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=102.84 Aligned_cols=144 Identities=19% Similarity=0.126 Sum_probs=100.6
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCRE 166 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~ 166 (298)
|+..-..||. .+.+.+. ++.+|||+|||+|.++..+|++|. .|+|+|+|+.++..++.-...
T Consensus 108 f~~~~~~er~--------ri~~~~~------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~--- 170 (278)
T 3k6r_A 108 FSPANVKERV--------RMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL--- 170 (278)
T ss_dssp CCGGGHHHHH--------HHHHHCC------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHH---
T ss_pred EcCCcHHHHH--------HHHHhcC------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH---
Confidence 7776667775 2333443 367999999999999999999985 799999999999887762211
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHH
Q psy3185 167 KNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIET 246 (298)
Q Consensus 167 ~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~ 246 (298)
| .+ ...+.+..+|..++. ..+.||.|+... .+.-.++++.
T Consensus 171 -N--------------------------------~v--~~~v~~~~~D~~~~~-~~~~~D~Vi~~~----p~~~~~~l~~ 210 (278)
T 3k6r_A 171 -N--------------------------------KV--EDRMSAYNMDNRDFP-GENIADRILMGY----VVRTHEFIPK 210 (278)
T ss_dssp -T--------------------------------TC--TTTEEEECSCTTTCC-CCSCEEEEEECC----CSSGGGGHHH
T ss_pred -c--------------------------------CC--CCcEEEEeCcHHHhc-cccCCCEEEECC----CCcHHHHHHH
Confidence 0 01 136788999988875 468999887543 2233467888
Q ss_pred HHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 247 IFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 247 I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..++|||||++.. |.+... .....-..+.+.++++..|+++.
T Consensus 211 a~~~lk~gG~ih~-----~~~~~e--~~~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 211 ALSIAKDGAIIHY-----HNTVPE--KLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp HHHHEEEEEEEEE-----EEEEEG--GGTTTTTHHHHHHHHHHTTCEEE
T ss_pred HHHHcCCCCEEEE-----Eeeecc--cccchhHHHHHHHHHHHcCCcEE
Confidence 8899999996541 222210 01122346888999999999875
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=108.78 Aligned_cols=129 Identities=17% Similarity=0.238 Sum_probs=93.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.+.+.+.+.+.. .++.+|||||||+|.++..++++ +..++|+|+++.|+..|
T Consensus 26 ~l~~~~~~~~~~----~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------------- 80 (421)
T 2ih2_A 26 EVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------------- 80 (421)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------
T ss_pred HHHHHHHHhhcc----CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------
Confidence 467777777652 23569999999999999999984 57899999999876422
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCc---------ch--------
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCA---------NN-------- 239 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta---------~n-------- 239 (298)
.++.+..+|+.+.. ..++||+|++. |+-... ++
T Consensus 81 ---------------------------~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~ 132 (421)
T 2ih2_A 81 ---------------------------PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKA 132 (421)
T ss_dssp ---------------------------TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHH
T ss_pred ---------------------------CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHh
Confidence 14668889988764 35789999995 321111 11
Q ss_pred ----------HHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCC
Q psy3185 240 ----------IVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 240 ----------~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF 292 (298)
...+++.+.++|||||.++-+-|-.|.+.. +.+++++.+.+.|+
T Consensus 133 ~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~---------~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 133 FSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE---------DFALLREFLAREGK 186 (421)
T ss_dssp CTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG---------GGHHHHHHHHHHSE
T ss_pred hhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCc---------cHHHHHHHHHhcCC
Confidence 125789999999999999877775443321 25788888888777
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-11 Score=99.63 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=65.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C----------CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G----------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHH 187 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G----------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~ 187 (298)
++.+|||+|||+|.++..++++ | ..|+|+|+|+.+. .
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~--------~------------------------ 69 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP--------L------------------------ 69 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC--------C------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc--------C------------------------
Confidence 4679999999999999999987 5 6899999998320 0
Q ss_pred cccccccCCCCCCCCCCCCCeeEE-eccccccc--------cCCCceeEEEecccccC----cchH-------HHHHHHH
Q psy3185 188 QTMAVTFPDINTSDYNDDCDFSMA-AGDFLQVY--------VHPNKWDCVATCFFIDC----ANNI-------VSFIETI 247 (298)
Q Consensus 188 ~~r~~~ipd~~~~~~~~~~~~~~~-~gDf~~~~--------~~~~~fD~V~t~ffidt----a~n~-------~~yl~~I 247 (298)
.++.+. .+|+.+.. .++++||+|++.+.++. ..+. ...++++
T Consensus 70 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (196)
T 2nyu_A 70 ------------------EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVT 131 (196)
T ss_dssp ------------------TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 133445 55654432 12468999998654332 1122 4789999
Q ss_pred HHhccCCeEEEE
Q psy3185 248 FNILKPGGIWIN 259 (298)
Q Consensus 248 ~~~LkpGG~~In 259 (298)
.++|||||.++.
T Consensus 132 ~~~LkpgG~lv~ 143 (196)
T 2nyu_A 132 PDILQPGGTFLC 143 (196)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHhcCCCEEEE
Confidence 999999999985
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-10 Score=107.09 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|+.|..|+|+|+|+.|+..++.-+...
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~n----------------------------------- 259 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRL----------------------------------- 259 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHh-----------------------------------
Confidence 679999999999999999999999999999999999887632210
Q ss_pred CCCCCCCCeeEEeccccccccC-CCceeEEEec--cccc-------CcchHHHHHHHHHHhccCCeEEE
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATC--FFID-------CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~--ffid-------ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ...+..+|..++... .+.||+|++. +|.. ......++++.+.++|||||+++
T Consensus 260 -g~----~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv 323 (393)
T 4dmg_A 260 -GL----RVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLW 323 (393)
T ss_dssp -TC----CCEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred -CC----CCcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 00 113457887765321 3459999863 1221 12345678888999999999987
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-10 Score=107.19 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=77.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+.|. .|+|+|+|+.|+..++.-... +
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~----n----------------------------- 263 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------------- 263 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c-----------------------------
Confidence 367999999999999999999986 799999999999988763221 0
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEec--cccc-------CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFID-------CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffid-------ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++.+..+|+.++.. ..++||+|++. +|.. .......++..+.++|||||+++-
T Consensus 264 ---~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 333 (396)
T 2as0_A 264 ---GV--EDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 333 (396)
T ss_dssp ---TC--GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---CC--CccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 0267889999877643 25789999873 2221 124566789999999999998874
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=105.07 Aligned_cols=128 Identities=12% Similarity=0.055 Sum_probs=88.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc--C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|.. + ..|+|+|.|+.|+..++..+.+.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~------------------------------- 307 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------------------------------- 307 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999985 3 68999999999999887643321
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--cCCCceeEEEe---c--c-cccCcchH----------------HHHHHHHHHhc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVAT---C--F-FIDCANNI----------------VSFIETIFNIL 251 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t---~--f-fidta~n~----------------~~yl~~I~~~L 251 (298)
.+ .++.+..+|+.++. ..+++||+|++ | . .+...+++ ...++.+.++|
T Consensus 308 -----g~---~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L 379 (450)
T 2yxl_A 308 -----GI---KIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV 379 (450)
T ss_dssp -----TC---CSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTE
T ss_pred -----CC---CcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 25778888887764 23378999885 2 2 23322222 57899999999
Q ss_pred cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhC-CCEEE
Q psy3185 252 KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGL-GFVYE 295 (298)
Q Consensus 252 kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~-GF~i~ 295 (298)
||||.++-...-. +. +=+.+.+..++++. ||+++
T Consensus 380 kpGG~lvy~tcs~-~~---------~ene~~v~~~l~~~~~~~~~ 414 (450)
T 2yxl_A 380 KPGGRLLYTTCSI-FK---------EENEKNIRWFLNVHPEFKLV 414 (450)
T ss_dssp EEEEEEEEEESCC-CG---------GGTHHHHHHHHHHCSSCEEC
T ss_pred CCCcEEEEEeCCC-Ch---------hhHHHHHHHHHHhCCCCEEe
Confidence 9999997322111 11 11245677777775 78764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.08 E-value=9.9e-10 Score=98.00 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=76.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+..+. .++.+|||+|||+|.++..|+++|..|+|+|+|+.|+..++..+.
T Consensus 18 ~~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~-------------------- 73 (244)
T 1qam_A 18 NIDKIMTNIRL----NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV-------------------- 73 (244)
T ss_dssp HHHHHHTTCCC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHhCCC----CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhc--------------------
Confidence 66777766643 246799999999999999999999999999999999998875211
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC-CceeEEEec-ccccCcchHHHHH--------------HH
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATC-FFIDCANNIVSFI--------------ET 246 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~-ffidta~n~~~yl--------------~~ 246 (298)
...++.+..||+.++..++ ..|++|... |.+.+ +-+...+ +.
T Consensus 74 ---------------------~~~~v~~~~~D~~~~~~~~~~~~~vv~nlPy~~~~-~~l~~~l~~~~~~~~~lm~q~e~ 131 (244)
T 1qam_A 74 ---------------------DHDNFQVLNKDILQFKFPKNQSYKIFGNIPYNIST-DIIRKIVFDSIADEIYLIVEYGF 131 (244)
T ss_dssp ---------------------TCCSEEEECCCGGGCCCCSSCCCEEEEECCGGGHH-HHHHHHHHSCCCSEEEEEEEHHH
T ss_pred ---------------------cCCCeEEEEChHHhCCcccCCCeEEEEeCCcccCH-HHHHHHHhcCCCCeEEEEEEHHH
Confidence 0137889999998876543 456544432 33321 1122222 55
Q ss_pred HHHhccCCeEE
Q psy3185 247 IFNILKPGGIW 257 (298)
Q Consensus 247 I~~~LkpGG~~ 257 (298)
..++|+|||.+
T Consensus 132 a~rll~~~G~l 142 (244)
T 1qam_A 132 AKRLLNTKRSL 142 (244)
T ss_dssp HHHHTCTTSHH
T ss_pred HHHHhcCCcch
Confidence 88899998854
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-10 Score=102.67 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=72.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+..+. .++.+|||+|||+|.++..|+++|..|+|+|+|+.|+..++......
T Consensus 30 i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~------------------ 87 (299)
T 2h1r_A 30 ILDKIIYAAKI----KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYE------------------ 87 (299)
T ss_dssp HHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCC----CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc------------------
Confidence 44444444432 24679999999999999999999999999999999999887633210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc-chHHHHH---------------HH
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA-NNIVSFI---------------ET 246 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta-~n~~~yl---------------~~ 246 (298)
. ..++.+..||+.++.. ++||+|++..-.... +.+...+ +.
T Consensus 88 ------------------~---~~~v~~~~~D~~~~~~--~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~ 144 (299)
T 2h1r_A 88 ------------------G---YNNLEVYEGDAIKTVF--PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEF 144 (299)
T ss_dssp ------------------T---CCCEEC----CCSSCC--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHH
T ss_pred ------------------C---CCceEEEECchhhCCc--ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHH
Confidence 0 0367888999987743 489999886433322 2234444 45
Q ss_pred HHHhccCCe
Q psy3185 247 IFNILKPGG 255 (298)
Q Consensus 247 I~~~LkpGG 255 (298)
..++++|+|
T Consensus 145 a~rlla~~G 153 (299)
T 2h1r_A 145 AERMLANVG 153 (299)
T ss_dssp HHHHTCCTT
T ss_pred HHHHhcCCC
Confidence 778999877
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=106.77 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=76.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|+.+..|+|+|+|+.|+..++.-... +
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~----n------------------------------- 254 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N------------------------------- 254 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T-------------------------------
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH----c-------------------------------
Confidence 56899999999999999999877899999999999988763221 0
Q ss_pred CCCCCCCCeeEEeccccccccC----CCceeEEEec--ccc-------cCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVH----PNKWDCVATC--FFI-------DCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~----~~~fD~V~t~--ffi-------dta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.+..+|+.++... .++||+|++. +|- +.......++..+.++|||||+++.
T Consensus 255 -~~---~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 323 (382)
T 1wxx_A 255 -GL---GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 323 (382)
T ss_dssp -TC---TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -CC---CCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 00 2478899998776432 5789999863 111 1124556789999999999999874
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-10 Score=103.91 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=84.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++.. |+.+..|+|+|.|+.|+..++.-+.. +
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~----n------------------------------- 239 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKL----N------------------------------- 239 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHH----T-------------------------------
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHH----c-------------------------------
Confidence 67999999999999999 98667899999999999988763221 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPS 279 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls 279 (298)
.+ ..++.+..+|+.++. ++||+|+.. ......++++.+.++|+|||+++... +. +.
T Consensus 240 -~l--~~~v~~~~~D~~~~~---~~fD~Vi~d----pP~~~~~~l~~~~~~L~~gG~l~~~~-----~~-----~~---- 295 (336)
T 2yx1_A 240 -KL--EHKIIPILSDVREVD---VKGNRVIMN----LPKFAHKFIDKALDIVEEGGVIHYYT-----IG-----KD---- 295 (336)
T ss_dssp -TC--TTTEEEEESCGGGCC---CCEEEEEEC----CTTTGGGGHHHHHHHEEEEEEEEEEE-----EE-----SS----
T ss_pred -CC--CCcEEEEECChHHhc---CCCcEEEEC----CcHhHHHHHHHHHHHcCCCCEEEEEE-----ee-----cC----
Confidence 01 136889999998875 789999864 22223478999999999999876321 11 11
Q ss_pred HHHHHHHHHhC-CCEEE
Q psy3185 280 YEVVKQVIQGL-GFVYE 295 (298)
Q Consensus 280 ~eEl~~~~~~~-GF~i~ 295 (298)
.+++.+.+.+. ||++.
T Consensus 296 ~~~~~~~l~~~~~~~i~ 312 (336)
T 2yx1_A 296 FDKAIKLFEKKCDCEVL 312 (336)
T ss_dssp SHHHHHHHHHHSEEEEE
T ss_pred chHHHHHHHHhcCCcEE
Confidence 34555666655 77754
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-10 Score=100.68 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=107.9
Q ss_pred ChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccc
Q psy3185 92 GSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNV 169 (298)
Q Consensus 92 g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~ 169 (298)
.-.||-++|+++...+...++ ...+|||+|||+|-|+..++... ..++|+|++..|+..++..+...
T Consensus 111 STreRLp~lD~fY~~i~~~i~------~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----- 179 (281)
T 3lcv_B 111 STRERLPHLDEFYRELFRHLP------RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----- 179 (281)
T ss_dssp HHHHHGGGHHHHHHHHGGGSC------CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT-----
T ss_pred CHHHHhHhHHHHHHHHHhccC------CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----
Confidence 346888999999888888775 25699999999999999998873 57999999999999988754320
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHH-HHHHHH
Q psy3185 170 YKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVS-FIETIF 248 (298)
Q Consensus 170 ~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~-yl~~I~ 248 (298)
+....+..+|+..-. ..++||+|++.-.|+..++... ..-.+.
T Consensus 180 -----------------------------------g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~~ll 223 (281)
T 3lcv_B 180 -----------------------------------NVPHRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGWEVI 223 (281)
T ss_dssp -----------------------------------TCCEEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHHHHH
T ss_pred -----------------------------------CCCceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHHHHH
Confidence 124677888887654 4689999998877766554321 333899
Q ss_pred HhccCCeEEEEeccccccccCCCC-CCcc-CCCHHHHHHHHHhCCCEEEE
Q psy3185 249 NILKPGGIWINLGPLLYHYSNMLN-EDSI-EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 249 ~~LkpGG~~In~gPl~y~~~~~~~-~~~~-~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|+|||++||+.- ....+ .+.+ +.-.+.+.+.+...|+.+.+
T Consensus 224 ~aL~~~~vvVSfp~-----ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 224 DIVNSPNIVVTFPT-----KSLGQRSKGMFQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHSSCSEEEEEEEC-----C-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHhCCCCEEEeccc-----hhhcCCCcchhhHHHHHHHHHHHhcCCceee
Confidence 99999999998621 10101 0111 12246667777777775543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=105.82 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=78.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|. .|+|+|+|+.|+..++.-... +
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~----n------------------------------ 266 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N------------------------------ 266 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 56999999999999999999985 799999999999988763221 0
Q ss_pred CCCCCCCCCeeEEeccccccccC----CCceeEEEec--cc-------ccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH----PNKWDCVATC--FF-------IDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~----~~~fD~V~t~--ff-------idta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.++ ..++.+..+|+.++... .++||+|++. +| .+.......++..+.++|||||+++.
T Consensus 267 --gl~-~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 337 (396)
T 3c0k_A 267 --KLD-LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT 337 (396)
T ss_dssp --TCC-GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred --CCC-ccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 02678899998776431 4689998874 11 22335677899999999999999873
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=102.50 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=87.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-------CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMA 191 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~ 191 (298)
++.+|||||||+|.++..+++.. ..++|+|+|+.|+..|+..+...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~--------------------------- 182 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------- 182 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---------------------------
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC---------------------------
Confidence 45799999999999999998774 67999999999999887632210
Q ss_pred cccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc---ccC--------------cchH-HHHHHHHHHhccC
Q psy3185 192 VTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF---IDC--------------ANNI-VSFIETIFNILKP 253 (298)
Q Consensus 192 ~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff---idt--------------a~n~-~~yl~~I~~~Lkp 253 (298)
. .++.+..||+.... ..++||+|++.-- +.. ..+. ..+++.+.+.|||
T Consensus 183 ---------g----~~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~ 248 (344)
T 2f8l_A 183 ---------R----QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP 248 (344)
T ss_dssp ---------T----CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE
T ss_pred ---------C----CCceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC
Confidence 0 13567788876643 3578999998721 211 1112 2589999999999
Q ss_pred CeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCE
Q psy3185 254 GGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 254 GG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~ 293 (298)
||+++.+-|--+-.. -..+++++++.+.|+.
T Consensus 249 gG~~~~v~p~~~~~~---------~~~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 249 GGYLFFLVPDAMFGT---------SDFAKVDKFIKKNGHI 279 (344)
T ss_dssp EEEEEEEEEGGGGGS---------TTHHHHHHHHHHHEEE
T ss_pred CCEEEEEECchhcCC---------chHHHHHHHHHhCCeE
Confidence 999876655322111 1258888888887763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-09 Score=102.29 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=87.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|..+..+|+.+ ..|+|+|.|+.|+..++..+.+.
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~-------------------------------- 293 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL-------------------------------- 293 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--------------------------------
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc--------------------------------
Confidence 56799999999999999999985 58999999999999887643320
Q ss_pred CCCCCCCCCCCeeEEeccccccc--cCCCceeEEEe---cc---cccCcchH----------------HHHHHHHHHhcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVAT---CF---FIDCANNI----------------VSFIETIFNILK 252 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t---~f---fidta~n~----------------~~yl~~I~~~Lk 252 (298)
+.++.+..+|+..+. ..+++||+|++ |. .+...+++ ...++.+.++||
T Consensus 294 --------g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk 365 (429)
T 1sqg_A 294 --------GMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 365 (429)
T ss_dssp --------TCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE
T ss_pred --------CCCeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 013567788887764 23578999875 22 22222222 478999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhC-CCEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGL-GFVYE 295 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~-GF~i~ 295 (298)
|||+++-...- ++. +=+.+.+...+++. +|+++
T Consensus 366 pGG~lvystcs-~~~---------~ene~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 366 TGGTLVYATCS-VLP---------EENSLQIKAFLQRTADAELC 399 (429)
T ss_dssp EEEEEEEEESC-CCG---------GGTHHHHHHHHHHCTTCEEC
T ss_pred CCCEEEEEECC-CCh---------hhHHHHHHHHHHhCCCCEEe
Confidence 99998742211 111 11245677777664 57664
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=109.66 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|.. |+|+|.|+.|+..++.-... +
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~----n------------------------------ 585 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL----N------------------------------ 585 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c------------------------------
Confidence 579999999999999999999875 99999999999988763221 0
Q ss_pred CCCCCCCCCeeEEecccccccc-CCCceeEEEec--cc---------ccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC--FF---------IDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~--ff---------idta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+. ..++.++.+|..++.. ..++||+|++. +| .+...+..+.++.+.++|||||+++.
T Consensus 586 --gl~-~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~ 655 (703)
T 3v97_A 586 --GLT-GRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMF 655 (703)
T ss_dssp --TCC-STTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCC-ccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 1368899999887532 45799999873 22 22335567789999999999999983
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=103.66 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=81.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---------------CCeEEEeeCCHHHHHHHHHHHhhhhh
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---------------GYVCQGNEFSLFMLFASNFILNKCRE 166 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---------------G~~v~g~D~S~~Ml~~a~~~l~~~~~ 166 (298)
+|++.+.+.+.+ ..+.+|||||||+|.+...+++. +..++|+|+++.|+..|+.-+..
T Consensus 158 ~v~~~mv~~l~~----~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--- 230 (445)
T 2okc_A 158 PLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--- 230 (445)
T ss_dssp HHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCC----CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH---
Confidence 355555554432 24679999999999999998864 46799999999999988752211
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCc-------
Q psy3185 167 KNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCA------- 237 (298)
Q Consensus 167 ~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta------- 237 (298)
| .+ . ..+..+..||+..... .++||+|++. |.....
T Consensus 231 ----------~------------------g~-----~-~~~~~i~~gD~l~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~ 275 (445)
T 2okc_A 231 ----------H------------------GI-----G-TDRSPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINR 275 (445)
T ss_dssp ----------T------------------TC-----C-SSCCSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCC
T ss_pred ----------h------------------CC-----C-cCCCCEeeCCCCCCcc-cCCcCEEEECCCCCCcccccchhhH
Confidence 0 00 0 0145578888877643 3589999986 332111
Q ss_pred --------chHHHHHHHHHHhccCCeEEEEecc
Q psy3185 238 --------NNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 238 --------~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
..-..+++.+.++|||||.++.+-|
T Consensus 276 ~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 276 PDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp TTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1124799999999999999976655
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-10 Score=103.30 Aligned_cols=109 Identities=13% Similarity=0.172 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.++. .++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..++...
T Consensus 17 ~~~~i~~~~~~----~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~--------------------- 71 (245)
T 1yub_A 17 VLNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKL--------------------- 71 (245)
T ss_dssp THHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTT---------------------
T ss_pred HHHHHHHhcCC----CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHh---------------------
Confidence 44555555542 24679999999999999999999999999999999986543200
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-CCceeEEEec--ccccCcchHH----------HHH----H
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATC--FFIDCANNIV----------SFI----E 245 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~--ffidta~n~~----------~yl----~ 245 (298)
....++.+..+|+.++... +++| .|++. |.+. ..-+. .++ +
T Consensus 72 --------------------~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~-~~~~~~~~~~~~~~~~~lm~q~e 129 (245)
T 1yub_A 72 --------------------KLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLS-TQIIKKVVFESRASDIYLIVEEG 129 (245)
T ss_dssp --------------------TTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSC-HHHHHHHHHHCCCEEEEEEEESS
T ss_pred --------------------ccCCceEEEECChhhcCcccCCCc-EEEEeCCcccc-HHHHHHHHhCCCCCeEEEEeeHH
Confidence 0013788999999887654 3688 45543 3322 11112 233 7
Q ss_pred HHHHhccCCeEEE
Q psy3185 246 TIFNILKPGGIWI 258 (298)
Q Consensus 246 ~I~~~LkpGG~~I 258 (298)
.+.++|||||.+.
T Consensus 130 ~a~rll~~~G~l~ 142 (245)
T 1yub_A 130 FYKRTLDIHRTLG 142 (245)
T ss_dssp HHHHHHCGGGSHH
T ss_pred HHHHHhCCCCchh
Confidence 7999999999875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-10 Score=102.88 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=67.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeC----CHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEF----SLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~----S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
++.+|||+|||+|.++..+|++ ..|+|+|. |+.|+... .
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~-----~------------------------------- 124 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPI-----P------------------------------- 124 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCC-----C-------------------------------
T ss_pred CCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHH-----H-------------------------------
Confidence 4679999999999999999999 48999999 55443100 0
Q ss_pred CCCCCCCCCCCCCeeEEec-cccccccCCCceeEEEecccccCc---ch---HHHHHHHHHHhccCCeEEEE
Q psy3185 195 PDINTSDYNDDCDFSMAAG-DFLQVYVHPNKWDCVATCFFIDCA---NN---IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~g-Df~~~~~~~~~fD~V~t~ffidta---~n---~~~yl~~I~~~LkpGG~~In 259 (298)
..+ .. ..++.+..+ |+.+++ .++||+|++.+...+. .+ ....|+.+.++|||||.++.
T Consensus 125 --~~~--~~-~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 125 --MST--YG-WNLVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp --CCS--TT-GGGEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred --hhh--cC-CCCeEEEeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 000 00 136788888 888764 5689999986433211 11 12578889999999999874
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-09 Score=102.64 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=90.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..||.+ +..|+|+|+|+.|+..++..+.+..
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g------------------------------ 154 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG------------------------------ 154 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC------------------------------
Confidence 4679999999999999999976 3589999999999998877433210
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEe---cc---cccCcch----------------HHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT---CF---FIDCANN----------------IVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t---~f---fidta~n----------------~~~yl~~I~~~Lk 252 (298)
+ .++.++.+|..++.. .+++||+|++ |. .+...++ ..+.|+.+.++||
T Consensus 155 ------~---~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk 225 (456)
T 3m4x_A 155 ------V---SNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK 225 (456)
T ss_dssp ------C---SSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE
T ss_pred ------C---CceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 267788899877642 3579999875 21 1111111 2378999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|||++| |.+.. ...+=+.+.+..++++.||+++.
T Consensus 226 pGG~Lv------YsTCs----~~~eEne~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 226 NKGQLI------YSTCT----FAPEENEEIISWLVENYPVTIEE 259 (456)
T ss_dssp EEEEEE------EEESC----CCGGGTHHHHHHHHHHSSEEEEC
T ss_pred CCcEEE------EEEee----cccccCHHHHHHHHHhCCCEEEe
Confidence 999987 32221 01112367788888888888764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-09 Score=103.44 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=87.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..||++ + ..|+|+|+|+.|+..++..+.+.
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~------------------------------- 149 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------------------------------- 149 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999976 2 57999999999999887743321
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEe---c--c-cccCcc---------h-------HHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT---C--F-FIDCAN---------N-------IVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t---~--f-fidta~---------n-------~~~yl~~I~~~Lk 252 (298)
.- . +.++.+|+.++.. .+++||+|++ | . .+...+ + ..+.++.+.++||
T Consensus 150 -------G~-~-v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk 220 (464)
T 3m6w_A 150 -------GA-P-LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG 220 (464)
T ss_dssp -------CC-C-CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE
T ss_pred -------CC-e-EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 2 6678888877652 3679999874 2 1 111111 1 2678999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhC-CCEEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGL-GFVYEV 296 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~-GF~i~~ 296 (298)
|||++| |.+.. ...+=+.+.+..++++. +|+++.
T Consensus 221 pGG~Lv------ysTCs----~~~eEne~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 221 PGGVLV------YSTCT----FAPEENEGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp EEEEEE------EEESC----CCGGGTHHHHHHHHHHCTTEEEEC
T ss_pred CCcEEE------EEecc----CchhcCHHHHHHHHHHCCCcEEEe
Confidence 999987 22211 01112466677777776 687753
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=97.44 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=68.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++.+|||+|||+|.++..|++++..|+|+|+|+.|+..++..+..
T Consensus 38 i~~~Iv~~l~~----~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~------------------- 94 (295)
T 3gru_A 38 FVNKAVESANL----TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL------------------- 94 (295)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH-------------------
T ss_pred HHHHHHHhcCC----CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc-------------------
Confidence 55666665542 2467999999999999999999999999999999999988763321
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF 232 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f 232 (298)
..++.++.||+.++..++..||+|+++.
T Consensus 95 ----------------------~~~v~vi~gD~l~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 95 ----------------------YNNIEIIWGDALKVDLNKLDFNKVVANL 122 (295)
T ss_dssp ----------------------CSSEEEEESCTTTSCGGGSCCSEEEEEC
T ss_pred ----------------------CCCeEEEECchhhCCcccCCccEEEEeC
Confidence 1378899999998866667899998764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.8e-09 Score=101.13 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..||++ +..|+|+|+|+.|+..++..+.+..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g------------------------------ 166 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG------------------------------ 166 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC------------------------------
Confidence 4679999999999999999986 3689999999999998877433210
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEe---cc---cccCcc----------------hHHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT---CF---FIDCAN----------------NIVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t---~f---fidta~----------------n~~~yl~~I~~~Lk 252 (298)
+ .++.++.+|+.++.. .+++||+|++ |. .+...+ ...+.|+.+.++||
T Consensus 167 ------~---~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk 237 (479)
T 2frx_A 167 ------I---SNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR 237 (479)
T ss_dssp ------C---CSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ------C---CcEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC
Confidence 0 257788899887653 4578999876 32 121111 12468999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||+++
T Consensus 238 pGG~Lv 243 (479)
T 2frx_A 238 PGGTLV 243 (479)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999987
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=96.35 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=81.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC----------------------------------------
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---------------------------------------- 141 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---------------------------------------- 141 (298)
.+...|....+. .++.+|||||||+|.++.++|..+
T Consensus 182 ~lAa~ll~~~~~----~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 182 TLAAGLIYLTPW----KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHHTSCC----CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHhhCC----CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 355666665543 246799999999999999999875
Q ss_pred CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC
Q psy3185 142 YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH 221 (298)
Q Consensus 142 ~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~ 221 (298)
..|+|+|+|+.|+..|+.-+.... + ..++.+..+|+.++..
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~g------------------------------------l--~~~i~~~~~D~~~l~~- 298 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAG------------------------------------V--DEYIEFNVGDATQFKS- 298 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHT------------------------------------C--GGGEEEEECCGGGCCC-
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC------------------------------------C--CCceEEEECChhhcCc-
Confidence 459999999999999987332110 0 1267899999998864
Q ss_pred CCceeEEEec--cc--ccCcchHHHHHHHHHHhccC--CeEE
Q psy3185 222 PNKWDCVATC--FF--IDCANNIVSFIETIFNILKP--GGIW 257 (298)
Q Consensus 222 ~~~fD~V~t~--ff--idta~n~~~yl~~I~~~Lkp--GG~~ 257 (298)
+++||+|++. |. +...+++....+.+.+.||+ ||..
T Consensus 299 ~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 340 (385)
T 3ldu_A 299 EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY 340 (385)
T ss_dssp SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 4699999985 43 22335566777778888886 6544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-09 Score=95.33 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=75.1
Q ss_pred CCCeEEEecccC------cHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGL------GRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQT 189 (298)
Q Consensus 119 ~~~~VLdpGcG~------Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~ 189 (298)
++.+|||+|||+ |. ..++++ +..|+|+|+|+. +
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v----------------------------- 104 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------V----------------------------- 104 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------B-----------------------------
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------C-----------------------------
Confidence 467999999944 65 333433 478999999975 1
Q ss_pred cccccCCCCCCCCCCCCCeeE-EeccccccccCCCceeEEEecccc--------cC---cchHHHHHHHHHHhccCCeEE
Q psy3185 190 MAVTFPDINTSDYNDDCDFSM-AAGDFLQVYVHPNKWDCVATCFFI--------DC---ANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 190 r~~~ipd~~~~~~~~~~~~~~-~~gDf~~~~~~~~~fD~V~t~ffi--------dt---a~n~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+ +.||+.++.. .++||+|++.... +. ..-....++.++++|||||.+
T Consensus 105 ----------------~~v~~~i~gD~~~~~~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~ 167 (290)
T 2xyq_A 105 ----------------SDADSTLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSI 167 (290)
T ss_dssp ----------------CSSSEEEESCGGGCCC-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEE
T ss_pred ----------------CCCEEEEECccccCCc-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEE
Confidence 03446 8889887653 4789999986432 11 222457899999999999999
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+... +... ..+++..++++.||..+
T Consensus 168 v~~~---~~~~----------~~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 168 AVKI---TEHS----------WNADLYKLMGHFSWWTA 192 (290)
T ss_dssp EEEE---CSSS----------CCHHHHHHHTTEEEEEE
T ss_pred EEEE---eccC----------CHHHHHHHHHHcCCcEE
Confidence 8532 1111 13588999999999754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=96.16 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=80.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC----------------------------------------
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY---------------------------------------- 142 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~---------------------------------------- 142 (298)
+...+...... .++..|||||||+|.++.+.|..+.
T Consensus 189 lAa~ll~l~~~----~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 189 MAAALVLLTSW----HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHSCC----CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHhCC----CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 55555555443 2467899999999999999998754
Q ss_pred eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC
Q psy3185 143 VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP 222 (298)
Q Consensus 143 ~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~ 222 (298)
.|+|+|+|+.|+..|+.-+... .+ ...+.+..+|+.++.. +
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~------------------------------------gl--~~~I~~~~~D~~~~~~-~ 305 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEA------------------------------------GL--GDLITFRQLQVADFQT-E 305 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT------------------------------------TC--TTCSEEEECCGGGCCC-C
T ss_pred eEEEEECCHHHHHHHHHHHHHc------------------------------------CC--CCceEEEECChHhCCC-C
Confidence 3999999999999988732210 00 1357899999998864 4
Q ss_pred CceeEEEec--cccc--CcchHHHHHHHHHHhccC--CeEEE
Q psy3185 223 NKWDCVATC--FFID--CANNIVSFIETIFNILKP--GGIWI 258 (298)
Q Consensus 223 ~~fD~V~t~--ffid--ta~n~~~yl~~I~~~Lkp--GG~~I 258 (298)
++||+|++. |... ...++....+.+.+.||+ ||...
T Consensus 306 ~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 306 DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 699999998 5432 234566667777777776 66543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-09 Score=93.61 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=69.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++ +|||+|||+|.++..|+++|..|+|+|+|..|+..++..+.
T Consensus 35 i~~~Iv~~~~~----~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~-------------------- 89 (271)
T 3fut_A 35 HLRRIVEAARP----FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS-------------------- 89 (271)
T ss_dssp HHHHHHHHHCC----CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--------------------
T ss_pred HHHHHHHhcCC----CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--------------------
Confidence 55555555442 246 99999999999999999999999999999999998775210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC-CceeEEEecc--cccCcchHHHHHHH
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCF--FIDCANNIVSFIET 246 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~f--fidta~n~~~yl~~ 246 (298)
..++.++.||+.++..++ ..+|.|+++. .| +.+-+...++.
T Consensus 90 ----------------------~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~i-ss~il~~ll~~ 133 (271)
T 3fut_A 90 ----------------------GLPVRLVFQDALLYPWEEVPQGSLLVANLPYHI-ATPLVTRLLKT 133 (271)
T ss_dssp ----------------------TSSEEEEESCGGGSCGGGSCTTEEEEEEECSSC-CHHHHHHHHHH
T ss_pred ----------------------CCCEEEEECChhhCChhhccCccEEEecCcccc-cHHHHHHHhcC
Confidence 137889999998886543 3688888864 33 23334445544
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=94.26 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=82.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC----------------------------------------
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY---------------------------------------- 142 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~---------------------------------------- 142 (298)
+...+...... .++..||||+||+|.++.+.|..+.
T Consensus 182 LAaall~l~~~----~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 182 MAAAIILLSNW----FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHTTC----CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHhCC----CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 55555555442 2467899999999999999997653
Q ss_pred eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC
Q psy3185 143 VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP 222 (298)
Q Consensus 143 ~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~ 222 (298)
.|+|+|+|+.|+..|+.-+... .+ ...+.+..+|+.++.. +
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~------------------------------------gl--~~~I~~~~~D~~~l~~-~ 298 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREV------------------------------------GL--EDVVKLKQMRLQDFKT-N 298 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT------------------------------------TC--TTTEEEEECCGGGCCC-C
T ss_pred eEEEEECCHHHHHHHHHHHHHc------------------------------------CC--CCceEEEECChHHCCc-c
Confidence 3999999999999988732210 00 1358899999999864 4
Q ss_pred CceeEEEec--cc--ccCcchHHHHHHHHHHhccC--CeEEE
Q psy3185 223 NKWDCVATC--FF--IDCANNIVSFIETIFNILKP--GGIWI 258 (298)
Q Consensus 223 ~~fD~V~t~--ff--idta~n~~~yl~~I~~~Lkp--GG~~I 258 (298)
++||+|++. |- +....++....+.+.+.||+ ||...
T Consensus 299 ~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 299 KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 589999997 54 33446677788888888886 66543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-08 Score=94.73 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..||+.+..|+|+|.|+.|+..|+..... +
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~----n------------------------------ 335 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI----N------------------------------ 335 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H------------------------------
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 357999999999999999999999999999999999988763211 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. .++.+..+|+.++.. .+||+|++.---... ....++.+. .|+|||+++.
T Consensus 336 --g----l~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g~--~~~~~~~l~-~l~p~givyv 385 (425)
T 2jjq_A 336 --N----VDAEFEVASDREVSV--KGFDTVIVDPPRAGL--HPRLVKRLN-REKPGVIVYV 385 (425)
T ss_dssp --T----CCEEEEECCTTTCCC--TTCSEEEECCCTTCS--CHHHHHHHH-HHCCSEEEEE
T ss_pred --C----CcEEEEECChHHcCc--cCCCEEEEcCCccch--HHHHHHHHH-hcCCCcEEEE
Confidence 0 126788899888753 289998874211111 123566665 4899998763
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4e-08 Score=94.67 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=69.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..||+.+..|+|+|.|+.|+..|+.-... +
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~----~------------------------------ 331 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL----N------------------------------ 331 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH----c------------------------------
Confidence 357999999999999999999999999999999999998863211 0
Q ss_pred CCCCCCCCCeeEEeccccccc----cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ .++.+..+|+.+.. ..+++||+|++.-=-.. ..+.++.+.+ ++|++++.
T Consensus 332 --~~---~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g---~~~~~~~l~~-~~p~~ivy 386 (433)
T 1uwv_A 332 --GL---QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIK-LEPIRIVY 386 (433)
T ss_dssp --TC---CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHH-HCCSEEEE
T ss_pred --CC---CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc---HHHHHHHHHh-cCCCeEEE
Confidence 01 26888999987742 23568999987321111 2245555554 78988764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-08 Score=90.06 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.... .++.+|||+|||+|.++..|+++|..|+|+|+|+.|+..++.
T Consensus 17 i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~ 69 (255)
T 3tqs_A 17 VLQKIVSAIHP----QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQK 69 (255)
T ss_dssp HHHHHHHHHCC----CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhcCC----CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 45555555442 246799999999999999999999999999999999998876
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.2e-08 Score=90.72 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=61.8
Q ss_pred eEEeccccccccCCCceeEEEecccccCcc--------------------------------------hHHHHHHHHHHh
Q psy3185 209 SMAAGDFLQVYVHPNKWDCVATCFFIDCAN--------------------------------------NIVSFIETIFNI 250 (298)
Q Consensus 209 ~~~~gDf~~~~~~~~~fD~V~t~ffidta~--------------------------------------n~~~yl~~I~~~ 250 (298)
.-+.|.|-.-.+++++||+|+|++.||+.. |...+|+.+++.
T Consensus 135 ~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~e 214 (374)
T 3b5i_A 135 AGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAE 214 (374)
T ss_dssp EEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655445789999999999988765 455579999999
Q ss_pred ccCCeEEEEe--c-----cc-------cc-c-----ccCC-------------CCCCccCCCHHHHHHHHH-hCCCEEEE
Q psy3185 251 LKPGGIWINL--G-----PL-------LY-H-----YSNM-------------LNEDSIEPSYEVVKQVIQ-GLGFVYEV 296 (298)
Q Consensus 251 LkpGG~~In~--g-----Pl-------~y-~-----~~~~-------------~~~~~~~ls~eEl~~~~~-~~GF~i~~ 296 (298)
|||||.++-. | |. .| . +.+. .+-|....|.+|++.+++ ..||+|.+
T Consensus 215 L~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~ 294 (374)
T 3b5i_A 215 VKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDK 294 (374)
T ss_dssp EEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred hCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEE
Confidence 9999999731 1 11 11 1 0000 123556689999999998 59999976
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-08 Score=95.48 Aligned_cols=123 Identities=22% Similarity=0.183 Sum_probs=80.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----C----------------CeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR----G----------------YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G----------------~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
|.+.+.+.+.+ .++.+|||||||+|.+...+++. + ..++|+|+++.|+..|+.-+-
T Consensus 157 iv~~mv~~l~p----~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 157 LIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc----CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 44554444432 34679999999999999888764 1 369999999999998875321
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEec--ccccC---
Q psy3185 163 KCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATC--FFIDC--- 236 (298)
Q Consensus 163 ~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~--ffidt--- 236 (298)
. |. +.. . + .....+..||+.... ...++||+|++. |....
T Consensus 233 l-------------~g------------------i~~-~-~-~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~ 278 (541)
T 2ar0_A 233 L-------------HD------------------IEG-N-L-DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 278 (541)
T ss_dssp T-------------TT------------------CCC-B-G-GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCC
T ss_pred H-------------hC------------------CCc-c-c-cccCCeEeCCCcccccccccCCeEEEECCCcccccchh
Confidence 0 00 000 0 0 013567888876643 235789999986 32221
Q ss_pred ---------cchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 237 ---------ANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 237 ---------a~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
...-..++..+.+.|||||+++.+-|-
T Consensus 279 ~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 279 ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp CCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 122347999999999999998766663
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=91.47 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=72.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+++.+.+.... .+.+|||+|||+|.++..+|+.+..|+|+|.|+.|+..++.-... +
T Consensus 201 ~l~~~~~~~~~~-----~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~----n------------- 258 (369)
T 3bt7_A 201 QMLEWALDVTKG-----SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA----N------------- 258 (369)
T ss_dssp HHHHHHHHHTTT-----CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHH----T-------------
T ss_pred HHHHHHHHHhhc-----CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c-------------
Confidence 345555555442 246899999999999999999888999999999999988762211 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CC--------------CceeEEEecccccCcchHHHHHH
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HP--------------NKWDCVATCFFIDCANNIVSFIE 245 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~--------------~~fD~V~t~ffidta~n~~~yl~ 245 (298)
.+ .++.+..||..++.. .. ++||+|+. |... ..+.+
T Consensus 259 -------------------g~---~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~----dPPr--~g~~~ 310 (369)
T 3bt7_A 259 -------------------HI---DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV----DPPR--SGLDS 310 (369)
T ss_dssp -------------------TC---CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE----CCCT--TCCCH
T ss_pred -------------------CC---CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE----CcCc--cccHH
Confidence 01 267788888766532 11 37999874 4321 12345
Q ss_pred HHHHhccCCeEEE
Q psy3185 246 TIFNILKPGGIWI 258 (298)
Q Consensus 246 ~I~~~LkpGG~~I 258 (298)
.+.+.|+|+|.++
T Consensus 311 ~~~~~l~~~g~iv 323 (369)
T 3bt7_A 311 ETEKMVQAYPRIL 323 (369)
T ss_dssp HHHHHHTTSSEEE
T ss_pred HHHHHHhCCCEEE
Confidence 5667778888776
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.7e-08 Score=91.78 Aligned_cols=111 Identities=11% Similarity=-0.030 Sum_probs=74.2
Q ss_pred CCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ | ..|+++|.|+.++..++.-+..... ....|+-
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~------------------------~~~~~~~ 103 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFD------------------------GELRESK 103 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCC------------------------SCCEECS
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcc------------------------ccccccc
Confidence 569999999999999999987 4 5799999999999988763221100 0000000
Q ss_pred CCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.......-.++.+..+|..++... .++||+|+. |.--....+++...++|||||+++
T Consensus 104 ~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~l----DP~~~~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 104 GRAILKGEKTIVINHDDANRLMAERHRYFHFIDL----DPFGSPMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp SEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred ccccccCCCceEEEcCcHHHHHHhccCCCCEEEe----CCCCCHHHHHHHHHHhcCCCCEEE
Confidence 000000002478899998776432 468999883 433334688999999999999775
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=9.7e-08 Score=96.09 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHH---HHHHHcC-C--eEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLA---FEIARRG-Y--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla---~ela~~G-~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
|...|....+......+...|||+|||+|-|+ ...++++ - +|+|+|-|+ |...++.+.+.. .
T Consensus 341 I~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N----~------- 408 (637)
T 4gqb_A 341 IYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE----E------- 408 (637)
T ss_dssp HHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH----T-------
T ss_pred HHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc----c-------
Confidence 55556555442222223457999999999994 4444443 2 589999997 666666654321 0
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccC
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKP 253 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~Lkp 253 (298)
+ ...++++.||.+++.. +++.|+|||- +|++.- .+.+.+....|.|||
T Consensus 409 -------------------------~--~dkVtVI~gd~eev~L-PEKVDIIVSEwMG~fLl~E-~mlevL~Ardr~LKP 459 (637)
T 4gqb_A 409 -------------------------W--GSQVTVVSSDMREWVA-PEKADIIVSELLGSFADNE-LSPECLDGAQHFLKD 459 (637)
T ss_dssp -------------------------T--GGGEEEEESCTTTCCC-SSCEEEEECCCCBTTBGGG-CHHHHHHHHGGGEEE
T ss_pred -------------------------C--CCeEEEEeCcceeccC-CcccCEEEEEcCccccccc-CCHHHHHHHHHhcCC
Confidence 1 1478899999999853 5899999984 456543 466889999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+.|
T Consensus 460 gGimi 464 (637)
T 4gqb_A 460 DGVSI 464 (637)
T ss_dssp EEEEE
T ss_pred CcEEc
Confidence 99987
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.56 E-value=6e-08 Score=87.40 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH-------HHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL-------FMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~-------~Ml~~a~~ 159 (298)
++.+|||+|||+|+++..+|+.|..|+|+|.|+ .|+..++.
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~ 130 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALL 130 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHh
Confidence 357999999999999999999999999999999 77776654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-07 Score=84.67 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+..+. .++.+|||+|||+|.++..|+++| .+|+|+|+|..|+..++.
T Consensus 19 i~~~iv~~~~~----~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~ 72 (249)
T 3ftd_A 19 VLKKIAEELNI----EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKS 72 (249)
T ss_dssp HHHHHHHHTTC----CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTT
T ss_pred HHHHHHHhcCC----CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHh
Confidence 66666666653 246799999999999999999996 789999999999987653
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=84.89 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe----EEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV----CQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~----v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.... .++.+|||+|||+|.++..|++++.. |+|+|+|+.|+..++.
T Consensus 30 i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~ 86 (279)
T 3uzu_A 30 VIDAIVAAIRP----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQ 86 (279)
T ss_dssp HHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhcCC----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHH
Confidence 44555554432 24679999999999999999999887 9999999999998876
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.8e-07 Score=89.16 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=75.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-----CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
.+.+||||+||+|.+...+++. ...++|+|+++.|+..|+.-+-- |
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-------------~---------------- 271 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-------------H---------------- 271 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-------------T----------------
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-------------c----------------
Confidence 5679999999999999998876 46799999999999888652110 0
Q ss_pred cCCCCCCCCCCCCCeeEEecccccc--c-cCCCceeEEEec--ccccCc--------------------ch-HHHHHHHH
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQV--Y-VHPNKWDCVATC--FFIDCA--------------------NN-IVSFIETI 247 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~--~-~~~~~fD~V~t~--ffidta--------------------~n-~~~yl~~I 247 (298)
.+. ..++.+..||+... + ....+||+|+++ |..... .+ -..++..+
T Consensus 272 --gi~------~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~ 343 (542)
T 3lkd_A 272 --GVP------IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHG 343 (542)
T ss_dssp --TCC------GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHH
T ss_pred --CCC------cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHH
Confidence 000 02566788887765 2 245789999876 322110 00 13589999
Q ss_pred HHhcc-CCeEEEEeccc
Q psy3185 248 FNILK-PGGIWINLGPL 263 (298)
Q Consensus 248 ~~~Lk-pGG~~In~gPl 263 (298)
.+.|| |||+...+-|-
T Consensus 344 l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 344 YYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp HHTBCTTTCEEEEEEET
T ss_pred HHHhCCCceeEEEEecc
Confidence 99999 99998766664
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.9e-07 Score=91.22 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-----------------------------------------
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG----------------------------------------- 141 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G----------------------------------------- 141 (298)
+...+...... .++..||||+||+|.++.+.|..+
T Consensus 178 LAa~ll~~~~~----~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 178 LAAAIVMRSGW----QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp HHHHHHHHTTC----CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC----CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 55555555442 246789999999999999998753
Q ss_pred ---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc
Q psy3185 142 ---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV 218 (298)
Q Consensus 142 ---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~ 218 (298)
..++|+|+++.|+..|+.-+... .+ ...+.+..+|+.++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~a------------------------------------gv--~~~i~~~~~D~~~~ 295 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRARTNARLA------------------------------------GI--GELITFEVKDVAQL 295 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHHHHHHT------------------------------------TC--GGGEEEEECCGGGC
T ss_pred cCCccEEEEECCHHHHHHHHHHHHHc------------------------------------CC--CCceEEEECChhhC
Confidence 46999999999999988632210 00 12478999999887
Q ss_pred ccC--CCceeEEEec--cc--ccCcchHHHHHHHHHHh---ccCCeEEEE
Q psy3185 219 YVH--PNKWDCVATC--FF--IDCANNIVSFIETIFNI---LKPGGIWIN 259 (298)
Q Consensus 219 ~~~--~~~fD~V~t~--ff--idta~n~~~yl~~I~~~---LkpGG~~In 259 (298)
..+ .++||+|+|. |- +....++....+.+.+. ++|||....
T Consensus 296 ~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 296 TNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp CCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 433 3489999998 54 33444555555555544 458987653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-07 Score=87.12 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=57.6
Q ss_pred EeccccccccCCCceeEEEecccccCcchHH----------------------------H-----------HHHHHHHhc
Q psy3185 211 AAGDFLQVYVHPNKWDCVATCFFIDCANNIV----------------------------S-----------FIETIFNIL 251 (298)
Q Consensus 211 ~~gDf~~~~~~~~~fD~V~t~ffidta~n~~----------------------------~-----------yl~~I~~~L 251 (298)
+.|.|-.-.++++++|+|+|++.+|+..++. . +|+..++.|
T Consensus 136 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL 215 (384)
T 2efj_A 136 MPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEEL 215 (384)
T ss_dssp CCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445544445789999999999888754321 2 388889999
Q ss_pred cCCeEEEEe--c-------cc---c----cc------c-----cCCCCCCccCCCHHHHHHHHHhC-CCEEEEe
Q psy3185 252 KPGGIWINL--G-------PL---L----YH------Y-----SNMLNEDSIEPSYEVVKQVIQGL-GFVYEVE 297 (298)
Q Consensus 252 kpGG~~In~--g-------Pl---~----y~------~-----~~~~~~~~~~ls~eEl~~~~~~~-GF~i~~~ 297 (298)
||||.++-. | |. + |. . -+..+-|...+|.+|++.++++. ||+|.+.
T Consensus 216 ~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 216 ISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp EEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred ccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 999999732 1 10 0 00 0 00012356678999999999987 5898763
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=85.94 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|..+..++++ +..|+|+|.|+.|+..++..+..
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~--------------------------------- 72 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE--------------------------------- 72 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG---------------------------------
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 4679999999999999999988 47899999999999998863211
Q ss_pred CCCCCCCCCCCeeEEecccccccc--C---CCceeEEEec
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--H---PNKWDCVATC 231 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~---~~~fD~V~t~ 231 (298)
.. .++.++.+||.++.. . .++||+|+..
T Consensus 73 -----~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 73 -----FS--DRVSLFKVSYREADFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp -----GT--TTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred -----cC--CcEEEEECCHHHHHHHHHhcCCCCCCEEEEc
Confidence 01 378899999988742 1 1589988753
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-07 Score=81.75 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=83.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc-------C-------CeEEEeeCCH---HHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-------G-------YVCQGNEFSL---FMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-------G-------~~v~g~D~S~---~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+..+||++|+|+|..+..+++. + -.++++|..+ .|+..+..... .+.+++.....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p--------~l~~~a~~l~~ 131 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWP--------ELAPWAEQLQA 131 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCG--------GGHHHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcCh--------hHHHHHHHHHH
Confidence 4579999999999988776542 2 3689999655 77765431000 00000000000
Q ss_pred cccccccccccccCCCCCCCC-CCCCCeeEEeccccccccC-CC----ceeEEEe-cccccCcch--HHHHHHHHHHhcc
Q psy3185 182 NILTHHQTMAVTFPDINTSDY-NDDCDFSMAAGDFLQVYVH-PN----KWDCVAT-CFFIDCANN--IVSFIETIFNILK 252 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~-~~~~~~~~~~gDf~~~~~~-~~----~fD~V~t-~ffidta~n--~~~yl~~I~~~Lk 252 (298)
+. +..+|.+.-..+ ....++.+..||+.+.... ++ .||+|+- .|.-...+. -.++++.++++||
T Consensus 132 ------~w-~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~ 204 (257)
T 2qy6_A 132 ------QW-PMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR 204 (257)
T ss_dssp ------TC-CCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE
T ss_pred ------hc-cccccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC
Confidence 00 000000000000 0124788999999885432 22 7998864 332222223 2579999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|||+++.+.. ...+++.+..+||++.+
T Consensus 205 pGG~l~tysa-----------------a~~vrr~L~~aGF~v~~ 231 (257)
T 2qy6_A 205 PGGTLATFTS-----------------AGFVRRGLQEAGFTMQK 231 (257)
T ss_dssp EEEEEEESCC-----------------BHHHHHHHHHHTEEEEE
T ss_pred CCcEEEEEeC-----------------CHHHHHHHHHCCCEEEe
Confidence 9999985321 23678888899999875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.7e-07 Score=88.75 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=80.6
Q ss_pred CCeEEEecccCcHHHHHHHHc-----------------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-----------------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-----------------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..+||||+||+|.+...+++. ...++|+|+++.|+..|+.-+-- |
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-------------~----- 306 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-------------R----- 306 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-------------T-----
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-------------h-----
Confidence 349999999999998887542 35799999999999888752210 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEec--cccc-C----------------------
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATC--FFID-C---------------------- 236 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~--ffid-t---------------------- 236 (298)
.+ . .++.+..||+.... ....+||+|++. |... +
T Consensus 307 -------------gi-----~--~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~ 366 (544)
T 3khk_A 307 -------------GI-----D--FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRIL 366 (544)
T ss_dssp -------------TC-----C--CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEEC
T ss_pred -------------CC-----C--cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccc
Confidence 00 0 12233556654432 234688888875 4321 0
Q ss_pred ----cchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCC
Q psy3185 237 ----ANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 237 ----a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF 292 (298)
...-..+++.+.+.|||||....+-|--+-+.. .-....+++.+.+.+.
T Consensus 367 ~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~-------~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 367 TPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN-------TNNEGEIRKTLVEQDL 419 (544)
T ss_dssp CCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC-------GGGHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcC-------cchHHHHHHHHHhCCc
Confidence 011236899999999999998777663322221 0125678887776554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=83.63 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=77.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|-|.|..+.++.+. + -.|+.+|+.+.++..++.-+.....
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~------------------------------ 132 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA------------------------------ 132 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT------------------------------
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc------------------------------
Confidence 3679999999999999999987 3 4799999999999998763321000
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccc--cCcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFI--DCANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffi--dta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
. . ....++.++.+|...+.. ..++||+|+.-.+= ..+..+ .++++.++++|+|||+++.
T Consensus 133 -~--~-~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 133 -G--S-YDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp -T--G-GGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred -c--c-cCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 0 0 012478999999887754 35899998764321 112222 3799999999999999984
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-07 Score=81.91 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.... .++.+|||+|||+|.++. +++ +.. |+|+|+|+.|+..++.
T Consensus 9 i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~ 61 (252)
T 1qyr_A 9 VIDSIVSAINP----QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQT 61 (252)
T ss_dssp HHHHHHHHHCC----CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHT
T ss_pred HHHHHHHhcCC----CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHH
Confidence 45555554432 246799999999999999 764 677 9999999999988764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-07 Score=87.90 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=57.5
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|..+..+|+.|..|+|+|.|+.|+..++.-+....
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~---------------------------------- 139 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLL---------------------------------- 139 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHS----------------------------------
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhc----------------------------------
Confidence 6799999999999999999999999999999999999887322100
Q ss_pred CCCCCCCCeeEEecccccccc--CCCceeEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYV--HPNKWDCVAT 230 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t 230 (298)
..+ .++.++.+|+.++.. ..++||+|+.
T Consensus 140 ~gl---~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 140 NEG---KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTT---CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred cCC---CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 000 368899999887532 2368999876
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=86.41 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=90.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc------------------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR------------------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~------------------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+..+|+|+||++|..+..+... .++|..+|+...+....-..|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L------------------- 111 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL------------------- 111 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT-------------------
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhc-------------------
Confidence 4678999999999988765543 256778888777665432211
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch---------------------
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--------------------- 239 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--------------------- 239 (298)
|...... ...=+.-+.|.|-.-.++++++|+|+|++.||+...
T Consensus 112 --------------~~~~~~~--~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~ 175 (359)
T 1m6e_X 112 --------------PIENDVD--GVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175 (359)
T ss_dssp --------------TTSCSCT--TCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCT
T ss_pred --------------chhcccC--CCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHH
Confidence 1000000 001123355666554457899999999998887543
Q ss_pred ------------HHHHHHHHHHhccCCeEEEEe-------cc------cccc-----c-----cCC--------CCCCcc
Q psy3185 240 ------------IVSFIETIFNILKPGGIWINL-------GP------LLYH-----Y-----SNM--------LNEDSI 276 (298)
Q Consensus 240 ------------~~~yl~~I~~~LkpGG~~In~-------gP------l~y~-----~-----~~~--------~~~~~~ 276 (298)
...+|+..++.|||||.++-. +| .+|. + ++. .+-|..
T Consensus 176 v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y 255 (359)
T 1m6e_X 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQY 255 (359)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCcc
Confidence 334699999999999999731 22 1121 0 000 123556
Q ss_pred CCCHHHHHHHHHhCC-CEEEE
Q psy3185 277 EPSYEVVKQVIQGLG-FVYEV 296 (298)
Q Consensus 277 ~ls~eEl~~~~~~~G-F~i~~ 296 (298)
.+|.+|++.++++.| |+|.+
T Consensus 256 ~ps~~E~~~~ie~~G~F~i~~ 276 (359)
T 1m6e_X 256 TPSPTEVEAEILKEGSFLIDH 276 (359)
T ss_dssp CCCSHHHHHHHHHTTTBCCEE
T ss_pred CCCHHHHHHHHHHcCCceEEE
Confidence 789999999999885 57764
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.40 E-value=7.7e-07 Score=90.02 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=76.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHH---HH-cC-----------CeEEEeeCCHHHHHHHHHHHhhhhhc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEI---AR-RG-----------YVCQGNEFSLFMLFASNFILNKCREK 167 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~el---a~-~G-----------~~v~g~D~S~~Ml~~a~~~l~~~~~~ 167 (298)
|...+...++. ...+..|||+|||+|-|+... ++ .| ..|+|+|.|+......+.+..
T Consensus 396 I~~al~d~~~~---~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~----- 467 (745)
T 3ua3_A 396 VVGALKDLGAD---GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV----- 467 (745)
T ss_dssp HHHHHHHHHTT---CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhcc---cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-----
Confidence 44445544431 123467999999999996432 22 23 379999999966554443211
Q ss_pred cccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-----CCceeEEEec---ccccCcch
Q psy3185 168 NVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-----PNKWDCVATC---FFIDCANN 239 (298)
Q Consensus 168 ~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-----~~~fD~V~t~---ffidta~n 239 (298)
+. + ...+.++.||.+++..+ .++.|+|||- +|++.. -
T Consensus 468 Ng--------------------------------~--~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nE-L 512 (745)
T 3ua3_A 468 RT--------------------------------W--KRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNE-L 512 (745)
T ss_dssp HT--------------------------------T--TTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGG-S
T ss_pred cC--------------------------------C--CCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchh-c
Confidence 00 1 13688999999998653 6899999985 456543 3
Q ss_pred HHHHHHHHHHhccCCeEEE
Q psy3185 240 IVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 240 ~~~yl~~I~~~LkpGG~~I 258 (298)
..+.|..+.+.|||||+.|
T Consensus 513 ~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 513 SPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHTTGGGSCTTCEEE
T ss_pred cHHHHHHHHHhCCCCcEEE
Confidence 5678888899999999987
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.7e-07 Score=85.30 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=71.8
Q ss_pred CCeEEEecccCcHHHHHHHHc--C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||++||+|.++.++|++ | -.|++||.|+.++..++.-+.. +
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~----N---------------------------- 100 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL----N---------------------------- 100 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH----T----------------------------
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----h----------------------------
Confidence 579999999999999999985 5 4699999999999888762221 0
Q ss_pred CCCCCCCCCCC-eeEEecccccccc-C-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCD-FSMAAGDFLQVYV-H-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~-~~~~~gDf~~~~~-~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..+ +.+..+|..++.. . .++||+|+. |.......+++.+.++|||||+++
T Consensus 101 ----gl--~~~~v~v~~~Da~~~l~~~~~~~fD~V~l----DP~g~~~~~l~~a~~~Lk~gGll~ 155 (392)
T 3axs_A 101 ----NI--PEDRYEIHGMEANFFLRKEWGFGFDYVDL----DPFGTPVPFIESVALSMKRGGILS 155 (392)
T ss_dssp ----TC--CGGGEEEECSCHHHHHHSCCSSCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred ----CC--CCceEEEEeCCHHHHHHHhhCCCCcEEEE----CCCcCHHHHHHHHHHHhCCCCEEE
Confidence 00 023 7888999876643 2 468999864 432223568999999999999775
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-06 Score=77.60 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..||.. ...|+|+|.|+.|+..++..+.+.
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~------------------------------- 150 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------------------------------- 150 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999985 268999999999999887744321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCC---CceeEEEe
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHP---NKWDCVAT 230 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t 230 (298)
.+ .++.++.+|+.++.... ++||+|+.
T Consensus 151 -----g~---~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 151 -----GV---SCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp -----TC---CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred -----CC---CeEEEEeCChHhcCccccccCCCCEEEE
Confidence 00 26788899988875322 57998874
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-07 Score=80.11 Aligned_cols=81 Identities=19% Similarity=0.121 Sum_probs=57.7
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
.+|||+|||+|+.+.++|.+|..|+++|.|+.|...++..+.++... ..+-.|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~--~~~~~~------------------------- 142 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD--AEIGGW------------------------- 142 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHC--TTTHHH-------------------------
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhh--Hhhhhh-------------------------
Confidence 79999999999999999999999999999999988777655443210 000000
Q ss_pred CCCCCCCeeEEecccccccc-CCCceeEEEec
Q psy3185 201 DYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC 231 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ 231 (298)
+ ..++.++.+|..++.. ..++||+|+.-
T Consensus 143 -l--~~~i~~~~~D~~~~L~~~~~~fDvV~lD 171 (258)
T 2oyr_A 143 -L--QERLQLIHASSLTALTDITPRPQVVYLD 171 (258)
T ss_dssp -H--HHHEEEEESCHHHHSTTCSSCCSEEEEC
T ss_pred -h--hcCEEEEECCHHHHHHhCcccCCEEEEc
Confidence 0 0257889999877532 23479998763
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=87.35 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-----CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-----YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-----~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
++.+|||||||+|.++..+++.. ..++|+|+++.++..|+..+|.... . .. |
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN--~-Ll----h---------------- 377 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP--Q-LV----S---------------- 377 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST--T-TC----B----------------
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh--h-hh----c----------------
Confidence 46799999999999999999863 3699999999999988443332100 0 00 0
Q ss_pred cCCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEec--ccccCc--c------------------------h-HHHH
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATC--FFIDCA--N------------------------N-IVSF 243 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~--ffidta--~------------------------n-~~~y 243 (298)
. .....+..+|+.... ...++||+|++. |..... . + ...+
T Consensus 378 -------G---i~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aF 447 (878)
T 3s1s_A 378 -------S---NNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALF 447 (878)
T ss_dssp -------T---TBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHH
T ss_pred -------C---CCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHH
Confidence 0 012234556666532 234789999986 432110 0 1 2347
Q ss_pred HHHHHHhccCCeEEEEeccccc
Q psy3185 244 IETIFNILKPGGIWINLGPLLY 265 (298)
Q Consensus 244 l~~I~~~LkpGG~~In~gPl~y 265 (298)
++.+.++|||||.+..+-|--|
T Consensus 448 Ie~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 448 LELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp HHHHHHHSCTTCEEEEEEETHH
T ss_pred HHHHHHhcCCCcEEEEEEChHH
Confidence 8889999999999987666433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.4e-06 Score=77.96 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=76.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+||++|-|.|..+.++.+... .|+.+|+.+.++..++.-+. .... .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp------------~~~~-----------------~- 254 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMR------------KTCG-----------------D- 254 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCC------------C----------------------
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhch------------hhhh-----------------h-
Confidence 457999999999999999998754 59999999999999876221 1000 0
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEecccc---cC-----cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATCFFI---DC-----ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~ffi---dt-----a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
....+...++.++.+|...+.. ..++||+|+.-.+= .+ +..+ .++++.++++|+|||+++.
T Consensus 255 -~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 255 -VLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp -CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -hhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0000122468899999877642 34689998764321 11 1122 3688999999999999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-05 Score=66.98 Aligned_cols=96 Identities=15% Similarity=-0.018 Sum_probs=67.0
Q ss_pred CCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
..+||++|| |.-+..+|+. +..|+.+|.++.+...++..+.+..
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g--------------------------------- 75 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANP--------------------------------- 75 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSC---------------------------------
T ss_pred CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC---------------------------------
Confidence 469999998 4788888887 7899999999999998887554311
Q ss_pred CCCCCCCCCeeEEecccccc-----------------c-------cCCCceeEEEecccccCcchHHHHHHHHHHhccCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQV-----------------Y-------VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~-----------------~-------~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG 254 (298)
+....++.+..||..+. | ...++||+|+ ||-... ..|+..+.++|+||
T Consensus 76 ---~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIf----IDg~k~-~~~~~~~l~~l~~G 147 (202)
T 3cvo_A 76 ---PAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVL----VDGRFR-VGCALATAFSITRP 147 (202)
T ss_dssp ---CCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEE----ECSSSH-HHHHHHHHHHCSSC
T ss_pred ---CCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEE----EeCCCc-hhHHHHHHHhcCCC
Confidence 00013566666664332 1 1237899875 564432 47788888999999
Q ss_pred eEEE
Q psy3185 255 GIWI 258 (298)
Q Consensus 255 G~~I 258 (298)
|++|
T Consensus 148 G~Iv 151 (202)
T 3cvo_A 148 VTLL 151 (202)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9997
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=71.50 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=60.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++..+||.+||.|..+..|++++..|+|+|.++.|+..++. +.
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~------------------------------------ 64 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LH------------------------------------ 64 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TC------------------------------------
T ss_pred CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hc------------------------------------
Confidence 46799999999999999999998899999999999998875 32
Q ss_pred CCCCCCCCCeeEEecccccccc-----CCCceeEEE-----ecccccCcc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-----HPNKWDCVA-----TCFFIDCAN 238 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-----~~~~fD~V~-----t~ffidta~ 238 (298)
. .++.++.++|.++.. ..+++|+|+ |++-+|+++
T Consensus 65 ----~--~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DLGvSS~Qld~~~ 108 (285)
T 1wg8_A 65 ----L--PGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPS 108 (285)
T ss_dssp ----C--TTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGG
T ss_pred ----c--CCEEEEECCcchHHHHHHHcCCCCcCEEEeCCccccccccccc
Confidence 0 268899999988742 125788876 445555543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.2e-05 Score=70.06 Aligned_cols=111 Identities=13% Similarity=0.019 Sum_probs=66.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+++..++.+- .++.+|||+|||.|..+...+.+ |. .|+|+|++..|.. . |
T Consensus 63 L~ei~ek~~l-----~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~-------~----------p------ 114 (277)
T 3evf_A 63 LRWFHERGYV-----KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE-------K----------P------ 114 (277)
T ss_dssp HHHHHHTTSS-----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC-------C----------C------
T ss_pred HHHHHHhCCC-----CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc-------c----------c------
Confidence 5555555322 24568999999999999988876 54 5889998854310 0 0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc------hHHHHHHHHHHhccCC
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN------NIVSFIETIFNILKPG 254 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~------n~~~yl~~I~~~LkpG 254 (298)
+|.. +...++....+++.......++||+|++-...++.. .....++.+.++||||
T Consensus 115 -------------i~~~-----~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG 176 (277)
T 3evf_A 115 -------------MNVQ-----SLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACG 176 (277)
T ss_dssp -------------CCCC-----BTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------cccC-----cCCCCeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence 0000 001133334444433333567899999876444211 1123467888999999
Q ss_pred -eEEEE
Q psy3185 255 -GIWIN 259 (298)
Q Consensus 255 -G~~In 259 (298)
|.||.
T Consensus 177 ~G~FV~ 182 (277)
T 3evf_A 177 VDNFCV 182 (277)
T ss_dssp CSEEEE
T ss_pred CCeEEE
Confidence 99984
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=71.60 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+++.+.+.+. .++..||||+||+|.++.++++.|..++|+|+++.|+..++..+.
T Consensus 224 l~~~~i~~~~-----~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 224 LAERLVRMFS-----FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp HHHHHHHHHC-----CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4555554443 246799999999999999999999999999999999999887554
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.87 E-value=2e-05 Score=64.98 Aligned_cols=46 Identities=11% Similarity=-0.058 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCc-HHHHHHHH-cCCeEEEeeCCHHH
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLG-RLAFEIAR-RGYVCQGNEFSLFM 153 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~G-rla~ela~-~G~~v~g~D~S~~M 153 (298)
.|.++|.+.+. .+.+||++|||.| +.|..||+ .|++|+++|+|+..
T Consensus 24 ~LaeYI~~~~~------~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A 71 (153)
T 2k4m_A 24 DLAVYIIRCSG------PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH 71 (153)
T ss_dssp HHHHHHHHHSC------SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS
T ss_pred HHHHHHHhcCC------CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccc
Confidence 47777777664 2579999999999 89999997 89999999999863
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.4e-05 Score=70.51 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=79.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+||+.|.-++.++++|..|+|||..+ |-....
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~l~---------------------------------------- 249 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSLM---------------------------------------- 249 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHHHH----------------------------------------
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChhhc----------------------------------------
Confidence 478999999999999999999999999999864 211100
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCC---eEEEEec-cccccccCCCCCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG---GIWINLG-PLLYHYSNMLNED 274 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG---G~~In~g-Pl~y~~~~~~~~~ 274 (298)
...++.+..+|+..+.+..+.+|+|+| |-+.++....+.+.+.|..| +..+|+- |+.-.+.
T Consensus 250 -----~~~~V~~~~~d~~~~~~~~~~~D~vvs----Dm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~------ 314 (375)
T 4auk_A 250 -----DTGQVTWLREDGFKFRPTRSNISWMVC----DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYE------ 314 (375)
T ss_dssp -----TTTCEEEECSCTTTCCCCSSCEEEEEE----CCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHH------
T ss_pred -----cCCCeEEEeCccccccCCCCCcCEEEE----cCCCChHHhHHHHHHHHhccccceEEEEEEecccchHH------
Confidence 013788899998887766688999988 55666666666676666654 5555542 2211110
Q ss_pred ccCCCHHHHHHHHHhCCCE
Q psy3185 275 SIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF~ 293 (298)
.+.-..+.+...+...||.
T Consensus 315 ~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 315 EVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 1111245566666777764
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00021 Score=70.61 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCCCeEEEecccCcHHHHHHHHc---------------CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR---------------GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~---------------G~~v~g~D~S~~Ml~~a~~ 159 (298)
..+.+|+||.||+|.+....++. -..+.|+|+.+.|...|+.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m 272 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM 272 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence 34569999999999998776542 2458999999999887753
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00042 Score=63.05 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=86.7
Q ss_pred HHHHHHHhhhccCC----hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-------CCeEEEe
Q psy3185 79 TTLKQFVRDWSEEG----SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-------GYVCQGN 147 (298)
Q Consensus 79 ~~l~~~~RdWs~~g----~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-------G~~v~g~ 147 (298)
+.++.+-+||-... ..+|-.....+++.+...- .+.+||++|+..|.-+..+|.. +-.|+++
T Consensus 69 ~~~r~~g~~~~~~~~tmv~~~r~~~L~~l~~~v~~~~-------~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~ 141 (282)
T 2wk1_A 69 EEVRNEGRDWPANAHTMIGIKRLENIRQCVEDVIGNN-------VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVA 141 (282)
T ss_dssp HHHHHTTCSCBSSCSCSSHHHHHHHHHHHHHHHHHTT-------CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred HHHHhccccCCcccccccCHHHHHHHHHHHHHHHhcC-------CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEE
Confidence 34777788886543 4677665555666655422 2469999999999988887653 4579999
Q ss_pred eCCHHH--------------------------HHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 148 EFSLFM--------------------------LFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 148 D~S~~M--------------------------l~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
|....+ +..++..+.+ . .
T Consensus 142 DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~----------------------------~--------g 185 (282)
T 2wk1_A 142 DSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN----------------------------Y--------D 185 (282)
T ss_dssp ECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH----------------------------T--------T
T ss_pred ECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH----------------------------c--------C
Confidence 964322 2222221110 0 0
Q ss_pred CCCCCCeeEEeccccccccC--CCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 202 YNDDCDFSMAAGDFLQVYVH--PNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~--~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+. ..++.++.|||.+..+. .++||.|. || ..+....+++.+...|+|||++|.
T Consensus 186 l~-~~~I~li~Gda~etL~~~~~~~~d~vf----IDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 186 LL-DEQVRFLPGWFKDTLPTAPIDTLAVLR----MDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp CC-STTEEEEESCHHHHSTTCCCCCEEEEE----ECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC-cCceEEEEeCHHHHHhhCCCCCEEEEE----EcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 10 14789999999876432 35787764 45 334567899999999999999883
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00078 Score=61.07 Aligned_cols=46 Identities=9% Similarity=-0.094 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFM 153 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~M 153 (298)
+++..++. .. .++.+|||+|||.|..+...+++ |. .|.|+|++..|
T Consensus 79 L~ei~eK~-~L----k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~ 126 (282)
T 3gcz_A 79 LRWMEERG-YV----KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG 126 (282)
T ss_dssp HHHHHHTT-SC----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred HHHHHHhc-CC----CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence 55555554 22 24669999999999999988854 54 48999998764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=59.20 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=59.2
Q ss_pred CCCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+++.+|||+||+-|.-+...+++ | -.|.|..+...- +
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~---------~-------------------------------- 110 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG---------H-------------------------------- 110 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT---------S--------------------------------
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc---------c--------------------------------
Confidence 45789999999999999988876 2 234454333210 0
Q ss_pred CCCCCC-CCCCCC-eeEEec-cccccccCCCceeEEEecc-------cccCcchHHHHHHHHHHhccCCe-EEE
Q psy3185 196 DINTSD-YNDDCD-FSMAAG-DFLQVYVHPNKWDCVATCF-------FIDCANNIVSFIETIFNILKPGG-IWI 258 (298)
Q Consensus 196 d~~~~~-~~~~~~-~~~~~g-Df~~~~~~~~~fD~V~t~f-------fidta~n~~~yl~~I~~~LkpGG-~~I 258 (298)
+.|.. .+.+.+ +.+..| ||+++ +...+|+|+|=. .+|++..+. .|+-..+.||||| .|+
T Consensus 111 -~~P~~~~~~Gv~~i~~~~G~Df~~~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 111 -EEPMLMQSYGWNIVTMKSGVDVFYK--PSEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp -CCCCCCCSTTGGGEEEECSCCGGGS--CCCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEE
T ss_pred -cCCCcccCCCceEEEeeccCCccCC--CCCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEE
Confidence 01100 001112 234557 99885 346899998733 455554444 6766778999999 776
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0013 Score=58.54 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
+++.+.+.+. .++..||||.||+|..+.+.++.|..+.|+|+++.++..++..+
T Consensus 201 l~~~~i~~~~-----~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~ 254 (260)
T 1g60_A 201 LIERIIRASS-----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVL 254 (260)
T ss_dssp HHHHHHHHHC-----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 4555544432 24679999999999999999999999999999999999887744
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0036 Score=58.75 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=72.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||..||.|.=+..||..+. .|+++|.|..-+...+..+.+... ..
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~----------------------------~~ 199 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVP----------------------------EE 199 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSC----------------------------TT
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhh----------------------------hh
Confidence 577999999999999999999875 599999999987766654443110 00
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEe-----c---cccc---------Ccch-------HHHHHHHHHHhc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT-----C---FFID---------CANN-------IVSFIETIFNIL 251 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t-----~---ffid---------ta~n-------~~~yl~~I~~~L 251 (298)
+....++.+...|...+.. ..++||.|+. . -.+. +..+ ..+.|+...++|
T Consensus 200 -----~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~l 274 (359)
T 4fzv_A 200 -----IRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLAT 274 (359)
T ss_dssp -----TTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTE
T ss_pred -----hccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 0012467788888877643 3578998752 2 1111 1111 135778888999
Q ss_pred cCCeEEE
Q psy3185 252 KPGGIWI 258 (298)
Q Consensus 252 kpGG~~I 258 (298)
||||++|
T Consensus 275 kpGG~LV 281 (359)
T 4fzv_A 275 KPGGHVV 281 (359)
T ss_dssp EEEEEEE
T ss_pred CCCcEEE
Confidence 9999987
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0098 Score=55.20 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=35.4
Q ss_pred CCeEEEecccCcHHHHHHHHcC--Ce-EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~-v~g~D~S~~Ml~~a~~ 159 (298)
+.+|||+-||.|.++..+.+.| ++ |.++|++...+...+.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~ 44 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKY 44 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHH
Confidence 4689999999999999999999 54 8999999998887665
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0077 Score=54.93 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~M 153 (298)
++.+|||+|||.|..+..++++ |. .|.|+|++..|
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~ 117 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEG 117 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccc
Confidence 5789999999999999999975 54 58899998643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.73 E-value=0.023 Score=52.46 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=36.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.+.+|||+.||.|.++..+.+.|++ |.++|++...+...+.
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~ 51 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEM 51 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHH
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHH
Confidence 3579999999999999999999998 7799999998776654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.011 Score=54.31 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=50.9
Q ss_pred CeeEEecccccccc--CCCceeEEEec-ccccCcchH----HHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCC
Q psy3185 207 DFSMAAGDFLQVYV--HPNKWDCVATC-FFIDCANNI----VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPS 279 (298)
Q Consensus 207 ~~~~~~gDf~~~~~--~~~~fD~V~t~-ffidta~n~----~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls 279 (298)
.+.+..||..+... +..++|+|.-= |. .+.|+ .++++.|+++++|||+++. |-.
T Consensus 167 ~L~l~~GDa~~~l~~l~~~~~Da~flDgFs--P~kNPeLWs~e~f~~l~~~~~pgg~laT-----Yta------------ 227 (308)
T 3vyw_A 167 SLKVLLGDARKRIKEVENFKADAVFHDAFS--PYKNPELWTLDFLSLIKERIDEKGYWVS-----YSS------------ 227 (308)
T ss_dssp EEEEEESCHHHHGGGCCSCCEEEEEECCSC--TTTSGGGGSHHHHHHHHTTEEEEEEEEE-----SCC------------
T ss_pred EEEEEechHHHHHhhhcccceeEEEeCCCC--cccCcccCCHHHHHHHHHHhCCCcEEEE-----EeC------------
Confidence 56788999877654 23478887532 22 33333 4799999999999999984 322
Q ss_pred HHHHHHHHHhCCCEEEE
Q psy3185 280 YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 280 ~eEl~~~~~~~GF~i~~ 296 (298)
.-.+++.+.++||++.+
T Consensus 228 ag~VRR~L~~aGF~V~k 244 (308)
T 3vyw_A 228 SLSVRKSLLTLGFKVGS 244 (308)
T ss_dssp CHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHCCCEEEe
Confidence 35688889999999875
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0066 Score=55.47 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=33.3
Q ss_pred EEeccccccccCCCceeEEEeccc------ccC----cchHHH-HHHHHHHhccCCeEEEE
Q psy3185 210 MAAGDFLQVYVHPNKWDCVATCFF------IDC----ANNIVS-FIETIFNILKPGGIWIN 259 (298)
Q Consensus 210 ~~~gDf~~~~~~~~~fD~V~t~ff------idt----a~n~~~-yl~~I~~~LkpGG~~In 259 (298)
++.||+.++.. .++||+|+|=+. .|. ...+.+ .++-+.+.|||||.++.
T Consensus 156 ~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV 215 (344)
T 3r24_A 156 TLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 215 (344)
T ss_dssp EEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 48999877654 588999987432 232 223444 45556679999999973
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.032 Score=52.52 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=34.5
Q ss_pred CeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.+|||+-||.|.++..+.+.|++ |.|+|++.......+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~ 42 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAI 42 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHH
Confidence 68999999999999999999998 6699999998766553
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0067 Score=50.96 Aligned_cols=39 Identities=23% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ |.|+.+..+++ .|++|.+++.+...+..+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~ 79 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML 79 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4679999994 77888888776 599999999998876544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0077 Score=56.14 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.4
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+|. |.++..+|+. |+ .|.++|.|..-+..++.
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 225 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE 225 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 467999999976 8889999875 88 79999999987776654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0071 Score=55.46 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=35.6
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |.+|.++|.|..-+..++.
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 3577999999985 9999999985 9999999999988776654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.048 Score=50.50 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
...|+.+|||+...++.|... +..+.-+|+ +.++..-+.++........ .+ .. .. .-+..
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~-~l----~~-------~~-----~~~~~ 159 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRI-SL----GL-------SK-----EDTAK 159 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHH-HH----TC-------CS-----SCCCC
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhh-hc----cc-------cc-----ccccc
Confidence 468999999999999999875 456778888 6666655555443211000 00 00 00 00000
Q ss_pred CCCCCCCCCCeeEEecccccccc---------CCCceeEEEecccc--cCcchHHHHHHHHHHhccCCeEEEEecccc--
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV---------HPNKWDCVATCFFI--DCANNIVSFIETIFNILKPGGIWINLGPLL-- 264 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~---------~~~~fD~V~t~ffi--dta~n~~~yl~~I~~~LkpGG~~In~gPl~-- 264 (298)
....+ ...+..++.+|+.+..- +.+...++++--.+ =+.+.....|+.|.+.. |||.+|++.++.
T Consensus 160 ~~~~~-~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~ 237 (334)
T 1rjd_A 160 SPFLI-DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS 237 (334)
T ss_dssp TTEEE-ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC
T ss_pred ccccc-CCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCC
Confidence 00000 12478889899876411 12333444432211 24556778888888877 889888653321
Q ss_pred -----------ccccC-C-CCCCcc--CCCHHHHHHHHHhCCCE
Q psy3185 265 -----------YHYSN-M-LNEDSI--EPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 265 -----------y~~~~-~-~~~~~~--~ls~eEl~~~~~~~GF~ 293 (298)
+++.. . ..-.++ -.+.++..+.+.+.||.
T Consensus 238 ~~~~~fg~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 238 QPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp STTCCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred CCcchHHHHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 11111 0 001222 25899999999999997
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.01 Score=55.06 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=35.0
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 3567999999986 8899999975 88 69999999988776654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.027 Score=49.90 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+||+.|..+...+.+ |. .|.|+|.-..= + ..|.
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~g---------h-----------------------------e~P~ 119 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPG---------H-----------------------------EEPV 119 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTT---------S-----------------------------CCCC
T ss_pred CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCC---------c-----------------------------cCcc
Confidence 5679999999999999977765 65 49999987530 1 0111
Q ss_pred CCCCCCCCCCCeeEEec-cccccccCCCceeEEEecc-------cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCDFSMAAG-DFLQVYVHPNKWDCVATCF-------FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~g-Df~~~~~~~~~fD~V~t~f-------fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+.. ++. -..+.|..| |+..+. +..+|.|+|-. .+|.+.. ...|+-+.+.|++ |.|+
T Consensus 120 ~~~-s~g-wn~v~fk~gvDv~~~~--~~~~DtllcDIgeSs~~~~vE~~Rt-lrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 120 PMS-TYG-WNIVKLMSGKDVFYLP--PEKCDTLLCDIGESSPSPTVEESRT-IRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp CCC-CTT-TTSEEEECSCCGGGCC--CCCCSEEEECCCCCCSCHHHHHHHH-HHHHHHHGGGCSS-CEEE
T ss_pred hhh-hcC-cCceEEEeccceeecC--CccccEEEEecCCCCCChhhhhhHH-HHHHHHHHHhccc-CCEE
Confidence 111 111 147889999 986554 36799887633 2222221 2367777888999 6665
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.023 Score=52.22 Aligned_cols=42 Identities=19% Similarity=0.043 Sum_probs=34.7
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+|. |.++..+|+. |.+|.+++.|..-+..++.
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS 218 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence 3578999999986 8899999875 9999999999887766543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.021 Score=53.57 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|||. |.++..+|+. |. .|.++|.|...+..++
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3577999999986 9999999985 98 8999999998877654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.016 Score=53.40 Aligned_cols=42 Identities=14% Similarity=-0.059 Sum_probs=34.8
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+|. |.++..+|+. |. .|.++|.+..-+..++.
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3577999999986 8899999986 88 79999999987776654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.12 Score=47.65 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=35.4
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCC--e-E-EEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGY--V-C-QGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~--~-v-~g~D~S~~Ml~~a~~ 159 (298)
+...+++|+-||.|.+..-+.+.|+ + | .|+|+++......+.
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~ 53 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSK 53 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHH
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHH
Confidence 3467999999999999999999995 6 5 699999998776554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.064 Score=48.93 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=60.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+||++|..+...+.+ |.. |.|+|.-..= + .+ |.
T Consensus 94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~---------h-e~----------------------------P~ 135 (321)
T 3lkz_A 94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPG---------H-EE----------------------------PQ 135 (321)
T ss_dssp CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTT---------S-CC----------------------------CC
T ss_pred CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCC---------c-cC----------------------------cc
Confidence 4669999999999999977765 654 9999987640 0 00 11
Q ss_pred CCCCCCCCCCCeeEEec-cccccccCCCceeEEEecccccCcchH-------HHHHHHHHHhccCC-eEEEE
Q psy3185 197 INTSDYNDDCDFSMAAG-DFLQVYVHPNKWDCVATCFFIDCANNI-------VSFIETIFNILKPG-GIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~g-Df~~~~~~~~~fD~V~t~ffidta~n~-------~~yl~~I~~~LkpG-G~~In 259 (298)
+.. .+.. ..+.+..+ |+..+.+ ..+|.|++=.- .+.++. ...|+-+.+.|++| |-|+.
T Consensus 136 ~~~-ql~w-~lV~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 136 LVQ-SYGW-NIVTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCC-BTTG-GGEEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhh-hcCC-cceEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 000 0111 23666777 7766543 56888776433 333321 23666667889988 88763
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.018 Score=53.69 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+|. |.++..+|+. |..|.+++.|..-+..++.
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 577999999984 8899999874 9999999999987776654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.021 Score=53.34 Aligned_cols=40 Identities=13% Similarity=-0.067 Sum_probs=34.6
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~ 159 (298)
+..||++|.|+|.|+..|+.+ +..|+++|....++..-+.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~ 100 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNA 100 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHH
Confidence 578999999999999999986 5689999999998765443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.019 Score=52.44 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
.++.+||+.|| |.|..+..+|+. |++|.+++-|..-+..+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 190 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL 190 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35779999998 789999998864 99999999998766544
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.023 Score=51.78 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=33.6
Q ss_pred CCCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|| |.|..+..+++ .|++|.++|.|...+..++
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~ 187 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 187 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35679999998 88988888776 5999999999988776553
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.039 Score=51.33 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=39.4
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHH
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFAS 157 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a 157 (298)
++++.+.+.. .++..++|..||.|..+..|+++ | ..|+|+|.++.++..+
T Consensus 46 l~Evl~~L~i----~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A 98 (347)
T 3tka_A 46 LDEAVNGLNI----RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA 98 (347)
T ss_dssp THHHHHHTCC----CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHhhCC----CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 3444444432 35789999999999999999987 4 4799999999999876
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.03 Score=51.49 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=34.0
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|||. |.++..+|+ .|+.|.++|.|..-+..++.
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 467999999985 888888887 49999999999987766553
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.025 Score=51.18 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.||| .|.++..+|+. |.+|.+++ |..-+..++.
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~ 183 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK 183 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence 457899999997 58999999976 99999999 8876665544
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.018 Score=53.19 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=33.9
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|||. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 467999999985 8899999874 88 89999999987666543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.089 Score=49.40 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=34.6
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+|. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4577999999875 8888888875 88 89999999987776654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.03 Score=56.47 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=50.9
Q ss_pred CCeeEEeccccccccC-----CCceeEEEecccccCc-c--hH----HHHHHHHHHhccCCeEEEEeccccccccCCCCC
Q psy3185 206 CDFSMAAGDFLQVYVH-----PNKWDCVATCFFIDCA-N--NI----VSFIETIFNILKPGGIWINLGPLLYHYSNMLNE 273 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~~-----~~~fD~V~t~ffidta-~--n~----~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~ 273 (298)
..+.+..||..+.... .+.+|++ |+|-. + |. .+++..|.++++|||.+..++ .
T Consensus 148 ~~l~l~~gd~~~~l~~~~~~~~~~~da~----flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~-----~------ 212 (689)
T 3pvc_A 148 ITLDLWFGDVNTLLPTLDDSLNNQVDAW----FLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT-----A------ 212 (689)
T ss_dssp EEEEEEESCHHHHGGGCCGGGTTCEEEE----EECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-----C------
T ss_pred EEEEEEccCHHHHHhhcccccCCceeEE----EECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-----C------
Confidence 4688999999876542 3678876 45522 1 22 679999999999999886421 1
Q ss_pred CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+++.+.++||.+.+
T Consensus 213 ------~~~vr~~l~~aGf~~~~ 229 (689)
T 3pvc_A 213 ------AGFVRRGLQQAGFNVTK 229 (689)
T ss_dssp ------CHHHHHHHHHTTCEEEE
T ss_pred ------cHHHHHHHHhCCeEEEe
Confidence 25789999999999865
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.04 Score=50.82 Aligned_cols=41 Identities=20% Similarity=0.107 Sum_probs=34.7
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+|. |.++..+|+. |.. |.++|.|..-+..++.
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 222 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE 222 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 567999999976 8899999975 887 9999999988777665
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.021 Score=51.69 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCeeEEecccccccc--CCCceeEEEec--ccccC------------------cchHHHHHHHHHHhccCCeEE-EEecc
Q psy3185 206 CDFSMAAGDFLQVYV--HPNKWDCVATC--FFIDC------------------ANNIVSFIETIFNILKPGGIW-INLGP 262 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~--~~~~fD~V~t~--ffidt------------------a~n~~~yl~~I~~~LkpGG~~-In~gP 262 (298)
....+..||..++.. ++++||+|+|. |+... ...+...++++.++|||||.+ +++|.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 356799999988532 46899999986 44211 011345678899999999976 45554
Q ss_pred ccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 263 LLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 263 l~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
....... .+...+..-.+++..++++.||.+..
T Consensus 100 ~~~~~~~-~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 100 VAVARRR-FGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEEECC-----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred Ccccccc-CCcccccccHHHHHHHHHHcCCeeec
Confidence 2111000 00000111246788899999998754
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.19 Score=45.63 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=33.7
Q ss_pred CeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.+|||+=||.|.+..-|-+.|++ |.++|++.......+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~ 40 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYES 40 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHH
Confidence 47999999999999999999998 6699999988776553
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.058 Score=48.79 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=32.4
Q ss_pred eEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+||+.|| |.|.++..+|+. |.+|.+++-|..-+..++.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~ 189 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS 189 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 4999997 789999999975 9999999999887766654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.29 E-value=0.01 Score=53.48 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ |.|.++..+|+. |.+|.+++-|..-+..++
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 167 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL 167 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4679999998 789999998874 899999999887665554
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.021 Score=52.23 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=34.7
Q ss_pred CCCCeEEEeccc--CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG--LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG--~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.||| .|.++..+|+. |.+|.+++.|..-+..++.
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 357799999986 89999999875 9999999999887666554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.033 Score=50.90 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|| |.|.++..+|+ .|+.|.+++-|..-+..++
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~ 197 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK 197 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35679999997 78999999887 5999999999988766543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.025 Score=51.86 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| .|.++..+|+. |++|.+++.|..-+..++
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 205 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 205 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46799999986 68888888864 999999999988776554
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.028 Score=51.29 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=34.2
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+ |.|.++..+|+. |.+|.+++-+..-+..++.
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 191 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE 191 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35779999994 789999998875 9999999999887765543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.22 Score=45.98 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=34.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCC--e-EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY--V-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~--~-v~g~D~S~~Ml~~a~~ 159 (298)
..+++|+-||.|.+...+.+.|+ + |.|+|+++......+.
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~ 45 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKH 45 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHH
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHH
Confidence 46899999999999999999996 5 7799999998766553
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.039 Score=51.60 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~ 228 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 228 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence 3567999999976 8999999985 88 69999999988776654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.024 Score=51.95 Aligned_cols=40 Identities=15% Similarity=-0.008 Sum_probs=33.0
Q ss_pred CCeEEEecccC-cHHHHHHHH-c--CCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGL-GRLAFEIAR-R--GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~-Grla~ela~-~--G~~v~g~D~S~~Ml~~a~~ 159 (298)
+.+||+.|+|. |.++..+|+ . |..|.+++.|..-+..++.
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE 214 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence 67999999974 888888886 4 8999999999987766554
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.12 Score=47.66 Aligned_cols=42 Identities=19% Similarity=0.091 Sum_probs=34.6
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |..|.+++.|..-+..++.
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence 3577999999886 8888888875 9999999999887766554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.051 Score=50.29 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.| .|.|.++..+|+. |+.|.+++-|..-+..++.
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~ 206 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 206 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 567999999 5789999999874 9999999999876665543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.032 Score=51.88 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.||| .|.++..+|+. |. .|.++|.|..-+..++.
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~ 236 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK 236 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 357799999997 48899999876 98 79999999987776553
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.033 Score=50.63 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.| .|.|.++..+|+. |.+|.+++-|..-+..++.
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 183 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA 183 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3577999999 4789999998875 9999999999987766553
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.59 Score=45.37 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHhhCCCCC--CCCCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 104 ISEILARFPPET--INPKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 104 ~~~l~~~~p~~~--~~~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
++.|...+|... ......+++|+=||.|.++.-+.+.|++ |.++|+++......+.
T Consensus 70 ~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~ 128 (482)
T 3me5_A 70 FAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKA 128 (482)
T ss_dssp HHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHH
Confidence 355666655321 1234578999999999999999999998 7899999987766543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.033 Score=51.08 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|| |.|.++..+|+. |+.|.+++-|..-+..++.
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 202 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS 202 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 35779999997 789999999875 9999999999887765554
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.034 Score=50.97 Aligned_cols=42 Identities=24% Similarity=0.122 Sum_probs=34.8
Q ss_pred CCCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+ |.|.++..+++ .|+.|.+++-|..-+..++.
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~ 209 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA 209 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 35679999998 78999999887 59999999999887766543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0065 Score=69.84 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=25.6
Q ss_pred CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc---cc----cccCCCC-CCccCCCHHHHHHHHHhCCCE
Q psy3185 222 PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL---LY----HYSNMLN-EDSIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 222 ~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl---~y----~~~~~~~-~~~~~ls~eEl~~~~~~~GF~ 293 (298)
..+||+|+.+..++..+++...+..++++|||||+++-..+. .. .+-.... ...-.++.+++.+++...||.
T Consensus 1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A 1309 LGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp ---CCEEEEECC--------------------CCEEEEEEC--------------------------CTTTTSSTTTTEE
T ss_pred CCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCc
Confidence 457999999888988889999999999999999998753221 00 0000000 001225666677778888887
Q ss_pred EE
Q psy3185 294 YE 295 (298)
Q Consensus 294 i~ 295 (298)
.+
T Consensus 1389 ~~ 1390 (2512)
T 2vz8_A 1389 LV 1390 (2512)
T ss_dssp EE
T ss_pred ee
Confidence 65
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.036 Score=50.87 Aligned_cols=40 Identities=28% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ |.|..+..+++ .|++|.+++.|...+..++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~ 211 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR 211 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH
Confidence 5679999999 78998888886 5999999999988765544
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.071 Score=49.36 Aligned_cols=42 Identities=17% Similarity=-0.079 Sum_probs=34.0
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|||. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 3567999999974 8888899875 88 79999999887766553
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.056 Score=49.57 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=39.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
++..||||=||+|..+.+..+.|-...|+|+++.+...++..+.
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGS
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999988876443
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.069 Score=49.47 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=34.0
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+|. |.++..+|+. |. .|.++|.|+.-+..++.
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 3567999999875 8888888875 88 79999999987776653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.029 Score=51.83 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=33.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| .|.++..+|+. |..|.+++.|..-+..++.
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 221 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 56799999986 48888888874 9999999999887766554
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.056 Score=49.19 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ |.|..+..+++ .|+.|.+++-+..-+..++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~ 187 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR 187 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5679999995 78998888876 5999999999987666554
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.077 Score=48.91 Aligned_cols=40 Identities=30% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ |.|..+..+++ .|+.|.+++-|..-+..++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 212 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL 212 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 5679999997 78888888876 5999999999988666543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.067 Score=49.06 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=33.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| .|.++..+|+. |+ .|++++-|..-+..++.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~ 210 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK 210 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 56799999997 48888888874 98 89999999887665543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.089 Score=48.63 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=34.2
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+|. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~ 233 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 233 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3567999999875 8888888875 88 79999999987776654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.066 Score=49.06 Aligned_cols=41 Identities=32% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCeEEEeccc--CcHHHHHHHH-c-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG--LGRLAFEIAR-R-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG--~Grla~ela~-~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| .|..+..+++ . |++|.++|.|...+..++.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 214 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 56799999998 8888888776 4 9999999999987766543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.27 Score=45.79 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=68.4
Q ss_pred CCeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|-++|+|. | .++..|++.|++|++.|.++.-+..... . . +
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~---~--g-----~------------------------- 66 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER---E--G-----I------------------------- 66 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT---T--T-----C-------------------------
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH---C--C-----C-------------------------
Confidence 46899999874 2 2566677789999999999875443221 0 0 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
. ...+..++.......|+|++|---+ .+.+.++.+...|+||-++|+.+-..+..
T Consensus 67 -----------~-~~~s~~e~~~~a~~~DvVi~~vp~~---~v~~vl~~l~~~l~~g~iiId~st~~~~~---------- 121 (358)
T 4e21_A 67 -----------A-GARSIEEFCAKLVKPRVVWLMVPAA---VVDSMLQRMTPLLAANDIVIDGGNSHYQD---------- 121 (358)
T ss_dssp -----------B-CCSSHHHHHHHSCSSCEEEECSCGG---GHHHHHHHHGGGCCTTCEEEECSSCCHHH----------
T ss_pred -----------E-EeCCHHHHHhcCCCCCEEEEeCCHH---HHHHHHHHHHhhCCCCCEEEeCCCCChHH----------
Confidence 0 0011222211123458888775332 56678889999999999999765432221
Q ss_pred CCHHHHHHHHHhCCCEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~ 295 (298)
..++.+.+.+.|...+
T Consensus 122 --~~~~~~~l~~~g~~~v 137 (358)
T 4e21_A 122 --DIRRADQMRAQGITYV 137 (358)
T ss_dssp --HHHHHHHHHTTTCEEE
T ss_pred --HHHHHHHHHHCCCEEE
Confidence 3445555666666544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.49 Score=37.27 Aligned_cols=38 Identities=18% Similarity=-0.015 Sum_probs=28.0
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
..+|+++|||. |+ ++..|.+.|+.|+++|.++.-+..+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~ 46 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL 46 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 46899999864 32 4445556799999999999866543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.062 Score=49.46 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.| .|.|.++..+|+. |+.|.+++.|..-+..++.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 210 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER 210 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 3577999995 4679999998875 9999999999987766654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.21 E-value=0.1 Score=48.35 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=33.8
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|||. |.++..+|+. |. .|.++|.|..-+..++.
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3567999999875 8888888875 88 79999999887766543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.051 Score=49.27 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=33.4
Q ss_pred CCCeEEEec--ccCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPG--AGLGRLAFEIAR-RGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.| .|.|..+..+++ .|++|.+++-+..-+..++.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~ 183 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK 183 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 567999999 578888888876 49999999999887665543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.14 Score=48.65 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|| |.|.++..+|+. |..|.+++-|..-+..++.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~ 263 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA 263 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 45789999997 678999998875 9999999999887766543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.095 Score=48.55 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=33.7
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.||| .|.++..+|+. |. .|.++|.|..-+..++.
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 238 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 238 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 356799999987 48888888875 88 79999999887766543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.1 Score=47.86 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=30.5
Q ss_pred CeEEEecc--cCcHHHHHHHH-cCC-eEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGA--GLGRLAFEIAR-RGY-VCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGc--G~Grla~ela~-~G~-~v~g~D~S~~Ml~~a 157 (298)
.+||+.|| |.|..+..+++ .|+ .|.+++.+..-+..+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~ 202 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILL 202 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 79999997 78888888876 599 999999998755544
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.1 Score=48.01 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=31.2
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| .|.++..+|+. |..|.+++-|..-+..+
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~ 220 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEA 220 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 46799999987 47788888875 99999999998755543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.14 Score=47.30 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+|. |.++..+|+. |+.|.+++-|..-+..+
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~ 227 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEA 227 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467999999864 7777888764 99999999998765543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.094 Score=50.11 Aligned_cols=42 Identities=26% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|| |.|.++..+|+. |..|.+++-|..=+..++.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~ 271 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA 271 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh
Confidence 45779999997 689999999975 9999999988887666544
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.052 Score=50.88 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.3
Q ss_pred CCCeEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+|+++|+ |+.+..+| ..|.+|++.|.+..-+..+.
T Consensus 167 ~g~~V~ViG~--G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~ 208 (377)
T 2vhw_A 167 EPADVVVIGA--GTAGYNAARIANGMGATVTVLDINIDKLRQLD 208 (377)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 4679999998 45444443 34899999999987655443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.081 Score=49.24 Aligned_cols=41 Identities=27% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-G-YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.||| .|.++..+|+. | ..|.+++.|..-+..++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 238 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 238 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence 56799999976 58888888875 8 599999999987766543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.11 Score=47.52 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=34.8
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc--CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR--GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~--G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|+|. |.++..+|+. |..|.++|.|..-+..++.
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~ 214 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE 214 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 3577999999986 8899999975 6789999999987776654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.076 Score=49.52 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=26.5
Q ss_pred CCCeEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+|+++|+| .++..++ ..|++|++.|.+..-+..+
T Consensus 165 ~~~~V~ViGaG--~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~ 205 (369)
T 2eez_A 165 APASVVILGGG--TVGTNAAKIALGMGAQVTILDVNHKRLQYL 205 (369)
T ss_dssp CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 35799999984 4444433 4599999999998755443
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.17 Score=46.57 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=30.8
Q ss_pred CeEEEeccc-CcHHH-HHHH-Hc-CCe-EEEeeCCHH---HHHHHHH
Q psy3185 121 VNILVPGAG-LGRLA-FEIA-RR-GYV-CQGNEFSLF---MLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG-~Grla-~ela-~~-G~~-v~g~D~S~~---Ml~~a~~ 159 (298)
.+||+.|+| .|.++ ..+| +. |.. |.+++-|.. -+..++.
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~ 220 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE 220 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH
Confidence 799999986 48888 8888 64 887 999999876 5655543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.071 Score=49.47 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
.++.+||+.| .|.|.++..+|+. |..|.+++ |..-+..+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~ 223 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV 223 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH
Confidence 3577999999 4679999999875 89999998 65544433
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.23 Score=45.73 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCH---HHHHHHH
Q psy3185 120 DVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSL---FMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~---~Ml~~a~ 158 (298)
+.+||+.|+| .|.++..+|+. |+.|.+++-|. .-+..++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~ 224 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE 224 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH
Confidence 6799999985 37777777764 99999999987 5554443
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.13 Score=47.21 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCCCeEEEecc--cCcHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|+ |.|..+..+++ .|+.|.+++.|..-+..++
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 204 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE 204 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 35679999994 78888888876 4999999999998776654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.058 Score=49.39 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+|. |.++..+|+. |. .|++++.|..-+.
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~ 203 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLA 203 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 467999999864 8888888874 98 8999999986443
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.43 Score=47.77 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=81.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc------------C--CeEEEeeC---CHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR------------G--YVCQGNEF---SLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~------------G--~~v~g~D~---S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
+..+||+.|-|||..+....+. + -+++++|. +...+..+- +.-. .+-++......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~---~~~~-----~~~~~~~~l~~ 137 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAH---QHWP-----ELAPWAEQLQA 137 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHH---TTCG-----GGHHHHHHHHH
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHH---HhCh-----hhHHHHHHHHH
Confidence 4579999999999976655332 2 24889999 877776332 1100 00011100000
Q ss_pred cccccccccccccCCCCCCCCC-CCCCeeEEeccccccccC-----CCceeEEEec-ccccCcchH--HHHHHHHHHhcc
Q psy3185 182 NILTHHQTMAVTFPDINTSDYN-DDCDFSMAAGDFLQVYVH-----PNKWDCVATC-FFIDCANNI--VSFIETIFNILK 252 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~-~~~~~~~~~gDf~~~~~~-----~~~fD~V~t~-ffidta~n~--~~yl~~I~~~Lk 252 (298)
+ . +..+|.+.-..+. ....+.+..||..+.... .+.||+|+-= |.=...+++ .+++..|++++|
T Consensus 138 ~------~-~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~ 210 (676)
T 3ps9_A 138 Q------W-PMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR 210 (676)
T ss_dssp H------C-CCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEE
T ss_pred h------C-cccCCCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhC
Confidence 0 0 0001111000000 113577889998776542 3678887432 211111222 478999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|||.+... .. ...+++.+.++||.+.+
T Consensus 211 ~g~~~~t~-----~~------------~~~vr~~L~~aGf~v~~ 237 (676)
T 3ps9_A 211 PGGTLATF-----TS------------AGFVRRGLQDAGFTMQK 237 (676)
T ss_dssp EEEEEEES-----CC------------CHHHHHHHHHHTCEEEE
T ss_pred CCCEEEec-----cC------------cHHHHHHHHhCCeEEEe
Confidence 99998742 11 25788999999998865
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.089 Score=47.68 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=30.9
Q ss_pred eEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 122 NILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 122 ~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
+||+.|| |.|.++..+|+. |+.|.+++-|..-+..++
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~ 191 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR 191 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 7999997 789999999875 999999999876655544
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.69 Score=40.14 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=30.9
Q ss_pred CCCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+-|++ .|+ ++..|+++|++|..++-+.........
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHE 51 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHH
Confidence 45689999965 565 788889999999999888655444433
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.24 Score=45.27 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=54.6
Q ss_pred CCeeEEeccccccc--cCCCceeEEEec--ccccC------------cchHHHHHHHHHHhccCCeEEE-Eecccccccc
Q psy3185 206 CDFSMAAGDFLQVY--VHPNKWDCVATC--FFIDC------------ANNIVSFIETIFNILKPGGIWI-NLGPLLYHYS 268 (298)
Q Consensus 206 ~~~~~~~gDf~~~~--~~~~~fD~V~t~--ffidt------------a~n~~~yl~~I~~~LkpGG~~I-n~gPl~y~~~ 268 (298)
....+..||..+.. .+++++|+|+|. |.... ...+...++.++++|||||.++ +++.. |..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~-~~~- 90 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-YMK- 90 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-EET-
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE-ecC-
Confidence 35678899987643 246899999986 54321 1246778899999999999865 44431 100
Q ss_pred CCCCCCcc-CCCHHHHHHHHHhCCCEEEE
Q psy3185 269 NMLNEDSI-EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 ~~~~~~~~-~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.+.. ......+..+++..||.+..
T Consensus 91 ---g~~~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 91 ---GVPARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp ---TEEEECCHHHHHHHHHHHTTCCEEEE
T ss_pred ---CCcccccchHHHHHHHHHhCCCEEEE
Confidence 00001 12345677788899998753
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.44 Score=40.48 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=25.9
Q ss_pred CCCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
.+.+||+.|+ |.|+ ++..|+++|++|.+++-+..-+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~ 58 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG 58 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH
Confidence 4679999996 3443 4555667799999999887643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.18 Score=46.14 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|| |.|.++..+|+. |+.|.++ .|..-+..++.
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~ 192 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD 192 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH
Confidence 35779999994 679999999875 9999999 88876655543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.21 Score=45.18 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=31.0
Q ss_pred eEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+||+.|| |.|.++..+|+. |++|.+++-|..-+..++.
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~ 193 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ 193 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 7999997 789999999875 9999999998765555443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.19 Score=46.49 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|+ |.|.++..+|+. |+.|.++- |..-+..++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~ 205 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAK 205 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHH
Confidence 35779999999 489999999975 99988885 776555444
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.39 Score=43.38 Aligned_cols=134 Identities=15% Similarity=-0.006 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 76 KVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 76 ~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
|..|...-+.|=|.. ...--+...|+++.|... . +..+||.=+|+|.++.|..+.|-.++.+|.++.-+.
T Consensus 58 ktgE~~~GI~rl~~~--~~~~p~~l~~yf~~l~~~-n-------~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~ 127 (283)
T 2oo3_A 58 KTEEYKEGINPVWLD--RENLPSLFLEYISVIKQI-N-------LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYN 127 (283)
T ss_dssp -CCGGGGTHHHHHHT--GGGSCGGGHHHHHHHHHH-S-------SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHH
T ss_pred hcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHh-c-------CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHH
Confidence 344444445555652 011122345677877763 2 357899999999999999997777999999998665
Q ss_pred HHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc----cCCCceeEEEec
Q psy3185 156 ASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATC 231 (298)
Q Consensus 156 ~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~ 231 (298)
.-+. .. ....++.+..+|..... ++..+||+|+
T Consensus 128 ~L~~---Nl--------------------------------------~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVf-- 164 (283)
T 2oo3_A 128 FLLK---LP--------------------------------------HFNKKVYVNHTDGVSKLNALLPPPEKRGLIF-- 164 (283)
T ss_dssp HHTT---SC--------------------------------------CTTSCEEEECSCHHHHHHHHCSCTTSCEEEE--
T ss_pred HHHH---Hh--------------------------------------CcCCcEEEEeCcHHHHHHHhcCCCCCccEEE--
Confidence 4332 00 00135777888854321 2345799885
Q ss_pred ccccCc----chHHHHHHHHHH--hccCCeEEEEecccc
Q psy3185 232 FFIDCA----NNIVSFIETIFN--ILKPGGIWINLGPLL 264 (298)
Q Consensus 232 ffidta----~n~~~yl~~I~~--~LkpGG~~In~gPl~ 264 (298)
||.. ......++.|.+ .+.|+|+.+.==|++
T Consensus 165 --iDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~ 201 (283)
T 2oo3_A 165 --IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV 201 (283)
T ss_dssp --ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred --ECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence 5642 244555666655 455899887544543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.15 Score=46.67 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH---HHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL---FMLFASNFIL 161 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~---~Ml~~a~~~l 161 (298)
+++.|.+.+. .++..||||=||+|..+.+..+.|....|+|+++ .+...++..+
T Consensus 231 l~~~~i~~~~-----~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 231 VIERLVRALS-----HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp HHHHHHHHHS-----CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-----CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHH
Confidence 5555555443 2467999999999999999999999999999999 8888777644
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.98 Score=40.38 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
..+|.++|+|. +.++..|++.|++|++.|.++.-+..
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~ 45 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACAN 45 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 46899998875 23566677789999999999875543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.85 Score=41.38 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCeEEEecccC--cHHHHHHHHcCC--eEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGY--VCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~--~v~g~D~S~~Ml~~a~ 158 (298)
..+|.++|+|. |.++..|++.|+ +|++.|.++.-+..+.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~ 75 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV 75 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 36899999885 346677778899 9999999997665443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.078 Score=50.02 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=29.3
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+|+++|+|. |..+..+++ .|.+|++.|.++.-+..+.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 224 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR 224 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 467999999983 445555444 4999999999987665444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.93 Score=37.09 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCCeEEEecccC-cH-HHHHHHHc-CCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGL-GR-LAFEIARR-GYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~-Gr-la~ela~~-G~~v~g~D~S~~Ml~~ 156 (298)
.+.+|+++|||. |+ ++..|.+. |+.|+++|.++.-+..
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~ 78 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ 78 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence 356899998763 32 34445567 9999999999976543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.65 Score=41.39 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=30.4
Q ss_pred CCCeEEEecc----cCcH-HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA----GLGR-LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc----G~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+-|+ |.|+ ++..|++.|+.|..++-+..-.....
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~ 73 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVD 73 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 3568999997 5665 77888889999999999865444333
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.65 Score=38.80 Aligned_cols=32 Identities=28% Similarity=0.194 Sum_probs=23.0
Q ss_pred eEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHH
Q psy3185 122 NILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 122 ~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~M 153 (298)
+||+.|+ |+|+ ++..|+++|++|.+++-+..-
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK 36 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 6999996 2333 444556679999999988753
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.079 Score=50.17 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=28.9
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a 157 (298)
++.+|+++|+|. |..+..+++ .|..|++.|.+..-+..+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 367999999974 555555554 499999999998765544
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.06 E-value=1.1 Score=39.11 Aligned_cols=35 Identities=31% Similarity=0.235 Sum_probs=27.0
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|.++|||. +.++..|++.|++|++.|.++.-+..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~ 38 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEK 38 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 689999875 33556677789999999999876543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.4 Score=44.18 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR--GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.| .|.|.++..+|+. |..|.+++-+..-+..++.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~ 215 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS 215 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence 467899998 3569999999985 7899999999887666543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.52 Score=36.84 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=27.1
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
..+|++.|||. |+ ++..|++.|++|+++|.++.-+...
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~ 45 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL 45 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 35899999853 22 4445556799999999998865443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.09 Score=50.01 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+|+++|+|. |..+..+++ .|.+|++.|.++.-+..+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 230 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA 230 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 467999999983 555555544 4999999999987665544
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=2.5 Score=37.46 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=30.0
Q ss_pred CCCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+-|++ .|+ ++..|++.|+.|..++-+..-.....
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 74 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVE 74 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 35689999965 554 77788899999999998865444333
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=91.48 E-value=1.6 Score=39.37 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.6
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
..+|.++|+|. |. ++..|++.|++|++.|.++.-+.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~ 68 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAA 68 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHH
Confidence 46899999984 33 66677888999999999987443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.41 Score=43.13 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.| .|.|.++..+|+. |..|.+++ |..-+..++
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~ 193 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLK 193 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHH
Confidence 3578999997 4579999999875 99999987 444344443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.20 E-value=0.23 Score=46.12 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=27.9
Q ss_pred CCeEEEeccc-CcHHHHHHH-HcCCeEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGAG-LGRLAFEIA-RRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGcG-~Grla~ela-~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+.+||++|+| .|+.+..++ ..|.+|++.|-++.-+..+.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~ 207 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE 207 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 4799999985 344444444 45999999999987665544
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.12 Score=48.43 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a 157 (298)
++.+|+++|+|. |+.+..+++ .|..|++.|.+..-+..+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467999999974 444555554 489999999997655443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.42 Score=43.63 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=32.6
Q ss_pred CCCeEEEec-c-cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPG-A-GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpG-c-G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.| + |.|.++..+|+. |+.|.+++-+..-+..++.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 193 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK 193 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 467999994 4 568888888875 9999999999886666554
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.42 Score=43.35 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |.. +.++|.|..-+..++.
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~ 203 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS 203 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH
Confidence 3577999999974 6677777765 776 6899999987766654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=1 Score=43.87 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+|+++|+| .++..+|+ .|..|.++|.++.-+..+
T Consensus 273 ~GktV~IiG~G--~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A 313 (494)
T 3ce6_A 273 GGKKVLICGYG--DVGKGCAEAMKGQGARVSVTEIDPINALQA 313 (494)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CcCEEEEEccC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47799999985 44444433 489999999998765443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.98 Score=40.35 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=28.2
Q ss_pred CCeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
..+|-++|+|. | .++..|++.|++|++.|.++.-+.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~ 52 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMT 52 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 35899999885 3 366677788999999999987544
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.82 Score=41.39 Aligned_cols=41 Identities=20% Similarity=0.045 Sum_probs=30.9
Q ss_pred CCCeEEEecccCc-HHHHHHHH-c-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG-RLAFEIAR-R-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~G-rla~ela~-~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+|.+ .++..+|+ . |..|.++|.|..-+..++.
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~ 206 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK 206 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence 5779999999864 56666665 3 7889999999986665543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.64 E-value=4 Score=35.13 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=30.6
Q ss_pred CCCeEEEecc-c--CcH-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA-G--LGR-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc-G--~Gr-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|+ | .|+ ++..|+++|+.|..++-+..-+...
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 63 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET 63 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence 4568999997 5 565 7778889999999999998765443
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.60 E-value=2.7 Score=37.96 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.0
Q ss_pred CeEEEecccC-c-HHHHHHHHcC-CeEEEeeCCH
Q psy3185 121 VNILVPGAGL-G-RLAFEIARRG-YVCQGNEFSL 151 (298)
Q Consensus 121 ~~VLdpGcG~-G-rla~ela~~G-~~v~g~D~S~ 151 (298)
.+|-++|+|. | .++..|++.| ++|++.|.++
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 5899999884 3 3566677889 9999999997
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=1.2 Score=42.05 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=28.4
Q ss_pred CCeEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+.+|+++|+ ||++..+| ..|+.|+++|.++..+..++
T Consensus 4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~ 44 (413)
T 3l9w_A 4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLR 44 (413)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 568999987 55555554 46999999999999876554
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.32 E-value=2.1 Score=37.72 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=28.3
Q ss_pred CeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|.++|+|. | .++..|++.|++|+..|-++.-+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~ 41 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEA 41 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 5899999985 3 3566678889999999999875544
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=2.4 Score=36.99 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.5
Q ss_pred eEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|.++|||. |. ++..|++ |++|+..|.+..-+..
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~ 38 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALR 38 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHH
T ss_pred eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHH
Confidence 689999986 43 5667788 9999999998775443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.07 E-value=2.1 Score=37.74 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=28.2
Q ss_pred CeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|.++|||. | .++..|++.|++|.+.|.++.-+..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~ 43 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIAD 43 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 5899999985 3 3566677889999999999875543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.84 E-value=5.3 Score=35.41 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+||+-|++.| .++..|+++|+.|..++-+..-+...
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 71 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA 71 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3568999998754 36667778899999999998766543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.81 E-value=6.6 Score=33.38 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=29.9
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|++.| .++..|+++|++|..++-+..-+...
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAV 49 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 4568999997654 36667777899999999998766543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.74 E-value=2.8 Score=36.64 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=27.1
Q ss_pred eEEEecccC--cHHHHHHHHcCC--eEEEeeCCHHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGY--VCQGNEFSLFMLFAS 157 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~--~v~g~D~S~~Ml~~a 157 (298)
+|.++|+|. +.++..|++.|+ +|++.|.+..-+..+
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~ 42 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA 42 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence 789999875 335566677798 899999998765543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.91 Score=41.07 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=36.1
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeE---EEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVC---QGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v---~g~D~S~~Ml~~a~~ 159 (298)
+.+.+|||+=||.|.+...+.+.|+++ .++|++.......+.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~ 58 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMV 58 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHH
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHH
Confidence 457899999999999999999999975 899999987766543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.48 E-value=3.2 Score=35.93 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=24.3
Q ss_pred CCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~ 152 (298)
..+||+.|| |.++..|++ +|++|++++-+..
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChh
Confidence 358999995 777766654 5999999988764
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.26 E-value=3.8 Score=35.63 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=25.2
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S 150 (298)
++.+||+-|++.| + ++..|+++|++|..+|.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence 4568999998544 3 666778889999999886
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=89.19 E-value=2.8 Score=36.43 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=33.1
Q ss_pred CCCeEEEecc----cCcH-HHHHHHHcCCeEEEeeCCHHHHHHHHHH
Q psy3185 119 KDVNILVPGA----GLGR-LAFEIARRGYVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 119 ~~~~VLdpGc----G~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~~~ 160 (298)
++..+|+-|+ |.|+ +|..||+.|++|..++-+..-+......
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~ 51 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKL 51 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 4678999995 5666 6778899999999999998777655543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.91 E-value=4.1 Score=34.65 Aligned_cols=40 Identities=18% Similarity=0.032 Sum_probs=30.6
Q ss_pred CCCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.++.+||+-|++.| .++..|+++|+.|..++-+..-+...
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 54 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSL 54 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 45778999998654 26667778899999999998765543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.90 E-value=8.8 Score=32.42 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|++.| .++..|+++|++|.+++-+..-+...
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 45 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKF 45 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3568999997654 26667778899999999998766543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.62 E-value=3.7 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=22.5
Q ss_pred CCeEEEecccCcHHHHHHH----HcCCeEEEeeCC
Q psy3185 120 DVNILVPGAGLGRLAFEIA----RRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S 150 (298)
+.+|+++|+ |+.+..++ +.|+.|+.+|.+
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECC
Confidence 458999986 66666655 459999999997
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=5.3 Score=35.32 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHHHhhhccCChHHHhhhhH---------HHHH--HHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYE---------PIIS--EILARFPPETINPKDVNILVPGAGLGRLAFEIARR 140 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~---------~i~~--~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~ 140 (298)
.+-...++.|.+++++++... .|+...+. .++. +|-+... .-++.|++.||-.|.-+..+|..
T Consensus 17 ~~~~~~~~~l~~~~~~~~~~~-~e~l~~~~~~~~~~~l~~~l~~~~l~~~i~-----~vpG~ivE~GV~rG~S~~~~a~~ 90 (257)
T 3tos_A 17 PEETETTQRLTKLLTNSPIPT-EELVNNLPLFLRRHQMTDLLSMDALYRQVL-----DVPGVIMEFGVRFGRHLGTFAAL 90 (257)
T ss_dssp HHHHHHHHHHHHHHHTCCSCG-GGGGGCGGGGCCHHHHHHHHHHHHHHHHTT-----TSCSEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCh-HHHHHhHHhhhhHHHHHHHHHHHHHHHHhh-----CCCCeEEEEecccCHHHHHHHHH
Confidence 444567888999999998733 33332222 2222 3333322 12569999999999988887752
Q ss_pred -------C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccc--------ccCCCCCCCCC
Q psy3185 141 -------G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAV--------TFPDINTSDYN 203 (298)
Q Consensus 141 -------G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~--------~ipd~~~~~~~ 203 (298)
+ -.|.|.|-=..|-..... ...... -....++..-...+.++.+ .+|.+
T Consensus 91 ~~~l~~~~~~r~v~~fDTFeG~P~~~~~------D~~~~~--~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~------ 156 (257)
T 3tos_A 91 RGVYEPYNPLRRIVGFDTFTGFPDVNDV------DRVGPT--AYQGRFAVPGGYPAYLKEVLDAHECSDFFGHV------ 156 (257)
T ss_dssp HHHHCTTCTTCCEEEEECSSCCCSCCGG------GTTSTT--CSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTS------
T ss_pred HHHhcccCCCCEEEEEECCCCCCCCccc------cccccc--cccCcccccchhHHHHHHHHHHHhhhhhcCCC------
Confidence 2 459999843333211000 000000 0000111000000111110 12211
Q ss_pred CCCCeeEEecccccccc------CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 204 DDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 204 ~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
..++.++.|+|.+..+ +.+++|.|.-=. |.-.+-..|++.+...|+|||++|
T Consensus 157 -~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~--D~Y~~t~~~le~~~p~l~~GGvIv 214 (257)
T 3tos_A 157 -TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL--DLYEPTKAVLEAIRPYLTKGSIVA 214 (257)
T ss_dssp -CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC--CCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred -CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC--cccchHHHHHHHHHHHhCCCcEEE
Confidence 1589999999987642 234677664221 344566789999999999999998
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=88.48 E-value=7.7 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=28.2
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+-|++.| .++..|+++|++|..++-+..-+.
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 46 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERAR 46 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3568999997544 366677788999999999876544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=88.37 E-value=2.1 Score=37.81 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=26.9
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.+|.++|+|. +.++..|++.|++|++.|.++.-+.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~ 38 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAE 38 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHH
Confidence 4789999875 2356667778999999999987544
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.23 E-value=2.9 Score=39.94 Aligned_cols=40 Identities=25% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
-.+|.++|+|+ +.+|..+++.|++|++.|.+...+..++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~ 78 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKK 78 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 35799999997 44788888999999999999987766543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.16 E-value=2.8 Score=37.28 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFM 153 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~M 153 (298)
-.+.+|+++|+| +++..+|+ .|.+|++.|.+..-
T Consensus 153 l~g~~v~IiG~G--~iG~~~a~~l~~~G~~V~~~dr~~~~ 190 (293)
T 3d4o_A 153 IHGANVAVLGLG--RVGMSVARKFAALGAKVKVGARESDL 190 (293)
T ss_dssp STTCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 356799999975 55555444 48999999999864
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.07 E-value=6.7 Score=33.53 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=28.5
Q ss_pred CCCCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 118 PKDVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 118 ~~~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.++.+||+-|++ .|+ ++..|+++|+.|..++-+..-...
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 55 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDR 55 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHH
Confidence 457799999964 554 566777889999999888544333
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.00 E-value=8.1 Score=33.79 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+-|++.| .++..|++.|++|..++-+..-+.
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~ 67 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAAD 67 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3568999998655 267778888999999999887544
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=3.5 Score=39.64 Aligned_cols=37 Identities=30% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+.+|-++|+|. | .++..|++.|++|++.|-++.-+..
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~ 53 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEE 53 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 56899999985 2 3677788889999999999875543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.57 E-value=3 Score=37.23 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=25.4
Q ss_pred CCCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFM 153 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~M 153 (298)
-.+.+|+++|+| +.+..+|+ .|.+|++.|.+..-
T Consensus 155 l~g~~v~IiG~G--~iG~~~a~~l~~~G~~V~~~d~~~~~ 192 (300)
T 2rir_A 155 IHGSQVAVLGLG--RTGMTIARTFAALGANVKVGARSSAH 192 (300)
T ss_dssp STTSEEEEECCS--HHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCEEEEEccc--HHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 357799999974 55555543 58999999999863
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.47 E-value=6.2 Score=33.80 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=23.9
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~ 151 (298)
..+||+-|++.| + ++..|+++|++|..++-+.
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~ 41 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSD 41 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999998654 2 6677788899999886543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.38 E-value=11 Score=32.50 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+||+-|++.| .++..|+++|++|..++-+..-+...
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 50 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDAC 50 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4568999997644 25666777899999999998765543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.32 E-value=5.2 Score=34.45 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+-|++.| .++..|+++|++|.+++-+..-+.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 45 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV 45 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 458999997544 256667778999999999876543
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=87.28 E-value=4.2 Score=39.34 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=67.4
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|-++|+|. +.++..|++.|++|++.|.++.-+..... .. ...
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~---~g--~~g---------------------------- 50 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA---NE--AKG---------------------------- 50 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH---TT--TTT----------------------------
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---cc--cCC----------------------------
Confidence 35799998774 23566677789999999999875543322 10 000
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
.++. ...+..++...-..-|+|+.+- -+...+.+.++.+...|+||.++|+.+-..+..
T Consensus 51 --------~~i~-~~~s~~e~v~~l~~aDvVil~V--p~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~---------- 109 (484)
T 4gwg_A 51 --------TKVV-GAQSLKEMVSKLKKPRRIILLV--KAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRD---------- 109 (484)
T ss_dssp --------SSCE-ECSSHHHHHHTBCSSCEEEECS--CSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHH----------
T ss_pred --------Ccee-ccCCHHHHHhhccCCCEEEEec--CChHHHHHHHHHHHHhcCCCCEEEEcCCCCchH----------
Confidence 0000 0111112111112357776654 122345678899999999999999865433321
Q ss_pred CCHHHHHHHHHhCCCEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~ 295 (298)
..++.+.+.+.|...+
T Consensus 110 --t~~~~~~l~~~Gi~fv 125 (484)
T 4gwg_A 110 --TTRRCRDLKAKGILFV 125 (484)
T ss_dssp --HHHHHHHHHHTTCEEE
T ss_pred --HHHHHHHHHhhccccc
Confidence 2344555666676544
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=87.24 E-value=3.1 Score=34.59 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=21.8
Q ss_pred eEEEecccCcHHHHHHH----HcCCeEEEeeCCH
Q psy3185 122 NILVPGAGLGRLAFEIA----RRGYVCQGNEFSL 151 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela----~~G~~v~g~D~S~ 151 (298)
+||+.|+ +|.++..++ +.|++|.+++-+.
T Consensus 2 ~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 2 KIFIVGS-TGRVGKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp EEEEEST-TSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred eEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7999994 566666555 4599999998775
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.07 E-value=3.4 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=28.2
Q ss_pred CeEEEecc-cC-c-HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGA-GL-G-RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGc-G~-G-rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|..+|+ |. | .++..|++.|++|++.|-+..-+..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 50 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDR 50 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 48999999 74 3 3666778889999999999875543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=1.2 Score=42.51 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=25.3
Q ss_pred CCCeEEEecccC-cHHHHHHH-HcCCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIA-RRGYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela-~~G~~v~g~D~S~~M 153 (298)
.+.+|+++|+|. |+.....+ ..|.+|.+.|.++.-
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~r 255 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC 255 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 577999999985 44333333 348999999999863
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=86.96 E-value=11 Score=32.10 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=29.9
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+-|++.| .++..|+++|+.|..++-+..-+..
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~ 48 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAER 48 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 4568999998654 3677788889999999999876543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=86.92 E-value=10 Score=32.54 Aligned_cols=39 Identities=21% Similarity=0.099 Sum_probs=28.6
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|++.| .++..|+++|+.|..++-+..-+...
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 69 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV 69 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3568999997544 25556677799999999998765543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.88 E-value=3.9 Score=35.68 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.5
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+||+-|++.| .++..|+++|+.|.+++-+..-+..+
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~ 52 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEA 52 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3568999998644 25666777899999999998755433
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=86.86 E-value=1.6 Score=41.98 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccC-cHHHHHHH-HcCCeEEEeeCCHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGL-GRLAFEIA-RRGYVCQGNEFSLFM 153 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~-Grla~ela-~~G~~v~g~D~S~~M 153 (298)
+++.+.+.... ...+.+|+++|+|. |+.....+ ..|.+|.+.|.++.-
T Consensus 233 lvdgI~Ratg~---~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~ 282 (464)
T 3n58_A 233 LVDGIRRGTDV---MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC 282 (464)
T ss_dssp HHHHHHHHHCC---CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred HHHHHHHhcCC---cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 45555543221 23577999999874 44333333 248899999998863
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=86.84 E-value=0.85 Score=41.69 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=26.6
Q ss_pred CC-CeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCH
Q psy3185 119 KD-VNILVPGA--GLGRLAFEIARR-GYVCQGNEFSL 151 (298)
Q Consensus 119 ~~-~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~ 151 (298)
++ .+||+.|+ |.|.++..+|+. |..|.++.-+.
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~ 202 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR 202 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence 46 79999996 789999999975 99988776443
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.78 E-value=14 Score=31.67 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|++.| + ++..|++.|++|..++-+..-+...
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 51 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDV 51 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence 3568999998655 3 6777888899999999998766543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=86.70 E-value=10 Score=32.41 Aligned_cols=38 Identities=32% Similarity=0.208 Sum_probs=29.2
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+-|++.| .++..|+++|++|..++-+..-+..
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~ 48 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQA 48 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4568999998654 3666777889999999998875543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.41 E-value=2.8 Score=37.81 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=28.6
Q ss_pred CeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|.++|||. | .++..|++.|++|+++|-++.-+..
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~ 42 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKE 42 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 5899999986 2 3666778889999999999875543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.40 E-value=2.9 Score=37.46 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=28.1
Q ss_pred CCeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
..+|-++|+|. | .++..|++.|++|++.|.++.-+.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~ 58 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCD 58 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 46899999885 2 366667788999999999987544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.17 E-value=1.4 Score=38.64 Aligned_cols=73 Identities=10% Similarity=0.184 Sum_probs=45.7
Q ss_pred eEEecccccccc--CCCceeEEEec--ccccCc------------chHHHHHHHHHHhccCCeEEEE-eccccccccCCC
Q psy3185 209 SMAAGDFLQVYV--HPNKWDCVATC--FFIDCA------------NNIVSFIETIFNILKPGGIWIN-LGPLLYHYSNML 271 (298)
Q Consensus 209 ~~~~gDf~~~~~--~~~~fD~V~t~--ffidta------------~n~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~~~ 271 (298)
.+..||..+... .++++|+|+|- |..... .-+...++.++++|||||.++. .++ |.
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d--~~----- 78 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--FN----- 78 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--HH-----
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc--HH-----
Confidence 366777655432 35789998874 443311 1345678888999999998653 233 11
Q ss_pred CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+..++...||.+..
T Consensus 79 --------~~~~~~~~~~~gf~~~~ 95 (260)
T 1g60_A 79 --------CAFICQYLVSKGMIFQN 95 (260)
T ss_dssp --------HHHHHHHHHHTTCEEEE
T ss_pred --------HHHHHHHHHhhccceeE
Confidence 23456677788987654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=13 Score=32.17 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S 150 (298)
.+..||+-|++.| + ++..|++.|+.|..+|.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence 4568999998654 3 677788889999999886
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=86.09 E-value=8.5 Score=33.81 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCCeEEEecccCcHHH----HHHHHcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAGLGRLA----FEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla----~ela~~G~~v~g~D~S~~Ml 154 (298)
++.+||+.|+ +|.++ ..|+++|++|.+++-+..-.
T Consensus 10 ~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 48 (342)
T 1y1p_A 10 EGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKL 48 (342)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccH
Confidence 4578999996 34444 44566799999999887543
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=86.09 E-value=1.1 Score=42.29 Aligned_cols=42 Identities=12% Similarity=-0.070 Sum_probs=35.3
Q ss_pred CCCCeEEEecccCcHHHHHHH-HcC---CeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIA-RRG---YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela-~~G---~~v~g~D~S~~Ml~~a~~ 159 (298)
+++..|+|+||+.|..+..++ +.+ ..|.++|.++......+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~ 270 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN 270 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 457799999999999999988 444 479999999998876655
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=86.08 E-value=9.1 Score=32.65 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+-|++.| + ++..|++.|++|..++-+..-+..
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~ 45 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKA 45 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3568999998654 2 666778889999999999875543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.99 E-value=4.3 Score=39.30 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.2
Q ss_pred CCeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
..+|-++|+|. | .++..|++.|++|++.|-++.-+..
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~ 48 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDH 48 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45899999984 3 3677788899999999999875543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=85.95 E-value=3.8 Score=39.24 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=28.6
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|.++|+|. +.++..|++.|++|.+.|-++.-+..
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~ 43 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEE 43 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 5799999885 34667788889999999999876543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=14 Score=31.61 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=27.5
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+-|++.| .++..|+++|++|.+++-+..-+.
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~ 47 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN 47 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3568999997544 255667778999999999876543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=85.82 E-value=3.2 Score=37.22 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=59.8
Q ss_pred CeEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.||=.+|.|.= .++..|++.||+|++.|.|+.-.... ..
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l------------------~~--------------------- 46 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL------------------TK--------------------- 46 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT------------------TT---------------------
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH------------------HH---------------------
Confidence 47889987762 35566777899999999887522110 00
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHH-HHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVS-FIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~-yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
... -...+..++ -..-|+|++|.- +...+.+ +...+...++||+++|+.+-..+.
T Consensus 47 -------~G~-~~~~s~~e~---~~~~dvvi~~l~--~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~----------- 102 (297)
T 4gbj_A 47 -------LGA-TVVENAIDA---ITPGGIVFSVLA--DDAAVEELFSMELVEKLGKDGVHVSMSTISPE----------- 102 (297)
T ss_dssp -------TTC-EECSSGGGG---CCTTCEEEECCS--SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHH-----------
T ss_pred -------cCC-eEeCCHHHH---HhcCCceeeecc--chhhHHHHHHHHHHhhcCCCeEEEECCCCChH-----------
Confidence 000 011122222 134577877642 2222222 345678889999999975432221
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
+..++.+.+.+.|...++
T Consensus 103 -~~~~~~~~~~~~g~~~ld 120 (297)
T 4gbj_A 103 -TSRQLAQVHEWYGAHYVG 120 (297)
T ss_dssp -HHHHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHhcCCceec
Confidence 146677777777877653
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.60 E-value=17 Score=31.38 Aligned_cols=37 Identities=24% Similarity=0.114 Sum_probs=27.3
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+-|++.| + ++..|++.|++|..++-+..-+.
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 59 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD 59 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3568999997543 2 55566778999999999876544
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=5 Score=36.04 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=26.5
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|=.+|.|. ..++..|++.||.|++.|.++.-..
T Consensus 5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~ 40 (300)
T 3obb_A 5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVD 40 (300)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHH
Confidence 677888776 3366667788999999999987554
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=4.7 Score=42.49 Aligned_cols=42 Identities=17% Similarity=-0.041 Sum_probs=35.7
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCC-e-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGY-V-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~-~-v~g~D~S~~Ml~~a~~ 159 (298)
....+++|+=||.|.++.-|.+.|+ + |.|+|++.......+.
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~ 581 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRL 581 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHH
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHH
Confidence 3567899999999999999999998 4 7799999998776543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=85.53 E-value=9.2 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=28.7
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+-|++.| .++..|++.|+.|..++-+..-+..
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~ 71 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV 71 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4568999998654 2666777889999999988765543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=85.49 E-value=3.3 Score=34.13 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=23.0
Q ss_pred eEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 122 NILVPGA--GLGR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 122 ~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
+||+.|+ |+|+ ++..|+++|++|++++-+..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~ 35 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG 35 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence 7999995 2444 45556677999999998764
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=85.30 E-value=3.1 Score=37.83 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEe
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGN 147 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~ 147 (298)
++.+||+.|+ |.|.++..+|+. |..|.++
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~ 198 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINV 198 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEE
Confidence 5779999997 789999999985 8876554
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=85.19 E-value=17 Score=31.25 Aligned_cols=39 Identities=23% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+||+-|++.| + ++..|++.|++|..++-+..-+...
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 60 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAA 60 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3568999998654 2 6667778899999999998766543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=85.18 E-value=16 Score=31.65 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=28.3
Q ss_pred CCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 120 DVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
+.+||+-|++.| .++..|+++|+.|..++-+..-+...
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 64 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAA 64 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 568999997654 26667778899999999998765443
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.16 E-value=16 Score=31.55 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=24.4
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeC
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEF 149 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~ 149 (298)
++..||+-|++.| + ++..|++.|++|..+|.
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r 47 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDI 47 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence 4568999998654 2 66677888999999987
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=85.14 E-value=6.4 Score=34.53 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.2
Q ss_pred CCeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
..+|.++|||. | .++..|++.|++|++.|.++.-+.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~ 41 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVA 41 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 46899999985 3 356667788999999999987543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=85.14 E-value=9.4 Score=34.47 Aligned_cols=137 Identities=11% Similarity=0.047 Sum_probs=82.8
Q ss_pred CeEEEecccCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
..|+++|||+=-.++.+.. .+..|.=+|+ +.++...+.++.....
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~--------------------------------- 149 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGV--------------------------------- 149 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTC---------------------------------
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCC---------------------------------
Confidence 4699999999999999883 3577888995 7888777776643110
Q ss_pred CCCCCCCCeeEEecccccccc---CCCcee-----EEEe---cccccCcchHHHHHHHHHHhccCCeEEEE--eccc---
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYV---HPNKWD-----CVAT---CFFIDCANNIVSFIETIFNILKPGGIWIN--LGPL--- 263 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~---~~~~fD-----~V~t---~ffidta~n~~~yl~~I~~~LkpGG~~In--~gPl--- 263 (298)
....+..++.+|+.+-.. ....|| +++. .+++.. +.....++.|...+.||+.++- +.|-
T Consensus 150 ---~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~ 225 (310)
T 2uyo_A 150 ---TPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVETSPLHGDE 225 (310)
T ss_dssp ---CCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEECCCTTCSH
T ss_pred ---CCCCCeEEEecchHhhHHHHHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEecCCCCcc
Confidence 012466777777765100 112344 2222 123433 4678899999999899987652 1111
Q ss_pred c---------ccccCCC-----CCCccCC--C-HHHHHHHHHhCCCEEE
Q psy3185 264 L---------YHYSNML-----NEDSIEP--S-YEVVKQVIQGLGFVYE 295 (298)
Q Consensus 264 ~---------y~~~~~~-----~~~~~~l--s-~eEl~~~~~~~GF~i~ 295 (298)
. -++.... .-.++.. + .+++.+.+.+.||+..
T Consensus 226 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 226 WREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp HHHHHHHHHHHHHC-----------CCTTCCTTCCCHHHHHTTTTEEEE
T ss_pred hhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHHHHHHHHHCcCccc
Confidence 0 1111111 0012333 6 7899999999999876
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=12 Score=32.01 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=25.9
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml 154 (298)
.+.+||+-|++.| .++..|+++|++|.+++-+..-+
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~ 53 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG 53 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHH
Confidence 3568999997533 24555667799999999887643
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=12 Score=31.39 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=27.3
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+.+||+-|++.| + ++..|+++|+.|..++-+..-+..
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 41 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEK 41 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 357899997543 2 566677789999999999875543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=84.81 E-value=11 Score=32.85 Aligned_cols=38 Identities=24% Similarity=0.121 Sum_probs=28.9
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+.+||+-|++.| + ++..|++.|+.|..++-+..-+..
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~ 65 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQ 65 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4568999997544 2 666777889999999998876544
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.81 E-value=15 Score=31.31 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|++.| + ++..|+++|++|..++-+..-+...
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 46 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEA 46 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3568999997644 2 5667778899999999998766543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=84.70 E-value=2.7 Score=37.03 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=26.9
Q ss_pred eEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-++|+|. |. ++..|++.|++|++.|.++.-+..
T Consensus 3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~ 39 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAP 39 (287)
T ss_dssp CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHH
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH
Confidence 688999885 32 566677889999999999875443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.67 E-value=6.2 Score=37.82 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.0
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|.++|+|. +.++..|++.|++|++.|-++.-+..
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~ 39 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEE 39 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3688999885 34667778889999999999876544
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=4.5 Score=35.16 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=24.8
Q ss_pred CCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
+.+||+-|++ .|+ ++..|+++|++|..++-+..
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~ 43 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 43 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5689999974 443 55556677999999988765
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.65 E-value=8.9 Score=32.86 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+-|++.| .++..|+++|+.|..++-+..-+...
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 47 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPL 47 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3568999998765 26667778899999999988765543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.58 E-value=5.7 Score=35.42 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=28.8
Q ss_pred CCCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
...+|.++|+|. |. ++..|++.|++|++.|.++.-+..
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~ 47 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAA 47 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 356899998873 33 566677789999999999976544
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.51 E-value=18 Score=31.54 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=26.6
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeC-CHHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEF-SLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~-S~~Ml~ 155 (298)
+.+||+-|++.| + ++..|+++|+.|..++- +..-+.
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~ 64 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIR 64 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHH
Confidence 568999997544 2 66677788999999998 555443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=84.50 E-value=4.8 Score=32.03 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=35.4
Q ss_pred ceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..|+|+.+- ..+...+.++.+.+ +.++++|+..|- . .+++.+.+++.|..++
T Consensus 70 ~~Dlvii~v---p~~~v~~v~~~~~~-~g~~~i~i~~~~-------------~---~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 70 KVDMVDVFR---NSEAAWGVAQEAIA-IGAKTLWLQLGV-------------I---NEQAAVLAREAGLSVV 121 (145)
T ss_dssp CCSEEECCS---CSTHHHHHHHHHHH-HTCCEEECCTTC-------------C---CHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEe---CHHHHHHHHHHHHH-cCCCEEEEcCCh-------------H---HHHHHHHHHHcCCEEE
Confidence 568777653 24556677777666 577888874210 1 5788999999998876
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.43 E-value=6.1 Score=36.39 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
..+|.++|+|. +.++..|++.|++|+..+.++.-+...
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i 68 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEM 68 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 46899999996 346777888999999999998765543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.38 E-value=13 Score=32.24 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~ 152 (298)
++.+||+-|++.| .++..|++.|+.|..++-+..
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~ 66 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG 66 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH
Confidence 4678999998654 367777888999999996543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=84.26 E-value=1.8 Score=39.50 Aligned_cols=84 Identities=10% Similarity=0.089 Sum_probs=50.4
Q ss_pred CeeEE-ecccccccc--CCCceeEEEec--cccc---------CcchHHHHHHHHHHhccCCeEEEEeccccccccCCCC
Q psy3185 207 DFSMA-AGDFLQVYV--HPNKWDCVATC--FFID---------CANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN 272 (298)
Q Consensus 207 ~~~~~-~gDf~~~~~--~~~~fD~V~t~--ffid---------ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~ 272 (298)
...+. .||..++.. +++++|+|+|- |... ...-+...+..++++|||||.++.... ++...
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~--~~~~~--- 112 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG--LQYQG--- 112 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC--SCCCC---
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC--ccccc---
Confidence 34566 899876432 45799999884 4432 112356788889999999998764322 11110
Q ss_pred CCccCCCHHHHHHHHHhCC-CEEEE
Q psy3185 273 EDSIEPSYEVVKQVIQGLG-FVYEV 296 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~G-F~i~~ 296 (298)
....-....+...+...| |.+..
T Consensus 113 -~~~~~~l~~l~~~i~~~G~~~~~~ 136 (319)
T 1eg2_A 113 -EAGSGDLISIISHMRQNSKMLLAN 136 (319)
T ss_dssp -CTTBCCHHHHHHHHHHHCCCEEEE
T ss_pred -ccccccHHHHHHHHhCcccceeEE
Confidence 001123456677777777 87654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=84.04 E-value=9.3 Score=36.35 Aligned_cols=37 Identities=19% Similarity=0.020 Sum_probs=28.9
Q ss_pred CeEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+|-++|+|.= .+|..|++.|++|+++|.++.-+...
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l 41 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQL 41 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHH
Confidence 58999998853 35566788899999999999866543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=19 Score=30.58 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+-|++.| .++..|+++|++|..++-+..-+.
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 45 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLR 45 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 568999997544 255666778999999999876554
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.96 E-value=6.3 Score=35.35 Aligned_cols=39 Identities=18% Similarity=0.036 Sum_probs=29.3
Q ss_pred CCCeEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
...+|.++|+|.= .+|..|++.|++|+.+ .++.-+...+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~ 58 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIE 58 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHH
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHH
Confidence 4679999999953 4677788899999999 8877665443
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.87 E-value=18 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S 150 (298)
.+..||+-|++.| .++..|++.|+.|..+|.+
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~ 79 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC 79 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 3568999998654 2667788889999999876
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.83 E-value=14 Score=32.27 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+.+||+-|++.| .++..|++.|+.|..++-+..-+..
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~ 47 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAE 47 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3568999998654 2666777889999999999876543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.76 E-value=21 Score=30.99 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=28.5
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+-|++.| + ++..|+++|+.|..++-+..-+.
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~ 65 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAV 65 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4668999998654 2 66677788999999999876543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.74 E-value=4.7 Score=34.55 Aligned_cols=36 Identities=36% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCeEEEecccC--cH-HHHHHHHcCCeEEEeeC-CHHHH
Q psy3185 119 KDVNILVPGAGL--GR-LAFEIARRGYVCQGNEF-SLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~-S~~Ml 154 (298)
++.+||+.|++. |+ ++..|+++|++|.+++- +..-+
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~ 59 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAA 59 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHH
Confidence 356899999743 22 55556677999999988 66544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.69 E-value=6.2 Score=34.06 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCCe-EEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGYV-CQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~~-v~g~D~S~~Ml~~ 156 (298)
+.+|.++|||. |+ ++..|++.|++ |...|-+..-+..
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~ 49 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARE 49 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHH
Confidence 46899999973 33 55566777998 9999999875543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.63 E-value=8.3 Score=32.22 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=24.7
Q ss_pred eEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml~~ 156 (298)
+|+++|+ |+++..+| +.|++|+.+|.++.-+..
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~ 38 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEE 38 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 6888886 55555554 569999999999886543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=83.55 E-value=21 Score=30.83 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=29.6
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+||+-|++.| + ++..|++.|++|..++-+..-+...
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 51 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGA 51 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4568999998544 2 6667778899999999998765543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=19 Score=30.80 Aligned_cols=35 Identities=14% Similarity=-0.034 Sum_probs=26.6
Q ss_pred CCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+-|++.| .++..|+++|++|.+++-+..-+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 44 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG 44 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 568999997544 35666777899999999987644
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=7.4 Score=39.51 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=34.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC------Ce-EEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG------YV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G------~~-v~g~D~S~~Ml~~a~~ 159 (298)
+..+|||+=||.|.++.-|.+.| |+ +.|+|+++.+....+.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~ 258 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKY 258 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHH
Confidence 45789999999999998887776 66 6799999998876543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=83.44 E-value=12 Score=35.90 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=29.4
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~ 152 (298)
-.+|-++|+|+ +.+|..+++.|+.|+..|.++.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 35899999997 5688889999999999999998
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=5.9 Score=33.48 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCCeEEEecccCcH----HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLGR----LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr----la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|++ |. ++..|+++|++|.+++-+..-+.
T Consensus 10 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~ 49 (255)
T 1fmc_A 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAAN 49 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 35689999964 44 44555667999999999876443
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=6.4 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCH
Q psy3185 120 DVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~ 151 (298)
+.+||+-|++ .|+ ++..|+++|++|..++-+.
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 45 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 45 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence 4689999974 444 5566777899999998876
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.34 E-value=19 Score=31.22 Aligned_cols=38 Identities=26% Similarity=0.149 Sum_probs=29.1
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
+.+||+-|++.| + ++..|++.|+.|..++-+..-+...
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 44 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAI 44 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 458999998644 3 6667778899999999998766543
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.21 E-value=20 Score=30.25 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=28.1
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+.+||+-|++.| + ++..|+++|++|..++-+..-+..
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~ 42 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQ 42 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 357999998544 3 566777889999999999875543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=83.16 E-value=5.8 Score=33.72 Aligned_cols=35 Identities=11% Similarity=-0.111 Sum_probs=25.3
Q ss_pred CCeEEEecccCcHHH----HHHHH-cCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLA----FEIAR-RGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla----~ela~-~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+-|++ |.++ ..|++ .|+.|.+++-+..-+.
T Consensus 4 ~k~vlITGas-ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~ 43 (276)
T 1wma_A 4 IHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQ 43 (276)
T ss_dssp CCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHhcCCeEEEEeCChHHHH
Confidence 5689999964 4444 45566 7999999998876443
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=83.07 E-value=23 Score=30.89 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++..+|+=|++.|- ++..||+.|+.|..+|.+..-+....
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~ 48 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIV 48 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 46688999976653 56677888999999999988665443
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.91 E-value=19 Score=31.24 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=26.9
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeC-CHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEF-SLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~-S~~Ml~ 155 (298)
.+..||+-|++.| + ++..|++.|+.|..++. +..-+.
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~ 68 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA 68 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence 3568999997654 2 66777888999999985 555443
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.88 E-value=17 Score=32.36 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=29.9
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
.+.+||+-|++.| + ++..|+++|+.|.+++-+..-+...
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~ 48 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKA 48 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3568999998654 2 6666777899999999998766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 298 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 7e-09 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-05 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 7e-09
Identities = 22/200 (11%), Positives = 58/200 (29%), Gaps = 18/200 (9%)
Query: 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML-FASNFIL 161
+ + F ++ + + + G + +L +F ++
Sbjct: 40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQ 98
Query: 162 NKCREKNVYKIYPWVQQTDNNILT---HHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV 218
+ N + + + + D +
Sbjct: 99 EEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQP-------QPLGAG 151
Query: 219 YVHPNKWDCVATCFFIDCA-NNIVSFIETIFNI---LKPGGIWINLGPLLYHY--SNMLN 272
P D + + F ++ ++ SF + +I L+PGG + +G L + +
Sbjct: 152 SPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211
Query: 273 EDSIEPSYEVVKQVIQGLGF 292
+ S E V++ + G+
Sbjct: 212 LTVVPVSEEEVREALVRSGY 231
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 43.2 bits (100), Expect = 1e-05
Identities = 19/197 (9%), Positives = 51/197 (25%), Gaps = 13/197 (6%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
+++ L ++ +LVP G + ++ +GY G E S + +
Sbjct: 5 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAA-------VER 57
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
+ + + Q + T+ C +
Sbjct: 58 YFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDR-AAMIALPADM 116
Query: 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP-----LLYHYSNMLNEDSIEP 278
+ V + I ++ G ++ ++ + +
Sbjct: 117 RERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDT 176
Query: 279 SYEVVKQVIQGLGFVYE 295
+ + + GL + E
Sbjct: 177 LHSSARGLKAGLERMDE 193
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 298 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.87 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.86 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.85 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.84 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.83 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.79 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.78 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.77 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.71 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.7 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.68 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.66 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.64 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.64 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.62 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.61 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.6 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.59 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.58 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.51 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.49 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.48 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.48 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.45 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.44 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.41 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.39 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.37 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.36 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.32 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.31 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.19 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.15 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.15 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.13 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.13 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.07 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.05 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.04 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.03 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.0 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.92 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.9 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.88 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.86 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.84 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.84 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.8 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.78 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.77 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.74 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.74 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.72 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.64 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.61 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.57 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.57 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.56 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.56 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.55 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.46 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.44 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.38 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.37 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.36 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.35 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.28 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.25 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.2 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.13 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.98 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.94 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.83 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.81 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.68 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.63 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.42 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.33 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.21 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.21 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.21 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.98 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.93 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.5 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.45 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.38 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.32 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.29 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.28 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.18 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.12 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.04 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.02 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.98 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.87 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.85 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.8 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.76 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.66 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.66 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.54 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.29 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.21 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.92 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.8 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.39 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.97 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.75 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.71 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.68 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.54 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.51 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.5 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.45 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.29 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.17 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.15 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.99 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.61 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.08 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 91.92 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.85 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.75 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 91.67 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.23 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 91.03 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.0 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 90.98 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.9 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.61 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.59 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 90.46 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.29 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 90.22 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.17 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 90.16 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.96 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.83 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 89.72 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 89.43 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.18 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.17 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.97 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 88.94 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.93 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.77 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 88.71 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.62 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.24 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.23 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 88.19 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.31 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.02 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 86.88 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 86.46 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.42 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 85.76 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.63 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 85.41 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 85.23 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 84.69 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 84.37 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 84.11 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 83.96 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 83.89 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.83 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 83.72 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 83.33 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.32 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.06 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.97 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 81.24 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 80.86 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 80.68 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 80.4 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.24 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.87 E-value=1.3e-21 Score=169.96 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=111.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++++|.+|+|+|+|+.|+..|+......
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~---------------------------------- 60 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN---------------------------------- 60 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccc----------------------------------
Confidence 5689999999999999999999999999999999999988743321
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc---------ccccc-
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL---------LYHYS- 268 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl---------~y~~~- 268 (298)
...++.++.+|+.+++.++++||+|++.+.+++.+++...+++++++|||||+++...+- .|++.
T Consensus 61 -----~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 135 (231)
T d1vl5a_ 61 -----GHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVE 135 (231)
T ss_dssp -----TCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHH
T ss_pred -----ccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHH
Confidence 013788999999999878899999999999999999999999999999999988753221 11110
Q ss_pred -CCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 269 -NMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 -~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.........++.+++.++++++||++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 164 (231)
T d1vl5a_ 136 KERDYSHHRAWKKSDWLKMLEEAGFELEE 164 (231)
T ss_dssp HHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred hhcccCcccCCCHHHHHHHHHHCCCEEEE
Confidence 0011233457899999999999999875
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=2.7e-21 Score=169.26 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=116.1
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~ 183 (298)
++.|.+..+. +++.+|||+|||+|.++..|+++|++|+|+|+|+.|+..|+..+...
T Consensus 5 ~~~l~~~~~~----~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~------------------- 61 (234)
T d1xxla_ 5 LGLMIKTAEC----RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK------------------- 61 (234)
T ss_dssp HHHHHHHHTC----CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhCC----CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccc-------------------
Confidence 3445455443 46789999999999999999999999999999999999998744320
Q ss_pred cccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec--
Q psy3185 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG-- 261 (298)
Q Consensus 184 ~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g-- 261 (298)
. ..++.+..+|..+++.++++||+|++++.+++.+|+..++++++++|||||+++...
T Consensus 62 -----------------~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 62 -----------------G---VENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp -----------------T---CCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------c---cccccccccccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 0 036889999999988888999999999999999999999999999999999987531
Q ss_pred ----ccc---cc-cc-CCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 ----PLL---YH-YS-NMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 ----Pl~---y~-~~-~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|.+ +. +. .........++.+++..++++.||.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~ 165 (234)
T d1xxla_ 122 APEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 165 (234)
T ss_dssp BCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred CCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeE
Confidence 110 00 00 0011233456899999999999998754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=6.7e-21 Score=163.93 Aligned_cols=127 Identities=17% Similarity=0.261 Sum_probs=102.9
Q ss_pred hhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhh
Q psy3185 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCRE 166 (298)
Q Consensus 87 dWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~ 166 (298)
+|++.+..+.+..+..+...+.++++ ++.+|||+|||+|+++..||+.|++|+|+|+|+.|+..|+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~-- 82 (226)
T d1ve3a1 11 TYTDINSQEYRSRIETLEPLLMKYMK------KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR-- 82 (226)
T ss_dssp TTTCTTSHHHHHHHHHHHHHHHHSCC------SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcC------CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccc--
Confidence 45556666665556666666777666 3579999999999999999999999999999999999998743320
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHH
Q psy3185 167 KNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFI 244 (298)
Q Consensus 167 ~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl 244 (298)
..++.++.+|+.+++.++++||+|++.+.+++.+ ++..++
T Consensus 83 --------------------------------------~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l 124 (226)
T d1ve3a1 83 --------------------------------------ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVF 124 (226)
T ss_dssp --------------------------------------TCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHH
T ss_pred --------------------------------------cccccccccccccccccCcCceEEEEecchhhCChhHHHHHH
Confidence 0245678889998887889999999999888764 788899
Q ss_pred HHHHHhccCCeEEEE
Q psy3185 245 ETIFNILKPGGIWIN 259 (298)
Q Consensus 245 ~~I~~~LkpGG~~In 259 (298)
++|+++|||||.+|.
T Consensus 125 ~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 125 KEVRRVLKPSGKFIM 139 (226)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCcEEEE
Confidence 999999999999874
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.84 E-value=5.9e-21 Score=160.43 Aligned_cols=159 Identities=10% Similarity=0.050 Sum_probs=109.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
++...+..+-+ .++.+|||||||+|+.+..||++|++|+|+|+|..|+..++...+.... ...
T Consensus 8 ~~~~~~~~l~~-----~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~--~~~---------- 70 (201)
T d1pjza_ 8 DLQQYWSSLNV-----VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPH--ITS---------- 70 (201)
T ss_dssp HHHHHHHHHCC-----CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSE--EEE----------
T ss_pred HHHHHHHHcCC-----CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccc--hhh----------
Confidence 34444544433 3578999999999999999999999999999999999999875432100 000
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~I 258 (298)
..+... ....+..+..+|+.++.. ..+.||+|++.++++.. .+...+++.|+++|||||.++
T Consensus 71 ------------~~~~~~---~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 71 ------------QGDFKV---YAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp ------------ETTEEE---EECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ------------hhhhhh---ccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 000000 012466789999988764 34789999988777655 357789999999999999876
Q ss_pred EeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 259 NLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 259 n~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
.... .|. ......+...++.+|+++++. .+|++.
T Consensus 136 l~~~-~~~-~~~~~~p~~~~~~~el~~l~~-~~~~i~ 169 (201)
T d1pjza_ 136 LITL-EYD-QALLEGPPFSVPQTWLHRVMS-GNWEVT 169 (201)
T ss_dssp EEEE-SSC-SSSSSSCCCCCCHHHHHHTSC-SSEEEE
T ss_pred EEEc-ccc-cccCCCccccCCHHHHHHHhC-CCcEEE
Confidence 3221 111 111223456789999999884 588874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=1.5e-20 Score=161.02 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=109.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
|..-++.+....| +.+|||+|||+|+++..++ .++|+|+|+.|+..++.
T Consensus 24 ~~~~~~~~~~~~~-------~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~-------------------- 72 (208)
T d1vlma_ 24 YLSELQAVKCLLP-------EGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARK-------------------- 72 (208)
T ss_dssp HHHHHHHHHHHCC-------SSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHH--------------------
T ss_pred HHHHHHHHHhhCC-------CCeEEEECCCCcccccccc----eEEEEeCChhhcccccc--------------------
Confidence 4445566666655 4589999999999998885 47999999999998764
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.++.+..+|+.+++..+++||+|++.+.|++.+++..++++++++|||||.++.
T Consensus 73 --------------------------~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i 126 (208)
T d1vlma_ 73 --------------------------RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 126 (208)
T ss_dssp --------------------------TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred --------------------------cccccccccccccccccccccccccccccccccccccchhhhhhcCCCCceEEE
Confidence 145678899988877789999999999999999999999999999999999886
Q ss_pred eccccccc------cC----CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPLLYHY------SN----MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl~y~~------~~----~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|-...+ .. ........+|.+++.++++++||+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 127 GIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp EEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 54422110 00 011233458999999999999998764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.9e-20 Score=163.74 Aligned_cols=169 Identities=11% Similarity=0.040 Sum_probs=115.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
..+.+++.+.+.++. .++.+|||||||+|+++..||++|++|+|+|+|+.|+..++...+.. ......
T Consensus 29 ~~~~l~~~~~~~l~~----~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~-----~~~~~~--- 96 (229)
T d2bzga1 29 GHQLLKKHLDTFLKG----KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLS-----YSEEPI--- 96 (229)
T ss_dssp CCHHHHHHHHHHHTT----CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC-----EEEEEC---
T ss_pred CCHHHHHHHHHhcCC----CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc-----ccccch---
Confidence 344566777666542 25679999999999999999999999999999999998877632210 000000
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCc--chHHHHHHHHHHhccCCe
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGG 255 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG 255 (298)
..++.... ......++.+..+|+.++.. ..+.||+|.++.+++.. +....|++.+.++|||||
T Consensus 97 -------------~~~~~~~~-~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG 162 (229)
T d2bzga1 97 -------------TEIPGTKV-FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF 162 (229)
T ss_dssp -------------TTSTTCEE-EEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEE
T ss_pred -------------hcccccce-eeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcc
Confidence 00000000 00112588999999988864 45899999988776644 567899999999999999
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+++..... +... ....+...+|.+|+.+++.. +|++..
T Consensus 163 ~~~l~~~~-~~~~-~~~gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 163 QYLLCVLS-YDPT-KHPGPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp EEEEEEEE-CCTT-TCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred eEEEEEcc-cCCC-CCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence 87644321 1111 11235567899999999955 787743
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.83 E-value=7e-20 Score=164.71 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=118.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
..+++.|....+. .++.+|||+|||+|.++..||++ |..|+|+|+|+.|+..++...+..
T Consensus 53 ~~~~~~l~~~~~l----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~--------------- 113 (282)
T d2o57a1 53 EWLASELAMTGVL----QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA--------------- 113 (282)
T ss_dssp HHHHHHHHHTTCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccc---------------
Confidence 3456666665543 35789999999999999999987 889999999999999888744321
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++.+..+|+.+++.++++||+|++...+.+.+++..++++++++|||||.++.
T Consensus 114 ---------------------gl--~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~ 170 (282)
T d2o57a1 114 ---------------------GL--ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 170 (282)
T ss_dssp ---------------------TC--TTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------------cc--cccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEE
Confidence 01 1478999999999988889999999998888889999999999999999999886
Q ss_pred eccccccccCCC--------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPLLYHYSNML--------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl~y~~~~~~--------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|..-...... .......|.+++.++++++||+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~ 215 (282)
T d2o57a1 171 TDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLR 215 (282)
T ss_dssp EEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEE
T ss_pred EEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEE
Confidence 544211110000 0112235789999999999998764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.83 E-value=1.8e-20 Score=163.34 Aligned_cols=146 Identities=13% Similarity=0.115 Sum_probs=114.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+.+++.+...+. +.+|||+|||+|+++..++++|++|+|+|+|+.|+..++...
T Consensus 9 ~~~~~~~~~~~~-------~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~------------------- 62 (225)
T d2p7ia1 9 PFMVRAFTPFFR-------PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL------------------- 62 (225)
T ss_dssp HHHHHHHGGGCC-------SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS-------------------
T ss_pred HHHHHHhhhhCC-------CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc-------------------
Confidence 345566666543 568999999999999999999999999999999999887521
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHH-HhccCCeEEEE
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIF-NILKPGGIWIN 259 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~-~~LkpGG~~In 259 (298)
+ .++.++.+|+.++.. +++||+|++..+|++.+|....+.+++ ++|||||.++.
T Consensus 63 ----------------------~--~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i 117 (225)
T d2p7ia1 63 ----------------------K--DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 117 (225)
T ss_dssp ----------------------C--SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----------------------c--ccccccccccccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEE
Confidence 0 267788999988764 689999999999999999999999998 79999999985
Q ss_pred eccccccc-----------cCCC--------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 LGPLLYHY-----------SNML--------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~gPl~y~~-----------~~~~--------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.-|-.+.. .... ..+...++.++++++++++||++++.
T Consensus 118 ~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 118 VCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp EEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 44421110 0000 11334589999999999999999863
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.1e-20 Score=162.78 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhccCChHHHhhhhHHHH-HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 77 VQTTLKQFVRDWSEEGSEERKTCYEPII-SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 77 v~~~l~~~~RdWs~~g~~ER~~~~~~i~-~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
..+-+.+++..|...........+..++ ..+.++.+ ++.+|||+|||+|+++..|+++|++|+|+|+|+.|+.
T Consensus 5 ~~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~ 78 (246)
T d2avna1 5 SWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK------NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLE 78 (246)
T ss_dssp HHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC------SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC------CCCEEEEECCCCchhcccccccceEEEEeeccccccc
Confidence 4455666666775433222222222333 44555554 3679999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cc
Q psy3185 156 ASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FI 234 (298)
Q Consensus 156 ~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fi 234 (298)
.|+. +. .-..+.+|+.+++.++++||+|++.+ ++
T Consensus 79 ~a~~---~~------------------------------------------~~~~~~~~~~~l~~~~~~fD~ii~~~~~~ 113 (246)
T d2avna1 79 VARE---KG------------------------------------------VKNVVEAKAEDLPFPSGAFEAVLALGDVL 113 (246)
T ss_dssp HHHH---HT------------------------------------------CSCEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred cccc---cc------------------------------------------ccccccccccccccccccccceeeecchh
Confidence 8875 21 01145677878777789999999864 78
Q ss_pred cCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 235 DCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 235 dta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
++.+|....+++|+++|||||+++..
T Consensus 114 ~~~~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 114 SYVENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence 88899999999999999999999753
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.7e-20 Score=160.98 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=108.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|+++..|++.++ +|+|+|+|+.|+..|+..+...
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~--------------------------------- 106 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------------- 106 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG---------------------------------
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccc---------------------------------
Confidence 467999999999999999876654 7999999999999998743210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEeccccc---cccCCCC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLY---HYSNMLN 272 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y---~~~~~~~ 272 (298)
...++++.++|+.++..++++||+|++.+.+++.++ +.+++++|+++|||||.++...+..- .+. ..
T Consensus 107 ------~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~--~~ 178 (222)
T d2ex4a1 107 ------GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD--DV 178 (222)
T ss_dssp ------GGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE--TT
T ss_pred ------cccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc--cC
Confidence 013678999999998877899999999999987755 46899999999999999986543211 111 11
Q ss_pred CCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 273 EDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
...+..+.++++++++++||++++.
T Consensus 179 ~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 179 DSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp TTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred CceeeCCHHHHHHHHHHcCCEEEEE
Confidence 2345568999999999999998764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=8.9e-20 Score=160.04 Aligned_cols=100 Identities=24% Similarity=0.416 Sum_probs=82.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+..+|||+|||+|+++..|+++|++|+|+|+|+.|+..|+..+.. .
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~---~------------------------------- 86 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE---R------------------------------- 86 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T-------------------------------
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccc---c-------------------------------
Confidence 456899999999999999999999999999999999999874321 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+.++.+..+|++++.. +++||+|++.+ ..-+.+++..+|++++++|||||++|.
T Consensus 87 ------~~~i~~~~~d~~~l~~-~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 87 ------NLKIEFLQGDVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp ------TCCCEEEESCGGGCCC-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------cccchheehhhhhccc-ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 1367899999999875 46999988753 223456888999999999999999974
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=1.6e-19 Score=158.74 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=82.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..||++|++|+|+|.|+.|+..|+..... .
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~---~------------------------------- 82 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS---Q------------------------------- 82 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH---T-------------------------------
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccc---c-------------------------------
Confidence 356999999999999999999999999999999999999874321 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc----cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF----FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f----fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
..++.+..+|+.++.. +++||+|++.+ ++.+.+++..+++.++++|||||++|
T Consensus 83 ------~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 83 ------GLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp ------TCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ------Cccceeeccchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 1367889999988754 57999988643 34466788899999999999999987
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=4.5e-19 Score=154.13 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=107.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
|...+.++.+ ++.+|||+|||+|.++..|++ .|++|+|+|+|+.|+..|+..+...
T Consensus 29 i~~~~~~~~~------~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~-------------- 88 (225)
T d1im8a_ 29 IGMLAERFVT------ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-------------- 88 (225)
T ss_dssp HHHHHHHHCC------TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS--------------
T ss_pred HHHHHHHhcC------CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh--------------
Confidence 3344445554 367999999999999999997 3789999999999999998744310
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~ 256 (298)
+...++.+..+|+.+++ .+.+|+|+++++++.. ++...++++|+++|||||.
T Consensus 89 ------------------------~~~~~~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~ 142 (225)
T d1im8a_ 89 ------------------------HSEIPVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV 142 (225)
T ss_dssp ------------------------CCSSCEEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEE
T ss_pred ------------------------cccchhhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCce
Confidence 11246778888887764 5678998888777654 6888999999999999999
Q ss_pred EEEecccccccc----------------C-C-CC----------CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYS----------------N-M-LN----------EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~----------------~-~-~~----------~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+|...+...... . . +. .....+|.+++..+++++||+.+.
T Consensus 143 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~ 210 (225)
T d1im8a_ 143 LVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVE 210 (225)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEE
T ss_pred eecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceE
Confidence 986543211000 0 0 00 011347899999999999998654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=5.4e-19 Score=155.54 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=115.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
-++.|.+.+.. .++.+|||+|||+|.++..+++. |..|+|+|+|+.|+..++..... .
T Consensus 21 ~~~~l~~~~~l----~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~---~-------------- 79 (245)
T d1nkva_ 21 KYATLGRVLRM----KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE---L-------------- 79 (245)
T ss_dssp HHHHHHHHTCC----CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHH---T--------------
T ss_pred HHHHHHHHcCC----CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHH---h--------------
Confidence 45666666653 35789999999999999999986 78999999999999988773221 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+...++.+..+|+.++. .+++||+|++...+++..|+..++++++++|||||+++...
T Consensus 80 ---------------------gl~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 80 ---------------------GVSERVHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp ---------------------TCTTTEEEEESCCTTCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---------------------hccccchhhhhHHhhcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence 11146899999999984 57899999999999999999999999999999999998644
Q ss_pred cccccccCC--------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 262 PLLYHYSNM--------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 262 Pl~y~~~~~--------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|........ .....-..+..++..++++.||+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 138 PYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180 (245)
T ss_dssp EEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred ccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence 421110000 01122346889999999999998653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=2.6e-19 Score=159.50 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=107.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+..+|||+|||+||++..|+.+++ .|+|+|.|+.|+..|+..+..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~---------------------------------- 138 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc----------------------------------
Confidence 567999999999999999887754 699999999999998863210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEeccccccc--cCCCCC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYHY--SNMLNE 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~~--~~~~~~ 273 (298)
..++.+..+|+.++.+++++||+|++...+++.++ +..+|++++++|||||+++...+..... ......
T Consensus 139 -------~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d 211 (254)
T d1xtpa_ 139 -------MPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211 (254)
T ss_dssp -------SSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTT
T ss_pred -------cccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccC
Confidence 13577889999998777899999999998887754 6789999999999999998543321110 000123
Q ss_pred CccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.++..|.++++++++++||+++++
T Consensus 212 ~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 212 SSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp TEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred CceeCCHHHHHHHHHHcCCEEEEE
Confidence 456679999999999999999764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.5e-20 Score=163.25 Aligned_cols=185 Identities=15% Similarity=0.040 Sum_probs=112.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcc-ccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKN-VYKIYPWVQ 177 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~-~~~i~p~~~ 177 (298)
...++..+.+.+... ..++.+|||+|||+|+++..++..|+ .|+|+|+|+.|+..++..++...... ......++.
T Consensus 34 ~~~~~~~~~~~~~~~--~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~ 111 (257)
T d2a14a1 34 LKFNLECLHKTFGPG--GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFAC 111 (257)
T ss_dssp HHHHHHHHHHHHSTT--SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHH
Confidence 345556666555422 23567999999999999999988876 59999999999999987554311100 000111111
Q ss_pred ccccccccc----ccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc----chHHHHHHHHHH
Q psy3185 178 QTDNNILTH----HQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA----NNIVSFIETIFN 249 (298)
Q Consensus 178 ~~s~~~~~~----~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta----~n~~~yl~~I~~ 249 (298)
..+...... ..++...... ....+..+....+...++||+|++.+.|++. ++...++++|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~ 181 (257)
T d2a14a1 112 ELEGNSGRWEEKEEKLRAAVKRV----------LKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLAS 181 (257)
T ss_dssp HHTTCGGGHHHHHHHHHHHEEEE----------EECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHT
T ss_pred HhccccchHHHHHHHHhhhhhcc----------cccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHh
Confidence 111100000 0000000000 0000111212223356899999999998876 467789999999
Q ss_pred hccCCeEEEEeccccccccCCCC--CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 250 ILKPGGIWINLGPLLYHYSNMLN--EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 250 ~LkpGG~~In~gPl~y~~~~~~~--~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+|||||++|..+++......... .....++.++++++++++||+++.
T Consensus 182 ~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 182 LLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp TEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEE
Confidence 99999999977665332211111 124568999999999999999865
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=9.1e-19 Score=149.43 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=98.7
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..|+++|++|+|+|+|+.|+..++..... . +
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~---~----------------------------~--- 76 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAA---E----------------------------G--- 76 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T----------------------------T---
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh---c----------------------------c---
Confidence 46999999999999999999999999999999999988764321 0 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCC--CCCc
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML--NEDS 275 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--~~~~ 275 (298)
-.++.+..+|+.+... +++||+|++.+++++. ++...++++++++|||||+++..... +..+.+ ..+.
T Consensus 77 -----~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~--~~~~~~~~~~~~ 148 (198)
T d2i6ga1 77 -----LDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM--DTPDFPCTVGFP 148 (198)
T ss_dssp -----CTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB--C---------CC
T ss_pred -----ccchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec--CCccCCCCCCCC
Confidence 1367788899888764 6899999988777754 56778999999999999998754221 111111 1123
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+|+.+++ .||+++.
T Consensus 149 ~~~~~~el~~~~--~~~~i~~ 167 (198)
T d2i6ga1 149 FAFKEGELRRYY--EGWDMLK 167 (198)
T ss_dssp CCBCTTHHHHHT--TTSEEEE
T ss_pred CccCHHHHHHHh--CCCeEEE
Confidence 446777888887 5888764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.9e-19 Score=158.86 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=114.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
..++..+.+.++.. ..++.+|||+|||+|.++...+.. +.+|+|+|+|+.|+..++..+++.. ..+.|.+..
T Consensus 38 ~~~~~~~~~~f~~g--~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~-----~~~d~~~~~ 110 (263)
T d2g72a1 38 PWKLRCLAQTFATG--EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP-----GAFNWSMYS 110 (263)
T ss_dssp HHHHHHHHHHHHTS--CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCT-----TCCCCHHHH
T ss_pred hhHHHHHHHHcCCC--CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCc-----ccccchhhh
Confidence 44556676666532 245789999999999988666655 5579999999999999987554321 112221100
Q ss_pred ---cc-------cccccccc----cccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc----hHH
Q psy3185 180 ---DN-------NILTHHQT----MAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN----NIV 241 (298)
Q Consensus 180 ---s~-------~~~~~~~~----r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~----n~~ 241 (298)
+. ....+.+. +.+..-|+... +.+......+++||+|+++|.|+++. +..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~------------~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~ 178 (263)
T d2g72a1 111 QHACLIEGKGECWQDKERQLRARVKRVLPIDVHQP------------QPLGAGSPAPLPADALVSAFCLEAVSPDLASFQ 178 (263)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSS------------STTCSSCSSCSSEEEEEEESCHHHHCSSHHHHH
T ss_pred hhhhhhccccchhhhhHHHhhhhhhccccccccCC------------CccccCCcCcCccCeeeeHHHHHHHccCHHHHH
Confidence 00 00000011 11111122110 11112223467999999999998763 678
Q ss_pred HHHHHHHHhccCCeEEEEeccccccccCCCC--CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 242 SFIETIFNILKPGGIWINLGPLLYHYSNMLN--EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 242 ~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~--~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++++|+++|||||++|..+++.+.+..... -....+|.++++++++++||+++.
T Consensus 179 ~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 179 RALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp HHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 8999999999999999998888665443222 135679999999999999999875
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.76 E-value=7e-18 Score=149.17 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=83.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|+.+..+++.|+ .|+|+|+|+.|+..|+...+..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~--------------------------------- 70 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 70 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc---------------------------------
Confidence 467999999999999999999987 6999999999999988643210
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCc----chHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCA----NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta----~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+.++|...... ..++||+|++.+.+++. +++..++++++++|||||++|.
T Consensus 71 -----~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~ 132 (252)
T d1ri5a_ 71 -----KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 132 (252)
T ss_dssp -----CCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -----CCCcceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence 112468889999866544 35789999998877754 5677899999999999999984
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=1.2e-16 Score=144.18 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=107.0
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
++.+.+.+.. .++.+|||+|||+|.++..+|++ |..|+|+|+|+.|+..++....+ .
T Consensus 41 ~~~~~~~l~l----~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~---~--------------- 98 (280)
T d2fk8a1 41 VDLNLDKLDL----KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS---I--------------- 98 (280)
T ss_dssp HHHHHTTSCC----CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT---S---------------
T ss_pred HHHHHHHcCC----CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHh---h---------------
Confidence 4445544432 35789999999999999999977 99999999999999988874322 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.+ ...+.+...|+.++ +++||.|++.-.+.+. ++...|+++|+++|||||.++.-
T Consensus 99 ------------------~l--~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 99 ------------------DT--NRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp ------------------CC--SSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred ------------------cc--ccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence 01 13566777787665 5799999998877766 57789999999999999999642
Q ss_pred ccccccc---c--------------C----CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 261 GPLLYHY---S--------------N----MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 261 gPl~y~~---~--------------~----~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+. . + .--+....+|.+++.+++++.||++..
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~ 212 (280)
T d2fk8a1 156 SSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPE 212 (280)
T ss_dssp EEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCC
T ss_pred EeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccce
Confidence 1111000 0 0 000233457999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=7.3e-17 Score=143.77 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=103.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
-+++.|.+... ++.+|||+|||+|.++..+++.|.+|+|+|+|+.|+..|+.-... +
T Consensus 109 l~l~~l~~~~~------~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~----n------------- 165 (254)
T d2nxca1 109 LALKALARHLR------PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----N------------- 165 (254)
T ss_dssp HHHHHHHHHCC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH----T-------------
T ss_pred HHHHHHHhhcC------ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHH----c-------------
Confidence 46677776653 467999999999999999999999999999999999999863211 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+.+..+..+|+.+.. +.++||+|+++.+. ..+.++++.+.++|||||++|..|
T Consensus 166 -----------------------~~~~~~~~~d~~~~~-~~~~fD~V~ani~~---~~l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 166 -----------------------GVRPRFLEGSLEAAL-PFGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp -----------------------TCCCEEEESCHHHHG-GGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------CCceeEEeccccccc-cccccchhhhcccc---ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 013456788876653 46799999987644 446778999999999999999666
Q ss_pred cccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 PLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 Pl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+. . ..+++.+.+++.||++++.
T Consensus 219 il~--~-----------~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 219 ILK--D-----------RAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp EEG--G-----------GHHHHHHHHHHTTCEEEEE
T ss_pred cch--h-----------hHHHHHHHHHHCCCEEEEE
Confidence 432 1 1688999999999998754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-16 Score=143.21 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=99.6
Q ss_pred CCCCeEEEecccCcHHHHHHHHc--------CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR--------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQT 189 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~--------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~ 189 (298)
.++.+|||+|||+|.++..|++. +..++|+|+|..|+..++...... .
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~------~------------------ 94 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI------S------------------ 94 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC------C------------------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc------c------------------
Confidence 34568999999999998888654 246899999999999887633210 0
Q ss_pred cccccCCCCCCCCCCCCCeeEEecccccc------ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc-
Q psy3185 190 MAVTFPDINTSDYNDDCDFSMAAGDFLQV------YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP- 262 (298)
Q Consensus 190 r~~~ipd~~~~~~~~~~~~~~~~gDf~~~------~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP- 262 (298)
. .....+.+...++.++ ..++++||+|++++.+++.+++..+|++++++|||||+++...+
T Consensus 95 ------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 95 ------N------LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp ------S------CTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ------c------cccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 0 0112344555555433 23568999999999999999999999999999999998764321
Q ss_pred -c-----ccc--ccCC-CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 263 -L-----LYH--YSNM-LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 263 -l-----~y~--~~~~-~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
- +|. +... .....-.++.+++.+++.+.||....
T Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 163 GSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp TTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred CcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHCCCceEE
Confidence 0 111 0000 11233457899999999999997643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=9.1e-16 Score=138.75 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=111.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.+.. .++.+|||+|||.|.++..+|+. |.+|+|+.+|..++..++..... .
T Consensus 50 k~~~~~~~l~l----~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~---~-------------- 108 (285)
T d1kpga_ 50 KIDLALGKLGL----QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVAN---S-------------- 108 (285)
T ss_dssp HHHHHHTTTTC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT---C--------------
T ss_pred HHHHHHHHcCC----CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHh---h--------------
Confidence 45666665543 46889999999999999998876 99999999999999988774321 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.++ +++||.|++.-.+.+. .|...|+++++++|||||.++.
T Consensus 109 ---------------------g~~~~v~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l 164 (285)
T d1kpga_ 109 ---------------------ENLRSKRVLLAGWEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 164 (285)
T ss_dssp ---------------------CCCSCEEEEESCGGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred ---------------------hhhhhhHHHHhhhhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence 1124788899998776 4789999999877776 6778999999999999999863
Q ss_pred --e---ccccccccCCC----------------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 --L---GPLLYHYSNML----------------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 --~---gPl~y~~~~~~----------------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+ .|...+....+ -+.+.-+|.+++..++++.||+++..
T Consensus 165 ~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~ 223 (285)
T d1kpga_ 165 HTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV 223 (285)
T ss_dssp EEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEE
T ss_pred EEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhccc
Confidence 1 12111100000 01334578999999999999999763
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=1.9e-16 Score=142.42 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=94.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
-.+++|.+.+... .++.+|||+|||+|.++..||+. |..|+|+|+|+.|+..|+.....
T Consensus 13 d~l~~l~~~~~~~---~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~--------------- 74 (281)
T d2gh1a1 13 DYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL--------------- 74 (281)
T ss_dssp HHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHHHHhcc---CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc---------------
Confidence 3566666544211 24679999999999999999985 67899999999999998873221
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ .++.+..+|+.++.. +++||+|++.+++++.+++...+++++++|||||.++
T Consensus 75 -----------------------~~--~~~~f~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~li 128 (281)
T d2gh1a1 75 -----------------------LP--YDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128 (281)
T ss_dssp -----------------------SS--SEEEEEESCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEE
T ss_pred -----------------------cc--ccccccccccccccc-cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEE
Confidence 01 367889999988765 4689999999999999999999999999999999998
Q ss_pred Eecc
Q psy3185 259 NLGP 262 (298)
Q Consensus 259 n~gP 262 (298)
...|
T Consensus 129 i~~~ 132 (281)
T d2gh1a1 129 CFEP 132 (281)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7665
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=1.2e-15 Score=138.36 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=107.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.... .++.+|||+|||.|.++..+|++ |..|+|+++|..++..++..... .
T Consensus 49 k~~~~~~~l~l----~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~---~-------------- 107 (291)
T d1kpia_ 49 KRKLALDKLNL----EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE---V-------------- 107 (291)
T ss_dssp HHHHHHHTTCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH---S--------------
T ss_pred HHHHHHHhcCC----CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHh---h--------------
Confidence 34555555442 36889999999999999999865 99999999999999988774322 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc---------chHHHHHHHHHHhcc
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA---------NNIVSFIETIFNILK 252 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta---------~n~~~yl~~I~~~Lk 252 (298)
.+ ...+.+..+|+.. .+++||.|+|.-.+.+. +|...|+++|+++||
T Consensus 108 -------------------~l--~~~v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk 163 (291)
T d1kpia_ 108 -------------------DS--PRRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP 163 (291)
T ss_dssp -------------------CC--SSCEEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC
T ss_pred -------------------cc--chhhhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC
Confidence 01 1356677777643 46899999998766654 467899999999999
Q ss_pred CCeEEEEe----ccccccccC---C--------------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 253 PGGIWINL----GPLLYHYSN---M--------------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 253 pGG~~In~----gPl~y~~~~---~--------------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|||.++.- ..-.|.... . --+....+|..++...+++.||+++..
T Consensus 164 pgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~ 229 (291)
T d1kpia_ 164 DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY 229 (291)
T ss_dssp TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhccccccccee
Confidence 99998631 111111100 0 001345578999999999999998753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=5.5e-16 Score=139.63 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 76 KVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 76 ~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.......+..+|.......+. .+.+.|.. . +..+|||+|||+|+++..||++|++|+|+|+|+.||.
T Consensus 25 ~~~~~~~~~~~~~~~r~~~~~~----~l~~~l~~-~-------~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~ 92 (292)
T d1xvaa_ 25 EAARVWQLYIGDTRSRTAEYKA----WLLGLLRQ-H-------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLK 92 (292)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHH----HHHHHHHH-T-------TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred hHHHHHHHHhcchhhhHHHHHH----HHHHHhhh-c-------CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHH
Confidence 4455566777788766555443 34444433 1 3469999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecc
Q psy3185 156 ASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCF 232 (298)
Q Consensus 156 ~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~f 232 (298)
.|+........ .... ....+..+||.... +..++||+|++.+
T Consensus 93 ~A~~~~~~~~~--~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~ 137 (292)
T d1xvaa_ 93 YALKERWNRRK--EPAF---------------------------------DKWVIEEANWLTLDKDVPAGDGFDAVICLG 137 (292)
T ss_dssp HHHHHHHHTTT--SHHH---------------------------------HTCEEEECCGGGHHHHSCCTTCEEEEEECS
T ss_pred HHHHHHHhccc--cccc---------------------------------ceeeeeeccccccccccCCCCCceEEEEec
Confidence 98774322100 0000 12334455554432 2357899887643
Q ss_pred -ccc-------CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 233 -FID-------CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 233 -fid-------ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+. ...++..+|++++++|||||++|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 138 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp SCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 222 235688899999999999999973
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.9e-16 Score=138.84 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=86.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.+++.|....|. ++.+|||+|||+|.++..|++.+ ..|+|+|+|+.|+..|+...
T Consensus 72 ~~~~~l~~~~~~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------------ 128 (268)
T d1p91a_ 72 AIVAQLRERLDD-----KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------ 128 (268)
T ss_dssp HHHHHHHHHSCT-----TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------------
T ss_pred HHHHHHHHhcCC-----CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------------------
Confidence 466677777763 47799999999999999999985 57999999999998876510
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.++.+..+|..+++..+++||+|++.+.++. +++++|+|||||+++.
T Consensus 129 --------------------------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~ 175 (268)
T d1p91a_ 129 --------------------------PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVIT 175 (268)
T ss_dssp --------------------------TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEE
T ss_pred --------------------------ccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEE
Confidence 2577899999999888999999998876654 5789999999999986
Q ss_pred ecc
Q psy3185 260 LGP 262 (298)
Q Consensus 260 ~gP 262 (298)
..|
T Consensus 176 ~~p 178 (268)
T d1p91a_ 176 ATP 178 (268)
T ss_dssp EEE
T ss_pred Eee
Confidence 654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.64 E-value=1.8e-15 Score=133.82 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=104.8
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+.+.+.++.. +..+|||+|||+|.++..++++. ..++++|+ +.|+..++..+...
T Consensus 70 ~~~~~~~d~~----~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~------------------ 126 (253)
T d1tw3a2 70 DAPAAAYDWT----NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE------------------ 126 (253)
T ss_dssp HHHHHHSCCT----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT------------------
T ss_pred HHHHhhcCCc----cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh------------------
Confidence 4455666642 45699999999999999999984 57999998 56888777633210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
....+++++.|||.+. .+.+||+|++.++++.. ++....|++++++|||||.++..
T Consensus 127 --------------------~~~~rv~~~~~D~~~~--~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 127 --------------------GLSDRVDVVEGDFFEP--LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp --------------------TCTTTEEEEECCTTSC--CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred --------------------hcccchhhccccchhh--cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence 0114789999998764 34679999998888755 34568899999999999988754
Q ss_pred ccccccccCCC------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 261 GPLLYHYSNML------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 261 gPl~y~~~~~~------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
........... .....+.|.+|+.++++++||++++
T Consensus 185 e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~ 232 (253)
T d1tw3a2 185 ERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 232 (253)
T ss_dssp ECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred eccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence 32111100000 0123457899999999999999865
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=6e-16 Score=135.80 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=106.3
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhh---CCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILAR---FPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASN 158 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~---~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~ 158 (298)
-+|.|++... .+...|..- +|. .++.+|||+|||+|..+..||+.+ ..|+|+|+|+.|+..++
T Consensus 48 e~r~w~p~rs--------klaA~i~~gl~~l~i----kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~ 115 (230)
T d1g8sa_ 48 EYRIWNPNKS--------KLAAAIIKGLKVMPI----KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL 115 (230)
T ss_dssp EEEECCTTTC--------HHHHHHHTTCCCCCC----CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH
T ss_pred eeeeECCCcc--------HHHHHHHhhHHhCCC----CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH
Confidence 4888987542 244555443 332 467899999999999999999985 47999999999999877
Q ss_pred HHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCc
Q psy3185 159 FILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCA 237 (298)
Q Consensus 159 ~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta 237 (298)
.... . ..++..+.+|...... .+..+|+++....+...
T Consensus 116 ~~a~---~--------------------------------------~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~ 154 (230)
T d1g8sa_ 116 DACA---E--------------------------------------RENIIPILGDANKPQEYANIVEKVDVIYEDVAQP 154 (230)
T ss_dssp HHTT---T--------------------------------------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST
T ss_pred HHHh---h--------------------------------------hcccceEEEeeccCcccccccceeEEeeccccch
Confidence 6321 1 1245555666544332 34567766655556667
Q ss_pred chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 238 NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 238 ~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+...++.++++.|||||.++..-. ....+ .......+.+++.+.+++.||+++..
T Consensus 155 ~~~~~~l~~~~r~LKpgG~~~i~~k--~~~~d--~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 155 NQAEILIKNAKWFLKKGGYGMIAIK--ARSID--VTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEEE--GGGTC--SSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHhcccCceEEEEee--ccccC--CCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 7888999999999999999874311 11111 11112234678889999999998753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=8.8e-16 Score=133.96 Aligned_cols=149 Identities=14% Similarity=0.037 Sum_probs=100.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.|+.+.+.+... +++.+|||+|||+|..+..+|+.+ .+|+|+|+|+.|+..|+..... .
T Consensus 40 ~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~---~------------ 99 (229)
T d1zx0a1 40 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR---Q------------ 99 (229)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG---C------------
T ss_pred HHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhh---c------------
Confidence 467777776654 246799999999999999999985 5799999999999999873211 0
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccc--cCCCceeEEE-----ecccccCcchHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVA-----TCFFIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~-----t~ffidta~n~~~yl~~I~~~Lk 252 (298)
..++.+..+|+.... .++++||.|+ +.+.+.+..+...++++++++||
T Consensus 100 -------------------------~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lk 154 (229)
T d1zx0a1 100 -------------------------THKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK 154 (229)
T ss_dssp -------------------------SSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE
T ss_pred -------------------------ccccccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcC
Confidence 024455566655432 3467888775 45667778888999999999999
Q ss_pred CCeEEEEeccccccccCCCC-CCccCCCHHHHHHHHHhCCCEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLN-EDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~-~~~~~ls~eEl~~~~~~~GF~i 294 (298)
|||+++...+.-+....... ........+.+...+.+.||+.
T Consensus 155 pGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~ 197 (229)
T d1zx0a1 155 PGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 197 (229)
T ss_dssp EEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCee
Confidence 99999854332111100000 0111123456666777889974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.60 E-value=1.1e-14 Score=129.18 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=105.6
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..+.+.++.. ...+|||+|||+|.++..|+++ +..++++|+ +.|+..++..+...
T Consensus 71 ~~~~~~~d~~----~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~------------------ 127 (256)
T d1qzza2 71 EAPADAYDWS----AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA------------------ 127 (256)
T ss_dssp HHHHHTSCCT----TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------------------
T ss_pred HHHHhcCCCc----cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc------------------
Confidence 3344455532 3468999999999999999998 568999998 67887777643321
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
....++.++.+||.+. .+.+||+|++.+.++.. ++....|++|++.|||||.++.+
T Consensus 128 --------------------~~~~ri~~~~~d~~~~--~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 128 --------------------GLADRVTVAEGDFFKP--LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp --------------------TCTTTEEEEECCTTSC--CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CCcceeeeeeeecccc--ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence 1124788999998763 24569999999888755 34578899999999999998865
Q ss_pred ccccccccCCC-------------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 261 GPLLYHYSNML-------------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 261 gPl~y~~~~~~-------------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+......... .....+.|.+|++++++++||++++.
T Consensus 186 d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 186 DRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp ECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred EeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 54321110000 01245678999999999999999764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.59 E-value=9.5e-15 Score=123.36 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=94.5
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+++.+|||+|||+|.++.++|+.+.+|+|+|+|+.|+..++.-..+ .
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~---~------------------------------ 78 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR---H------------------------------ 78 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH---T------------------------------
T ss_pred CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHH---c------------------------------
Confidence 4678999999999999999999999999999999999999873321 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
.+ ..++.+..||+.+...+...||+|++.. ...++.++++.+.+.|||||.++...+. .+
T Consensus 79 ---gl--~~~v~~~~gda~~~~~~~~~~D~v~~~~---~~~~~~~~~~~~~~~LkpgG~lvi~~~~-~e----------- 138 (186)
T d1l3ia_ 79 ---GL--GDNVTLMEGDAPEALCKIPDIDIAVVGG---SGGELQEILRIIKDKLKPGGRIIVTAIL-LE----------- 138 (186)
T ss_dssp ---TC--CTTEEEEESCHHHHHTTSCCEEEEEESC---CTTCHHHHHHHHHHTEEEEEEEEEEECB-HH-----------
T ss_pred ---CC--CcceEEEECchhhcccccCCcCEEEEeC---ccccchHHHHHHHHHhCcCCEEEEEeec-cc-----------
Confidence 01 1378899999998877778999998654 4456788999999999999988743221 11
Q ss_pred CCHHHHHHHHHhCCCE
Q psy3185 278 PSYEVVKQVIQGLGFV 293 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~ 293 (298)
+..++.+.+.+.||.
T Consensus 139 -~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 139 -TKFEAMECLRDLGFD 153 (186)
T ss_dssp -HHHHHHHHHHHTTCC
T ss_pred -cHHHHHHHHHHcCCC
Confidence 145566777777774
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=1.3e-14 Score=123.18 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=87.0
Q ss_pred HHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccc
Q psy3185 106 EILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILT 185 (298)
Q Consensus 106 ~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~ 185 (298)
.|.+.++. .++.+|||+|||+|.++..+|+.+.+|+|+|+|+.|+..++..++..
T Consensus 43 lLi~~l~~----~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~--------------------- 97 (194)
T d1dusa_ 43 ILVENVVV----DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN--------------------- 97 (194)
T ss_dssp HHHHHCCC----CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT---------------------
T ss_pred HHHHhCCc----CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHh---------------------
Confidence 34555543 35779999999999999999999999999999999999998743320
Q ss_pred cccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch-HHHHHHHHHHhccCCeEEEE
Q psy3185 186 HHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN-IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 186 ~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n-~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.+..+|+.+. .++++||+|++...++...+ +..+++.+.++|||||+++.
T Consensus 98 ---------------~l-~~~~i~~~~~d~~~~-~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 98 ---------------NL-DNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp ---------------TC-TTSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------CC-ccceEEEEEcchhhh-hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence 00 113678899998774 45789999999766665555 46799999999999998753
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=6.4e-14 Score=128.30 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=80.3
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|++|. .|+|+|.|+ |+..++......
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~---------------------------------- 83 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELN---------------------------------- 83 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHT----------------------------------
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHh----------------------------------
Confidence 67999999999999999999996 699999996 666665532220
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.++.+|..++..++++||+|++.. ++.....+...+..+.++|||||++|
T Consensus 84 ----~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 84 ----GFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ----TCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ----CccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 012478899999999877789999998854 45566678889999999999999987
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-13 Score=125.55 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+.|. .|+|+|.|+.|..+.+.+...
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~---------------------------------- 80 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN---------------------------------- 80 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh----------------------------------
Confidence 367999999999999999999996 699999999997665543211
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccc---ccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF---IDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff---idta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.+..+|..++..+.++||+|++..+ +.....+..++....++|||||++|
T Consensus 81 -----~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 81 -----KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp -----TCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 0114788999999998777799999998543 3344456678888899999999987
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=9.2e-14 Score=119.86 Aligned_cols=101 Identities=16% Similarity=0.023 Sum_probs=74.5
Q ss_pred CCCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.++.+|||+|||+|..+..||+. + -.|+|+|+|+.|+..++...++
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-------------------------------- 102 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-------------------------------- 102 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------------------------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--------------------------------
Confidence 46789999999999999999986 2 3799999999999988764321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc-ccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF-IDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff-idta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.++.+|..........+|.|..+|. +....+...++.+++++|||||+++.
T Consensus 103 ---------~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 103 ---------RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp ---------CSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------cCCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEE
Confidence 03667777777665444444444333221 33445677899999999999999974
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=7.5e-14 Score=124.60 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=104.9
Q ss_pred HhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHH
Q psy3185 85 VRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 85 ~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l 161 (298)
..||...-...-+..|+.-+..|...... .++.+|||.|||+|.++..||+. | ..|+++|+++.|+..|+.-+
T Consensus 66 ~~~~~~~~~r~tqiiypkD~s~Ii~~l~i----~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~ 141 (264)
T d1i9ga_ 66 LVDYVMSMPRGPQVIYPKDAAQIVHEGDI----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 141 (264)
T ss_dssp HHHHHTTSCSCSCCCCHHHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhhccCCccccchHHHHHHHHHhCC----CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhh
Confidence 34566555445567888888988888764 46889999999999999999987 4 57999999999999988733
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHH
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIV 241 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~ 241 (298)
..... ....++.+..+|+.+...++++||+|+. | .+++.
T Consensus 142 ~~~~~------------------------------------~~~~nv~~~~~d~~~~~~~~~~fDaV~l----d-lp~P~ 180 (264)
T d1i9ga_ 142 SGCYG------------------------------------QPPDNWRLVVSDLADSELPDGSVDRAVL----D-MLAPW 180 (264)
T ss_dssp HHHHT------------------------------------SCCTTEEEECSCGGGCCCCTTCEEEEEE----E-SSCGG
T ss_pred hhhcc------------------------------------CCCceEEEEecccccccccCCCcceEEE----e-cCCHH
Confidence 22100 0014788999999988777899999864 3 46778
Q ss_pred HHHHHHHHhccCCeEEEEeccc
Q psy3185 242 SFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 242 ~yl~~I~~~LkpGG~~In~gPl 263 (298)
++++.+.++|||||.++.+-|-
T Consensus 181 ~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 181 EVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp GGHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHhccCCCCEEEEEeCc
Confidence 9999999999999999977663
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=9.5e-14 Score=126.58 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=78.8
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|++|. .|+|+|.|+.|..+.+. ... +
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~-~~~----n------------------------------ 78 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKI-VKA----N------------------------------ 78 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHH-HHH----T------------------------------
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhH-HHH----h------------------------------
Confidence 56899999999999999999995 69999999866544433 211 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEeccc---ccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF---IDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff---idta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.+ ..++.+..||..++..+.++||+|++..+ +.....+..++..+.++|||||.+|
T Consensus 79 --~~--~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 79 --KL--DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp --TC--TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --CC--ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 01 14688999999998777799999988644 4444568889999999999999987
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=2.2e-13 Score=121.66 Aligned_cols=148 Identities=17% Similarity=0.134 Sum_probs=108.2
Q ss_pred hhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 87 dWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
||...-...-+..|+.-+..+...+.. +++.+|||+|||+|.++..||+. +..|+|+|+|+.|+..|+..+.+
T Consensus 75 d~~~~~~r~~qiiypkd~~~Ii~~l~i----~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~ 150 (266)
T d1o54a_ 75 DEIMNMKRRTQIVYPKDSSFIAMMLDV----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 150 (266)
T ss_dssp HHHHTCCC-CCCCCHHHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHhhccCCccccchHHHHHHHHhhCC----CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 555444344467888888888877764 46889999999999999999986 35899999999999999874432
Q ss_pred hhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHH
Q psy3185 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSF 243 (298)
Q Consensus 164 ~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~y 243 (298)
.. + ..++.+..+|+.... +...||.|+. | .+++.++
T Consensus 151 ~g------------------------------------~--~~~v~~~~~d~~~~~-~~~~~D~V~~----d-~p~p~~~ 186 (266)
T d1o54a_ 151 WG------------------------------------L--IERVTIKVRDISEGF-DEKDVDALFL----D-VPDPWNY 186 (266)
T ss_dssp TT------------------------------------C--GGGEEEECCCGGGCC-SCCSEEEEEE----C-CSCGGGT
T ss_pred hc------------------------------------c--ccCcEEEeccccccc-cccceeeeEe----c-CCCHHHH
Confidence 10 0 135666777764443 4577888753 3 4678899
Q ss_pred HHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 244 IETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 244 l~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
++.+.++|||||.++.+.|..- ..+++.+.+++.||..+
T Consensus 187 l~~~~~~LKpGG~lv~~~P~~~-------------Qv~~~~~~l~~~gF~~i 225 (266)
T d1o54a_ 187 IDKCWEALKGGGRFATVCPTTN-------------QVQETLKKLQELPFIRI 225 (266)
T ss_dssp HHHHHHHEEEEEEEEEEESSHH-------------HHHHHHHHHHHSSEEEE
T ss_pred HHHHHhhcCCCCEEEEEeCccc-------------HHHHHHHHHHHCCceeE
Confidence 9999999999999997766321 14567777888899754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.45 E-value=1.8e-13 Score=121.23 Aligned_cols=136 Identities=18% Similarity=0.103 Sum_probs=92.6
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPW 175 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~ 175 (298)
.|+.=+..+.....- +++.+|||+|||+|.++..||+. | ..|+++|+++.|+..|+.-+...
T Consensus 69 iypkD~~~Ii~~l~i----~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~----------- 133 (250)
T d1yb2a1 69 ISEIDASYIIMRCGL----RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF----------- 133 (250)
T ss_dssp ------------CCC----CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----------
T ss_pred cCHHHHHHHHHHcCC----CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----------
Confidence 444444455544432 46789999999999999999986 3 57999999999999988733210
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCe
Q psy3185 176 VQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 176 ~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG 255 (298)
....++.+..+|+.+.. .++.||+|+. | .++..++++.+.++|||||
T Consensus 134 ---------------------------~~~~nv~~~~~Di~~~~-~~~~fD~V~l----d-~p~p~~~l~~~~~~LKpGG 180 (250)
T d1yb2a1 134 ---------------------------YDIGNVRTSRSDIADFI-SDQMYDAVIA----D-IPDPWNHVQKIASMMKPGS 180 (250)
T ss_dssp ---------------------------SCCTTEEEECSCTTTCC-CSCCEEEEEE----C-CSCGGGSHHHHHHTEEEEE
T ss_pred ---------------------------cCCCceEEEEeeeeccc-ccceeeeeee----c-CCchHHHHHHHHHhcCCCc
Confidence 11247889999998874 4678999874 2 3556688999999999999
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+++.+.|..- . .+++.+.+++.||..+
T Consensus 181 ~lv~~~P~i~--Q-----------v~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 181 VATFYLPNFD--Q-----------SEKTVLSLSASGMHHL 207 (250)
T ss_dssp EEEEEESSHH--H-----------HHHHHHHSGGGTEEEE
T ss_pred eEEEEeCCcC--h-----------HHHHHHHHHHCCCcee
Confidence 9997766310 0 3445555667888654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=5.9e-13 Score=114.91 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=84.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+.+.+.. .++.+|||+|||+|.++..||+. | ..|+++|.++.|+..|+..+.+..
T Consensus 63 ~~a~~l~~l~l----~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-------------- 124 (213)
T d1dl5a1 63 LMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-------------- 124 (213)
T ss_dssp HHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT--------------
T ss_pred hhHHHHHhhhc----cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc--------------
Confidence 44445555442 35789999999999999999986 3 579999999999999987554310
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.+..||..+.++..++||+|++.+.+++.+ +.+.+.|||||.+|.
T Consensus 125 -------------------------~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 125 -------------------------IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIV 173 (213)
T ss_dssp -------------------------CCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEE
T ss_pred -------------------------ccccccccCchHHccccccchhhhhhhccHHHhH------HHHHHhcCCCcEEEE
Confidence 1377788999888777778999999988887664 356788999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.8e-13 Score=123.36 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=88.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.+..+.+.+.. .++.+|||+|||+|.++..+|+. |. .|+|+|+|+.|+..|+......... .
T Consensus 139 ~~~~~~~~~~l----~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~--~---------- 202 (328)
T d1nw3a_ 139 LVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW--M---------- 202 (328)
T ss_dssp HHHHHHHHSCC----CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHH--H----------
T ss_pred HHHHHHHHcCC----CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH--h----------
Confidence 44555555442 35779999999999999999976 65 5999999999999998765432110 0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCcee--EEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWD--CVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD--~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+.. .+ ...++.+..|||.+....+..+| +|+...++ ..+++...+.++++.|||||.+|
T Consensus 203 ---------~~~---g~------~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv 263 (328)
T d1nw3a_ 203 ---------KWY---GK------KHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIV 263 (328)
T ss_dssp ---------HHH---TC------CCCCEEEEECCTTSHHHHHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEE
T ss_pred ---------hhc---cc------cCCceEEEECcccccccccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEE
Confidence 000 00 11479999999998866555554 55543333 34788899999999999999999
Q ss_pred Eecc
Q psy3185 259 NLGP 262 (298)
Q Consensus 259 n~gP 262 (298)
..-|
T Consensus 264 ~~~~ 267 (328)
T d1nw3a_ 264 SSKP 267 (328)
T ss_dssp ESSC
T ss_pred Eecc
Confidence 6543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=1.2e-12 Score=112.45 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=78.4
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+..|||+|||+|..+..+|++. ..++|+|.|..|+..+...... .
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~---~------------------------------ 76 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD---S------------------------------ 76 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---S------------------------------
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH---H------------------------------
Confidence 4589999999999999999984 6799999999999887663221 0
Q ss_pred CCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcchH--------HHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANNI--------VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n~--------~~yl~~I~~~LkpGG~~In 259 (298)
. ..|+.++.||+..+. .+++++|.|...|-.-+.... .++++.++++|||||.+..
T Consensus 77 ---~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 77 ---E---AQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp ---C---CSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred ---h---ccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence 0 148999999988764 467899998876644322211 4799999999999999864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.37 E-value=2.6e-12 Score=111.89 Aligned_cols=95 Identities=22% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.++.+|||+|||+|.++..||+.+.+|+++|.++.++..|+..+.+
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~---------------------------------- 114 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY---------------------------------- 114 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT----------------------------------
T ss_pred cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc----------------------------------
Confidence 3578999999999999999999999999999999999988763221
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.+..||....+++.+.||+|+....+++.+ +.+.+.|||||.+|.
T Consensus 115 -------~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 115 -------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMIL 163 (224)
T ss_dssp -------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred -------ccccccccCchhhcchhhhhHHHHHhhcchhhhh------HHHHHhcCCCCEEEE
Confidence 1478899999887766778999988776666554 345678999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.5e-12 Score=113.25 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
.++.+|||+|||+|.++..||+. ...|+|+|.++.|+..|+..+.+..-. .
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~-~------------------------- 128 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-L------------------------- 128 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-H-------------------------
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-c-------------------------
Confidence 35789999999999999999986 458999999999999998755431100 0
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..||....+++.+.||+|+....++..+ +.+.+.|||||++|.
T Consensus 129 --------~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 129 --------LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLIL 179 (224)
T ss_dssp --------HHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred --------ccccceEEEEeecccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEE
Confidence 001367888999888877788999999888777664 357789999999975
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=4.3e-12 Score=110.61 Aligned_cols=124 Identities=19% Similarity=0.107 Sum_probs=82.4
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~ 160 (298)
=+|.|++.. . .+...|..-+..- .-.++.+|||+|||+|.++..||+. | ..|+|+|+|+.|+..++..
T Consensus 47 e~R~w~p~r----S----Klaa~i~~~l~~l-~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~ 117 (227)
T d1g8aa_ 47 EYRIWNPNR----S----KLGAAIMNGLKNF-PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI 117 (227)
T ss_dssp EEEECCTTT----C----HHHHHHHTTCCCC-CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred eEEEECCCc----c----HHHHHHHcccccc-ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence 489998642 2 1333343322110 1146889999999999999999987 4 5799999999999988763
Q ss_pred HhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCc
Q psy3185 161 LNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCA 237 (298)
Q Consensus 161 l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta 237 (298)
.+. ..++..+.+|.... ....+.+|+|+..+ ...
T Consensus 118 a~~-----------------------------------------~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~--~~~ 154 (227)
T d1g8aa_ 118 VEE-----------------------------------------RRNIVPILGDATKPEEYRALVPKVDVIFEDV--AQP 154 (227)
T ss_dssp HSS-----------------------------------------CTTEEEEECCTTCGGGGTTTCCCEEEEEECC--CST
T ss_pred HHh-----------------------------------------cCCceEEEEECCCcccccccccceEEEEEEc--ccc
Confidence 221 02333444444322 22346788776543 234
Q ss_pred chHHHHHHHHHHhccCCeEEEE
Q psy3185 238 NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 238 ~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+...+++++++.|||||+++.
T Consensus 155 ~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 155 TQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp THHHHHHHHHHHHEEEEEEEEE
T ss_pred chHHHHHHHHHHhcccCCeEEE
Confidence 5667899999999999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.1e-12 Score=115.67 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=93.5
Q ss_pred hhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhh
Q psy3185 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 87 dWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
||...-...-+..|+.=+..+...+.. .++.+|||+|||+|.++..||+. | ..|+++|+++.|+..|+.-+.+
T Consensus 70 d~~~~~~r~tqiiypkD~~~Il~~l~i----~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~ 145 (324)
T d2b25a1 70 DYVVLMKRGTAITFPKDINMILSMMDI----NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145 (324)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHTC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccccHHHHHHHhCC----CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence 455433333345677766666666543 36889999999999999999986 4 4799999999999998874332
Q ss_pred hhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchHH
Q psy3185 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNIV 241 (298)
Q Consensus 164 ~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~~ 241 (298)
.... . .+.... ....++.+..+|+.+... .++.||+|+. | .++..
T Consensus 146 ~~~~--~----------------------~~~~~~----~~~~nv~~~~~di~~~~~~~~~~~fD~V~L----D-~p~P~ 192 (324)
T d2b25a1 146 WRDS--W----------------------KLSHVE----EWPDNVDFIHKDISGATEDIKSLTFDAVAL----D-MLNPH 192 (324)
T ss_dssp HHHH--H----------------------TTTCSS----CCCCCEEEEESCTTCCC-------EEEEEE----C-SSSTT
T ss_pred hhhh--h----------------------hhhhhh----ccccceeEEecchhhcccccCCCCcceEee----c-CcCHH
Confidence 1100 0 000000 112588999999877643 3578998863 4 35566
Q ss_pred HHHHHHHHhccCCeEEEEecc
Q psy3185 242 SFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 242 ~yl~~I~~~LkpGG~~In~gP 262 (298)
++|+.+.++|||||+++.+-|
T Consensus 193 ~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 193 VTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp TTHHHHGGGEEEEEEEEEEES
T ss_pred HHHHHHHHhccCCCEEEEEeC
Confidence 799999999999999997666
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.28 E-value=1.5e-11 Score=105.32 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=76.1
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+..|||+|||+|..+.++|+. ...++|+|+|..|+..+.....+ .
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~---~------------------------------ 78 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE---V------------------------------ 78 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---H------------------------------
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh---h------------------------------
Confidence 468999999999999999998 46799999999999877552221 0
Q ss_pred CCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcch--------HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANN--------IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n--------~~~yl~~I~~~LkpGG~~In 259 (298)
. -.|+.+..+|+.++. .+++++|.|...|---+... -.++++.++++|||||.+..
T Consensus 79 ---~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i 144 (204)
T d1yzha1 79 ---G---VPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 144 (204)
T ss_dssp ---C---CSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred ---c---cccceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence 0 137889999987764 35788998876553222111 15899999999999999864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=2.5e-11 Score=114.06 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=81.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+.+..+.+.+.. .++.+|||+|||+|+++..+|.. |. .|+|+|+|+.|+..|+......... .. -|.
T Consensus 203 ~~i~~Il~~l~L----kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~--~~--~~g--- 271 (406)
T d1u2za_ 203 NFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR--CK--LYG--- 271 (406)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH--HH--HTT---
T ss_pred HHHHHHHHHhCC----CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh--hh--hhc---
Confidence 345555555542 35779999999999999999987 65 6999999999999998854432110 00 000
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeE-EeccccccccCC---CceeEEEecccccCcchHHHHHHHHHHhccCCe
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSM-AAGDFLQVYVHP---NKWDCVATCFFIDCANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~-~~gDf~~~~~~~---~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG 255 (298)
.. .....+ ..++|.+....+ ...|+|...-++ ..+++...|.++++.|||||
T Consensus 272 -----------------~~------~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~-f~~~l~~~L~ei~r~LKPGG 327 (406)
T d1u2za_ 272 -----------------MR------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGC 327 (406)
T ss_dssp -----------------BC------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTC
T ss_pred -----------------cc------cccceeeeeechhhccccccccccceEEEEeccc-CchHHHHHHHHHHHhcCCCc
Confidence 00 012222 345554432211 345666654333 45788999999999999999
Q ss_pred EEEEecc
Q psy3185 256 IWINLGP 262 (298)
Q Consensus 256 ~~In~gP 262 (298)
.+|...+
T Consensus 328 rIVs~~~ 334 (406)
T d1u2za_ 328 KIISLKS 334 (406)
T ss_dssp EEEESSC
T ss_pred EEEEecc
Confidence 9997543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.6e-10 Score=100.12 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=88.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|-++..+|.. ...|+|+|+|+..+..|+.-.++.
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~-------------------------------- 155 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL-------------------------------- 155 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH--------------------------------
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh--------------------------------
Confidence 4679999999999999999986 468999999999999988622210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEec-ccccCc------------------------chHHHHHHHHHHhc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDCA------------------------NNIVSFIETIFNIL 251 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidta------------------------~n~~~yl~~I~~~L 251 (298)
.+ .++.+..+|+.+.. ..++||+|+|+ -+|.+. .-....++...++|
T Consensus 156 ----~~---~~v~~~~~d~~~~~-~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L 227 (274)
T d2b3ta1 156 ----AI---KNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 227 (274)
T ss_dssp ----TC---CSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred ----Cc---ccceeeeccccccc-CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhc
Confidence 01 26889999987753 35799999987 222211 12345777888899
Q ss_pred cCCeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCE
Q psy3185 252 KPGGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 252 kpGG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~ 293 (298)
+|||.++- +|+ . ..+++.+++++.||.
T Consensus 228 ~~~G~l~lEig~-----~----------q~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 228 VSGGFLLLEHGW-----Q----------QGEAVRQAFILAGYH 255 (274)
T ss_dssp EEEEEEEEECCS-----S----------CHHHHHHHHHHTTCT
T ss_pred CCCCEEEEEECc-----h----------HHHHHHHHHHHCCCC
Confidence 99998873 222 1 157899999999996
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.15 E-value=9.1e-11 Score=101.78 Aligned_cols=101 Identities=22% Similarity=0.191 Sum_probs=78.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc----C----CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----G----YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTM 190 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G----~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r 190 (298)
++.+||++|||+|.++.-||+. | .+|+++|.+..++..|+..+++.... .
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-~--------------------- 137 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-M--------------------- 137 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-H---------------------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-h---------------------
Confidence 5789999999999999888876 3 47999999999999988755431100 0
Q ss_pred ccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 191 AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 191 ~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..||..+.+.+.+.||+|+....++..++ .+.+.|||||++|.
T Consensus 138 ------------~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 138 ------------LDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIV 188 (223)
T ss_dssp ------------HHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEE
T ss_pred ------------cCccEEEEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEE
Confidence 0013788999999888777889999988877776653 45689999999974
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.13 E-value=2.1e-10 Score=98.90 Aligned_cols=97 Identities=19% Similarity=0.074 Sum_probs=78.8
Q ss_pred CCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.++.+||++|||+|.++.-||+. |..|+++|.++.|+..|+..+.+..
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g------------------------------- 125 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG------------------------------- 125 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT-------------------------------
T ss_pred CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC-------------------------------
Confidence 35789999999999999999987 8789999999999999988654310
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..|+.+..||..+..+..+.||+|+..-.++..+. .+.+.|||||.+|.
T Consensus 126 --------~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 126 --------VKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLII 174 (215)
T ss_dssp --------CCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEE
T ss_pred --------CceeEEEECccccCCcccCcceeEEeecccccCCH------HHHHhcCCCCEEEE
Confidence 14889999999887777899999887766666543 24567999999974
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=2.9e-10 Score=100.71 Aligned_cols=127 Identities=19% Similarity=0.105 Sum_probs=91.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|++|. +|+|+|+|+.++..++.-... +
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~----n----------------------------- 153 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL----N----------------------------- 153 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHH----h-----------------------------
Confidence 367999999999999999999985 899999999999887752211 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
.+ ...+.+..||..++. ..+.||.|+.. ..+.-.++++...++|||||++.. |.+... .....
T Consensus 154 ---~l--~~~v~~~~~D~~~~~-~~~~~D~Ii~~----~p~~~~~~l~~a~~~l~~gG~lh~-----~~~~~~--~~~~~ 216 (260)
T d2frna1 154 ---KV--EDRMSAYNMDNRDFP-GENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHY-----HNTVPE--KLMPR 216 (260)
T ss_dssp ---TC--TTTEEEECSCTTTCC-CCSCEEEEEEC----CCSSGGGGHHHHHHHEEEEEEEEE-----EEEEEG--GGTTT
T ss_pred ---CC--CceEEEEEcchHHhc-cCCCCCEEEEC----CCCchHHHHHHHHhhcCCCCEEEE-----Eecccc--ccchh
Confidence 01 136888999998875 46889988753 223345678888899999996531 222110 11223
Q ss_pred CCHHHHHHHHHhCCCEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~ 295 (298)
...+.+.++....||++.
T Consensus 217 ~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 217 EPFETFKRITKEYGYDVE 234 (260)
T ss_dssp TTHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHcCCceE
Confidence 346778889999999875
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=1.8e-10 Score=104.91 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=83.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||++||+|.++..+|+.|.+|+++|.|..|+..++.-+.. +
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~----n------------------------------ 190 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N------------------------------ 190 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHH----c------------------------------
Confidence 467999999999999999998788899999999999998873321 0
Q ss_pred CCCCCCCCCeeEEeccccccc----cCCCceeEEEec---ccccC------cchHHHHHHHHHHhccCCeEEEEeccccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATC---FFIDC------ANNIVSFIETIFNILKPGGIWINLGPLLY 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~---ffidt------a~n~~~yl~~I~~~LkpGG~~In~gPl~y 265 (298)
.+ .++.++.+|..++. ...++||+|++- |.... .....+.+....++|||||+++-.
T Consensus 191 --gl---~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~----- 260 (318)
T d1wxxa2 191 --GL---GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA----- 260 (318)
T ss_dssp --TC---TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE-----
T ss_pred --CC---CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE-----
Confidence 01 36778888876642 245799999862 22211 122345778888999999998732
Q ss_pred cccCCCCCCccCCCHHHHHHHHH
Q psy3185 266 HYSNMLNEDSIEPSYEVVKQVIQ 288 (298)
Q Consensus 266 ~~~~~~~~~~~~ls~eEl~~~~~ 288 (298)
. -+..++.+++.+++.
T Consensus 261 -s------cs~~~~~~~f~~~v~ 276 (318)
T d1wxxa2 261 -S------CSHHMTEPLFYAMVA 276 (318)
T ss_dssp -E------CCTTSCHHHHHHHHH
T ss_pred -e------CCcccCHHHHHHHHH
Confidence 2 133456666655543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.05 E-value=2.2e-10 Score=93.20 Aligned_cols=99 Identities=20% Similarity=0.136 Sum_probs=72.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++.+.+.+|. +|+++|.++.++..++.-+...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~--------------------------------- 60 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 60 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhc---------------------------------
Confidence 367999999999999999999997 6999999999998887632210
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCc---chHHHHHHHHH--HhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCA---NNIVSFIETIF--NILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta---~n~~~yl~~I~--~~LkpGG~~In 259 (298)
....++.+..+|...+. ...++||+|+. |.. ......++.|. ++|+|||+.|.
T Consensus 61 -----~~~~~~~ii~~D~~~~l~~~~~~fDiIf~----DPPy~~~~~~~~l~~i~~~~~L~~~g~iii 119 (152)
T d2esra1 61 -----KAENRFTLLKMEAERAIDCLTGRFDLVFL----DPPYAKETIVATIEALAAKNLLSEQVMVVC 119 (152)
T ss_dssp -----TCGGGEEEECSCHHHHHHHBCSCEEEEEE----CCSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----ccccchhhhcccccccccccccccceeEe----chhhccchHHHHHHHHHHCCCcCCCeEEEE
Confidence 01136888999987753 34689999854 421 22345566654 47999999873
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=4.3e-10 Score=93.36 Aligned_cols=42 Identities=21% Similarity=0.089 Sum_probs=38.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~ 160 (298)
++.+|||+|||+|.++.+.+.+|.+|+++|.|+.|+..++.-
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N 82 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN 82 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH
Confidence 367999999999999999999999999999999999988763
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=1.4e-09 Score=98.96 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=75.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|..+..+|+.|. +|+++|.|+.++..++.-+.. +
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~----n----------------------------- 191 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------------- 191 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHH----c-----------------------------
Confidence 367999999999999999999986 699999999999988762211 0
Q ss_pred CCCCCCCCCCeeEEeccccccc----cCCCceeEEEec--ccccCcc-------hHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATC--FFIDCAN-------NIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~--ffidta~-------n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++++..||+.+.. ...++||+|++- .|..... +..+.+....++|||||+++-
T Consensus 192 ---gl--~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~ 261 (324)
T d2as0a2 192 ---GV--EDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 261 (324)
T ss_dssp ---TC--GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---CC--CccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 01 136778999976642 245799999872 3433322 334567788889999999873
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.00 E-value=2.4e-09 Score=93.75 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHH
Q psy3185 77 VQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFML 154 (298)
Q Consensus 77 v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml 154 (298)
....+.+.+..++.. ..+.+.+.++.- ....+|||+|||+|.++..|+++ +-+++..|+.. ++
T Consensus 53 ~~~~F~~aM~~~s~~-----------~~~~l~~~~~~f---~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi 117 (244)
T d1fp1d2 53 MNQIFNKSMVDVCAT-----------EMKRMLEIYTGF---EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI 117 (244)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHCCTT---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHhcccc---cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh
Confidence 334566666666542 344455555511 23569999999999999999988 46788888743 21
Q ss_pred HHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccc
Q psy3185 155 FASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFI 234 (298)
Q Consensus 155 ~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffi 234 (298)
. .. ....++.+..|||.+-. + ..|+|+....+
T Consensus 118 ~-------~~--------------------------------------~~~~ri~~~~gd~~~~~--p-~~D~~~l~~vL 149 (244)
T d1fp1d2 118 E-------NA--------------------------------------PPLSGIEHVGGDMFASV--P-QGDAMILKAVC 149 (244)
T ss_dssp T-------TC--------------------------------------CCCTTEEEEECCTTTCC--C-CEEEEEEESSG
T ss_pred h-------cc--------------------------------------CCCCCeEEecCCccccc--c-cceEEEEehhh
Confidence 1 10 11247899999997643 2 45999888777
Q ss_pred cCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCC---------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 235 DCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML---------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 235 dta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~---------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.- ++....|+++++.|+|||.++....++-.....+ .....+.|.+|+.++++++||+.++
T Consensus 150 h~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 150 HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 744 4467899999999999999875432211100000 0123456899999999999999765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.92 E-value=1.3e-09 Score=92.60 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=55.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+.+|||+|||+|.++..++.+|.. |+|+|+|+.++..++. |.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~--N~---------------------------------- 91 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKR--NC---------------------------------- 91 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHH--HC----------------------------------
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHH--cc----------------------------------
Confidence 4779999999999999999999974 9999999999998875 10
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
.++.+..+|+.++ +++||+|++.
T Consensus 92 --------~~~~~~~~D~~~l---~~~fD~Vi~N 114 (197)
T d1ne2a_ 92 --------GGVNFMVADVSEI---SGKYDTWIMN 114 (197)
T ss_dssp --------TTSEEEECCGGGC---CCCEEEEEEC
T ss_pred --------ccccEEEEehhhc---CCcceEEEeC
Confidence 2566888898776 4789999886
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=1.6e-08 Score=86.58 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHh--hhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEee
Q psy3185 74 LEKVQTTLKQFVR--DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNE 148 (298)
Q Consensus 74 ~~~v~~~l~~~~R--dWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D 148 (298)
-..|-+++..+++ +|-..-.++-- .++..|.+... +.+||++|||+|.-+..+|+. |..|+++|
T Consensus 20 p~~vl~~~~~~~~~~~~~m~i~~~~G----~lL~~lv~~~k-------pk~ILEiGt~~G~Sti~la~al~~~g~v~sid 88 (214)
T d2cl5a1 20 PQSVLEAIDTYCTQKEWAMNVGDAKG----QIMDAVIREYS-------PSLVLELGAYCGYSAVRMARLLQPGARLLTME 88 (214)
T ss_dssp HHHHHHHHHHHHHHTCCCCSCHHHHH----HHHHHHHHHHC-------CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCccccCHHHH----HHHHHHHHhhC-------CCEEEEEccCchhHHHHHHHhCCCccEEEEEe
Confidence 3578888888875 46654434432 36666666543 469999999999999999974 67899999
Q ss_pred CCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CC
Q psy3185 149 FSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HP 222 (298)
Q Consensus 149 ~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~ 222 (298)
.++.|+..++..+.+.. -..++.+..||..++.+ ..
T Consensus 89 ~~~~~~~~a~~~~~~~g--------------------------------------l~~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 89 MNPDYAAITQQMLNFAG--------------------------------------LQDKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp SCHHHHHHHHHHHHHHT--------------------------------------CGGGEEEEESCHHHHGGGHHHHSCC
T ss_pred ccHHHHHHHHHHHHHcC--------------------------------------CCccceeeeccccccccchhhcccc
Confidence 99999998887544311 01368899999887642 23
Q ss_pred CceeEEEecccccCcch---HHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 223 NKWDCVATCFFIDCANN---IVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n---~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
++||+|+ ||...+ ...++.+..++|||||++| +.-.+|+
T Consensus 131 ~~~D~if----iD~~~~~~~~~~~l~~~~~lLkpGGvIv-~Ddvl~~ 172 (214)
T d2cl5a1 131 DTLDMVF----LDHWKDRYLPDTLLLEKCGLLRKGTVLL-ADNVIVP 172 (214)
T ss_dssp CCEEEEE----ECSCGGGHHHHHHHHHHTTCEEEEEEEE-ESCCCCC
T ss_pred cccceee----ecccccccccHHHHHHHhCccCCCcEEE-EeCcCCC
Confidence 6788775 454433 2345777788999999876 4545554
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.88 E-value=2.9e-09 Score=89.87 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc--------C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccc-ccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--------G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYP-WVQQTDNNILTHH 187 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--------G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p-~~~~~s~~~~~~~ 187 (298)
+..+|+++|||+|.-++.||.. + ++++|.|+|..+|..|+.-.=..... ..+-| +...+-.......
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~--~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSEL--KTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGG--TTSCHHHHHHHEEECCTTS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHH--hhhhHHHHhhceeecCCCc
Confidence 4689999999999988887742 2 46999999999999887511000000 00000 0000000000000
Q ss_pred cccccccCCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 188 QTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 188 ~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.......+.+ ...+.+...+..... ...+.||+|++-+++. +.+.....++.++++|||||+++ +|+
T Consensus 102 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~-lG~ 171 (193)
T d1af7a2 102 EGLVRVRQEL-------ANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF-AGH 171 (193)
T ss_dssp CSEEEECHHH-------HTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEE-ECT
T ss_pred cceeehHHHH-------HHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEE-Eec
Confidence 0000000000 013344444443322 2358999999988776 44455789999999999999887 564
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=5.6e-09 Score=88.23 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=79.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++..|||.+||+|..+..++++ +..|+|+|.++.|+..++..++..
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------------------------------- 70 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------------------------------- 70 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG--------------------------------
T ss_pred CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc--------------------------------
Confidence 5789999999999999999886 568999999999999998754320
Q ss_pred CCCCCCCCCCCeeEEecccccccc-----CCCceeEEE-----ecccccCc----chHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-----HPNKWDCVA-----TCFFIDCA----NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-----~~~~fD~V~-----t~ffidta----~n~~~yl~~I~~~LkpGG~~In 259 (298)
..++.++.++|.++.. ..+++|+|+ |.+-||.. .++.+.+...+++|||||.++.
T Consensus 71 --------~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 71 --------SDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp --------TTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred --------cccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 1368889999877532 347899884 55656644 3456789999999999999975
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=6e-09 Score=88.47 Aligned_cols=70 Identities=19% Similarity=0.080 Sum_probs=55.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++.+++.+|. .|+|+|+|+.++..++.-+..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~---------------------------------- 91 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE---------------------------------- 91 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG----------------------------------
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHH----------------------------------
Confidence 467999999999999999999986 799999999999988762111
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
...+..+..+|..++ +++||+|++.
T Consensus 92 ------~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 92 ------FKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp ------GTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred ------cCCCceEEECchhhh---CCcCcEEEEc
Confidence 012556788887665 5689999875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=1.3e-08 Score=89.01 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=89.8
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..++++ +-+++..|+... + ...
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~--------------------------------- 119 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV-V-------ENL--------------------------------- 119 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH-H-------TTC---------------------------------
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH-H-------HhC---------------------------------
Confidence 458999999999999999998 568999998531 1 110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCC---eEEEEeccccccccC---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPG---GIWINLGPLLYHYSN--- 269 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpG---G~~In~gPl~y~~~~--- 269 (298)
+...+++++.|||.+-. ..+|+++...+||.- ++....|+++++.|+|| |.++.+..++-....
T Consensus 120 -----~~~~rv~~~~gD~f~~~---p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~ 191 (244)
T d1fp2a2 120 -----SGSNNLTYVGGDMFTSI---PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 191 (244)
T ss_dssp -----CCBTTEEEEECCTTTCC---CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH
T ss_pred -----cccCceEEEecCcccCC---CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCch
Confidence 11258999999997632 357999888888744 34568999999999998 555544322110000
Q ss_pred -----------CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 270 -----------MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 -----------~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.......+.|.+|++++++++||+.++
T Consensus 192 ~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 192 VTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp HHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 000123457899999999999999875
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.80 E-value=3e-08 Score=86.37 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=87.3
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++.+|+++ +-++++.|+... +. .
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~---------------------------------- 119 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------D---------------------------------- 119 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------T----------------------------------
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------h----------------------------------
Confidence 468999999999999999998 467888888542 10 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEeccccccccCCC----
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML---- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~---- 271 (298)
.....++.+..+||.+-.+ . -|+++...+++ ..++....|+++++.|+|||.++...+++-...+.+
T Consensus 120 ----~~~~~r~~~~~~d~~~~~P-~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~ 192 (243)
T d1kyza2 120 ----APSYPGVEHVGGDMFVSIP-K--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATK 192 (243)
T ss_dssp ----CCCCTTEEEEECCTTTCCC-C--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHH
T ss_pred ----cccCCceEEecccccccCC-C--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhH
Confidence 0112478899999976432 2 34444444443 335677899999999999998875544321111100
Q ss_pred ------------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ------------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ------------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+.|.+|++++++++||+.++
T Consensus 193 ~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vk 229 (243)
T d1kyza2 193 GVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFK 229 (243)
T ss_dssp HHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEE
Confidence 0134567899999999999998765
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.78 E-value=3.1e-08 Score=89.36 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||++||+|.++..+|..|.+|+++|.|..++..|+.-+.. | .+
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l----n---------------------------~~- 179 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL----A---------------------------GL- 179 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH----H---------------------------TC-
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh----h---------------------------cc-
Confidence 367999999999999999999999999999999999988762211 0 00
Q ss_pred CCCCCCCCCeeEEecccccccc----CCCceeEEEe---cccccC---c----chHHHHHHHHHHhccCCeEEEEecccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVAT---CFFIDC---A----NNIVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t---~ffidt---a----~n~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
...++.++.+|...+.. ..++||+|+. .|.... . ..+...++.+..+|+|||.++-+.
T Consensus 180 -----~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t--- 251 (309)
T d2igta1 180 -----EQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT--- 251 (309)
T ss_dssp -----TTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE---
T ss_pred -----cCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe---
Confidence 01368899999876542 3478999986 243321 1 223345556778999998654221
Q ss_pred ccccCCCCCCccCCCHHHHHHHHH
Q psy3185 265 YHYSNMLNEDSIEPSYEVVKQVIQ 288 (298)
Q Consensus 265 y~~~~~~~~~~~~ls~eEl~~~~~ 288 (298)
. .+..++.+++..++.
T Consensus 252 ---~-----~s~~~s~~~~~~~~~ 267 (309)
T d2igta1 252 ---A-----YSIRASFYSMHELMR 267 (309)
T ss_dssp ---E-----CCTTSCHHHHHHHHH
T ss_pred ---c-----CCCCCCHHHHHHHHH
Confidence 0 234456666666554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=2.2e-08 Score=83.61 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=70.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||++||+|.++.|.+.+|.. |+++|.+..++..++.-+...
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~---------------------------------- 89 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL---------------------------------- 89 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc----------------------------------
Confidence 569999999999999999999985 999999999998887632210
Q ss_pred CCCCCCCCCeeEEecccccccc-CCCceeEEEec--ccccCcchHHHHHHHHHH--hccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC--FFIDCANNIVSFIETIFN--ILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~--ffidta~n~~~yl~~I~~--~LkpGG~~In 259 (298)
. ..+..+..+|...+.. ...+||+|+.- |-- ......++.+.+ +|+|+|++|.
T Consensus 90 ----~-~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 90 ----K-AGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR---GLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp ----T-CCSEEEECSCHHHHHSSCCCCEEEEEECCSSST---TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ----c-ccceeeeeecccccccccccccCEEEEcCcccc---chHHHHHHHHHHCCCCCCCeEEEE
Confidence 0 1356778888766543 35789998763 322 223455666654 6999998873
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.74 E-value=2.1e-08 Score=83.79 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||++||+|.++.|.+.+|.. |+++|.|..++..++.-+....
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~--------------------------------- 88 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK--------------------------------- 88 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh---------------------------------
Confidence 679999999999999999999985 9999999999988876332211
Q ss_pred CCCCCCCCCeeEEeccccccc----cCCCceeEEEecccccC---cchHHHHHHHHHH--hccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATCFFIDC---ANNIVSFIETIFN--ILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~ffidt---a~n~~~yl~~I~~--~LkpGG~~I 258 (298)
...++.+..+|...+. ....+||+|+ +|. ..+....++.|.. +|+|||++|
T Consensus 89 -----~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf----lDPPY~~~~~~~~l~~i~~~~~L~~~giIi 148 (182)
T d2fhpa1 89 -----EPEKFEVRKMDANRALEQFYEEKLQFDLVL----LDPPYAKQEIVSQLEKMLERQLLTNEAVIV 148 (182)
T ss_dssp -----CGGGEEEEESCHHHHHHHHHHTTCCEEEEE----ECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----cccccccccccchhhhhhhcccCCCcceEE----echhhhhhHHHHHHHHHHHCCCCCCCEEEE
Confidence 0136778888876643 2356899885 453 2345677888754 799999877
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.74 E-value=6.6e-08 Score=87.52 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+.||+|.++...|..|. .|+++|.|..++..++.-+.. |
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~----n----------------------------- 190 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA----N----------------------------- 190 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH----T-----------------------------
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHH----h-----------------------------
Confidence 367999999999999999988887 599999999999988762211 0
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEec---cc-----ccCc-chHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC---FF-----IDCA-NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~---ff-----idta-~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+. ..++.++.+|..++.. ..++||+|+.- |- +..+ .+..+.++...++|+|||+++-
T Consensus 191 ---~l~-~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~ 261 (317)
T d2b78a2 191 ---HLD-MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA 261 (317)
T ss_dssp ---TCC-CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---ccc-CcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 011 1468899999866532 34689998852 21 1122 2355688888999999999873
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=5.4e-08 Score=83.65 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=88.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.++..|.+... ..+||++|||+|.-+..+|.. +-.++.+|.++.+...|+..+.++.
T Consensus 49 ~lL~~L~~~~~-------~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag------------- 108 (219)
T d2avda1 49 QLLANLARLIQ-------AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE------------- 108 (219)
T ss_dssp HHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHccC-------CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-------------
Confidence 46777776653 569999999999999999975 5689999999999999987654321
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEeccccc-CcchHHHHHHHHHHhc
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFID-CANNIVSFIETIFNIL 251 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffid-ta~n~~~yl~~I~~~L 251 (298)
....+.+..||+.+... ..++||.|+. | ...+...|++.+.++|
T Consensus 109 -------------------------~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifi----D~dk~~y~~~~~~~~~lL 159 (219)
T d2avda1 109 -------------------------AEHKIDLRLKPALETLDELLAAGEAGTFDVAVV----DADKENCSAYYERCLQLL 159 (219)
T ss_dssp -------------------------CTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEE----CSCSTTHHHHHHHHHHHE
T ss_pred -------------------------ccceEEEEEeehhhcchhhhhhcccCCccEEEE----eCCHHHHHHHHHHHHHHh
Confidence 11468899999876532 3578998864 4 4456789999999999
Q ss_pred cCCeEEEEecccccc
Q psy3185 252 KPGGIWINLGPLLYH 266 (298)
Q Consensus 252 kpGG~~In~gPl~y~ 266 (298)
+|||++|. ...+|+
T Consensus 160 ~~GGvii~-Dn~l~~ 173 (219)
T d2avda1 160 RPGGILAV-LRVLWR 173 (219)
T ss_dssp EEEEEEEE-ECCSGG
T ss_pred cCCcEEEE-eCCccc
Confidence 99999983 334454
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.64 E-value=3.3e-08 Score=87.87 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=78.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+||++|+|.|..+.++.+.+. +|+++|+++.++..|+..+...... +....
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~---------------------~~~~~---- 126 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGL---------------------LEAML---- 126 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTH---------------------HHHHH----
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccch---------------------hhhhh----
Confidence 367999999999999999988765 5999999999999988633110000 00000
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.....++.++.+|...+....++||+|+.-.+-.. +..+ .++++.+.+.|+|||+++.
T Consensus 127 ----~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 127 ----NGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp ----TTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence 01125899999998877666789999875332211 1111 4799999999999999973
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=7.2e-07 Score=77.82 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=38.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~ 160 (298)
+..+|||+|||+|-++.-||++ +++|+|+|+|+.++..|+.-
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N 104 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN 104 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH
Confidence 4579999999999999999987 78999999999999999874
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.57 E-value=1.4e-07 Score=85.00 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc----C---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----G---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMA 191 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~ 191 (298)
++.+|||||||+|.+...++.+ + ..++|+|+++.|+..|+..+...
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~--------------------------- 169 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------- 169 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---------------------------
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh---------------------------
Confidence 4678999999999999888642 2 25999999999998876532210
Q ss_pred cccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCc---------------ch-HHHHHHHHHHhccC
Q psy3185 192 VTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCA---------------NN-IVSFIETIFNILKP 253 (298)
Q Consensus 192 ~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta---------------~n-~~~yl~~I~~~Lkp 253 (298)
..+.....+|+.... ..++||+|++. |..... .+ -..+++.+.+.|||
T Consensus 170 -------------~~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~ 235 (328)
T d2f8la1 170 -------------RQKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP 235 (328)
T ss_dssp -------------TCCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE
T ss_pred -------------hhhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC
Confidence 013345555654432 35789999886 321111 11 12379999999999
Q ss_pred CeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCC
Q psy3185 254 GGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLG 291 (298)
Q Consensus 254 GG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~G 291 (298)
||..+.+-|--+-.. -+.+.+++.+.+.+
T Consensus 236 ~G~~~~I~p~~~l~~---------~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 236 GGYLFFLVPDAMFGT---------SDFAKVDKFIKKNG 264 (328)
T ss_dssp EEEEEEEEEGGGGGS---------TTHHHHHHHHHHHE
T ss_pred CCceEEEecCccccC---------chhHHHHHHHHhCC
Confidence 999877767433222 12566777666543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=1.5e-07 Score=81.19 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=86.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+... ..+||++|+|+|.-+..+|+. +..|+.+|.++.+...|+...+++.
T Consensus 50 ~L~~L~~~~~-------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-------------- 108 (227)
T d1susa1 50 FLSMLLKLIN-------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-------------- 108 (227)
T ss_dssp HHHHHHHHHT-------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHhcC-------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--------------
Confidence 6666665543 569999999999999999964 5689999999999999887655421
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-------CCCceeEEEeccccc-CcchHHHHHHHHHHhc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-------HPNKWDCVATCFFID-CANNIVSFIETIFNIL 251 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-------~~~~fD~V~t~ffid-ta~n~~~yl~~I~~~L 251 (298)
....+.++.||+.+... ..++||.|+ || .-.+...|++.+.++|
T Consensus 109 ------------------------~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iF----iDa~k~~y~~~~e~~~~ll 160 (227)
T d1susa1 109 ------------------------VDHKIDFREGPALPVLDEMIKDEKNHGSYDFIF----VDADKDNYLNYHKRLIDLV 160 (227)
T ss_dssp ------------------------CGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEE----ECSCSTTHHHHHHHHHHHB
T ss_pred ------------------------cccceeeeehHHHHHHHHHHhccccCCceeEEE----eccchhhhHHHHHHHHhhc
Confidence 11468899999877643 246899875 56 3456789999999999
Q ss_pred cCCeEEEEecccccc
Q psy3185 252 KPGGIWINLGPLLYH 266 (298)
Q Consensus 252 kpGG~~In~gPl~y~ 266 (298)
+|||++|. .-.+|+
T Consensus 161 ~~gGiii~-DNvl~~ 174 (227)
T d1susa1 161 KVGGVIGY-DNTLWN 174 (227)
T ss_dssp CTTCCEEE-ETTTGG
T ss_pred CCCcEEEE-ccCCCC
Confidence 99999883 344554
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=1.1e-07 Score=85.99 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=77.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+||++|.|.|.++.++.+.. .+|+++|+++.++..|+.-+..... .
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-----------------------------~ 127 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-----------------------------G 127 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-----------------------------T
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-----------------------------C
Confidence 35799999999999999998873 4799999999999988763221000 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecc---cc-cC-cchH--HHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCF---FI-DC-ANNI--VSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~f---fi-dt-a~n~--~~yl~~I~~~LkpGG~~I 258 (298)
.....++.++.+|..++.. .+++||+|+.-. +. +. +..+ .++++.+.++|||||+++
T Consensus 128 -----~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv 192 (312)
T d1uira_ 128 -----AFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMG 192 (312)
T ss_dssp -----GGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEE
T ss_pred -----ccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEE
Confidence 0012478999999988753 457899987432 21 11 1223 479999999999999987
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.56 E-value=1.7e-07 Score=81.33 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+++.+.+.... .++.+||++|||+|.|+..|++.|..|+|+|.+..|+...+.
T Consensus 8 ~i~~~iv~~~~~----~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~ 61 (235)
T d1qama_ 8 HNIDKIMTNIRL----NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTEN 61 (235)
T ss_dssp HHHHHHHTTCCC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHH
Confidence 366777766543 357899999999999999999999999999999999887665
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.55 E-value=1.7e-07 Score=78.90 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHH
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFM 153 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~M 153 (298)
+|.+.+.+.+.. .++.+|||||||+|.+...+.++ ...+.|+|+++.+
T Consensus 6 ~i~~~m~~l~~~----~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~ 56 (223)
T d2ih2a1 6 EVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA 56 (223)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT
T ss_pred HHHHHHHHhcCC----CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH
Confidence 467777777653 35679999999999999888754 3569999998754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=3.3e-07 Score=82.06 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=76.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|.|.|.++.++.+.. -.|+++|+++.|+..|+.-+......
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~----------------------------- 139 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG----------------------------- 139 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG-----------------------------
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhccc-----------------------------
Confidence 35799999999999999999873 46999999999999987632211000
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEeccccc---CcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFID---CANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffid---ta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
-...++.++.+|..++.. .+++||+|+.-.+-. .+..+ .++++.+++.|+|||+++.
T Consensus 140 ------~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~ 202 (295)
T d1inla_ 140 ------FDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 202 (295)
T ss_dssp ------GGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence 012478899999887754 357899887543211 11122 4799999999999999984
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.44 E-value=1.1e-06 Score=78.36 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+||.+|-|.|..+.++.+. + -.|+++|+++.++..++.-+......
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~----------------------------- 130 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG----------------------------- 130 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-----------------------------
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc-----------------------------
Confidence 3579999999999999999987 4 36999999999999987633211000
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccc--cCcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFI--DCANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffi--dta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
....++.++.+|..++.. .+++||+|+.-.+= ..+..+ .++++.++++|+|||+++.
T Consensus 131 ------~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 193 (290)
T d1xj5a_ 131 ------YEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 193 (290)
T ss_dssp ------GGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence 012478999999877653 34689988754331 112222 4799999999999999984
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.38 E-value=4e-07 Score=82.02 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|-|.|.++.++.+.. -.|+.+|+.+.++..|+.-+.. .+.
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~------------~~~------------------ 155 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG------------MSC------------------ 155 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT------------TSG------------------
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchh------------hcc------------------
Confidence 35699999999999999999874 4799999999999998763211 000
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEeccccc--CcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFID--CANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffid--ta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
. ....++.++.+|..++.. .+++||+|+.-.+-. .+..+ .++++.++++|+|||+++.
T Consensus 156 ----~-~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~ 218 (312)
T d2b2ca1 156 ----G-FSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 218 (312)
T ss_dssp ----G-GGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred ----c-cCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence 0 012488999999887754 457899988643321 12222 3689999999999999984
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.37 E-value=4.2e-08 Score=85.75 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++.+||++|||+|.|+..|++.|..|+|+|.+..|+..++. +
T Consensus 17 ii~kIv~~~~~----~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~---~------------------- 70 (245)
T d1yuba_ 17 VLNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSE---K------------------- 70 (245)
T ss_dssp THHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSC---T-------------------
T ss_pred HHHHHHHhcCC----CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhh---h-------------------
Confidence 45556665542 246799999999999999999999999999999988654321 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
.+...++.+..||+.++..+...++.|++.
T Consensus 71 -------------------~~~~~n~~ii~~D~l~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 71 -------------------LKLNTRVTLIHQDILQFQFPNKQRYKIVGN 100 (245)
T ss_dssp -------------------TTTCSEEEECCSCCTTTTCCCSSEEEEEEE
T ss_pred -------------------hhhccchhhhhhhhhccccccceeeeEeee
Confidence 112258999999999887666677777765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=6.5e-07 Score=79.70 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=76.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.+.+||++|-|.|..+.++.+. + -+|+.+|+.+.++..|+.-+......
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~----------------------------- 128 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG----------------------------- 128 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-----------------------------
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccc-----------------------------
Confidence 4579999999999999999987 3 47999999999999997643211000
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEeccccc--CcchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFID--CANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffid--ta~n~--~~yl~~I~~~LkpGG~~In 259 (298)
....+++++.+|..++.. ..++||+|+.-.+=. .+..+ .++++.+.+.|+|||+++.
T Consensus 129 ------~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 129 ------YSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp ------GGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 012488999999877653 457999987643211 12222 2689999999999999974
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=3.1e-06 Score=74.63 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=80.5
Q ss_pred CCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
..+|||.|||+|-++..+|+.. ..|+|+|+|+..+..|+. | +.. +
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~--N-a~~-~------------------------------ 156 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK--N-AER-H------------------------------ 156 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH--H-HHH-T------------------------------
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHH--H-HHH-c------------------------------
Confidence 4689999999999999998764 679999999999999886 2 111 0
Q ss_pred CCCCCCCCCeeEEeccccccccC-CCceeEEEecc-cccCc------------------ch-HHHHHHHHHHhccCCeEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCF-FIDCA------------------NN-IVSFIETIFNILKPGGIW 257 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~f-fidta------------------~n-~~~yl~~I~~~LkpGG~~ 257 (298)
.-...+.+..+|+.+.... .++||+|+|+= .|.+. .| +.-|-+-+.++|+|||.+
T Consensus 157 ----~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l 232 (271)
T d1nv8a_ 157 ----GVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIV 232 (271)
T ss_dssp ----TCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ----CCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEE
Confidence 0013566788888776432 37899998861 11111 11 223444467899999987
Q ss_pred EE-eccccccccCCCCCCccCCCHHHHHHHHHhCCC
Q psy3185 258 IN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 258 In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF 292 (298)
+. +|+- . .+++.+++++.||
T Consensus 233 ~~Eig~~---Q------------~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 233 LMEIGED---Q------------VEELKKIVSDTVF 253 (271)
T ss_dssp EEECCTT---C------------HHHHTTTSTTCEE
T ss_pred EEEECHH---H------------HHHHHHHHHhCCE
Confidence 63 3431 1 5667777777777
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=1.2e-06 Score=77.45 Aligned_cols=106 Identities=21% Similarity=0.175 Sum_probs=77.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||.+|-|.|..+.++.+. + -.|+.+|+.+.++.+|+.-+.....
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~------------------------------ 124 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG------------------------------ 124 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT------------------------------
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc------------------------------
Confidence 3579999999999999999986 4 4799999999999998873321000
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEeccccc--Ccch--HHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFID--CANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffid--ta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
. ....++.++.+|..++.. .+++||+|+.-.+=. .+.+ -.++++.+.++|+|||+++.
T Consensus 125 ----~-~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~ 187 (274)
T d1iy9a_ 125 ----K-LDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (274)
T ss_dssp ----T-TTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred ----c-ccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence 0 112588999999877654 357899987543211 1122 24799999999999999984
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.25 E-value=4.6e-06 Score=68.98 Aligned_cols=99 Identities=19% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+-||||.++.|.+.+|. .|+.||.+...+...+.-+.+...
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~-------------------------------- 91 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC-------------------------------- 91 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--------------------------------
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcc--------------------------------
Confidence 56999999999999999999998 599999999988777653222100
Q ss_pred CCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCc---chHHHHHHHHHH--hccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCA---NNIVSFIETIFN--ILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta---~n~~~yl~~I~~--~LkpGG~~In 259 (298)
......+...|..... ....+||+|+ +|.. ......++.|.. +|+|+|++|.
T Consensus 92 -----~~~~~~~~~~d~~~~l~~~~~~~~fDlIF----lDPPY~~~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 92 -----SSEQAEVINQSSLDFLKQPQNQPHFDVVF----LDPPFHFNLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp -----CTTTEEEECSCHHHHTTSCCSSCCEEEEE----ECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----cccccccccccccccccccccCCcccEEE----echhHhhhhHHHHHHHHHHhCCcCCCcEEEE
Confidence 0013444555543322 2345799885 4422 234556776654 7999998873
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=4.6e-06 Score=69.25 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++..++|..||.|..+.+|.+.+..|.|+|..+.|+..++.+.
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~------------------------------------- 60 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH------------------------------------- 60 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-------------------------------------
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-------------------------------------
Confidence 5789999999999999999999889999999999998776420
Q ss_pred CCCCCCCCCeeEEecccccccc-----CCCceeEEE-----ecccccCcch----HHHHHHHHHHhccCCeEEEEecccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-----HPNKWDCVA-----TCFFIDCANN----IVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-----~~~~fD~V~-----t~ffidta~n----~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
..++.+..++|.++.. ..+.+|.|+ |.+-||...+ +...|+...++|+|||..+.+ .
T Consensus 61 ------~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii---~ 131 (182)
T d1wg8a2 61 ------LPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI---A 131 (182)
T ss_dssp ------CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE---E
T ss_pred ------ccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE---e
Confidence 1267777787776532 236788774 5666776654 334678888999999998743 3
Q ss_pred ccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 265 YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 265 y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
||... ...++..+++.+|+++
T Consensus 132 fhs~E----------d~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 132 FHSLE----------DRVVKRFLRESGLKVL 152 (182)
T ss_dssp CSHHH----------HHHHHHHHHHHCSEES
T ss_pred cccch----------hHHHHHHHhhccceec
Confidence 44321 2346666666666543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.13 E-value=6.1e-06 Score=76.85 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=78.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---------------CCeEEEeeCCHHHHHHHHHHHhhhhh
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---------------GYVCQGNEFSLFMLFASNFILNKCRE 166 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---------------G~~v~g~D~S~~Ml~~a~~~l~~~~~ 166 (298)
+|++.+.+.+.+ ..+.+||||.||+|.+..++.++ ...+.|+|.++.+...|+.-+-
T Consensus 149 ~Iv~~mv~ll~~----~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~---- 220 (425)
T d2okca1 149 PLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY---- 220 (425)
T ss_dssp HHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH----
T ss_pred hhhHhhheeccC----cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh----
Confidence 355666555543 24679999999999999887764 1348999999999887764211
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--cccc---------
Q psy3185 167 KNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFID--------- 235 (298)
Q Consensus 167 ~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffid--------- 235 (298)
+| ++. .....+..+|+..-. ...+||+|++. |-..
T Consensus 221 ---------l~------------------g~~------~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~ 266 (425)
T d2okca1 221 ---------LH------------------GIG------TDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINR 266 (425)
T ss_dssp ---------HT------------------TCC------SSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCC
T ss_pred ---------hc------------------CCc------cccceeecCchhhhh-cccccceEEecCCCCCCccccchhhh
Confidence 00 000 013345667776543 35789998885 3221
Q ss_pred ------CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 236 ------CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 236 ------ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
+...-..++..+.++|||||....+-|
T Consensus 267 ~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 267 PDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp TTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 111234699999999999998876655
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=7.7e-05 Score=67.18 Aligned_cols=132 Identities=13% Similarity=0.169 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.+++.+.+.... .++.+|||+-||+|.++..||+++..|+|+|.|..++..|+.-.. .+.
T Consensus 199 ~l~~~v~~~~~~----~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~----~n~------------ 258 (358)
T d1uwva2 199 KMVARALEWLDV----QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR----LNG------------ 258 (358)
T ss_dssp HHHHHHHHHHTC----CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHH----HTT------------
T ss_pred HHHHHHHHhhcc----CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHH----hcc------------
Confidence 344444444432 246799999999999999999999999999999999998876211 110
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEecccccccc----CCCceeEEEecccccCcc-hHHHHHHHHHHhccCCe-
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATCFFIDCAN-NIVSFIETIFNILKPGG- 255 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~ffidta~-n~~~yl~~I~~~LkpGG- 255 (298)
-.|+.+..+|..+... ...+||+|+ +|... -..+.++.|.+. +|.=
T Consensus 259 -----------------------i~n~~~~~~~~~~~~~~~~~~~~~~d~vi----lDPPR~G~~~~~~~l~~~-~~~~i 310 (358)
T d1uwva2 259 -----------------------LQNVTFYHENLEEDVTKQPWAKNGFDKVL----LDPARAGAAGVMQQIIKL-EPIRI 310 (358)
T ss_dssp -----------------------CCSEEEEECCTTSCCSSSGGGTTCCSEEE----ECCCTTCCHHHHHHHHHH-CCSEE
T ss_pred -----------------------cccceeeecchhhhhhhhhhhhccCceEE----eCCCCccHHHHHHHHHHc-CCCEE
Confidence 1367777777655432 246789875 45321 133456666663 4543
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.|...|-.. ..++..++ +.||++.+
T Consensus 311 vYVSCnp~Tl--------------aRDl~~l~-~~gy~l~~ 336 (358)
T d1uwva2 311 VYVSCNPATL--------------ARDSEALL-KAGYTIAR 336 (358)
T ss_dssp EEEESCHHHH--------------HHHHHHHH-HTTCEEEE
T ss_pred EEEeCCHHHH--------------HHHHHHHH-HCCCeEeE
Confidence 3344555211 23444443 56888765
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=8.2e-05 Score=62.70 Aligned_cols=133 Identities=8% Similarity=0.066 Sum_probs=87.6
Q ss_pred HHHHHHHHhhhccCCh-----HHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCC
Q psy3185 78 QTTLKQFVRDWSEEGS-----EERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFS 150 (298)
Q Consensus 78 ~~~l~~~~RdWs~~g~-----~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S 150 (298)
-..+.++..+|...-. ...+..-.-|++.+.-. +. -++.+|||+|+|.|--+.-||-. ..+|+.+|-+
T Consensus 24 L~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~-~~----~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~ 98 (207)
T d1jsxa_ 24 LIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVA-PY----LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSL 98 (207)
T ss_dssp HHHHHHHHHHHC------------CHHHHHHHHHHHHG-GG----CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhhh-hh----hcCCceeeeeccCCceeeehhhhcccceEEEEecc
Confidence 3466667778875221 12222334566665522 21 12469999999999999998865 4679999999
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
..=....+.+.... .+ .|+....+...++. ...+||+|++
T Consensus 99 ~KK~~FL~~~~~~L------------------------------------~L---~nv~v~~~R~E~~~-~~~~fD~V~s 138 (207)
T d1jsxa_ 99 GKRVRFLRQVQHEL------------------------------------KL---ENIEPVQSRVEEFP-SEPPFDGVIS 138 (207)
T ss_dssp HHHHHHHHHHHHHT------------------------------------TC---SSEEEEECCTTTSC-CCSCEEEEEC
T ss_pred hHHHHHHHHHHHHc------------------------------------CC---cceeeeccchhhhc-cccccceehh
Confidence 98666555433221 11 37788888877764 3568999887
Q ss_pred cccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 231 CFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 231 ~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
--| .++...++-..++++|||.++-
T Consensus 139 RA~----~~~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 139 RAF----ASLNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp SCS----SSHHHHHHHHTTSEEEEEEEEE
T ss_pred hhh----cCHHHHHHHHHHhcCCCcEEEE
Confidence 544 3466788888999999999984
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=4.9e-05 Score=66.94 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~ 160 (298)
|++.+.+.... .++..||++|+|+|.|+..|+++|..|+++|....|+...+..
T Consensus 9 i~~kIv~~~~~----~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~ 62 (278)
T d1zq9a1 9 IINSIIDKAAL----RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKR 62 (278)
T ss_dssp HHHHHHHHTCC----CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHH
Confidence 66666666542 2467999999999999999999999999999999999876653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=2e-05 Score=68.54 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+++.+.+.... .++..||++|||+|.|+..|++++..|+++|++..|+...+
T Consensus 9 ~~~~Iv~~~~~----~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~ 60 (252)
T d1qyra_ 9 VIDSIVSAINP----QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60 (252)
T ss_dssp HHHHHHHHHCC----CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHH
Confidence 44555544432 24679999999999999999999999999999999987654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.68 E-value=0.00024 Score=61.01 Aligned_cols=122 Identities=14% Similarity=0.043 Sum_probs=83.8
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|+|+|+|.|--+.-||-. ..+++.+|-+..-...-+.+....
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L--------------------------------- 117 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--------------------------------- 117 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh---------------------------------
Confidence 568999999999988888853 578999999998665555443221
Q ss_pred CCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-ccccccccCCCCC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-GPLLYHYSNMLNE 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-gPl~y~~~~~~~~ 273 (298)
.+ .++.++.+...++.. ..++||+|++-.| ..+...++-..+++||||.+|-. |+ .|..+
T Consensus 118 ---~L---~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~-~~~~E----- 181 (239)
T d1xdza_ 118 ---QL---ENTTFCHDRAETFGQRKDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAA-SAEEE----- 181 (239)
T ss_dssp ---TC---SSEEEEESCHHHHTTCTTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC--CHHH-----
T ss_pred ---CC---CCcEEEeehhhhccccccccccceEEEEhhh----hCHHHHHHHHhhhcccCCEEEEECCC-ChHHH-----
Confidence 11 366777777665532 2368999988643 35667888899999999999853 33 12111
Q ss_pred CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++....+...|+++..
T Consensus 182 ------l~~a~~~~~~~~~~~~~ 198 (239)
T d1xdza_ 182 ------LNAGKKAITTLGGELEN 198 (239)
T ss_dssp ------HHHHHHHHHHTTEEEEE
T ss_pred ------HHHHHHHHHHcCCEEEE
Confidence 34445667788888753
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00014 Score=69.22 Aligned_cols=123 Identities=21% Similarity=0.175 Sum_probs=73.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----C----------------CeEEEeeCCHHHHHHHHHHH
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR----G----------------YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G----------------~~v~g~D~S~~Ml~~a~~~l 161 (298)
+|++.+.+.+.+ ..+.+|+||.||+|.+.....+. + ..+.|.|+++.+...|+.-+
T Consensus 151 ~Iv~~mv~ll~~----~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 151 PLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred chhHhhhhcccC----ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 466666666543 34679999999999998876552 1 24899999999987775421
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEec--cccc---
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATC--FFID--- 235 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~--ffid--- 235 (298)
-- ... ...+ . ..-.+..+++..-. ....+||+|++. |-..
T Consensus 227 ~l-~~~-~~~i---~-----------------------------~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~ 272 (524)
T d2ar0a1 227 LL-HDI-EGNL---D-----------------------------HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT 272 (524)
T ss_dssp HT-TTC-CCBG---G-----------------------------GTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSC
T ss_pred Hh-hcc-cccc---c-----------------------------ccchhhhhhhhhhcccccccceeEEecCCccccccc
Confidence 10 000 0000 0 01123344433221 134679988875 3211
Q ss_pred ---------CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 236 ---------CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 236 ---------ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
+...-..++..+.+.|||||....+-|
T Consensus 273 ~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 273 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 111123589999999999999876666
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.42 E-value=0.00011 Score=63.72 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=58.3
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
..+|||.=||+|+.++.+|..|++|+++|-|+.+....+.-+.+.....+ ...++
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~--~~~~~----------------------- 143 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAE--IGGWL----------------------- 143 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTT--THHHH-----------------------
T ss_pred CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCch--hHHHH-----------------------
Confidence 45899999999999999999999999999999987665554443221100 00000
Q ss_pred CCCCCCCCeeEEeccccccccC-CCceeEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVH-PNKWDCVAT 230 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t 230 (298)
..+++++.||..++... .+.||+|.-
T Consensus 144 -----~~ri~li~~Ds~~~L~~~~~~~DvIYl 170 (250)
T d2oyra1 144 -----QERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_dssp -----HHHEEEEESCHHHHSTTCSSCCSEEEE
T ss_pred -----hhhheeecCcHHHHHhccCCCCCEEEE
Confidence 13788999998887643 467998864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=0.00017 Score=58.05 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=36.4
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.||| +|.++..+|+. |.+|.++|.|+..+..++.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 69 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence 357899999999 88888888865 9999999999998887765
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00031 Score=56.56 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+++.+||+.|| |.|.++..+|+. |++|.+++-|+.-+..++.. .+ ..++
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~--Ga-----~~vi--------------------- 78 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--GA-----HEVF--------------------- 78 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--TC-----SEEE---------------------
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccccccccccc--Cc-----cccc---------------------
Confidence 35779999997 789999999976 99999999898766655431 00 0000
Q ss_pred CCCCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
+....||.+-. ...+.+|+|+.+- - ..+++...++|+|||.++.+|.
T Consensus 79 --------------~~~~~~~~~~i~~~t~~~g~d~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 79 --------------NHREVNYIDKIKKYVGEKGIDIIIEML-----A--NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp --------------ETTSTTHHHHHHHHHCTTCEEEEEESC-----H--HHHHHHHHHHEEEEEEEEECCC
T ss_pred --------------ccccccHHHHhhhhhccCCceEEeecc-----c--HHHHHHHHhccCCCCEEEEEec
Confidence 00111232211 1346799988653 2 2568888899999999998763
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00095 Score=54.60 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+||+-|..+..++++ + ..|.|+|..+.
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------------------------------------------- 58 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------------------------------------------- 58 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-------------------------------------------
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-------------------------------------------
Confidence 5779999999999999888764 2 45778875431
Q ss_pred CCCCCCCCCCCCeeEEecccccccc--------CCCceeEEEecccccCc--------ch---HHHHHHHHHHhccCCeE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV--------HPNKWDCVATCFFIDCA--------NN---IVSFIETIFNILKPGGI 256 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~--------~~~~fD~V~t~ffidta--------~n---~~~yl~~I~~~LkpGG~ 256 (298)
.| -.+..+..||+..... ..+++|+|++=...++. .. ....+....++|||||.
T Consensus 59 --~~-----i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~ 131 (180)
T d1ej0a_ 59 --DP-----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp --CC-----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred --cc-----cCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCc
Confidence 11 1366778888765431 34789999875443332 11 22466777889999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
+|.
T Consensus 132 fV~ 134 (180)
T d1ej0a_ 132 FVV 134 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.21 E-value=0.0035 Score=55.42 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=82.4
Q ss_pred CCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
.++.+|||..||-|.=+..+|.. ...++++|.|..-+...+..+++..-
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---------------------------- 166 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---------------------------- 166 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC----------------------------
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh----------------------------
Confidence 35789999999999988888765 34699999999988766654443210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe---cc---cc---------cCcchH-------HHHHHHHHHhcc
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---CF---FI---------DCANNI-------VSFIETIFNILK 252 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~f---fi---------dta~n~-------~~yl~~I~~~Lk 252 (298)
.++.....|+..+....+.||.|+. |- .+ .+..++ .+.+....++||
T Consensus 167 -----------~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk 235 (313)
T d1ixka_ 167 -----------LNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK 235 (313)
T ss_dssp -----------CSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred -----------hccccccccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC
Confidence 2455566666666545677887642 11 01 112222 246777888999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|||++| |-+... .-+=+.+-+..++++.+|+++
T Consensus 236 ~gG~lV------YsTCSl----~~eENE~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 236 PGGILV------YSTCSL----EPEENEFVIQWALDNFDVELL 268 (313)
T ss_dssp EEEEEE------EEESCC----CGGGTHHHHHHHHHHSSEEEE
T ss_pred CCcEEE------EeeccC----ChHhHHHHHHHHHhcCCCEEe
Confidence 999887 443311 111125667777777887775
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.98 E-value=0.00063 Score=55.08 Aligned_cols=42 Identities=26% Similarity=0.159 Sum_probs=35.2
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.||| .|.++..+|+. |+ .|+++|.++.-+..++.
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence 357899999998 48888888876 87 69999999998887765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.93 E-value=0.0023 Score=50.79 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.||| .|.++..+|+. |.+|.++|.+..-+..++.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence 56799999998 77888888865 8999999999998877765
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.50 E-value=0.0039 Score=56.59 Aligned_cols=111 Identities=13% Similarity=0.020 Sum_probs=72.4
Q ss_pred CCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+.||+|-.+...|+. |. .|++||.|+..+..++.-+.. |... .+ .+..... +.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~l----N~~~--~~---------~~~~~~~----~~ 106 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML----NFDG--EL---------RESKGRA----IL 106 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH----HCCS--CC---------EECSSEE----EE
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHh----cCcc--cc---------ccccccc----cc
Confidence 569999999999999987764 54 699999999999877652211 0000 00 0000000 00
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.....+.+...|...+.. ....||+|- ||.--....||+...+.+|.||++.
T Consensus 107 -----~~~~~~~~~~~Da~~~~~~~~~~fDvID----iDPfGs~~pfldsAi~a~~~~Gll~ 159 (375)
T d2dula1 107 -----KGEKTIVINHDDANRLMAERHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILG 159 (375)
T ss_dssp -----ESSSEEEEEESCHHHHHHHSTTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred -----cccceeEeehhhhhhhhHhhcCcCCccc----CCCCCCcHHHHHHHHHHhccCCEEE
Confidence 011356677888766543 346799875 4544555789999999999999986
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.45 E-value=0.0029 Score=53.75 Aligned_cols=33 Identities=18% Similarity=0.012 Sum_probs=25.3
Q ss_pred CCeEEEecccCcHHHHHHHH----cC--CeEEEeeCCHH
Q psy3185 120 DVNILVPGAGLGRLAFEIAR----RG--YVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~----~G--~~v~g~D~S~~ 152 (298)
+.+||++|++.|.-+..+|. .| ..++|+|+...
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~ 119 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS 119 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence 46999999999987766653 23 57999998653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.38 E-value=0.0018 Score=51.99 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
+++.+||+.|+ |.|.++..+|+. |..|.+++-|+.-+..++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~ 69 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL 69 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred CCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc
Confidence 35779999885 568999999976 999999999887555444
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.32 E-value=0.0024 Score=51.46 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |. .|.++|.+..-+..++.
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence 3577999999997 8888888886 76 69999999998887765
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.013 Score=50.80 Aligned_cols=45 Identities=16% Similarity=-0.040 Sum_probs=37.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
++.+|||..||-|.=+..||..+ ..|+++|.|..-+...+..+++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r 148 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 148 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhc
Confidence 57799999999999999998875 4599999999988776665443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.28 E-value=0.0031 Score=49.89 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=33.7
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|||. |.++..+|+. |..|.++|.++.-+..++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence 3577999999974 6677777765 8999999999988877665
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.18 E-value=0.018 Score=45.23 Aligned_cols=39 Identities=28% Similarity=0.182 Sum_probs=30.9
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.||..+|+|. +.+|..|++.|++|++.|.+...+..++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~ 41 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE 41 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH
Confidence 3789998873 44677788889999999999987776543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.011 Score=46.76 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=33.3
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.||| .|.++..+|+. |..+.++|-+..=+..++.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence 357899999997 47788888875 9999999999886665554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.04 E-value=0.025 Score=44.36 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=30.7
Q ss_pred eEEEecccC-c-HHHHHHHHcCC--eEEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGAGL-G-RLAFEIARRGY--VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGcG~-G-rla~ela~~G~--~v~g~D~S~~Ml~~a~~ 159 (298)
+|+.+|||+ | -+|..|.+.|+ +|+|.|.+...+..++.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~ 44 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD 44 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence 699999987 3 36777888886 69999999998887664
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.02 E-value=0.018 Score=51.71 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=58.2
Q ss_pred eeEEeccccccccCCCceeEEEecccccCcc---------------------------------hHHHHHHHHHHhccCC
Q psy3185 208 FSMAAGDFLQVYVHPNKWDCVATCFFIDCAN---------------------------------NIVSFIETIFNILKPG 254 (298)
Q Consensus 208 ~~~~~gDf~~~~~~~~~fD~V~t~ffidta~---------------------------------n~~~yl~~I~~~LkpG 254 (298)
+..+-|.|-.=.+++++.|.+.|++.||+.. |...+|+.=.+-|+||
T Consensus 123 ~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 202 (359)
T d1m6ex_ 123 INGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG 202 (359)
T ss_dssp EEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred EEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4457778766556789999999988877642 3445666667788999
Q ss_pred eEEEE--ec-----cc------cccc-----cC-------------CCCCCccCCCHHHHHHHHHhCC-CEEEE
Q psy3185 255 GIWIN--LG-----PL------LYHY-----SN-------------MLNEDSIEPSYEVVKQVIQGLG-FVYEV 296 (298)
Q Consensus 255 G~~In--~g-----Pl------~y~~-----~~-------------~~~~~~~~ls~eEl~~~~~~~G-F~i~~ 296 (298)
|.++- +| |. .|.. .+ ..+-|....|.+|+++.+++-| |+|.+
T Consensus 203 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~ 276 (359)
T d1m6ex_ 203 GRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDH 276 (359)
T ss_dssp CEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEE
T ss_pred cEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeee
Confidence 99873 22 21 0100 00 0012555689999999998755 77765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0083 Score=47.58 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|||. |.++..+|+. |. .|.++|.++.=+..++.
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence 567999999975 5566667765 87 69999999998877765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.87 E-value=0.0036 Score=50.54 Aligned_cols=99 Identities=11% Similarity=0.161 Sum_probs=63.4
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|+|. |.-|...|+ .|..|++.|.+..-+...+..+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--------------------------------- 77 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--------------------------------- 77 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------------------------------
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------------------------------
Confidence 468999999997 555666665 499999999999877654443211
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
++.....+-..+...-...|+|+++-.+-..+-+.-.=+++-+.+|||.+.|.+
T Consensus 78 ----------~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 78 ----------RVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp ----------GSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred ----------cceeehhhhhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEe
Confidence 111111111111111145799999887775544444457788899999999853
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.85 E-value=0.0064 Score=49.83 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |. .|.++|.|+.-+..++.
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence 3578999999998 6678888864 65 69999999999988775
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.80 E-value=0.0072 Score=48.19 Aligned_cols=96 Identities=23% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
.++.+||+.| .|+|.++..+|+. |..|.++.-+..=...++. . ....++.
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~---~----Ga~~vi~-------------------- 76 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR---L----GVEYVGD-------------------- 76 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT---T----CCSEEEE--------------------
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc---c----ccccccc--------------------
Confidence 3567999987 4778899999876 9999988878764443332 1 0000000
Q ss_pred CCCCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
....|+.+-. .....+|+|+.+- -+ +.++...++|+|+|++|.+|.
T Consensus 77 ---------------~~~~~~~~~v~~~t~~~g~d~v~d~~-----g~--~~~~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 77 ---------------SRSVDFADEILELTDGYGVDVVLNSL-----AG--EAIQRGVQILAPGGRFIELGK 125 (183)
T ss_dssp ---------------TTCSTHHHHHHHHTTTCCEEEEEECC-----CT--HHHHHHHHTEEEEEEEEECSC
T ss_pred ---------------CCccCHHHHHHHHhCCCCEEEEEecc-----cc--hHHHHHHHHhcCCCEEEEEcc
Confidence 0011121111 1245799988554 22 467778899999999999874
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.76 E-value=0.011 Score=47.31 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCCCeEEEeccc--CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAG--LGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGcG--~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+++.+||+.|+| .|..+..||+. |.+|.++.-|.+-+..++.. .+ .+.|.
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~--Ga----~~vi~--------------------- 80 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI--GF----DAAFN--------------------- 80 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--TC----SEEEE---------------------
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh--hh----hhhcc---------------------
Confidence 357899998883 68899999986 89999999998866555431 00 00000
Q ss_pred CCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
....++.+. ......+|+|+-+ .- -++++...++|+|||.++.+|-
T Consensus 81 ---------------~~~~~~~~~~~~~~~~~Gvd~v~D~-----vG--~~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 81 ---------------YKTVNSLEEALKKASPDGYDCYFDN-----VG--GEFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp ---------------TTSCSCHHHHHHHHCTTCEEEEEES-----SC--HHHHHHHGGGEEEEEEEEECCC
T ss_pred ---------------cccccHHHHHHHHhhcCCCceeEEe-----cC--chhhhhhhhhccCCCeEEeecc
Confidence 000011110 0134568988743 33 3678999999999999998873
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.66 E-value=0.0083 Score=48.50 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=62.7
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+++.+||+.|+ |.|..+..||+. |.+|++.--|..-...++.+ .+ .+.|. +
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l--Ga----~~vi~-----~--------------- 83 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL--GA----KEVLA-----R--------------- 83 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT--TC----SEEEE-----C---------------
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc--cc----ceeee-----c---------------
Confidence 35678999995 778899999965 99999999888877666542 11 11110 0
Q ss_pred CCCCCCCCCCCCCeeEEecccccc--ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQV--YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~--~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
..++.+. ....+.+|+|+-+- - -.++....++|+|||.++.+|+.
T Consensus 84 -----------------~~~~~~~~~~~~~~gvD~vid~v-----g--g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 84 -----------------EDVMAERIRPLDKQRWAAAVDPV-----G--GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp -----------------C---------CCSCCEEEEEECS-----T--TTTHHHHHHTEEEEEEEEECSCC
T ss_pred -----------------chhHHHHHHHhhccCcCEEEEcC-----C--chhHHHHHHHhCCCceEEEeecc
Confidence 0000000 11346899887543 2 24588888999999999988864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.012 Score=46.74 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=34.5
Q ss_pred CCCCeEEEeccc--CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG--LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG--~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|+| .|.++..+|+. |..|.+++-|..-+..++.
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~ 71 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK 71 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence 356799998555 78899999986 9999999999997776654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.54 E-value=0.094 Score=44.54 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEF 149 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~ 149 (298)
+..+|+|+|||.|.-++.+|.+. -.|.|.++
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i 98 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK 98 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence 46799999999999999999774 45777766
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.061 Score=46.33 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=33.3
Q ss_pred CCeEEEecccCcHHHHHHHHcCC--e-EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY--V-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~--~-v~g~D~S~~Ml~~a~~ 159 (298)
+.+|+|+=||.|.+..-|.+.|+ + |.++|+........+.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~ 44 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKY 44 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHH
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHH
Confidence 57999999999998888877787 4 6699999998776654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.014 Score=51.56 Aligned_cols=41 Identities=12% Similarity=-0.075 Sum_probs=35.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~ 159 (298)
++..||++|.|.|.|+..|...| ..|+++|....+...-+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~ 85 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNA 85 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 46789999999999999998874 479999999998775544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.21 E-value=0.01 Score=46.83 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|| |.|.++..+++. |+ .|.++|.+..=+..++.
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence 35679999997 477777777664 75 79999999986666654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.92 E-value=0.024 Score=47.62 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=52.7
Q ss_pred eEEeccccccc--cCCCceeEEEec--ccc---------cCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 209 SMAAGDFLQVY--VHPNKWDCVATC--FFI---------DCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 209 ~~~~gDf~~~~--~~~~~fD~V~t~--ffi---------dta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.++.||-.++. .++++.|+|+|. |.+ +...-+...+++++++|||||.++..+...|... ..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~-----~~ 80 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE-----AG 80 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC-----TT
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccccc-----cc
Confidence 46778877653 257899999885 443 1223356788899999999997764333223221 12
Q ss_pred cCCCHHHHHHHHHhCCCEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~ 295 (298)
.......+..++...||.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (279)
T d1eg2a_ 81 SGDLISIISHMRQNSKMLLA 100 (279)
T ss_dssp BCCHHHHHHHHHHHCCCEEE
T ss_pred ccchhhHHHHHHhccCceee
Confidence 22335667778888898875
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.80 E-value=0.38 Score=40.27 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+||+-|+..| .++..|++.|++|..++.+..-+..+...+.. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~---~---------------------------- 53 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE---K---------------------------- 53 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T----------------------------
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---c----------------------------
Confidence 5779999998765 35677788899999999998766554432221 0
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhc-cCCeEEEEeccccccccCCCCCC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNIL-KPGGIWINLGPLLYHYSNMLNED 274 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~L-kpGG~~In~gPl~y~~~~~~~~~ 274 (298)
..++.+..+|+.+ ..++.++++.+.+.. .+-.++||....... .+
T Consensus 54 ---------~~~~~~~~~D~s~-------------------~~~~~~~~~~~~~~~~g~idilinnag~~~~------~~ 99 (258)
T d1ae1a_ 54 ---------GLNVEGSVCDLLS-------------------RTERDKLMQTVAHVFDGKLNILVNNAGVVIH------KE 99 (258)
T ss_dssp ---------TCCEEEEECCTTC-------------------HHHHHHHHHHHHHHTTSCCCEEEECCCCCCC------CC
T ss_pred ---------CCCceEEEeecCC-------------------HHHHHHHHHHHHHHhCCCcEEEecccccccc------Cc
Confidence 1244455566533 245777888888776 344567764332111 24
Q ss_pred ccCCCHHHHHHHHH
Q psy3185 275 SIEPSYEVVKQVIQ 288 (298)
Q Consensus 275 ~~~ls~eEl~~~~~ 288 (298)
..+++.+++.+.+.
T Consensus 100 ~~~~~~~~~~~~~~ 113 (258)
T d1ae1a_ 100 AKDFTEKDYNIIMG 113 (258)
T ss_dssp TTTCCHHHHHHHHH
T ss_pred cccCCHHHHhhhhh
Confidence 56688888887764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.11 Score=44.95 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=36.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
++.+|||..||.|.=+..||.. +..|+|+|.|..=+...+..+++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r 141 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR 141 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh
Confidence 4779999999999988888865 46799999999877766654443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.39 E-value=0.041 Score=43.88 Aligned_cols=42 Identities=14% Similarity=-0.032 Sum_probs=34.9
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|||. |-++..+|+. |. .|...|.++.=+..++.
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence 3578999999997 8888888876 76 59999999997777765
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.97 E-value=0.055 Score=41.99 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=31.4
Q ss_pred CCCCeEEEecccCcH-HHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGR-LAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Gr-la~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|||.-. ++..+|+. |.+|.+++.+..=+..++.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence 357899999998644 55555654 8899999999987766554
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.75 E-value=0.077 Score=43.68 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+++.+.+.+. .++..||||=||+|..+..-.+.|-...|+|+++.-+..|+..++
T Consensus 201 L~~~lI~~~s-----~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 201 LIERIIRASS-----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHC-----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-----CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 5566665554 257899999999999999999999999999999999999887654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.71 E-value=0.36 Score=41.16 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
-.+.||||+=||.|.+..-|-+.|++ |.++|+....+...+.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~ 51 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEM 51 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHH
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHH
Confidence 35789999999999999999999998 5679999998776553
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.68 E-value=0.07 Score=42.13 Aligned_cols=42 Identities=19% Similarity=0.080 Sum_probs=31.0
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.|||. |.++..+|+. |+. |.+.|.++.=+..++.
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence 3578999999985 4456666654 775 6788999987776654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.54 E-value=0.06 Score=45.77 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
+++.|.+... .++..||||=||+|..+......|....|+|+|+..+..|...+
T Consensus 239 L~~rlI~~~s-----~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl 292 (320)
T d1booa_ 239 LPEFFIRMLT-----EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 292 (320)
T ss_dssp HHHHHHHHHC-----CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGG
T ss_pred HHHHhhhhcc-----cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHH
Confidence 5566655543 35789999999999999999999999999999999999887644
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.099 Score=41.74 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..||+-|+ |+|..+..||+. |++|.++--|......++.. .+. +.+. .+ +
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l--Gad----~vi~------------------~~--~ 85 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL--GAS----RVLP------------------RD--E 85 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH--TEE----EEEE------------------GG--G
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh--ccc----cccc------------------cc--c
Confidence 458999874 588899999986 99999999999887766542 111 1110 00 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
.++... .....+|.|+ |+.-. .++....++|+|||.++++|..
T Consensus 86 ----------------~~~~~~-l~~~~~~~vv-----D~Vgg--~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 86 ----------------FAESRP-LEKQVWAGAI-----DTVGD--KVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp ----------------SSSCCS-SCCCCEEEEE-----ESSCH--HHHHHHHHTEEEEEEEEECCCT
T ss_pred ----------------HHHHHH-HHhhcCCeeE-----EEcch--HHHHHHHHHhccccceEeeccc
Confidence 011111 1245677764 44432 5788999999999999998753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.50 E-value=0.063 Score=42.21 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=30.3
Q ss_pred CCCeEEEecccCc-HHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG-RLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~G-rla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++..||+.|||.. .++..+|+. |. .|.++|.++.=+..++.
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~ 75 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER 75 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence 4679999999854 455667754 65 68999999986666654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.45 E-value=0.28 Score=37.89 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=26.8
Q ss_pred eEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 122 NILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 122 ~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
+|=.+|+|.=. +|..|++.||+|.+.|.++.-+...
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~ 39 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV 39 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHH
Confidence 57778777632 5555777899999999999866543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.29 E-value=0.48 Score=35.11 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.5
Q ss_pred CeEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml~~a 157 (298)
.+|++.|+ |+++..+| +.|++|+.+|.++..+...
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~ 39 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKA 39 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhh
Confidence 36788776 77766665 4599999999999876543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.17 E-value=0.051 Score=45.36 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=36.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHH--HHHHHcCCeEEEeeCCH
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLA--FEIARRGYVCQGNEFSL 151 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla--~ela~~G~~v~g~D~S~ 151 (298)
|+..+.....-++.. .++.+|+++|+|.+.|+ +.|+++|++|+-+|-+.
T Consensus 13 ~~~~~~~~~~~~~~~---~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 13 YEEFLEIARNGLKAT---SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp HHHHHHHHHHCSCCC---SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HHHHHHHHhcCCCCC---CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 555666666555432 34569999999999975 55889999999999765
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.15 E-value=0.087 Score=41.70 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..||+-|+ |.|.++..||+. |+.|.+.--|..-...++.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~ 66 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ 66 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh
Confidence 3557999884 789999999987 9999999988876655543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.99 E-value=0.029 Score=45.55 Aligned_cols=109 Identities=22% Similarity=0.203 Sum_probs=62.6
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|+|+ |.-|...|. .|..|++.|.+..-+...+.+..+ |+. +.+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-----------~i~----------------~~~ 80 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----------FIT----------------VDD 80 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----------ECC----------------C--
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-----------eEE----------------Eec
Confidence 467999999996 555666665 499999999999877665543211 110 000
Q ss_pred CCCCCCCCCCCeeEEeccccccc------------cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY------------VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~------------~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
..+ .+..-..|...++. ..-..-|+|++.-.+--.+-+.-.=+.+-+.+|||.+.|.+
T Consensus 81 ~~~------~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 81 EAM------KTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp ---------------------------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred ccc------ccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEE
Confidence 000 00000001111100 00146799999888775554444567788899999999853
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.12 Score=41.20 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCeEEEec--ccCcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 120 DVNILVPG--AGLGRLAFEIARR-GYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 120 ~~~VLdpG--cG~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+..||+-| .|.|..+..+|+. |.. |.++.-|.+-......-+ ....+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~------gad~v----------------------- 81 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL------GFDAA----------------------- 81 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS------CCSEE-----------------------
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc------cceEE-----------------------
Confidence 36899988 5899999999995 775 777777766543221100 00000
Q ss_pred CCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
++....|+.+... .+..+|+|+-+ .- -++++...++|+|||.++.+|.
T Consensus 82 ------------i~~~~~~~~~~~~~~~~~GvDvv~D~-----vG--g~~~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 82 ------------VNYKTGNVAEQLREACPGGVDVYFDN-----VG--GDISNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp ------------EETTSSCHHHHHHHHCTTCEEEEEES-----SC--HHHHHHHHTTEEEEEEEEEC--
T ss_pred ------------eeccchhHHHHHHHHhccCceEEEec-----CC--chhHHHHhhhccccccEEEecc
Confidence 0001112221111 23569988744 33 2578899999999999998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.08 E-value=0.18 Score=39.74 Aligned_cols=42 Identities=14% Similarity=-0.140 Sum_probs=32.5
Q ss_pred CCCCeEEEecccCcH-HHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGR-LAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Gr-la~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|||-.. ++..+|+. |. .|.++|.+..-+..++.
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 467899999998544 45556654 76 69999999998888765
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.92 E-value=0.38 Score=39.86 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCeEEEecc----cCcH-HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGA----GLGR-LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGc----G~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.++|+-|+ |.|+ ++..|++.|++|...+.+......+..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 52 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK 52 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 4678999996 5677 888899999999999998776665554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.85 E-value=0.15 Score=42.46 Aligned_cols=57 Identities=14% Similarity=0.001 Sum_probs=47.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKC 164 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~ 164 (298)
+++.+.+.+. .++..||||=||+|..+..-.+.|-...|+|+++.-...|...+++.
T Consensus 196 L~~~~I~~~s-----~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 196 VIERLVRALS-----HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHS-----CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHhhc-----CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 4555555543 25779999999999999999999999999999999999888876653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.75 E-value=1.7 Score=35.97 Aligned_cols=41 Identities=22% Similarity=0.134 Sum_probs=32.3
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..+|+-|++.| + ++..||+.|+.|..+|.+..-+.....
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA 47 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3668999997655 3 677888899999999999987765544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=91.67 E-value=0.61 Score=36.38 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=37.6
Q ss_pred ceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|.|+++- ...+.+.+.++.+...++||-+||+.+..... ...++.+.+.+.|...+.
T Consensus 66 ~~~~ii~~~--~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~------------~~~~~~~~~~~~g~~~ld 124 (176)
T d2pgda2 66 KPRRIILLV--KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYR------------DTMRRCRDLKDKGILFVG 124 (176)
T ss_dssp SSCEEEECS--CTTHHHHHHHHHHHHHCCTTCEEEECSCCCHH------------HHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEec--CchHHHHHHHHHHHhccccCcEEEecCcchhH------------HHHHHHHHHHhcCCceec
Confidence 345555542 34456777888999999999999986532111 124556666677776653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.23 E-value=1.8 Score=35.61 Aligned_cols=38 Identities=16% Similarity=-0.039 Sum_probs=30.4
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++..+|+-|++.| -++..|++.|++|..+|.+..-+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~ 45 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKA 45 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 4678999998766 3677788889999999999876543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=91.03 E-value=0.26 Score=39.07 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=23.6
Q ss_pred CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 223 NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+..|+|+-+ .- -..+....++|+|||.++.+|
T Consensus 106 ~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 106 GEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp CCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred CCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 457887743 32 245677889999999999876
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.00 E-value=2.2 Score=35.04 Aligned_cols=41 Identities=22% Similarity=0.037 Sum_probs=30.4
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..+|+-|++.| + ++..||+.|++|..++.+..-+.....
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 4667889997554 2 466667789999999999987765443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=90.98 E-value=0.63 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=26.2
Q ss_pred CCCeEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml 154 (298)
.-.+|..+| |+|.++..|| +.||+|++.|.+....
T Consensus 8 ~~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~ 46 (152)
T d2pv7a2 8 DIHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV 46 (152)
T ss_dssp TCCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred CCCeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence 345999999 5666666555 4699999999987643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.90 E-value=0.51 Score=37.05 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=32.9
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
.++..||+.|||- |-++..+++. |. .|.++|.+.+-+..|+.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence 3577899999985 4455666654 74 69999999999998876
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.61 E-value=0.23 Score=40.60 Aligned_cols=71 Identities=10% Similarity=0.224 Sum_probs=46.1
Q ss_pred EEecccccccc--CCCceeEEEec--ccc-----cCcch-------HHHHHHHHHHhccCCeEEEE-eccccccccCCCC
Q psy3185 210 MAAGDFLQVYV--HPNKWDCVATC--FFI-----DCANN-------IVSFIETIFNILKPGGIWIN-LGPLLYHYSNMLN 272 (298)
Q Consensus 210 ~~~gDf~~~~~--~~~~fD~V~t~--ffi-----dta~n-------~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~~~~ 272 (298)
+..||..++.. ++++.|+|+|. |.+ |...+ +...+++++++|||||.++. ..|.
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~--------- 77 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF--------- 77 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH---------
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCch---------
Confidence 67888877542 57899998885 443 22222 34567789999999997653 3331
Q ss_pred CCccCCCHHHHHHHHHhCCCEEE
Q psy3185 273 EDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 273 ~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
....+...+...||...
T Consensus 78 ------~~~~~~~~~~~~g~~~~ 94 (256)
T d1g60a_ 78 ------NCAFICQYLVSKGMIFQ 94 (256)
T ss_dssp ------HHHHHHHHHHHTTCEEE
T ss_pred ------hhhhhhhhhhcccceee
Confidence 13346667777888754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.59 E-value=1.6 Score=36.33 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=32.1
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..+|+-|++.|- ++..||+.|++|..+|.+..-+.....
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 36689999987662 677788889999999999887765443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.46 E-value=0.69 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=27.1
Q ss_pred eEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-.+|.|.= .+|..|++.||+|.+.|.+..-...
T Consensus 3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~ 39 (162)
T d3cuma2 3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDG 39 (162)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhh
Confidence 6888887753 4777788889999999999875443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=3.1 Score=34.22 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..||+-|++.|- ++..|++.|+.|...+-+..-+.....
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 35689999987663 566677789999999999987765443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.22 E-value=1.8 Score=33.27 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=26.5
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|=.+|+|. .-++..|++.||+|++.|.++.-...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~ 39 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEE 39 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 3576777666 34666677789999999999885543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.17 E-value=2.4 Score=35.06 Aligned_cols=38 Identities=16% Similarity=-0.016 Sum_probs=28.8
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++..+|+-|++.|- ++..|++.|++|..+|.+..-+..
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~ 45 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQK 45 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 46689999976552 456677789999999999876553
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=90.16 E-value=1.1 Score=37.35 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=32.1
Q ss_pred CeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~ 158 (298)
.+|||+=||.|.+..-|-+.|++ +.++|+........+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~ 39 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE 39 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHH
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 47999999999999888888998 559999998776554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.96 E-value=0.9 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=29.9
Q ss_pred CeEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 121 VNILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 121 ~~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
.+|-++|||... +|..|+++|++|+..|-++.-+...+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~ 41 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ 41 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999866 45568889999999999987555443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.13 Score=42.15 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCCCeEEEecccCcHHH--HHHHHcCCeEEEeeCCH
Q psy3185 118 PKDVNILVPGAGLGRLA--FEIARRGYVCQGNEFSL 151 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla--~ela~~G~~v~g~D~S~ 151 (298)
++..||+++|+|.+.|+ ++|+++|++|+-+|-+.
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35779999999999975 56889999999999865
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=3.1 Score=35.08 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++..+|+-|++.|- ++..|++.|++|..++.+..-+..+.
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~ 53 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA 53 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46789999976552 45667788999999999988775443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=89.43 E-value=3 Score=33.92 Aligned_cols=37 Identities=27% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++..+|+-|++.|- +|..|++.|+.|..++-|..-+.
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~ 43 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA 43 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 36789999987652 56667778999999999998654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.28 Score=39.35 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=34.1
Q ss_pred CeEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 121 VNILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 121 ~~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+|-++|+|+= .+|..+|..|+.|+..|.++..+..++..+.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~ 48 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE 48 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence 48999999873 3567778889999999999999987766443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.17 E-value=4.2 Score=33.39 Aligned_cols=40 Identities=20% Similarity=0.093 Sum_probs=31.4
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++..+|+-|++.|- ++..|++.|++|..+|.+..-+....
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCL 49 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46789999987552 67778888999999999988765443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.97 E-value=2.7 Score=34.78 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..+|+-|++.| -++..||+.|++|..++.+..-+.....
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ 47 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4668999998766 3677788889999999999987766554
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=88.94 E-value=3.1 Score=34.03 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=30.1
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++..+|+-|++.| -++..||+.|++|..++.+..-+....
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~ 47 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA 47 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4678899997655 256677888999999999987665443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.93 E-value=4.2 Score=33.37 Aligned_cols=40 Identities=30% Similarity=0.226 Sum_probs=32.3
Q ss_pred CCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+..+|+-|++.|- ++..||+.|++|..+|.+..-+.....
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 46 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA 46 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5689999986653 678888999999999999987765543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.77 E-value=0.23 Score=41.86 Aligned_cols=85 Identities=24% Similarity=0.373 Sum_probs=52.1
Q ss_pred CeeEEecccccccc--CCCceeEEEec--cccc------------CcchHHHHHHHHHHhccCCeEEE-EeccccccccC
Q psy3185 207 DFSMAAGDFLQVYV--HPNKWDCVATC--FFID------------CANNIVSFIETIFNILKPGGIWI-NLGPLLYHYSN 269 (298)
Q Consensus 207 ~~~~~~gDf~~~~~--~~~~fD~V~t~--ffid------------ta~n~~~yl~~I~~~LkpGG~~I-n~gPl~y~~~~ 269 (298)
+=.+..||-.++.. ++++.|+|+|. |.+. ....+.+.+..++++|||+|.++ ++++. |....
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~-~~~~~ 90 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-YMKGV 90 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-EETTE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch-hhccc
Confidence 44789999877543 57999999985 5442 12335677999999999999764 45442 21110
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..........+.......||...
T Consensus 91 ---~~~~~~~~~~~~~~~~~~~~~~~ 113 (320)
T d1booa_ 91 ---PARSIYNFRVLIRMIDEVGFFLA 113 (320)
T ss_dssp ---EEECCHHHHHHHHHHHTTCCEEE
T ss_pred ---ccccchhHHHHHHHHHhcCceEe
Confidence 01112234555666667777654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.71 E-value=2.1 Score=35.24 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=29.2
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.++|+-|++.| -++..|++.|++|..+|.+..-+.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~ 43 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAAR 43 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 3568999998766 367777888999999999987554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.62 E-value=4.8 Score=32.99 Aligned_cols=40 Identities=25% Similarity=0.195 Sum_probs=32.2
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++..||+-|++.|- ++..|++.|+.|..++-+..-+....
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECL 49 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57799999987663 67778888999999999988765443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.24 E-value=3.3 Score=33.94 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=29.7
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++..+|+-|++.| -++..|++.|+.|..+|.+..-+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~ 45 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQ 45 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 4668899998655 3677778889999999999876653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.23 E-value=1.7 Score=35.91 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=29.4
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++..||+-|++.|- ++..||+.|++|..++.+..-+..
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~ 48 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE 48 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 46789999976552 667778889999999998876543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=88.19 E-value=3.7 Score=33.77 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=30.5
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++..||+-|++.| .++..|++.|+.|..+|.+..-+.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~ 43 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA 43 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 5678999998876 467788889999999999987554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.31 E-value=5.4 Score=32.31 Aligned_cols=39 Identities=31% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++..+|+-|++.| -++..|++.|++|..++-+..-+...
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~ 44 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAI 44 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4568888897655 26667788899999999998766543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=6.1 Score=32.26 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++..+|+-|++.| + ++..||+.|+.|..++.+..-+....
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~ 52 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4678999987544 3 55667778999999999988765443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.88 E-value=6.7 Score=31.91 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=30.9
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
++..+|+-|++.| -++..||+.|++|..+|.+..-+...
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~ 45 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEA 45 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4678999998655 26777888899999999998766543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.46 E-value=0.19 Score=39.24 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=27.3
Q ss_pred CCeEEEecccCcHH--HHHHHHcCCeEEEeeCCH
Q psy3185 120 DVNILVPGAGLGRL--AFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG~Grl--a~ela~~G~~v~g~D~S~ 151 (298)
.-.|+++|+|.|.+ |..||++|++|+-+|-..
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 45699999999996 456899999999999875
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.46 Score=40.65 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=22.5
Q ss_pred CeEEEecccCcHHHHHHHH----cCCeEEEeeC
Q psy3185 121 VNILVPGAGLGRLAFEIAR----RGYVCQGNEF 149 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~----~G~~v~g~D~ 149 (298)
.|||+.| |+|.++..|++ +|++|+|+|-
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4799999 78887777654 5999999984
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.76 E-value=0.28 Score=42.26 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=28.2
Q ss_pred CCeEEEecccCcHH--HHHHHHcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAGLGRL--AFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG~Grl--a~ela~~G~~v~g~D~S~~ 152 (298)
..+|+++|||...+ |+.|+++|++|+-+|-+.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46999999999986 4558888999999998875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=5.9 Score=32.20 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
-.+..||+-|++.|- +|.+||++|++|..+|.+..-+...
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~ 47 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET 47 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 346678888987763 7788888999999999999877543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.41 E-value=5.9 Score=32.31 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=29.1
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++..+|+-|++.| -++..|++.|++|..+|.+..-+.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~ 44 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGR 44 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 4668999998665 266778888999999999987554
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.23 E-value=0.3 Score=39.35 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=26.2
Q ss_pred CeEEEecccCcHHH--HHHHHcCCeEEEeeCCH
Q psy3185 121 VNILVPGAGLGRLA--FEIARRGYVCQGNEFSL 151 (298)
Q Consensus 121 ~~VLdpGcG~Grla--~ela~~G~~v~g~D~S~ 151 (298)
.||+++|+|.+.|+ ++|+++|++|+-+|-+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 58999999988865 56888999999999753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.69 E-value=5.5 Score=32.54 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=31.0
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..+|+-|++.| + ++..||+.|++|..++.+..-+.....
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3567889888544 3 566778889999999999987765544
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=84.37 E-value=0.43 Score=38.16 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=26.2
Q ss_pred CCCeEEEecccCcHH--HHHHHHcCCeEEEeeC
Q psy3185 119 KDVNILVPGAGLGRL--AFEIARRGYVCQGNEF 149 (298)
Q Consensus 119 ~~~~VLdpGcG~Grl--a~ela~~G~~v~g~D~ 149 (298)
+..+|+++|+|...+ |+.|+++|++|+-+|-
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier 37 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeC
Confidence 356899999999886 5668899999999995
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.11 E-value=3.1 Score=31.10 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCeEEEecccCcHHHHHHH----HcCCeEEEe--eCCHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIA----RRGYVCQGN--EFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela----~~G~~v~g~--D~S~~Ml~~a 157 (298)
++.+||++|+|. +|.+-| +.|.+|+-+ |+|+.+...+
T Consensus 12 ~gkrvLViGgG~--va~~ka~~Ll~~GA~VtVvap~~~~~l~~~~ 54 (150)
T d1kyqa1 12 KDKRILLIGGGE--VGLTRLYKLMPTGCKLTLVSPDLHKSIIPKF 54 (150)
T ss_dssp TTCEEEEEEESH--HHHHHHHHHGGGTCEEEEEEEEECTTHHHHH
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHH
Confidence 577999999965 555443 459886655 7788766543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=83.96 E-value=1.4 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCeEEEecccCc--HHHHHHHHcCCeEEEe--eCCHHHH
Q psy3185 118 PKDVNILVPGAGLG--RLAFEIARRGYVCQGN--EFSLFML 154 (298)
Q Consensus 118 ~~~~~VLdpGcG~G--rla~ela~~G~~v~g~--D~S~~Ml 154 (298)
-++.+||++|.|-= |-+..|.+.|.+|+-+ +.++.+.
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~ 50 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT 50 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH
Confidence 35779999998753 2333455568886654 5555543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=83.89 E-value=0.32 Score=39.25 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=25.8
Q ss_pred CeEEEecccCcHHH--HHHHHcCCeEEEeeCCH
Q psy3185 121 VNILVPGAGLGRLA--FEIARRGYVCQGNEFSL 151 (298)
Q Consensus 121 ~~VLdpGcG~Grla--~ela~~G~~v~g~D~S~ 151 (298)
.+|+++|+|.+.|+ +.|+++|++|+-+|-+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 37999999988864 56888999999999753
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.83 E-value=0.26 Score=35.23 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=25.3
Q ss_pred CCCeEEEec---ccCcHHHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPG---AGLGRLAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpG---cG~Grla~ela~~G~~v~g~D~S 150 (298)
...+|..+| +|.+-||..|.++||.|+|.|..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~ 41 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA 41 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 456888886 34445778889999999999985
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=83.72 E-value=8.6 Score=30.98 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++..+|+-|++.| + ++..|++.|++|..+|.+..-+..
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~ 44 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLRE 44 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3668999998655 3 466677889999999999875543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=83.33 E-value=0.86 Score=36.04 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=31.6
Q ss_pred CeEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+|-++|+|+=. +|..+|..|++|+..|.++..+..+..
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~ 45 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLA 45 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhh
Confidence 479999998743 455678889999999999998876654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.32 E-value=8.4 Score=31.40 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+-|++.|- +|..||++|++|..++-+..-+....
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~ 55 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV 55 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46789999997763 67778888999999999998776543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.06 E-value=9.4 Score=31.08 Aligned_cols=37 Identities=32% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCCeEEEecccCc---HHHHHHHHcCCeEEEeeCC-HHHHH
Q psy3185 119 KDVNILVPGAGLG---RLAFEIARRGYVCQGNEFS-LFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~G---rla~ela~~G~~v~g~D~S-~~Ml~ 155 (298)
++.+||+-|++.| .++..|++.|++|...+.+ ...+.
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~ 57 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAE 57 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHH
Confidence 4678999998777 3778888899999999886 44443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.97 E-value=3.2 Score=33.98 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+..+|+-|++.| + ++..||+.|++|..+|.+..-+.....
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 567899897644 2 566677789999999999887765443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=81.24 E-value=0.61 Score=37.67 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=27.1
Q ss_pred CCCeEEEecccCcHHHH--HHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGLGRLAF--EIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~--ela~~G~~v~g~D~S~ 151 (298)
...||+++|+|.+.++. .|+++|++|+-+|-++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46799999999998654 5778899999999643
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.86 E-value=1 Score=34.08 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
..+||++|+|. |+ +|..|++.|++|+.+|-+..-.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a 38 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESA 38 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHH
Confidence 46899999963 33 5566777899999999999843
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=80.68 E-value=11 Score=30.45 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=28.3
Q ss_pred CCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
++..||+-|++.| + ++..|++.|+.|..+|.+..-...
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~ 44 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV 44 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3668999997554 2 566777889999999998765443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.24 E-value=13 Score=30.03 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=28.6
Q ss_pred CCeEEEecccCcH---HHHHHHHcCCeEEEeeCC-HHHHHHH
Q psy3185 120 DVNILVPGAGLGR---LAFEIARRGYVCQGNEFS-LFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S-~~Ml~~a 157 (298)
+..+|+-|++.|- +|..||+.|++|..++.+ ..-+...
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~ 45 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKV 45 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence 5678998887653 677788899999999986 4545433
|