Psyllid ID: psy3208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAGPGLGANGLGAAPGLGSNGLGSGLGSNGLGSGLGSGPGEYYNDTEEQEDTEHTSSENLHKSDSF
Secondary Structure (PSIPRED)
ccccccEEEEEEEccccHHccccccccccEEEEEccEEcccccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcEEEEEEEEccccHHHHHccccccEEEEEEccEEcccccHHHHHHHHHccccEEEEEEEEcHccccccHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MNPNETVIVIRSLvpggvaqldarlipgdrllsvnetdlnnASLDQAVQALkgaprgivkigvakplpipdsscsqvshagpglganglgaapglgsnglgsglgsnglgsglgsgpgeyyndteeqedtehtssenlhksdsf
Flexible Loop (DISEMBL)
MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAGPGLGANGLGAAPGLGSNGLGSGLGSNGLGSGLGSGPGEYYNDTEeqedtehtssenlhksdsf
Low Complexity Region (SEG)
MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAgpglganglgaapglgsnglgsglgsnglgsglgsgpgEYYNDTEEQEDTEHTSSENLHKSDSF
Disordered region (IsUnstruct)
*****TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP******************************************************************************
Disordered Region (DISOPRED)
***NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA********************************************L***********************************
Disordered Region (DISEMBL)
MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAGPGLGANGLGAAPGLGSNGLGSGLGSNGLGSGLGSGPGEYYN**********************
Disordered Region (DISPRO)
*NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDS*************************************GSGL*SGPGEYYNDTEEQED***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAGPGLGANGLGAAPGLGSNGLGSGLGSNGLGSGLGSGPGEYYNDTEEQEDTEHTSSENLHKSDSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9NB04	871	Patj homolog OS=Drosophil	yes	N/A	0.548	0.090	0.725	2e-26
O75970	2070	Multiple PDZ domain prote	yes	N/A	0.472	0.032	0.652	5e-21
O55164	2054	Multiple PDZ domain prote	yes	N/A	0.472	0.033	0.652	6e-21
Q8VBX6	2055	Multiple PDZ domain prote	yes	N/A	0.472	0.033	0.652	6e-21
Q63ZW7	1834	InaD-like protein OS=Mus	no	N/A	0.458	0.035	0.552	8e-15
Q8NI35	1801	InaD-like protein OS=Homo	no	N/A	0.458	0.036	0.552	1e-13
Q92796	817	Disks large homolog 3 OS=	no	N/A	0.437	0.077	0.437	4e-06
Q62936	849	Disks large homolog 3 OS=	no	N/A	0.437	0.074	0.437	4e-06
P70175	849	Disks large homolog 3 OS=	no	N/A	0.437	0.074	0.437	4e-06
Q15700	870	Disks large homolog 2 OS=	no	N/A	0.638	0.105	0.381	1e-05

>sp|Q9NB04|PATJ_DROME Patj homolog OS=Drosophila melanogaster GN=Patj PE=1 SV=2

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 69/80 (86%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++PN+T+IVIRSLVPGGVAQLD RLIPGDRLL VN  +L NASLDQAVQALKGA +G+V+
Sbjct: 749 LDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQAVQALKGASKGVVR 808

Query: 61  IGVAKPLPIPDSSCSQVSHA 80
           IGVAKPLP+ D+S    S+A
Sbjct: 809 IGVAKPLPMTDNSLKACSNA 828

Involved in cell polarity establishment. Probably participates in the assembly, positioning and maintenance of adherens junctions via its interaction with the SAC complex.
Drosophila melanogaster (taxid: 7227)

>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++P  TVI+IRSLVPGG+A+ D RL+PGDRL+ VN+ +L N+SL++AV+ALKGAP G V+
Sbjct: 721 IDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMFVNDVNLENSSLEEAVEALKGAPSGTVR 780

Query: 61  IGVAKPLPI 69
           IGVAKPLP+
Sbjct: 781 IGVAKPLPL 789

Interacts with HTR2C and provokes its clustering at the cell surface (By similarity). Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|O55164|MPDZ_RAT Multiple PDZ domain protein OS=Rattus norvegicus GN=Mpdz PE=1 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++P  TVIVIRSLVPGG+A+ D RL PGDRL+ VN+ +L N++L++AV+ALKGAP G+V+
Sbjct: 713 IDPANTVIVIRSLVPGGIAEKDGRLFPGDRLMFVNDINLENSTLEEAVEALKGAPSGMVR 772

Query: 61  IGVAKPLPI 69
           IGVAKPLP+
Sbjct: 773 IGVAKPLPL 781

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q8VBX6|MPDZ_MOUSE Multiple PDZ domain protein OS=Mus musculus GN=Mpdz PE=1 SV=2

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++P  TVIVIRSLVPGG+A+ D RL PGDRL+ VN+ +L N++L++AV+ALKGAP G+V+
Sbjct: 714 IDPANTVIVIRSLVPGGIAEKDGRLFPGDRLMFVNDINLENSTLEEAVEALKGAPSGMVR 773

Query: 61  IGVAKPLPI 69
           IGVAKPLP+
Sbjct: 774 IGVAKPLPL 782

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q63ZW7|INADL_MOUSE InaD-like protein OS=Mus musculus GN=Inadl PE=1 SV=2

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 50/67 (74%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++P  +VIVIRSLV  GVA+    L+PGDRL+SVNE  L+NA+L +AV+ LK  P G+V 
Sbjct: 709 LDPTRSVIVIRSLVADGVAERSGELLPGDRLVSVNEFSLDNATLAEAVEVLKAVPPGVVH 768

Query: 61  IGVAKPL 67
           +G+ KPL
Sbjct: 769 LGICKPL 775

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Mus musculus (taxid: 10090)

>sp|Q8NI35|INADL_HUMAN InaD-like protein OS=Homo sapiens GN=INADL PE=1 SV=3

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++P  +VIVIRSLV  GVA+    L+PGDRL+SVNE  L+N SL +AV+ LK  P G+V 
Sbjct: 707 LDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVH 766

Query: 61  IGVAKPL 67
           +G+ KPL
Sbjct: 767 LGICKPL 773

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Homo sapiens (taxid: 9606)

>sp|Q92796|DLG3_HUMAN Disks large homolog 3 OS=Homo sapiens GN=DLG3 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I I  ++ GG AQ D RL  GDRLL+VN T+L +   ++AV +LK     +V + 
Sbjct: 250 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLK 308

Query: 63  VAKP 66
           VAKP
Sbjct: 309 VAKP 312

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Homo sapiens (taxid: 9606)

>sp|Q62936|DLG3_RAT Disks large homolog 3 OS=Rattus norvegicus GN=Dlg3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I I  ++ GG AQ D RL  GDRLL+VN T+L +   ++AV +LK     +V + 
Sbjct: 268 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLK 326

Query: 63  VAKP 66
           VAKP
Sbjct: 327 VAKP 330

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Rattus norvegicus (taxid: 10116)

>sp|P70175|DLG3_MOUSE Disks large homolog 3 OS=Mus musculus GN=Dlg3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I I  ++ GG AQ D RL  GDRLL+VN T+L +   ++AV +LK     +V + 
Sbjct: 268 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLK 326

Query: 63  VAKP 66
           VAKP
Sbjct: 327 VAKP 330

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Mus musculus (taxid: 10090)

>sp|Q15700|DLG2_HUMAN Disks large homolog 2 OS=Homo sapiens GN=DLG2 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  ++PGG A  D RL   D +L VNE D++  S  +AV+ALK A   IV++ V +  
Sbjct: 127 IFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAG-SIVRLYVRRRR 185

Query: 68  PIPDSSCSQVSHAGP-GLG---ANGLGAAPGLGSNGL 100
           PI ++        GP GLG   A G+G     G N +
Sbjct: 186 PILETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSI 222

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
242008812	1008	conserved hypothetical protein [Pediculu	0.548	0.078	0.825	4e-28
340718529	2578	PREDICTED: hypothetical protein LOC10064	0.520	0.029	0.792	4e-27
270014414	792	hypothetical protein TcasGA2_TC001640 [T	0.493	0.089	0.847	6e-27
189233650	785	PREDICTED: similar to GA11344-PA, partia	0.493	0.090	0.847	6e-27
345492914	1232	PREDICTED: multiple PDZ domain protein-l	0.506	0.059	0.769	7e-27
383858804	1110	PREDICTED: patj homolog [Megachile rotun	0.534	0.069	0.807	2e-26
307213315	908	Patj-like protein [Harpegnathos saltator	0.493	0.078	0.833	2e-26
328781201	1046	PREDICTED: patj homolog [Apis mellifera]	0.486	0.066	0.833	3e-26
403182586	791	AAEL017560-PA [Aedes aegypti]	0.520	0.094	0.786	3e-26
380028130	1109	PREDICTED: patj homolog [Apis florea]	0.534	0.069	0.807	3e-26

>gi|242008812|ref|XP_002425192.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508908|gb|EEB12454.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 73/80 (91%), Gaps = 1/80 (1%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           M+PNETVIVIRSLVPGGVAQLD +LIPGDRL+ VN+T+L NASLDQAVQALKGAP+GIV+
Sbjct: 879 MDPNETVIVIRSLVPGGVAQLDGQLIPGDRLVFVNDTNLENASLDQAVQALKGAPKGIVR 938

Query: 61  IGVAKPLPIPDS-SCSQVSH 79
           IGVAKPLPIPDS S  QVS 
Sbjct: 939 IGVAKPLPIPDSVSNCQVSE 958

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718529|ref|XP_003397718.1| PREDICTED: hypothetical protein LOC100647267 [Bombus terrestris]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 68/77 (88%)

Query: 1    MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
            MNPNETVIVIRSLVPGGVAQ+D +LIPGDRLL VN+  L NA+LDQAVQALKGAP+G V+
Sbjct: 969  MNPNETVIVIRSLVPGGVAQVDGQLIPGDRLLFVNDIALENATLDQAVQALKGAPKGTVR 1028

Query: 61   IGVAKPLPIPDSSCSQV 77
            IGVAKPLPIPDS   +V
Sbjct: 1029 IGVAKPLPIPDSIVQRV 1045

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014414|gb|EFA10862.1| hypothetical protein TcasGA2_TC001640 [Tribolium castaneum]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 68/72 (94%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++PN+TVIVIRSLVPGGVAQLD RLIPGDRLL VN+T L NASLDQAVQALKGAP+GIV+
Sbjct: 698 IDPNDTVIVIRSLVPGGVAQLDGRLIPGDRLLFVNDTVLENASLDQAVQALKGAPKGIVR 757

Query: 61  IGVAKPLPIPDS 72
           IGVAKPLPIPD+
Sbjct: 758 IGVAKPLPIPDT 769

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233650|ref|XP_001813830.1| PREDICTED: similar to GA11344-PA, partial [Tribolium castaneum]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 68/72 (94%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++PN+TVIVIRSLVPGGVAQLD RLIPGDRLL VN+T L NASLDQAVQALKGAP+GIV+
Sbjct: 698 IDPNDTVIVIRSLVPGGVAQLDGRLIPGDRLLFVNDTVLENASLDQAVQALKGAPKGIVR 757

Query: 61  IGVAKPLPIPDS 72
           IGVAKPLPIPD+
Sbjct: 758 IGVAKPLPIPDT 769

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492914|ref|XP_003426953.1| PREDICTED: multiple PDZ domain protein-like [Nasonia vitripennis]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 70/78 (89%)

Query: 1    MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
            MNPNETVIVIRSLVPGGVAQ+D +LIPGDRLL VN+  L NA+LDQAVQALKGAP+G+V+
Sbjct: 957  MNPNETVIVIRSLVPGGVAQVDGQLIPGDRLLFVNDIGLENATLDQAVQALKGAPKGVVR 1016

Query: 61   IGVAKPLPIPDSSCSQVS 78
            IGVAKPLPIPDS   +++
Sbjct: 1017 IGVAKPLPIPDSIAQRLT 1034

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858804|ref|XP_003704889.1| PREDICTED: patj homolog [Megachile rotundata]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 69/78 (88%), Gaps = 1/78 (1%)

Query: 1    MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
            MNPNETVIVIRSLVPGGVAQ+D +LIPGDRLL VN+  L NA+LDQAVQALKGAP+G V+
Sbjct: 970  MNPNETVIVIRSLVPGGVAQVDGQLIPGDRLLFVNDIALENATLDQAVQALKGAPKGTVR 1029

Query: 61   IGVAKPLPIPDSSCSQVS 78
            IGVAKPLPIPD S  QVS
Sbjct: 1030 IGVAKPLPIPD-SIVQVS 1046

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213315|gb|EFN88767.1| Patj-like protein [Harpegnathos saltator]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 66/72 (91%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           MNPNETVIVIRSLVPGGVAQ+D +LIPGDRLL VN+  L NA+LDQAVQALKGAP+G V+
Sbjct: 768 MNPNETVIVIRSLVPGGVAQVDGQLIPGDRLLFVNDIALENATLDQAVQALKGAPKGTVR 827

Query: 61  IGVAKPLPIPDS 72
           IGVAKPLPIPDS
Sbjct: 828 IGVAKPLPIPDS 839

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781201|ref|XP_003249938.1| PREDICTED: patj homolog [Apis mellifera]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 66/72 (91%)

Query: 1    MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
            MNPNETVIVIRSLVPGGVAQ+D +LIPGDRLL VN+  L NA+LDQAVQALKGAP+G V+
Sbjct: 969  MNPNETVIVIRSLVPGGVAQVDGQLIPGDRLLFVNDIALENATLDQAVQALKGAPKGTVR 1028

Query: 61   IGVAKPLPIPDS 72
            IGVAKPLPIPDS
Sbjct: 1029 IGVAKPLPIPDS 1040

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182586|gb|EJY57494.1| AAEL017560-PA [Aedes aegypti]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/75 (78%), Positives = 69/75 (92%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++PN+T+IVIRSLVPGGVAQLD RLIPGDRLL VN+T L NASLDQAVQALKGAP+G+V+
Sbjct: 678 LDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNDTVLENASLDQAVQALKGAPKGVVR 737

Query: 61  IGVAKPLPIPDSSCS 75
           IGVAKPLP+ DSS +
Sbjct: 738 IGVAKPLPMQDSSIT 752

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028130|ref|XP_003697762.1| PREDICTED: patj homolog [Apis florea]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 69/78 (88%), Gaps = 1/78 (1%)

Query: 1    MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
            MNPNETVIVIRSLVPGGVAQ+D +LIPGDRLL VN+  L NA+LDQAVQALKGAP+G V+
Sbjct: 969  MNPNETVIVIRSLVPGGVAQVDGQLIPGDRLLFVNDIALENATLDQAVQALKGAPKGTVR 1028

Query: 61   IGVAKPLPIPDSSCSQVS 78
            IGVAKPLPIPD S  QVS
Sbjct: 1029 IGVAKPLPIPD-SIVQVS 1045

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
FB|FBgn0067864	871	Patj "Patj" [Drosophila melano	0.555	0.091	0.725	1.5e-24
UNIPROTKB|F1N9G0	1999	F1N9G0 "Uncharacterized protei	0.513	0.037	0.653	7.2e-20
UNIPROTKB|F1MMT3	2056	F1MMT3 "Uncharacterized protei	0.479	0.033	0.681	2e-19
UNIPROTKB|O75970	2070	MPDZ "Multiple PDZ domain prot	0.479	0.033	0.652	5.4e-19
UNIPROTKB|F1SMP5	1588	MPDZ "Uncharacterized protein"	0.472	0.042	0.695	8.1e-19
RGD|3105	2054	Mpdz "multiple PDZ domain prot	0.479	0.033	0.652	1.1e-18
MGI|MGI:1343489	2055	Mpdz "multiple PDZ domain prot	0.479	0.033	0.652	1.1e-18
UNIPROTKB|D4A2W4	2068	Mpdz "Multiple PDZ domain prot	0.479	0.033	0.652	1.1e-18
WB|WBGene00003404	2491	mpz-1 [Caenorhabditis elegans	0.520	0.030	0.558	8e-16
UNIPROTKB|G5ECZ8	2491	mpz-1 "Protein MPZ-1, isoform	0.520	0.030	0.558	8e-16

FB|FBgn0067864 Patj "Patj" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 58/80 (72%), Positives = 69/80 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++PN+T+IVIRSLVPGGVAQLD RLIPGDRLL VN  +L NASLDQAVQALKGA +G+V+
Sbjct:   749 LDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQAVQALKGASKGVVR 808

Query:    61 IGVAKPLPIPDSSCSQVSHA 80
             IGVAKPLP+ D+S    S+A
Sbjct:   809 IGVAKPLPMTDNSLKACSNA 828

GO:0005737 "cytoplasm" evidence=NAS;TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IPI

GO:0005635 "nuclear envelope" evidence=NAS

GO:0016324 "apical plasma membrane" evidence=NAS;IDA

GO:0045186 "zonula adherens assembly" evidence=NAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=IMP

GO:0045179 "apical cortex" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS

GO:0035003 "subapical complex" evidence=IDA;TAS

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0005918 "septate junction" evidence=TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0045176 "apical protein localization" evidence=TAS

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0001736 "establishment of planar polarity" evidence=IMP

GO:0034332 "adherens junction organization" evidence=IMP

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

GO:0034334 "adherens junction maintenance" evidence=IGI

GO:0035509 "negative regulation of myosin-light-chain-phosphatase activity" evidence=IGI

GO:0032033 "myosin II light chain binding" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

UNIPROTKB|F1N9G0 F1N9G0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P++T+I+IRSLVPGGVA+ D RL PGDRL+ VN+  L N SL++AVQALKGAP G VK
Sbjct:   728 VDPSKTIILIRSLVPGGVAEQDGRLSPGDRLMFVNDISLENGSLEEAVQALKGAPVGAVK 787

Query:    61 IGVAKPLPI-PDSSC 74
             IGVAKPLP+ P+  C
Sbjct:   788 IGVAKPLPLSPEEGC 802

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

UNIPROTKB|F1MMT3 F1MMT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 47/69 (68%), Positives = 60/69 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P  TVIVIRSLVPGG+A+ D RL+PGDRL+ VN+ +L N+SL++AVQALKGAP G V+
Sbjct:   735 VDPASTVIVIRSLVPGGIAEKDGRLLPGDRLMFVNDVNLENSSLEEAVQALKGAPSGTVR 794

Query:    61 IGVAKPLPI 69
             IGVAKPLP+
Sbjct:   795 IGVAKPLPL 803

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|O75970 MPDZ "Multiple PDZ domain protein" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P  TVI+IRSLVPGG+A+ D RL+PGDRL+ VN+ +L N+SL++AV+ALKGAP G V+
Sbjct:   721 IDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMFVNDVNLENSSLEEAVEALKGAPSGTVR 780

Query:    61 IGVAKPLPI 69
             IGVAKPLP+
Sbjct:   781 IGVAKPLPL 789

GO:0019048 "virus-host interaction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SMP5 MPDZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 8.1e-19, P = 8.1e-19
 Identities = 48/69 (69%), Positives = 60/69 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P  TVIVIRSLVPGGVA+ D RL+PGDRL+ VN+ +L N+SL++AVQALKGAP G V+
Sbjct:   300 VDPASTVIVIRSLVPGGVAEKDGRLLPGDRLMFVNDVNLENSSLEEAVQALKGAP-GTVR 358

Query:    61 IGVAKPLPI 69
             IGVAKPLP+
Sbjct:   359 IGVAKPLPL 367

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

RGD|3105 Mpdz "multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P  TVIVIRSLVPGG+A+ D RL PGDRL+ VN+ +L N++L++AV+ALKGAP G+V+
Sbjct:   713 IDPANTVIVIRSLVPGGIAEKDGRLFPGDRLMFVNDINLENSTLEEAVEALKGAPSGMVR 772

Query:    61 IGVAKPLPI 69
             IGVAKPLP+
Sbjct:   773 IGVAKPLPL 781

GO:0005737 "cytoplasm" evidence=ISO

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0016327 "apicolateral plasma membrane" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0042552 "myelination" evidence=IPI

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:1343489 Mpdz "multiple PDZ domain protein" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P  TVIVIRSLVPGG+A+ D RL PGDRL+ VN+ +L N++L++AV+ALKGAP G+V+
Sbjct:   714 IDPANTVIVIRSLVPGGIAEKDGRLFPGDRLMFVNDINLENSTLEEAVEALKGAPSGMVR 773

Query:    61 IGVAKPLPI 69
             IGVAKPLP+
Sbjct:   774 IGVAKPLPL 782

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0042552 "myelination" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|D4A2W4 Mpdz "Multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/69 (65%), Positives = 60/69 (86%)

Query:     1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++P  TVIVIRSLVPGG+A+ D RL PGDRL+ VN+ +L N++L++AV+ALKGAP G+V+
Sbjct:   713 IDPANTVIVIRSLVPGGIAEKDGRLFPGDRLMFVNDINLENSTLEEAVEALKGAPSGMVR 772

Query:    61 IGVAKPLPI 69
             IGVAKPLP+
Sbjct:   773 IGVAKPLPL 781

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

WB|WBGene00003404 mpz-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 43/77 (55%), Positives = 60/77 (77%)

Query:     4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
             +E+VIV++SLVPGGVAQ D R++PGDRLL VN  DL+N+SL++AV  LK A  G V++G+
Sbjct:   938 DESVIVVQSLVPGGVAQADGRVVPGDRLLFVNNHDLSNSSLERAVAVLKAARMGPVRLGL 997

Query:    64 AKPLPIPDSSCSQVSHA 80
             AKP+P+  S  +  SH+
Sbjct:   998 AKPIPVDQSQFT--SHS 1012

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G5ECZ8 mpz-1 "Protein MPZ-1, isoform d" [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 43/77 (55%), Positives = 60/77 (77%)

Query:     4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
             +E+VIV++SLVPGGVAQ D R++PGDRLL VN  DL+N+SL++AV  LK A  G V++G+
Sbjct:   938 DESVIVVQSLVPGGVAQADGRVVPGDRLLFVNNHDLSNSSLERAVAVLKAARMGPVRLGL 997

Query:    64 AKPLPIPDSSCSQVSHA 80
             AKP+P+  S  +  SH+
Sbjct:   998 AKPIPVDQSQFT--SHS 1012

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VBX6	MPDZ_MOUSE	No assigned EC number	0.6521	0.4722	0.0330	yes	N/A
Q9NB04	PATJ_DROME	No assigned EC number	0.725	0.5486	0.0907	yes	N/A
O55164	MPDZ_RAT	No assigned EC number	0.6521	0.4722	0.0331	yes	N/A
O75970	MPDZ_HUMAN	No assigned EC number	0.6521	0.4722	0.0328	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	8e-11
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-08
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	1e-08
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-07
TIGR00225	334	TIGR00225, prc, C-terminal peptidase (prc)	5e-05
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	1e-04
PRK11186	667	PRK11186, PRK11186, carboxy-terminal protease; Pro	6e-04

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 54.5 bits (132), Expect = 8e-11
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          I +  + PGG A+    L  GDR+L VN   +   + ++AV+ LK +   + 
Sbjct: 28 IFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVT 78

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 1  MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
                 +V+ S+VPG  A   A L  GD +L VN T +   +  +AV  LK A  G V 
Sbjct: 21 GKDEGGGVVVSSVVPGSPAAK-AGLRVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GKVT 78

Query: 61 IGVAKP 66
          + V + 
Sbjct: 79 LTVLRG 84

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           E  +V+ S+ PG  A+  A L  GD +L+VN TD+ N +L+   + LK      V + V
Sbjct: 11 TEGGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 1  MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           +  +  I +  ++PGG A+    L  GDR+LS+N  DL N S D+AV ALKG   G V 
Sbjct: 19 GSDGDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENLSHDEAVLALKG-SGGEVT 76

Query: 61 IGVA 64
          + + 
Sbjct: 77 LTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc)

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           M+  E VIV  S   G  A   A + PGD+++ +N   +   SLD AV  ++G     V 
Sbjct: 59  MDDGEIVIV--SPFEGSPA-EKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVS 115

Query: 61  IGVAKP 66
           + + + 
Sbjct: 116 LEILRA 121

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]. Length = 334

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          +VI S++PG  A   A +  GD +++++   ++  SL+  V+ L+G     V++ + +  
Sbjct: 15 LVITSVLPGSPA-AKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGD 73

Query: 68 PIP 70
            P
Sbjct: 74 GEP 76

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNET-----DLNNASLDQAVQALKGAPRG 57
            VI SLV GG A    +L  GD+++ V +      D+    LD  V  +KG P+G
Sbjct: 257 TVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKG-PKG 310

Length = 667

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.24
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.0
KOG3550|consensus	207		98.99
KOG3571|consensus	626		98.87
KOG3553|consensus	124		98.87
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.85
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.82
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.8
KOG3549|consensus	505		98.78
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.77
KOG3209|consensus	984		98.7
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.65
KOG1892|consensus	1629		98.56
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.53
KOG3209|consensus	984		98.47
KOG3551|consensus	506		98.47
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.46
KOG3580|consensus	1027		98.44
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.42
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.34
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.34
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.33
KOG3606|consensus	358		98.31
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.25
KOG3552|consensus	1298		98.22
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.11
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.09
PRK11186	667	carboxy-terminal protease; Provisional	98.05
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.05
PRK10139	455	serine endoprotease; Provisional	98.01
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.01
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.0
PRK10139	455	serine endoprotease; Provisional	98.0
PRK10898	353	serine endoprotease; Provisional	98.0
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.97
KOG3580|consensus	1027		97.96
PRK10942	473	serine endoprotease; Provisional	97.94
KOG3651|consensus	429		97.93
KOG3605|consensus	829		97.83
PRK10942	473	serine endoprotease; Provisional	97.81
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.63
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.62
KOG0609|consensus	542		97.53
KOG3129|consensus	231		97.36
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.31
KOG3542|consensus	1283		97.25
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.18
KOG3938|consensus	334		97.14
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.0
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.83
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.76
PRK09681	276	putative type II secretion protein GspC; Provision	96.54
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.39
KOG1320|consensus	473		96.2
KOG1421|consensus	955		96.04
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.79
KOG3605|consensus	829		95.78
KOG0606|consensus	1205		95.18
KOG3532|consensus	1051		94.89
KOG1738|consensus	638		94.29
COG3031	275	PulC Type II secretory pathway, component PulC [In	93.97
PF12812	78	PDZ_1: PDZ-like domain	92.06
KOG4407|consensus	1973		88.67
COG0750	375	Predicted membrane-associated Zn-dependent proteas	87.79
KOG3834|consensus	462		84.29

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.24  E-value=5e-11  Score=78.47  Aligned_cols=57  Identities=35%  Similarity=0.498  Sum_probs=53.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      .++||..|.++++|+++| |+.||+|++|||+++.++++.+++.+++.+. ..++|+|.
T Consensus        25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSAS-NPVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHST-SEEEEEEE
T ss_pred             CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCC-CcEEEEEC
Confidence            589999999999999999 9999999999999999999999999999997 58998874

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.00  E-value=3.6e-09  Score=67.23  Aligned_cols=57  Identities=33%  Similarity=0.453  Sum_probs=52.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV   63 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V   63 (144)
                      .+++|..|.++++|+.+| |++||+|++||+.++.++++.++.++++......+.|+|
T Consensus        13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          13 GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            389999999999999988 999999999999999999999999999998656788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3550|consensus

Probab=98.99  E-value=1.1e-09  Score=80.95  Aligned_cols=60  Identities=40%  Similarity=0.559  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..+|||++|+|||.|++-|.|+-||++++|||+++++-.|+.++.+|+... +.|.|+|+-
T Consensus       114 nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~-gsvklvvry  173 (207)
T KOG3550|consen  114 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV-GSVKLVVRY  173 (207)
T ss_pred             CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc-CcEEEEEec
Confidence            568999999999999999999999999999999999999999999999985 799999864

>KOG3571|consensus

Probab=98.87  E-value=5e-09  Score=89.48  Aligned_cols=75  Identities=37%  Similarity=0.497  Sum_probs=65.4

Q ss_pred             CCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC--CCeEEEEEEcCCCCCCCccccc
Q psy3208           3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP--RGIVKIGVAKPLPIPDSSCSQV   77 (144)
Q Consensus         3 ~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~--~~~V~L~V~r~~~~~~~~~~~~   77 (144)
                      .++.||||..|.++|+-+++|||.+||.|++||.+++++++.++||..|+..-  .++++|+|.+.+++....+...
T Consensus       274 rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTi  350 (626)
T KOG3571|consen  274 RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTI  350 (626)
T ss_pred             CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccC
Confidence            46889999999999999999999999999999999999999999999998763  2579999999887665555433

>KOG3553|consensus

Probab=98.87  E-value=3.8e-10  Score=77.93  Aligned_cols=62  Identities=24%  Similarity=0.335  Sum_probs=55.5

Q ss_pred             CCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         3 ~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .++.||||.+|..|+||+.+| |+.+|+|++|||-.+.-++|+.++..|++.+  .+.+.|.|..
T Consensus        56 ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~--vl~mLVaR~~  117 (124)
T KOG3553|consen   56 YTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE--VLRMLVARQS  117 (124)
T ss_pred             cCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH--HHHHHHHhhc
Confidence            368899999999999999999 9999999999999999999999999999853  6777776644

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.85  E-value=1.4e-08  Score=66.85  Aligned_cols=61  Identities=23%  Similarity=0.452  Sum_probs=54.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..+++|..+.++++|+++| |++||+|++||+..+.++++.++..+++......+.|++.|.
T Consensus        12 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          12 DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            4679999999999999998 999999999999999999888888888775556899999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.82  E-value=2.1e-08  Score=66.20  Aligned_cols=60  Identities=28%  Similarity=0.456  Sum_probs=50.2

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.+++||+++| |++||.|++||+.++.++  .+...++.. .++..+.|+|.|...
T Consensus        14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            589999999999999999 999999999999999554  677777744 344699999999764

...

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.80  E-value=5.5e-08  Score=63.27  Aligned_cols=59  Identities=36%  Similarity=0.430  Sum_probs=53.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .+++|..|.++++|+++| |++||+|++||++.+.++++.+....++..+ ..+.|++.|+
T Consensus        26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~-~~~~l~i~r~   84 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GKVTLTVLRG   84 (85)
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeC
Confidence            689999999999999999 9999999999999999999998888888764 5888888774

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3549|consensus

Probab=98.78  E-value=1.4e-08  Score=83.83  Aligned_cols=64  Identities=22%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..+++|++|.+..+|+..|.|-+||-|++|||+.+..++|++++++||+.+ +.|+|+|..-...
T Consensus        79 n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG-deVtlTV~~lr~A  142 (505)
T KOG3549|consen   79 NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG-DEVTLTVKHLRAA  142 (505)
T ss_pred             CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC-CEEEEEeHhhhcC
Confidence            468999999999999999999999999999999999999999999999997 7999999654433

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.77  E-value=6.6e-08  Score=62.89  Aligned_cols=56  Identities=32%  Similarity=0.470  Sum_probs=50.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV   63 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V   63 (144)
                      .+++|..|.++++|++.+ |++||+|++||+.++..+++.++..+++... ..+.|+|
T Consensus        26 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~-~~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG-DEVTLTV   81 (82)
T ss_pred             CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC-CeEEEEE
Confidence            579999999999999988 9999999999999999999999999999875 4677765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3209|consensus

Probab=98.70  E-value=2.7e-08  Score=87.89  Aligned_cols=64  Identities=28%  Similarity=0.447  Sum_probs=58.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~   67 (144)
                      .+++|+|..|++.|+|+.+|||+.||.|+.|+|+++.+.+|.+++.++.... ++.|.|+|+|..
T Consensus       672 p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv  736 (984)
T KOG3209|consen  672 PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKV  736 (984)
T ss_pred             CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeee
Confidence            4679999999999999999999999999999999999999999999997764 358999998844

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.65  E-value=2.5e-07  Score=60.73  Aligned_cols=61  Identities=25%  Similarity=0.375  Sum_probs=51.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++| |+.||+|++||+..+.++  .+...++... ....+.|++.|...
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCE
Confidence            4689999999999999999 999999999999999754  6777888765 24688999988653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1892|consensus

Probab=98.56  E-value=3.5e-07  Score=83.24  Aligned_cols=62  Identities=35%  Similarity=0.483  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..||||++|++|++|+.+|||..||++++|||+++.+++.+.+..++.+.+ ..|.|.|.+..
T Consensus       959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg-~vV~leVaKqg 1020 (1629)
T KOG1892|consen  959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG-NVVHLEVAKQG 1020 (1629)
T ss_pred             ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccC-CeEEEehhhhh
Confidence            579999999999999999999999999999999999999999999999986 68999997743

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.53  E-value=7.9e-07  Score=57.49  Aligned_cols=60  Identities=27%  Similarity=0.398  Sum_probs=50.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...++|..+.++++|++.| |++||.|++|||.++.++  .++..++.......+.+++.|..
T Consensus        11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence            3458999999999999999 999999999999999754  67778887764457889988755

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3209|consensus

Probab=98.47  E-value=3.7e-07  Score=80.87  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +..++||-++...|||.++||+++||+|+.|||.+..+|+|..|+.+||+.+ ..|.|.++|
T Consensus       921 ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg-~~vll~Lr~  981 (984)
T KOG3209|consen  921 YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGG-RRVLLLLRR  981 (984)
T ss_pred             cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCC-eEEEEEecc
Confidence            4678999999999999999999999999999999999999999999999975 344444443

>KOG3551|consensus

Probab=98.47  E-value=1.4e-07  Score=78.75  Aligned_cols=61  Identities=41%  Similarity=0.475  Sum_probs=55.8

Q ss_pred             CCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         3 ~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      ++..+|.|++|.+|-+|++.+.|..||.|++|||..+.+.+|+++++.||+.+ ..|.|.|.
T Consensus       107 eNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraG-keV~levK  167 (506)
T KOG3551|consen  107 ENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAG-KEVLLEVK  167 (506)
T ss_pred             ccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhC-ceeeeeee
Confidence            35789999999999999999999999999999999999999999999999997 56666664

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.46  E-value=1.7e-06  Score=57.08  Aligned_cols=60  Identities=25%  Similarity=0.323  Sum_probs=50.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~   67 (144)
                      ..|++|..|.++++|+++| |++||.|++||+..+.++  .++..++.... ...+.|++.|..
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            3589999999999999999 999999999999999765  55667776652 358899998765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3580|consensus

Probab=98.44  E-value=1.1e-06  Score=77.08  Aligned_cols=64  Identities=34%  Similarity=0.485  Sum_probs=57.3

Q ss_pred             CCCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         2 ~~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+..-|+|+.|.|||||  .|+|+.||+|+.|||+++++..|.-+++.|+.++ ....++|.|+..
T Consensus        36 ~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrksg-K~A~ItvkRprk   99 (1027)
T KOG3580|consen   36 ENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG-KVAAITVKRPRK   99 (1027)
T ss_pred             cCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHhhc-cceeEEecccce
Confidence            345678999999999999  5889999999999999999999999999999996 678899988664

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.42  E-value=2e-06  Score=56.14  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+. + |++||.|++||+..+.+  +++...+++. .....+.|++.|...
T Consensus         7 ~~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           7 YHGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             ecCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            35899999999999986 7 99999999999999975  4677788875 334588999988654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.34  E-value=2.3e-06  Score=70.33  Aligned_cols=62  Identities=27%  Similarity=0.419  Sum_probs=53.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.+++||+++| |+.||+|++|||.++.+++..++..+++......+.|+|.|...
T Consensus        62 ~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  123 (334)
T TIGR00225        62 GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK  123 (334)
T ss_pred             CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence            468999999999999999 99999999999999998877777788876555689999988654

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.34  E-value=2.7e-06  Score=55.23  Aligned_cols=57  Identities=23%  Similarity=0.243  Sum_probs=45.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      +.++.|..|.++++|+.+| |++||+|++||+..+.+  ..+   +++.. ....+.|++.|..
T Consensus        11 ~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~---~l~~~~~~~~v~l~v~r~g   68 (80)
T cd00990          11 EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQD---RLKEYQAGDPVELTVFRDD   68 (80)
T ss_pred             CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHH---HHHhcCCCCEEEEEEEECC
Confidence            4479999999999999999 99999999999999975  233   34432 3358889988765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.33  E-value=2.9e-06  Score=71.28  Aligned_cols=60  Identities=27%  Similarity=0.431  Sum_probs=53.6

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      +++|..|.+++||+++| |+.||+|++|||+++.+++..++..+++......|.|+|.|..
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            79999999999999999 9999999999999999988888888887765568899888754

>KOG3606|consensus

Probab=98.31  E-value=3.4e-06  Score=67.76  Aligned_cols=60  Identities=30%  Similarity=0.398  Sum_probs=53.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      -+||||+++++||.|+..|-|-++|+|++|||+.+.+.+.+++-.++-... ..+-++|.-
T Consensus       193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANs-hNLIiTVkP  252 (358)
T KOG3606|consen  193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANS-HNLIITVKP  252 (358)
T ss_pred             cCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcc-cceEEEecc
Confidence            469999999999999999999999999999999999999999998888774 566666653

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.25  E-value=3.1e-06  Score=71.60  Aligned_cols=60  Identities=23%  Similarity=0.450  Sum_probs=56.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .++.|.++.+++||+++| |++||.|+.|||.++.+++-++++..|+..+...|+|++.|.
T Consensus       112 ~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            578999999999999999 999999999999999999999999999999878999999996

>KOG3552|consensus

Probab=98.22  E-value=1.7e-06  Score=78.56  Aligned_cols=58  Identities=24%  Similarity=0.538  Sum_probs=55.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .+++|..|.+||++  .|+|++||+|++||+.++.+..++.+++++|.+. ..|.|+|+++
T Consensus        75 rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~qP  132 (1298)
T KOG3552|consen   75 RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQP  132 (1298)
T ss_pred             CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEecc
Confidence            68999999999999  6889999999999999999999999999999995 7999999997

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.11  E-value=6.6e-06  Score=70.25  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      +..|..|.++++|+++| |++||+|++||++++.++  ++..+.++..++..+.++|.|....
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~  281 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSP  281 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEE
Confidence            47899999999999999 999999999999999654  7788888776556899999987754

>TIGR00054 RIP metalloprotease RseP

Probab=98.09  E-value=6.3e-06  Score=69.88  Aligned_cols=61  Identities=25%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      .++.|..|.++++|+++| |++||+|++||++++.++  ++....++..+...+.++|.|....
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~  263 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGET  263 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCEE
Confidence            368999999999999999 999999999999999754  7888888876656899999987754

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.05  E-value=1.5e-05  Score=71.20  Aligned_cols=61  Identities=31%  Similarity=0.459  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeC--C---EeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVN--E---TDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VN--g---~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..++|..|.+|+||++++.|++||+|++||  |   +++.++..++++.+|+...+..|.|+|.|.
T Consensus       255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            368999999999999983399999999999  4   355678888999999988767899999874

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.05  E-value=2.3e-05  Score=66.39  Aligned_cols=60  Identities=27%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |++||.|++||++++.++  .+..++++.. ....+.|+|.|...
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            689999999999999999 999999999999999754  7788888864 34689999998753

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=98.01  E-value=2.2e-05  Score=67.36  Aligned_cols=59  Identities=22%  Similarity=0.331  Sum_probs=52.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |++||+|++||++++.++  ++..+++++.+ ..+.|+|.|...
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECCE
Confidence            479999999999999999 999999999999999654  78888888765 688999988763

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.01  E-value=2.4e-05  Score=64.93  Aligned_cols=60  Identities=22%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |++||.|++||++++.++  .+..+.++. .....+.|+|.|...
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 999999999999999764  667777765 334689999998764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.00  E-value=2.6e-05  Score=62.42  Aligned_cols=61  Identities=20%  Similarity=0.134  Sum_probs=52.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      ..|+.|..+.++++|++.| |+.||.|++|||+++.++  +++.+++..... ..+.|+|.|...
T Consensus       190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence            3699999999999999999 999999999999999765  667777777533 589999999764

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10139 serine endoprotease; Provisional

Probab=98.00  E-value=2.8e-05  Score=66.73  Aligned_cols=62  Identities=18%  Similarity=0.243  Sum_probs=52.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.++++|+++| |++||.|++|||+++.++  .+....+.. .....+.|+|.|....
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~  351 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP  351 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4589999999999999999 999999999999999765  777777765 3346899999887643

>PRK10898 serine endoprotease; Provisional

Probab=98.00  E-value=2.3e-05  Score=65.15  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=50.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++| |+.||+|++||++++.++  .+....+.. .....+.|+|.|...
T Consensus       278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3699999999999999999 999999999999999654  555666655 334589999998764

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.97  E-value=3.2e-05  Score=65.46  Aligned_cols=62  Identities=23%  Similarity=0.337  Sum_probs=51.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.+++||+++| |+.||+|++|||..+.++  .+...++... ....+.|+|.|....
T Consensus       256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~  318 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKE  318 (428)
T ss_pred             CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            3689999999999999999 999999999999999765  5566666553 335899999886643

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG3580|consensus

Probab=97.96  E-value=1.2e-05  Score=70.62  Aligned_cols=69  Identities=23%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC   74 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~   74 (144)
                      ...|||+.+...|.|+++|.|+.||.|++|||+..++|+..++..+|.++. +.+.|+|.|....+...+
T Consensus       218 gSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~-GKL~lvVlRD~~qtLiNi  286 (1027)
T KOG3580|consen  218 GSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDSQQTLINI  286 (1027)
T ss_pred             cchhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhcc-CceEEEEEecCCceeeec
Confidence            346899999999999999999999999999999999999999999999985 789999998766544433

>PRK10942 serine endoprotease; Provisional

Probab=97.94  E-value=3.4e-05  Score=66.46  Aligned_cols=59  Identities=19%  Similarity=0.353  Sum_probs=52.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |++||+|++||++++.++  ++..++++..+ ..+.|+|.|...
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~-~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKP-SVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECCE
Confidence            479999999999999999 999999999999999764  88888888865 689999998763

>KOG3651|consensus

Probab=97.93  E-value=3e-05  Score=63.33  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=53.7

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      +||.+|..+.||+++|+++.||.|++|||+++.+.+.-++.++|+... ..|.++.-+.
T Consensus        32 lYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~eV~IhyNKL   89 (429)
T KOG3651|consen   32 LYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-NEVKIHYNKL   89 (429)
T ss_pred             EEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-cceEEEehhc
Confidence            699999999999999999999999999999999999999999999985 6888888653

>KOG3605|consensus

Probab=97.83  E-value=1.5e-05  Score=70.34  Aligned_cols=64  Identities=28%  Similarity=0.468  Sum_probs=56.1

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCC-eEEEEEEcCCCCCC
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKPLPIPD   71 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~-~V~L~V~r~~~~~~   71 (144)
                      ++|.....+|||++.|+|..||+|++|||.++.++...-+..+||+.++. .|+|+|+++.+..+
T Consensus       675 VViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~  739 (829)
T KOG3605|consen  675 VVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTT  739 (829)
T ss_pred             HHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceE
Confidence            35667888999999999999999999999999999999999999999875 68999988766543

>PRK10942 serine endoprotease; Provisional

Probab=97.81  E-value=0.0001  Score=63.58  Aligned_cols=62  Identities=11%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.++++|+++| |+.||+|++|||..+.++  .+....+... ....+.|+|.|....
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~  372 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKP  372 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeE
Confidence            4689999999999999999 999999999999999765  6666676554 335899999887654

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.63  E-value=0.00012  Score=62.60  Aligned_cols=59  Identities=22%  Similarity=0.218  Sum_probs=47.0

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      -+|..|.+++||+++| |++||+|++|||+++.++  ++....+... +...+.++|.|....
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~  187 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSD  187 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCcc
Confidence            3689999999999999 999999999999999876  4554444333 335799999887653

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.62  E-value=0.00018  Score=60.94  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             CChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208          16 GGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC   74 (144)
Q Consensus        16 gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~   74 (144)
                      ++||+.+| |+.||.|++||+.++..+  +++.++++......+.|+|.|........+
T Consensus       123 ~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V  178 (402)
T TIGR02860       123 HSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKIIETVI  178 (402)
T ss_pred             CCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence            58999999 999999999999999655  788889988766789999999775433333

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG0609|consensus

Probab=97.53  E-value=0.00015  Score=62.74  Aligned_cols=58  Identities=24%  Similarity=0.429  Sum_probs=54.5

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      .++|.+|..||.+++.|.|+.||.|++|||+++.+....++..+++... ++++++|.-
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~itfkiiP  204 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GSITFKIIP  204 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-CcEEEEEcc
Confidence            5999999999999999999999999999999999999999999999996 899998853

>KOG3129|consensus

Probab=97.36  E-value=0.00057  Score=53.11  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=51.5

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCC-HHHHHHHHHcCCCCeEEEEEEcCCCCCCCcccccc
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVS   78 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t-~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~~~~~   78 (144)
                      =++|..|.+++||+.+| |+.||.|+++..+.-.+.. ........+......+.++|.|........++|..
T Consensus       140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~  211 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKK  211 (231)
T ss_pred             eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCccc
Confidence            47999999999999999 9999999998776665544 23333344444335899999998865555555443

>TIGR00054 RIP metalloprotease RseP

Probab=97.31  E-value=0.00052  Score=58.30  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=47.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .+.+|..|.+++||+++| |++||.|+++||..+.++  .+..+.+.... +++.+.+.|.
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~-~~v~~~I~r~  184 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIA-GEPMVEILAE  184 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhc-ccceEEEEEe
Confidence            577899999999999999 999999999999999765  66666666665 6777777764

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3542|consensus

Probab=97.25  E-value=0.00033  Score=62.68  Aligned_cols=58  Identities=26%  Similarity=0.394  Sum_probs=52.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      .-||||..|.|++.|++.| |+-||+|++|||++.++.+...+..+|++.  ..+.|+|..
T Consensus       561 GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn--thLtltvKt  618 (1283)
T KOG3542|consen  561 GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN--THLTLTVKT  618 (1283)
T ss_pred             cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC--ceEEEEEec
Confidence            4589999999999999999 999999999999999999999999999986  367777754

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.18  E-value=0.00085  Score=57.30  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             EEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208          10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus        10 Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      |..|.++++|+++| |++||+|++|||+.+.+|  .+....+..   ..+.|+|.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~~---e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCAD---EELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhcC---CcEEEEEE
Confidence            67899999999999 999999999999999765  566555532   46888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3938|consensus

Probab=97.14  E-value=0.00059  Score=54.87  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCC-eEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~-~V~L~V~r~~~   68 (144)
                      +..-.||+.|.+++.-++.-.+++||.|-+|||.++.+|.|.++..+||..+.+ ..+|.+..+..
T Consensus       147 G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~  212 (334)
T KOG3938|consen  147 GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKS  212 (334)
T ss_pred             CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeecccc
Confidence            333469999999999999888999999999999999999999999999999753 66777665543

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.00  E-value=0.0034  Score=45.82  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCC-CCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIP-GDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~-GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..++-|-.|.|++||+.+| |++ .|.|+.+++..+.+.  ++..++++...+.++.|.|-..
T Consensus        42 ~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   42 EEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYNS  101 (138)
T ss_dssp             CCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEET
T ss_pred             cceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEEC
Confidence            5578999999999999999 998 599999999888754  5678888888777999999543

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.83  E-value=0.0058  Score=50.28  Aligned_cols=59  Identities=14%  Similarity=0.252  Sum_probs=49.5

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      .|+|+..+..++++  .|.|+.||.|.+|||.++...  ++...+++..+. +.|++...|...
T Consensus       130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~~  189 (342)
T COG3480         130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHNE  189 (342)
T ss_pred             eeEEEEEccCCcch--hceeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEeccC
Confidence            48999999999999  677999999999999999654  788888887754 589999987443

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.76  E-value=0.01  Score=40.15  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             CCcEEEEEEcCCChh--------hhcC-CcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVA--------QLDA-RLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A--------~~~G-rL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+..|.+|.++-++        .+-| .++.||.|++|||+++...  .....+|.......|.|+|.+..
T Consensus        11 ~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~   80 (88)
T PF14685_consen   11 NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKP   80 (88)
T ss_dssp             TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-ST
T ss_pred             CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCC
Confidence            356889999998443        3333 3679999999999999754  34567888877679999998754

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=96.54  E-value=0.0082  Score=48.60  Aligned_cols=56  Identities=14%  Similarity=0.316  Sum_probs=41.2

Q ss_pred             EEEcCCChh---hhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCCC
Q psy3208          11 RSLVPGGVA---QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLPI   69 (144)
Q Consensus        11 s~V~~gg~A---~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~~   69 (144)
                      =++.||..+   .+.| |+.||.+++|||+++.+.  +++.++++...+ ..++|+|.|.+..
T Consensus       209 Yrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~  268 (276)
T PRK09681        209 YAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGAR  268 (276)
T ss_pred             EEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEE
Confidence            345566544   3578 999999999999999876  555566655543 4799999998753

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.016  Score=47.66  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..|++|..+.+++||+++| ++.||.|+++||.++.+.  .+....+.... ...+.+++.|...
T Consensus       269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence            4579999999999999999 999999999999999765  44555554443 4589999988754

>KOG1320|consensus

Probab=96.20  E-value=0.017  Score=49.91  Aligned_cols=60  Identities=17%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      ++++|+.|++++++...+ +.+||+|++|||+++.+.  .++..+++.+.. +.|.+...|...
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e  458 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAE  458 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCcc
Confidence            479999999999999999 999999999999999988  557888888852 256666666544

>KOG1421|consensus

Probab=96.04  E-value=0.0085  Score=53.84  Aligned_cols=63  Identities=27%  Similarity=0.373  Sum_probs=51.0

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC   74 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~   74 (144)
                      +.|+.|.++|+|++.  |++||.+++||+..+.++  ..+.+++...-.+.+.|+|.|........+
T Consensus       305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqelel~v  367 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQELELTV  367 (955)
T ss_pred             EEEEEeccCCchhhc--cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEEEEEE
Confidence            588999999999876  999999999999988655  667778876655789999999886444333

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.79  E-value=0.013  Score=51.04  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=39.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .....|..|.++|||+.+| |.+||+|++|||.+-.         +-+-..+..+.+++.|...
T Consensus       461 ~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~---------l~~~~~~d~i~v~~~~~~~  514 (558)
T COG3975         461 GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQ---------LDRYKVNDKIQVHVFREGR  514 (558)
T ss_pred             CCeeEEEecCCCChhHhcc-CCCccEEEEEcCcccc---------ccccccccceEEEEccCCc
Confidence            3467999999999999999 9999999999998221         1111223566777665443

>KOG3605|consensus

Probab=95.78  E-value=0.0077  Score=53.70  Aligned_cols=46  Identities=28%  Similarity=0.467  Sum_probs=41.9

Q ss_pred             EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC
Q psy3208           9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP   55 (144)
Q Consensus         9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~   55 (144)
                      +|=++..||.|++.| +|+|.+|++|||+++....|+..+++|...-
T Consensus       759 iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aV  804 (829)
T KOG3605|consen  759 IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAV  804 (829)
T ss_pred             EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhh
Confidence            455678999999999 9999999999999999999999999998774

>KOG0606|consensus

Probab=95.18  E-value=0.038  Score=51.98  Aligned_cols=54  Identities=19%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV   63 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V   63 (144)
                      -.|-+|..+++|..+| |+.+|.|..|||.++.+..|.++++++.+.++ .|.+.+
T Consensus       660 h~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn-~v~~~t  713 (1205)
T KOG0606|consen  660 HSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN-KVTLRT  713 (1205)
T ss_pred             eeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC-eeEEEe
Confidence            4678899999999999 99999999999999999999999999998764 444444

>KOG3532|consensus

Probab=94.89  E-value=0.093  Score=47.47  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +...+-|..|.++.+|+++. +++||.+++||++++..  ..++...++... +.|+..+.|
T Consensus       396 ~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~-~~~~~l~~~  453 (1051)
T KOG3532|consen  396 TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTT-GDLTVLVER  453 (1051)
T ss_pred             CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcc-cceEEEEee
Confidence            35567899999999999999 99999999999999954  477888888875 555555544

>KOG1738|consensus

Probab=94.29  E-value=0.072  Score=47.33  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=50.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +...+|+.+.++++|+....|..||++++||++-+.+|++.-++.-++.... -|.++|.+
T Consensus       224 dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s-gi~l~lkK  283 (638)
T KOG1738|consen  224 DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA-GIELTLKK  283 (638)
T ss_pred             CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc-cceeeeec
Confidence            4456788899999999999999999999999999999999999998888863 45555543

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=93.97  E-value=0.15  Score=40.69  Aligned_cols=60  Identities=15%  Similarity=0.125  Sum_probs=43.2

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLPI   69 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~~   69 (144)
                      |...+-..+++.=+..| |+.||..+++|+..+.+  .+++.++++...+ ..+.|+|.|.+..
T Consensus       208 Gyr~~pgkd~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G~r  268 (275)
T COG3031         208 GYRFEPGKDGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRGKR  268 (275)
T ss_pred             EEEecCCCCcchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecCcc
Confidence            33444444556667788 99999999999999854  3566666666643 3789999998754

>PF12812 PDZ_1: PDZ-like domain

Probab=92.06  E-value=0.52  Score=30.96  Aligned_cols=47  Identities=21%  Similarity=0.203  Sum_probs=38.5

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP   55 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~   55 (144)
                      .+.++.....++++...+ +..+-.|.+||++++.+.  ++.++.+++.+
T Consensus        30 ~~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip   76 (78)
T PF12812_consen   30 VGGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKIP   76 (78)
T ss_pred             CCEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence            346666777888888777 999999999999999766  78888888765

>KOG4407|consensus

Probab=88.67  E-value=0.21  Score=48.15  Aligned_cols=56  Identities=27%  Similarity=0.472  Sum_probs=49.8

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      -|||..|.+.++|..+. |+.||+++.||..++.++...+++.++++.+ ..+.|.|.
T Consensus       144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~~  199 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHVV  199 (1973)
T ss_pred             hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC-CCCCceec
Confidence            37999999999999998 9999999999999999999999999999986 45566663

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=87.79  E-value=2.2  Score=35.10  Aligned_cols=52  Identities=27%  Similarity=0.436  Sum_probs=40.1

Q ss_pred             EEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCe---EEEEEEc
Q psy3208          11 RSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVAK   65 (144)
Q Consensus        11 s~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~---V~L~V~r   65 (144)
                      ..+...++|..++ ++.||+++++|+..+..+  .+....+.......   +.+.+.|
T Consensus       134 ~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         134 GEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence            3688899999999 999999999999999765  55555555443334   6777777

>KOG3834|consensus

Probab=84.29  E-value=2.8  Score=36.09  Aligned_cols=59  Identities=24%  Similarity=0.196  Sum_probs=46.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCC-CCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIP-GDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~-GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      -+|.-|.+|..+++|+++| |.+ -|-|++|||..+. ...+....+++...+ .|+|+|--.
T Consensus        14 teg~hvlkVqedSpa~~ag-lepffdFIvSI~g~rL~-~dnd~Lk~llk~~se-kVkltv~n~   73 (462)
T KOG3834|consen   14 TEGYHVLKVQEDSPAHKAG-LEPFFDFIVSINGIRLN-KDNDTLKALLKANSE-KVKLTVYNS   73 (462)
T ss_pred             ceeEEEEEeecCChHHhcC-cchhhhhhheeCccccc-CchHHHHHHHHhccc-ceEEEEEec
Confidence            5688899999999999999 555 5889999999995 445667777887764 499988543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2d92_A	108	Solution Structure Of The Fifth Pdz Domain Of Inad-		8e-13
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		1e-06
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		4e-06
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-05
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		1e-05
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		1e-05
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		2e-05
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		2e-05
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-05
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		2e-05
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		5e-05
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		6e-05
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		6e-05
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		7e-05
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		8e-05
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		8e-05
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		8e-05
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		9e-05
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		9e-05
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		9e-05
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		1e-04
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		1e-04
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		1e-04
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		1e-04
2vrf_A	95	Crystal Structure Of The Human Beta-2-Syntrophin Pd		1e-04
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		1e-04
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		1e-04
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		1e-04
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		1e-04
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		2e-04
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		2e-04
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		2e-04
3cbx_A	105	The Dvl2 Pdz Domain In Complex With The C1 Inhibito		2e-04
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		2e-04
3cby_A	108	The Dvl2 Pdz Domain In Complex With The N1 Inhibito		2e-04
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		2e-04
1mc7_A	95	Solution Structure Of Mdvl1 Pdz Domain Length = 95		2e-04
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		2e-04
3cbz_A	108	The Dvl2 Pdz Domain In Complex With The N2 Inhibito		2e-04
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		2e-04
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		2e-04
2rey_A	100	Crystal Structure Of The Pdz Domain Of Human Dishev		2e-04
3cc0_A	108	The Dvl2 Pdz Domain In Complex With The N3 Inhibito		3e-04
2kaw_A	90	Nmr Structure Of The Mdvl1 Pdz Domain In Complex Wi		3e-04
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		3e-04
1kef_A	93	Pdz1 Of Sap90 Length = 93		3e-04
1l6o_A	95	Xenopus Dishevelled Pdz Domain Length = 95		4e-04
3fy5_A	91	Dishevelled Pdz Domain Homodimer Length = 91		4e-04
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		5e-04
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		5e-04
2f0a_A	98	Crystal Structure Of Monomeric Uncomplexed Form Of		6e-04

>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like Protein Length = 108

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
           ++P  +VIVIRSLV  GVA+    L+PGDRL+SVNE  L+N SL +AV+ LK  P G+V 
Sbjct: 39  LDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVH 98
Query: 61  IGVA 64
           +G+ 
Sbjct: 99  LGIC 102

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I I  ++ GG AQ D RL  GDRLL+VN T+L +   ++AV +LK     +V + 
Sbjct: 30 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD-MVYLK 88
Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
           I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +  I   KP
Sbjct: 333 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +  I   KP
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +  I   KP
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +  I   KP
Sbjct: 32 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG AQ D RL  GDRLL VN   L   + ++AV  LK     +V + 
Sbjct: 51  PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSE-VVYLK 109
Query: 63  VAKPLPI 69
           V KP  I
Sbjct: 110 VGKPTTI 116

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +  I   KP
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I + S+V GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 30 PGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I +  ++ GG A L   L  GD++LSVN  DL  AS +QA  ALKGA + +  I   +P
Sbjct: 29 IFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQP 87

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  ++PGG A  D RL   D +L VNE D++  S  +AV+ALK A   IV++ V +  
Sbjct: 41  IFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGS-IVRLYVRRRR 99
Query: 68  PI 69
           PI
Sbjct: 100 PI 101

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I +  ++ GG A L   L  GDR+LSVN  +L NA+ +QA  ALK A + +  +   +P
Sbjct: 38 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 96

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          N+T + +  +V GG+A  D RL+ GD++L VN  D+ NA+  +AV AL     G V + V
Sbjct: 27 NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT-QEAVAALLKCSLGTVTLEV 85
Query: 64 AK 65
           +
Sbjct: 86 GR 87

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 29 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYLK 87
Query: 63 VAKP 66
          VAKP
Sbjct: 88 VAKP 91

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
          P++  I I  ++PGG A +D RL   D +L VNE D++     +AV+ALK A
Sbjct: 31 PDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA 82

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I +  ++ GG A L   L  GDR+LSVN  +L NA+ +QA  ALK A + +  +   +P
Sbjct: 41 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 99

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          +V+R++VPGG+A  D RL  GD +L +  T++   + +Q  Q L+
Sbjct: 40 VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 86

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 78

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
          IVI  +   G A  D RL  GD++L VN  DL N+S ++A+ AL+  P+
Sbjct: 45 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQ 93

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 83

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 35 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYLK 93
Query: 63 VAKP 66
          VAKP
Sbjct: 94 VAKP 97

>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain Length = 95

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
          N   I+I  + PG  A     L  GD +LSVN TDL  A+ DQAVQALK A +
Sbjct: 27 NRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGK 79

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 88

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG A  D RL  GD++L+VN   L +   + AV ALK     +V + 
Sbjct: 134 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 192
Query: 63  VAKP 66
           VAKP
Sbjct: 193 VAKP 196

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 38  PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLK 96
Query: 63  VAKP 66
           VAKP
Sbjct: 97  VAKP 100

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 79

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 79

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           +++ I I  ++ GG A  D RL   D +L VNE D+ + +  +AV+ALK A   IV++ V
Sbjct: 39  DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG-SIVRLYV 97
Query: 64  AKPLPIPD 71
            +  P+ +
Sbjct: 98  KRRKPVSE 105

>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory Peptide Length = 105

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 26 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLK 84
Query: 63 VAKP 66
          VAKP
Sbjct: 85 VAKP 88

>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 36 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLK 94
Query: 63 VAKP 66
          VAKP
Sbjct: 95 VAKP 98

>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain Length = 95

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG--APRGIVKIGVAK 65
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+   +  G + + VAK
Sbjct: 28 IYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPISLTVAK 87
Query: 66 PL-PIPDS 72
             P P S
Sbjct: 88 AWDPTPRS 95

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG A  D RL  GD++L+VN   L +   + AV ALK     +V + 
Sbjct: 127 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 185
Query: 63  VAKP 66
           VAKP
Sbjct: 186 VAKP 189

>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I +  ++ GG A  D RL  GD++L+VN   L +   + AV ALK     +V + 
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD-VVYLK 88
Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG A  D RL  GD++L+VN   L +   + AV ALK     +V + 
Sbjct: 124 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 182
Query: 63  VAKP 66
           VAKP
Sbjct: 183 VAKP 186

>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2 (Homologous To Drosophila Dsh) Length = 100

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79

>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79

>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its Inhibitor Length = 90

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 31 IYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 75

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I I  ++PGG A  D RL   D +L VNE D+   +   AV+ALK A   IV++ V +  
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRK 91
Query: 68 P 68
          P
Sbjct: 92 P 92

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I I  ++PGG A  D RL   D +L VNE D+   +   AV+ALK A   IV++ V +  
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRK 91
Query: 68 P 68
          P
Sbjct: 92 P 92

>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain Length = 95

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I I S+  GG    D R+ PGD LL VN+ +  N S D AV+ L+          V KP 
Sbjct: 31 IYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDI--------VHKPG 82
Query: 68 PI 69
          PI
Sbjct: 83 PI 84

>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer Length = 91

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S+  GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 29 IYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
          I I  ++PGG A  D RL   D +L VNE D+   +   AV+ALK A   IV++ V +
Sbjct: 34 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVMR 90

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK
Sbjct: 25 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALK 74

>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus Dishevelled Pdz Domain Length = 98

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
          I I S+  GG    D R+ PGD LL VN+ +  N S D AV+ L+
Sbjct: 31 IYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-19
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	8e-19
2awx_A	105	Synapse associated protein 97; membrane protein, s	2e-18
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-18
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	7e-18
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	9e-18
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	3e-17
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	5e-17
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-16
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	8e-16
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	8e-16
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	9e-16
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-15
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	4e-15
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	4e-15
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	5e-15
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	6e-15
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	7e-15
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	1e-14
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	1e-14
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-14
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	2e-14
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	2e-09
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-14
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	6e-14
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-13
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-13
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-13
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-13
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-13
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-13
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-13
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	3e-13
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-13
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	8e-13
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	4e-13
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-13
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-13
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	6e-13
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	6e-13
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	7e-13
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-12
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-12
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-12
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	1e-12
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	2e-12
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-12
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	6e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-09
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-07
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-12
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	2e-12
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-12
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-12
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-12
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	2e-12
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-12
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	3e-12
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	3e-12
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-12
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-12
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	4e-12
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	4e-12
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	4e-12
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	4e-12
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	5e-12
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	5e-12
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	5e-12
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	5e-12
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	6e-12
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	6e-12
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	6e-12
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-07
2fne_A	117	Multiple PDZ domain protein; structural protein, s	7e-12
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	8e-12
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	9e-12
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	9e-12
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-11
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	1e-11
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-11
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-11
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	2e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-11
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-11
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-11
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-11
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-11
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	3e-11
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-11
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	4e-11
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	5e-11
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	5e-11
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	5e-11
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	5e-11
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-10
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-10
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-10
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	3e-10
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-10
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	4e-10
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	5e-10
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-10
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	5e-10
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-09
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-09
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	2e-09
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-09
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-09
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-09
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-09
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	4e-09
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	4e-09
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	6e-09
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-09
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-08
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-08
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-08
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	2e-08
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	2e-08
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	2e-08
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	2e-08
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-08
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	4e-08
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-08
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	5e-08
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	6e-08
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	7e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	1e-07
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-07
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-07
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-07
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-07
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-07
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-07
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	3e-07
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	4e-07
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	5e-07
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	6e-07
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	7e-07
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	7e-07
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	8e-07
3khf_A	99	Microtubule-associated serine/threonine-protein ki	9e-07
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-06
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	1e-06
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-06
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-06
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-06
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	4e-06
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	4e-06
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	4e-06
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	4e-06
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	6e-06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	8e-06
2ego_A	96	General receptor for phosphoinositides 1- associat	8e-06
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-05
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	1e-05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-05
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	2e-05
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	3e-05
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	9e-05

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 77.4 bits (191), Expect = 1e-19
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +P  +VIVIRSLV  GVA+    L+PGDRL+SVNE  L+N SL +AV+ LK  P G+V +
Sbjct: 40  DPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHL 99

Query: 62  GVAKP 66
           G+   
Sbjct: 100 GICSG 104

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 76.0 bits (187), Expect = 8e-19
 Identities = 13/72 (18%), Positives = 29/72 (40%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
            +  + I  +  G  ++    + PGD +L +  T +   +  +A   +K  P G V I +
Sbjct: 55  GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI 114

Query: 64  AKPLPIPDSSCS 75
            +       + +
Sbjct: 115 RRKSLQSKETTA 126

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 73.9 bits (182), Expect = 2e-18
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG A  D +L  GD+LL+VN   L   + ++AV ALK      V + 
Sbjct: 30  PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLK 88

Query: 63  VAKPLPIPDSSCSQVSH 79
           VAKP  +  S      H
Sbjct: 89  VAKPTSMYISRHHHHHH 105

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 73.6 bits (181), Expect = 3e-18
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          PNE    I  L+ G   ++D++L  GD +   N   L            KGA  G V + 
Sbjct: 22 PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSME 80

Query: 63 VAKPLPIPDSSCSQVSH 79
          V +P P    S S V  
Sbjct: 81 VTRPKPGSGGSGSLVPR 97

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 73.3 bits (180), Expect = 7e-18
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
            +  + I+SLV  G A LD ++  GD ++SVN+T +   +  Q V+  +  P G  V + 
Sbjct: 41  PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 100

Query: 63  VAKPLPIPDSSCS 75
           + +  P+P     
Sbjct: 101 LCRGYPLPFDPDD 113

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 72.8 bits (179), Expect = 9e-18
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P +  I +  ++ GG AQ D RL  GDRLL VN   L   + ++AV  LK     +V + 
Sbjct: 51  PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTS-EVVYLK 109

Query: 63  VAKPLPI 69
           V KP  I
Sbjct: 110 VGKPTTI 116

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 70.4 bits (173), Expect = 3e-17
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
           +  + I+SLV  G A LD ++  GD ++SVN+T +   +  Q V+  +  P G  V + 
Sbjct: 23 PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 82

Query: 63 VAK 65
          + +
Sbjct: 83 LCR 85

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 70.9 bits (174), Expect = 5e-17
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKP 66
           + ++S++P G A  D ++  GD ++ +NE  +   +    V+  +  P G  V + + + 
Sbjct: 46  LQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105

Query: 67  LPIPDSSCSQVSHA 80
            P+P       +  
Sbjct: 106 YPLPFDPEDPANSG 119

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 68.5 bits (168), Expect = 2e-16
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          PNE    I  L+ G   ++D++L  GD +   N   L       +    KGA  G V + 
Sbjct: 28 PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN-GKVSME 86

Query: 63 VAKPLPIPDS 72
          V +P P   S
Sbjct: 87 VTRPKPAAAS 96

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 66.9 bits (164), Expect = 8e-16
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I I  ++ GG AQ D RL  GDRLL+VN T+L +   ++AV +LK     +V + 
Sbjct: 30 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLK 88

Query: 63 VAKP 66
          VAKP
Sbjct: 89 VAKP 92

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 67.8 bits (166), Expect = 8e-16
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I ++++  GG A  D R+   D L+ V+ T L   +   A   L+    G V+  + +  
Sbjct: 37  IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRER 95

Query: 68  PIPDSSCSQVSH 79
           P   S  +Q+  
Sbjct: 96  PGEQSEVAQLIQ 107

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 68.0 bits (166), Expect = 9e-16
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
           N   + I  L+  G A  D  L PGD L+SV   ++   +L + ++ L+    G +++I 
Sbjct: 47  NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106

Query: 63  VAKPL-PIPDSSCSQVSHAG 81
             +    IP         +G
Sbjct: 107 AYRGFLEIPQEWQDSGPSSG 126

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 66.2 bits (162), Expect = 2e-15
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P++  I I  ++PGG A +D RL   D +L VNE D++     +AV+ALK A   +V++ 
Sbjct: 31  PDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG-PVVRLV 89

Query: 63  VAKPLPIPDSS 73
           V +  P P+ +
Sbjct: 90  VRRRQPPPEET 100

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 65.8 bits (161), Expect = 4e-15
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKI 61
                I +++++P G A  D RL  GDRL+ VN  DL   S ++ V  L+     G V +
Sbjct: 36  GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSL 95

Query: 62  GVAKPLPIPDS 72
            V +       
Sbjct: 96  LVFRQEEAFHP 106

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 65.4 bits (160), Expect = 4e-15
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKP 66
           I+I +++  G A  D RL PGD L+ V+   +   +    +  +  A R G V + V + 
Sbjct: 36  ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95

Query: 67  LPIPDSS 73
           +    SS
Sbjct: 96  VLSGPSS 102

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 65.0 bits (159), Expect = 5e-15
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          N+T + +  +V GG+A  D RL+ GD++L VN  D+ NA+ +     LK +  G V + V
Sbjct: 27 NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEV 85

Query: 64 AKP 66
           + 
Sbjct: 86 GRI 88

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.0 bits (159), Expect = 6e-15
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
              +T + +R L+  G AQ   RL  GD +L +N       +  QAV+ ++      + +
Sbjct: 34  VAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG-PQLHL 92

Query: 62  GVAKPLPIPDS 72
            + +PL  P S
Sbjct: 93  VIRRPLSGPSS 103

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 65.1 bits (159), Expect = 7e-15
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
              T I ++SL+PG  A LD R+ P D++L V++ ++   +    V+ L+ A    V++ 
Sbjct: 41  GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAG-NPVRLL 99

Query: 63  VAKPLPIPD 71
           + + LP+ +
Sbjct: 100 LIRRLPLLE 108

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I ++S+V GG A +D RL  GD+LLSV+   L   S ++A + +      +V + VAK  
Sbjct: 40  IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQG 98

Query: 68  PI 69
            I
Sbjct: 99  AI 100

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKP 66
           I +++++P G A  D RL  GDRL+ VN  DL   S ++ V  L+     G V + V + 
Sbjct: 60  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 64.0 bits (156), Expect = 2e-14
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA--PRGIV 59
              +  I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+      G +
Sbjct: 29  ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88

Query: 60  KIGVAKPLPIPDSSCSQVSHAGP 82
            + VAK       S ++V   GP
Sbjct: 89  VLTVAKS---GGGSGNEVWIDGP 108

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           PNE    I  L+ G   ++D++L  GD +   N   L            KGA  G V + 
Sbjct: 133 PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSME 191

Query: 63  VAKPLPIPDSS 73
           V +P P   + 
Sbjct: 192 VTRPKPTLRTE 202

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASL--DQAVQALKGAPRGIV 59
           N   T  VI  + P G    D RL   D +  +N T ++  S+   +  Q         V
Sbjct: 41  NHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAV 100

Query: 60  KIGVAKPLPIPDSSCSQVSH--AGPGLGANGLGAAPGL 95
            + V +  P      +      AG  LG +      G 
Sbjct: 101 TLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGC 138

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKP 66
          I I  +VP G A  D RL  GD L+SV+ T +   S    VQ ++ A  +G V + V + 
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 62.8 bits (153), Expect = 6e-14
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
             + +V+R++VPGG+A  D RL  GD +L +  T++   + +Q  Q L+      V++ V
Sbjct: 36  KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLV 94

Query: 64  AKPLPIPDSSCSQVS 78
           A+      S  S  S
Sbjct: 95  ARDPAGDISVTSGPS 109

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          +E  + I  L+ GG+A  D RL   DR+L++N  DL   + + A Q ++ A    V + +
Sbjct: 27 DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTI 85

Query: 64 AKP 66
          A+P
Sbjct: 86 ARP 88

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
          N   T I I+ +VP   A L  RL  GDR+LS+N  D+ N++    +  +K A    +++
Sbjct: 33 NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEAD-FKIEL 91

Query: 62 GVAKP 66
           +   
Sbjct: 92 EIQTF 96

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  + P GVA    +L  GDR++++  T     +  QAV  LK A  G +++ V    
Sbjct: 55  IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAGG 113

Query: 68  PIPDSS 73
            + ++S
Sbjct: 114 DVSETS 119

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I ++ +   G+A  D  L  GD +L +N T   N SL  A + ++ + RG +++ V + L
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRDL 81

Query: 68 P 68
           
Sbjct: 82 E 82

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
             +  I +  +  GG A     L  GDR+LS+N  D+  A  D AV  L  A    + + 
Sbjct: 35  AGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALL 93

Query: 63  VAKPLPIPDSS 73
           + +      SS
Sbjct: 94  LEREAGSGPSS 104

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          +VI S+ PGG A  +  + PGDRLLSV+   L   +  +A+  LK        + +   +
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEYDV 92

Query: 68 P 68
           
Sbjct: 93 S 93

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 60.8 bits (148), Expect = 3e-13
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I+I  +   G A  D RL  GD++L VN  DL  A+ D+A+  L+  P   V++ + +  
Sbjct: 32 IIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRDE 90

Query: 68 PIPDSS 73
              S+
Sbjct: 91 APYKST 96

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 60.9 bits (148), Expect = 3e-13
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +  +   G A LD RL  GD++LSVN  DL N     AV   + A    V + V   L
Sbjct: 49  IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRL 107

Query: 68  PIPDSSCSQVS 78
            + +   S  S
Sbjct: 108 QVQNGPISGPS 118

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
            ++  I I  ++PGG A  D RL   D +L VNE D+   +   AV+ALK A   IV++ 
Sbjct: 32  GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLY 90

Query: 63  VAKPLPIPDSSCSQVSHAGP-GLG---ANGLGAAPGLGSNGL 100
           V +  P  +         GP GLG   A G+G     G N +
Sbjct: 91  VMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI 132

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             P +  I +  ++ GG A  D RL  GD++L+VN   L +   + AV ALK     +V 
Sbjct: 125 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVY 183

Query: 61  IGVAKP 66
           + VAKP
Sbjct: 184 LKVAKP 189

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 60.4 bits (147), Expect = 4e-13
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I ++++  GG AQ D R+   D+++ V+   L   + + A   L+    G V+  + +  
Sbjct: 42  IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGREK 100

Query: 68  PIPDSS 73
           P   SS
Sbjct: 101 PSGPSS 106

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 59.9 bits (146), Expect = 5e-13
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+     +V + + K  
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ 93

Query: 68 P 68
           
Sbjct: 94 S 94

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 60.0 bits (146), Expect = 5e-13
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I ++S+      + D R+  GD++++V+ T+L   +  QAV+ L+      V + + +  
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG-QTVLLTLMRRG 93

Query: 68 P 68
           
Sbjct: 94 E 94

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 60.0 bits (146), Expect = 6e-13
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I +  +   G A LD RL  GD++LSVN  DL N     AV   + A    V + V   L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRL 97

Query: 68 P 68
           
Sbjct: 98 E 98

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 59.6 bits (145), Expect = 6e-13
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I+I SL  GG+A+    +  GDR+L++N + L    L +A+  L+ A    V + + K  
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQT 90

Query: 68 PIPDSS 73
              +S
Sbjct: 91 DAQPAS 96

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 59.8 bits (145), Expect = 7e-13
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          ++  ++I  L+ GG A+    +  GD +L+VN+  L + S D A++ L+G      
Sbjct: 24 SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH 79

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           +VI  + PGG A  +  + PGDRLLSV+   L   +  +A+  LK        + +   +
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEATLLIEYDV 195

Query: 68  PIPDS 72
            + DS
Sbjct: 196 SVMDS 200

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
            +    + +L  GG+A    +L  GD + +VN  +L     D+ +  LK      V + V
Sbjct: 31  KDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNV-GERVVLEV 89

Query: 64  AKPLPIPDSSCSQVSHAGPGL----GANGLG 90
              LP      S V      +      N  G
Sbjct: 90  EYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I+ ++    A  +  L PGDR++ V+  DL +AS +QAV+A++ A    V   V   +
Sbjct: 41  IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSII 99

Query: 68  PIP 70
              
Sbjct: 100 STR 102

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG---IVKIGVA 64
           +V+ ++  GG A+    ++ GD ++++N   + + +L +A  AL+ A       + + VA
Sbjct: 45  VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104

Query: 65  KPLP 68
              P
Sbjct: 105 VCPP 108

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
              ET IVI  ++ GG A  + +L   DR+  VN   ++N     AVQ L+ +     KI
Sbjct: 35  QSGETSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSG-KNAKI 91

Query: 62  GVAKPLPIPDSSCSQV 77
            + +         + +
Sbjct: 92  TIRRKKGGGWRRTTYL 107

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
                 +VI  +  G VA     L  GD+LL+++   L++ S++ AVQ L+     +VK+
Sbjct: 131 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKL 189

Query: 62  GVAKP 66
            + K 
Sbjct: 190 KIRKD 194

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
            +I  +     A+    L  GDR++++N     +++ ++A Q L+ +     K+ +    
Sbjct: 38  PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-ITSKVTLEIEF 96

Query: 68  PIPDSSCSQ--------VSHAGPGLGANGLGAAPGLGSNGL 100
            + +S                   LG      +     + L
Sbjct: 97  DVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPL 137

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 62.6 bits (151), Expect = 2e-12
 Identities = 25/87 (28%), Positives = 39/87 (44%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
              ++  I I  ++PGG A  D RL   D +L VNE D+   +   AV+ALK A   +  
Sbjct: 84  HIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL 143

Query: 61  IGVAKPLPIPDSSCSQVSHAGPGLGAN 87
             + +  P       ++     GLG +
Sbjct: 144 YVMRRKPPAEKVMEIKLIKGPKGLGFS 170

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 30/91 (32%), Positives = 40/91 (43%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +  I   KP 
Sbjct: 333 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392

Query: 68  PIPDSSCSQVSHAGPGLGANGLGAAPGLGSN 98
                           + ++       L SN
Sbjct: 393 EYSRFEAKIHDLREQLMNSSLGSGTASLRSN 423

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
             P +  I +  ++ GG A  D RL  GD++L+VN   L +   + AV ALK     +
Sbjct: 179 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 236

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+     +V + + K  
Sbjct: 44  IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ 102

Query: 68  P 68
            
Sbjct: 103 S 103

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  + P G A  D RL  G RLL VN+  L   +  +AVQ L+      + + V    
Sbjct: 46  IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDGF 104

Query: 68  PIPDSS 73
               SS
Sbjct: 105 ESGPSS 110

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 58.6 bits (142), Expect = 2e-12
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +  +V  G A  +  L   DR++ VN  DL+ A+ DQAV+A K A +  + + V +  
Sbjct: 43  IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRRT 101

Query: 68  PIPDS 72
             P S
Sbjct: 102 SGPSS 106

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLN-NASLDQAVQALKGAPRGIVKIGVAKP 66
           I ++ + PG VA  D RL   D++L++N T L+ N S  QA+  L+    G +++ VA+ 
Sbjct: 56  IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT-GSLRLIVARE 114

Query: 67  LPIPDSSCSQVS 78
                SS S  S
Sbjct: 115 PVHTKSSTSGPS 126

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           IVI  +   G A  D RL  GD++L VN  DL N+S ++A+ AL+  P   V++ V +  
Sbjct: 45  IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDE 103

Query: 68  PIPDSSCSQVS 78
                  S  S
Sbjct: 104 AHYRDEESGPS 114

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 59.0 bits (143), Expect = 2e-12
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +  + P G A  D R+  GD LL +N   L   S   A   +K AP   VK+   +  
Sbjct: 53  IFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRNE 111

Query: 68  PIPDSSCSQVS 78
              +   S  S
Sbjct: 112 DAVNQMASGPS 122

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + I++L+PG  A  D RL  GDR+L VN + L      +AV  ++      ++  VAK  
Sbjct: 38  LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSD 96

Query: 68  PIPDSSCSQVSHAG 81
                       +G
Sbjct: 97  VETAKKIHSGPSSG 110

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 58.0 bits (141), Expect = 3e-12
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
          I I  ++PGGVA     L  GD+LLSVN   +     ++AV+ LK A +G VK+ V  
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRS 88

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA---PRGI 58
                ++ I  ++PGG    D RL PGD+L+S+N+  +   S ++A   +  A       
Sbjct: 37  RNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESP 96

Query: 59  VKIGVAKPLP 68
            +I   +  P
Sbjct: 97  WEIAFIRSGP 106

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 57.3 bits (139), Expect = 3e-12
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I ++ +    +A  D  +  GD +L +N T   N SL  A   ++ + +G +K+ V + 
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRD 80

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 58.2 bits (141), Expect = 4e-12
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +  E    I  ++PGG A+   +L+ G ++L  N   L + + ++    +     G  +I
Sbjct: 45  HSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQ-SGEAEI 103

Query: 62  GVAKPLPIPDSS 73
            V   L +   S
Sbjct: 104 CVRLDLNMSGPS 115

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 58.1 bits (141), Expect = 4e-12
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
           + +  L   G A+   ++  GD +L +N     N    +A++ +K      V++ + + 
Sbjct: 51  LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRG 108

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + +  L   G A  + R+  GD+++ +N     + +  +A++ +K      V++ + +  
Sbjct: 38  LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGT 96

Query: 68  PIPDSS 73
               SS
Sbjct: 97  GSGPSS 102

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + +
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV 87

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 57.4 bits (139), Expect = 4e-12
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I ++ +    +A  D  +  GD +L +N T   N SL  A   ++ + +G +K+ V + 
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRD 82

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 58.3 bits (141), Expect = 5e-12
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          ++  ++I  L+ GG A+    +  GD +L+VN+  L + S D A++ L+G       + +
Sbjct: 31 SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90

Query: 64 AKPLP 68
           +   
Sbjct: 91 LRGPE 95

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 57.8 bits (140), Expect = 5e-12
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + I  +     A LD  +  GD +  VN   +   +  +  + ++   +G V I   K  
Sbjct: 52  LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKLQ 110

Query: 68  P 68
            
Sbjct: 111 Y 111

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 58.3 bits (141), Expect = 5e-12
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKP 66
             I  +  G +A     L PGD +L  N   L  A+ ++    +  + P   V++ V++ 
Sbjct: 67  AFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126

Query: 67  LPIP 70
            P  
Sbjct: 127 GPSS 130

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 57.8 bits (140), Expect = 5e-12
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I + S+ PGGV   D R+  GD LL+V+  +L   S  +AV  LK      + +   +  
Sbjct: 55  IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SSSIVLKALEVK 113

Query: 68  P 68
            
Sbjct: 114 E 114

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 57.8 bits (140), Expect = 6e-12
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVA 64
           I +  + P G+A  +  +  G+ +LS+N   L   +   A+  L+ A       +     
Sbjct: 44  ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103

Query: 65  KPLPIPDSSCSQVS 78
            P  +PD + S  S
Sbjct: 104 TPEAMPDLNSSGPS 117

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 57.8 bits (140), Expect = 6e-12
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + I  +     A LD  +  GD +  VN   +   +  +  + ++   +G V I   K  
Sbjct: 47  LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKLQ 105

Query: 68  PIPDSSCSQVSHAGP 82
             P       +  G 
Sbjct: 106 ADPKQLEVLFNGPGI 120

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 60.8 bits (146), Expect = 6e-12
 Identities = 16/84 (19%), Positives = 30/84 (35%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
                 +++ +++ GG A    +L  GD+++S+N T L    L      +KG        
Sbjct: 228 GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVK 287

Query: 62  GVAKPLPIPDSSCSQVSHAGPGLG 85
                 P   +   +       LG
Sbjct: 288 LNIVSCPPVTTVLIKRPDLKYQLG 311

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
            +I SL+ GG+A+    +  G R++ +N   +   + ++ VQAL  +   I
Sbjct: 317 GIICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEI 366

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.7 bits (140), Expect = 7e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
           I ++++   G A  D RL  GD++++VN   L   + ++AV  LK   +G V + V   
Sbjct: 55  IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVLSS 112

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 56.6 bits (137), Expect = 8e-12
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P++  I +  + P G A     L PGD+++  N     N    QAV  LK      V++ 
Sbjct: 32 PDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELI 88

Query: 63 VAKPLP 68
          + + + 
Sbjct: 89 IVREVS 94

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 57.4 bits (139), Expect = 9e-12
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDL-NNASLDQAVQALKGAPRGIVKIGVAKP 66
           I ++ +  G VA  D RL   D++L++N   L    +  QA+  L+ A +  V++ +A+ 
Sbjct: 51  IFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA-KDTVQLVIARG 109

Query: 67  LPIPDSS 73
             +P   
Sbjct: 110 -SLPQYY 115

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 57.4 bits (139), Expect = 9e-12
 Identities = 12/76 (15%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
                + I ++S++PG  A  +  +   D++++V+  ++   +    V+ L+ A   +V 
Sbjct: 41  HTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA-GQVVH 99

Query: 61  IGVAKPLPIPDSSCSQ 76
           + + +      +S  +
Sbjct: 100 LTLVRRKTSSSTSPLE 115

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I+ ++    A  +  L PGDR++ V+  DL +AS +QAV+A++ A    V   V   +
Sbjct: 61  IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSII 119

Query: 68  P 68
            
Sbjct: 120 S 120

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          I+I  +  G  A     L  GD +LSVN  DL++A+ D+AVQALK   + +V
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
             I  ++ G  A   A+L  GDR+L+VN   + N      V+ +K A    V + +    
Sbjct: 45  HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQE 103

Query: 68  PIPDSSCS 75
            +   S  
Sbjct: 104 ELNSPSGP 111

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
           I I  LVPGG+AQ    L   D +L VN  +++  SLDQ    +    R ++
Sbjct: 67  IFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLI 118

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           N++VI I  + P  V      L PGD +LS++ T + + SL +A + L       V++ +
Sbjct: 40  NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-SEKVRLEI 98

Query: 64  AKPLPIPDSSCSQVSHAGPGLG 85
              LP+P S       +GP  G
Sbjct: 99  ---LPVPQSQRPLRPSSGPSSG 117

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA----PRG 57
           N  + +  I ++  GG A    +L  G  +L VN   L      +A + +  A     R 
Sbjct: 28  NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87

Query: 58  IVKIGVAKPLPIPDS 72
            +   V +    P S
Sbjct: 88  YIDFLVTEFNSGPSS 102

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           I+I  + PG  A     L  GD +L+VN  +L +    +AV  L    RG ++  V
Sbjct: 55  ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEV 109

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          I+I  + PG  A     L  GD +L+VN  +L +    +AV  L    RG ++  V
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEV 91

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P++  I +  + P G A     L PGD+++  N     N    QAV  LK      V++ 
Sbjct: 40  PDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELI 96

Query: 63  VAKPLP 68
           + + + 
Sbjct: 97  IVREVS 102

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI-VKIGVAKP 66
            VI +L+ GG A+    L  GDRL ++N T L    L     A++       V + +   
Sbjct: 39  AVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98

Query: 67  LPI 69
            P+
Sbjct: 99  PPV 101

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
           I ++++  GG A  D R+   D L+ V+ T L   +   A   L+    G V+  + +
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGR 169

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 55.0 bits (133), Expect = 4e-11
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +  + PG +A+ +  L  GD++L VN+  L   +  +AV+ALKG+ + ++ +  A  +
Sbjct: 37  IYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95

Query: 68  PIPDS 72
             P S
Sbjct: 96  SGPSS 100

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVA 64
           I I+ ++    A     L  GD++L V+  DL NAS  +AV+A+K A   +   V+   +
Sbjct: 52  IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111

Query: 65  KPLPIP 70
            P  IP
Sbjct: 112 TPRVIP 117

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 55.5 bits (134), Expect = 5e-11
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
              ET IVI  ++PGG A  D  L   DR++ VN T + +     AVQ L+ + + I  I
Sbjct: 42  ENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK-IAAI 98

Query: 62  GVAKPLPIPDSSCS 75
            V +P  +  +  S
Sbjct: 99  VVKRPRKVQVAPLS 112

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 55.5 bits (134), Expect = 5e-11
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + + 
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 91

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 54.7 bits (132), Expect = 5e-11
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          + + ++  GG A    +L PGD++L +N     + S ++AV  L+ A    + I V +  
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAE-DSLSITVVRCT 89

Query: 68 PIPDSS 73
              SS
Sbjct: 90 SSGPSS 95

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 55.6 bits (134), Expect = 5e-11
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA------PRGIVKI 61
           I I+S++ GG A  D RL   D+L++VN   L   S  +A++ L+ +       RG++++
Sbjct: 57  IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116

Query: 62  GVAK 65
            + +
Sbjct: 117 VILR 120

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + +  L P   A + A    GD ++S+   D    +L + ++ LK      +++ V   L
Sbjct: 46  VQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104

Query: 68  PIP 70
              
Sbjct: 105 DEV 107

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          I +  ++ GG A L   L  GDR+LSVN  +L NA+ +QA  ALK A + + 
Sbjct: 41 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVT 92

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           + ++  I I  + P  +A  D R+  GDR++ +N  ++ N    +AV  L         +
Sbjct: 44  DEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLTSEENKNFSL 101

Query: 62  GVAKPLPIPD 71
            +A+P    D
Sbjct: 102 LIARPELQLD 111

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 52.3 bits (126), Expect = 3e-10
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
           ++  ++ GG+      L  GD +  +N   + N +++Q  + L+     I 
Sbjct: 27 CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT 78

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 53.2 bits (128), Expect = 3e-10
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           ++I  +V GG A+    L  GD +L +N  ++    +++    L     G +   +  P 
Sbjct: 50  VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVL-IPS 107

Query: 68  PIPDS 72
             P S
Sbjct: 108 SGPSS 112

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 5  ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          +  I ++ +     A L   L  GD++L +N  +    S D+A + LK A    + + +
Sbjct: 26 DNGIFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +  +  GG A++   L  GD+++ VN  D+   + DQA + L      +V++ V +  
Sbjct: 66  IYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQS 124

Query: 68  PIPDSSCSQVS 78
                  S +S
Sbjct: 125 LQKAVQQSMLS 135

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I I  +   G A     +  GD+LL VN   L  A   +AV+AL+GA    V++ V +  
Sbjct: 36 IFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRER 93

Query: 68 PIP 70
             
Sbjct: 94 ETS 96

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
            +I  +     A+    L  GDR++++N     +++ ++A Q L+ +     K+ +    
Sbjct: 47  PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI-TSKVTLEIEF 105

Query: 68  PIPDSSCSQVSHAGPGLG 85
            + +S     S +GP  G
Sbjct: 106 DVAESV-IPSSGSGPSSG 122

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + I  L+ GG A     L  GD ++ +N   +++ + ++ +  ++      +K+     +
Sbjct: 112 LFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGLI 170

Query: 68  PIPDSSCSQVS 78
           P+  S    ++
Sbjct: 171 PVKSSPDEPLT 181

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
           N+  I +  ++    A  +  L  GD++L VN  D  N   ++AV  L   P+G
Sbjct: 49  NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG 101

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
          I++  ++ GG A     +  GD L  VN   + +   ++ +Q L  + +G +   + 
Sbjct: 30 IIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQS-QGAITFKII 85

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI-VKIGVAKP 66
            I+ +  GGV      +  GD + S+N  ++         + LK   +     + + +P
Sbjct: 30 AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89

Query: 67 L 67
           
Sbjct: 90 K 90

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           +    IR + PG  A+  A L+ GDRL+ VN  ++   +  Q V  ++ A    V++ V
Sbjct: 25 GKLGQYIRLVEPGSPAE-KAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAVRLLV 82

Query: 64 AKP 66
            P
Sbjct: 83 VDP 85

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
           E  + ++++ P G   L   L P DRLL VN     +      V  +  + 
Sbjct: 30 LEKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG 80

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 50.0 bits (120), Expect = 3e-09
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVK 60
          +P      ++ +V    +     L  GD ++ VN+ ++   + +Q V  L  +P+G  V 
Sbjct: 23 SPGGGGQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79

Query: 61 IGVAKPLPI 69
          + V +   +
Sbjct: 80 LLVQRQTRL 88

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 24/68 (35%), Positives = 33/68 (48%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I+I  +  G  A     L  GD +LSVN  DL++A+ D+AVQALK   + +V        
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE 164

Query: 68  PIPDSSCS 75
             P    S
Sbjct: 165 VSPYFKNS 172

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
          I + S+  G  A+  ++L   D ++++N T  +     +  +A+  A   
Sbjct: 30 IFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQET 78

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
            +  ++ GG+      L  GD +L +N T++ N S+DQ  +A+K   +G++ + V 
Sbjct: 38 CTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVI 93

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  + PG  A+  + L  GD++L VN     N   D+AV+ LK +   I+ +     L
Sbjct: 48  IYITGVDPGSEAE-GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106

Query: 68  PIPDSSCSQVSH 79
           P   ++  +   
Sbjct: 107 PHARTTVDETKW 118

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I I  +   G A     +  GD+LL VN   L  A   +AV+AL+GA    V++ V +  
Sbjct: 48  IFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRES 105

Query: 68  PIP 70
              
Sbjct: 106 GPS 108

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I +  +  G  A+    L  GD++  VN   L + ++  AV+ L  + R  + + V +  
Sbjct: 38 IFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVLTSSSR--LHMMVRRMG 94

Query: 68 PIPDS 72
            P S
Sbjct: 95 SGPSS 99

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
          I I  ++P   A     L  GD++L+VN+ D  +    +AV+ LK A    +++
Sbjct: 43 IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRV 95

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 8  IVIRSLVPGGVA-QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
          +++  + PG  A     RL  GD+++ +N  D+   + DQ V  +K +  
Sbjct: 45 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 94

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           + +  L P   A L A    GD ++S+   D    ++ + ++ LK      V++ V   L
Sbjct: 38  VQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96

Query: 68  PIPDSSCSQVSHAG 81
               S  ++   + 
Sbjct: 97  DSTSSMHNKSGPSS 110

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVA 64
          + ++++  GG A+  A L   D +L +NE  + +    +    ++  P  I   V   V 
Sbjct: 26 VRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVP 84

Query: 65 KPLPIPD 71
          +  P PD
Sbjct: 85 QVKPGPD 91

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
          I I  + PG ++  +  L  GD+++ VN  D +N    +AV  LK +    + I
Sbjct: 43 IFISHVKPGSLSA-EVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 95

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
            I+ +  GG A L A L   D ++ VN  ++ +   ++ V  ++ +    V + V   
Sbjct: 29 SFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG-KNVTLLVCGK 85

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           V+  ++ G  A     L  GD++L+VNE ++  AS +  V+ +     G++ + +A+ +
Sbjct: 25 CVLSCVMRGSPADF-VGLRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAEGV 82

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I +  +  G +A     L  GD+LL  N  +L +A+  QA   +       + I +A+  
Sbjct: 44  IYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQ-CDTITI-LAQYN 100

Query: 68  PIPDSSCSQVSHAGPGLG 85
           P      S  S +GP  G
Sbjct: 101 PHVHQLSSH-SRSGPSSG 117

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 19  AQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKPLPIPDSSCSQV 77
           +Q    L  GD +  +   ++ N +  Q V+ LK  P G  V + + +  P   +  +++
Sbjct: 44  SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103

Query: 78  SHAGPGL 84
                 +
Sbjct: 104 GSGSGQI 110

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 46.5 bits (111), Expect = 7e-08
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
            IRS+ PG  A   + L   DRL+ VN  ++      + V ++K       ++ V  P
Sbjct: 30 QYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE-DEARLLVVGP 86

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          + +  +  GG A L  ++  GD L+++N T L   S  +A+  +KG+ R I+K+ V +  
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIKGSFR-ILKLIVRRRN 94

Query: 68 PIPDS 72
            P S
Sbjct: 95 SGPSS 99

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          N+  I +  ++    A  +  L  GD++L VN  D  N   ++AV  L   P+G  
Sbjct: 29 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE 83

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
          + I SL  GG A   A +  GD +LS++  +    +  +A   +KG   
Sbjct: 29 LTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTG 76

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
            +  + PG  A+  A +  GDRL++V    +     ++ V  ++G     V + V  P
Sbjct: 32 QFLWEVDPGLPAKK-AGMQAGDRLVAVAGESVEGLGHEETVSRIQGQG-SCVSLTVVDP 88

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          I++  +   G A+ DA L PGD ++++N          +A   ++ +P   +++ + + 
Sbjct: 28 IMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRI 84

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 8  IVIRSLVPGGVA-QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
          +++  + PG  A     RL  GD+++ +N  D+   + DQ V  +K +  
Sbjct: 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 92

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
            IRS+ P   A+  + L   DR++ VN   +        V A++       K+ V    
Sbjct: 35 QFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRE 92

Query: 68 P 68
           
Sbjct: 93 T 93

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 44.5 bits (106), Expect = 3e-07
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          + I  + PG  A   ++L  GD +++++  + +  +  +A   +K A   + 
Sbjct: 27 LTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS 77

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          N+  I +  ++    A  +  L  GD++L VN  D  N   ++AV  L   P+G     +
Sbjct: 21 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 79

Query: 64 AKPLPIP 70
          A+     
Sbjct: 80 AQKKKDV 86

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 44.2 bits (105), Expect = 5e-07
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 5  ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
          + +++++S+ PGG A   A +  GDR++ VN T + N+S  + V+ +K      V + + 
Sbjct: 28 DRIVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAY--VALTLL 84

Query: 65 KPLPIPDS 72
               P S
Sbjct: 85 GSSSGPSS 92

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           I ++ +  GG A   A L  GDR++ VN   +   +  Q +  ++ +    +++ V    
Sbjct: 63  IFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQNSD-TTLELSVMPKD 120

Query: 68  PIPDS 72
             P S
Sbjct: 121 SGPSS 125

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          + +  + P GVA   A ++  D L+ VN  ++ +AS ++ V+ +K +    V   +   
Sbjct: 34 VYMTDITPQGVAMR-AGVLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRVMFLLVDK 90

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 43.8 bits (104), Expect = 7e-07
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +   +I+ + PG  A+  A L   D +++VN   +     D  V+ ++        + 
Sbjct: 26 PEQKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLL 83

Query: 63 VAKP 66
          V   
Sbjct: 84 VLDK 87

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          + I  + PG  A L A L  GD + +++  + +N +  +A   +KG     + + VA+ 
Sbjct: 29 LAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVARS 85

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
               V+ S+  G  AQ +A L  GD +  +N   +        V+ L  + 
Sbjct: 32 YTVHHVVWSVEDGSPAQ-EAGLRAGDLITHINGESVLGLVHMDVVELLLKSG 82

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          + I SL  GG A   A +  GD +LS++       +  +A   +K    G + + + +  
Sbjct: 31 LTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQRAS 88

Query: 68 PIPDSSCSQ 76
              S    
Sbjct: 89 AAAKSEPVS 97

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          + I  L PGG A   A +  GD +LS++  +  + +  +A   ++     + 
Sbjct: 29 LSISRLTPGGKAAQ-AGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLS 79

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 5  ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
          ++ + ++++  GG A+  A L   D +L +NE  + +    +    ++  P  I+ +   
Sbjct: 35 DSPVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 93

Query: 65 KPLP 68
             P
Sbjct: 94 VSGP 97

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
            IRS+ P   A+  + L   DR++ VN   +        V A++       K+ V   
Sbjct: 35 QFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          I++  +   G A+  A L PGD ++++N     N    +A   ++ +   + 
Sbjct: 32 IIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR 82

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
           +VI  + PG  A   A L PGD +L+++     + +   A   +K A    + + + +  
Sbjct: 31  LVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDRA- 87

Query: 68  PIPDSSCSQVSHAGPGLG 85
                  S    +GP  G
Sbjct: 88  --ETRLWSPQVSSGPSSG 103

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          +VI  ++ GG+      L  GD +  VN   + +       + L+ A   ++
Sbjct: 31 LVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELLRNASGSVI 81

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
           +IR +  G  A+  A L+ GDR+L +N   ++     Q V+ ++ + 
Sbjct: 28 HLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
                 +  + S+  GGVA   A L  GD L+ VN  ++      Q V  ++      + 
Sbjct: 40  TPAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGN-TLM 97

Query: 61  IGVAKPLPIPD 71
           + V      PD
Sbjct: 98  VKVVMVTRHPD 108

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
          + I  +  G  A L A L PGD + ++N       +  +A   +KG   
Sbjct: 34 LTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIKGCHD 81

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
           +IR +  G  A+  A L+ GDR+L +N   ++     Q V+ ++ +
Sbjct: 40 HLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVRKS 85

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
            +E   +I  +     A   A L  GD L ++N       +  Q V  ++ + 
Sbjct: 44 CSSEMFTLICKIQEDSPAHC-AGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG 96

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
             E V  +  +     AQL A L PGD + SVN  ++      + V  +K + 
Sbjct: 33 QRVEMVTFVARVHESSPAQL-AGLTPGDTIASVNGLNVEGIRHREIVDIIKASG 85

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
          P +   +I+ + PG  A+  A L   D +++VN   +     D  V+ ++   
Sbjct: 27 PEQKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG 78

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
            IRS+ P   A+  + L   DR++ VN   +        V A++       K+ V   
Sbjct: 35 QFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 19 AQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
           Q    L  GD ++ +N+ ++ N S  + V  LK  P G
Sbjct: 42 IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG 80

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 1   MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
                 +  + S+  GGVA   A L  GD L+ VN  ++      Q V  ++      + 
Sbjct: 60  TPAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLM 117

Query: 61  IGVAKPLPIPD 71
           + V      PD
Sbjct: 118 VKVVMVTRHPD 128

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 9  VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
           I S+V    A     L+    +  +N  ++      Q    L  +   +
Sbjct: 26 KITSIVKDSSAAR-NGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 9  VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          +I SL+ GG+A+    +  G R++ +N   +     ++ V  L  A  G + +  
Sbjct: 34 IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKT 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.41
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.38
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.37
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.32
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.32
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.3
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.3
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.3
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.29
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.29
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.28
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.27
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.27
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.27
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.26
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.26
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.25
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.25
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.25
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.25
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.25
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.25
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.24
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.24
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.24
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.23
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.23
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.23
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.23
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.23
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.23
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.23
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.22
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.22
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.22
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.22
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.22
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.22
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.21
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.21
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.21
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.2
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.2
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.2
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.2
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.2
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.2
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.19
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.19
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.18
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.18
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.18
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.18
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.18
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.18
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.17
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.17
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.17
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.17
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.17
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.17
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.17
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.17
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.17
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.17
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.17
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.17
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.17
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.16
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.16
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.16
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.16
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.16
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.16
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.16
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.16
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.15
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.15
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.15
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.15
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.15
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.15
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.15
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.15
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.15
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.15
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.15
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.15
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.14
2ego_A	96	General receptor for phosphoinositides 1- associat	99.14
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.14
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.14
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.14
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.14
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.14
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.13
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.12
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.12
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.12
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.12
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.12
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.11
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.11
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.11
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.11
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.1
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.1
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.1
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.1
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.1
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.1
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.09
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.09
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.09
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.09
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.09
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.09
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.08
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.07
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.07
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.07
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.07
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.06
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.06
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.05
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.04
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.04
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.03
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.03
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.02
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.02
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.01
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.01
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.01
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.0
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.0
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.99
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.99
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.99
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.99
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.99
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.98
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.97
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.97
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.97
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.97
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.97
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.96
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.95
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.95
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.94
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.92
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.91
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.89
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.89
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.87
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.86
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.85
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.84
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.82
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.82
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.81
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.8
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.8
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.79
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.21
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.71
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.7
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.69
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.65
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.64
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.63
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.61
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.58
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.58
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.56
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.49
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.47
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.46
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.45
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.41
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.38
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.37
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.31
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.29
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.28
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.27
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.2
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.19
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.16
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.12
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.07
3k50_A	403	Putative S41 protease; structural genomics, joint	98.03
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.02
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.88
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.71
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.47
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.19
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.97

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=88.85  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=58.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      ...+||++|.++++|++.|+|++||+|++|||+++.+++|.+++++|++.+. .+++|++.++..
T Consensus        27 ~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~~   91 (95)
T 3gge_A           27 VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKK   91 (95)
T ss_dssp             SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECS
T ss_pred             CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECccc
Confidence            4568999999999999999999999999999999999999999999999864 379999988764

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.38  E-value=2.7e-12  Score=87.94  Aligned_cols=65  Identities=51%  Similarity=0.771  Sum_probs=59.6

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...+++|..|.++++|+++|+|++||+|++|||+++.+++|++++.+|+..+...|.|+|.|+..
T Consensus        42 ~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~~  106 (108)
T 2d92_A           42 TRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGPS  106 (108)
T ss_dssp             TCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCCC
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCC
Confidence            46789999999999999999999999999999999999999999999999755689999998653

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.37  E-value=3.4e-12  Score=87.61  Aligned_cols=64  Identities=38%  Similarity=0.534  Sum_probs=58.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC--CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA--PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~--~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.+++|++++.+|+..  ....|.|+|.|...
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            57899999999999999999999999999999999999999999999987  33579999999764

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.32  E-value=8.8e-12  Score=82.58  Aligned_cols=62  Identities=27%  Similarity=0.412  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++|+|+.||+|++|||+++.++++++++++|+..+ +.+.|+|.+...
T Consensus        21 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~v~L~v~~~~~   82 (88)
T 3e17_A           21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDLE   82 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECCC--
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEeCCCc
Confidence            47999999999999999999999999999999999999999999999986 699999987543

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.32  E-value=1.6e-11  Score=83.97  Aligned_cols=64  Identities=36%  Similarity=0.576  Sum_probs=59.1

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+.|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..|.|+|.|...
T Consensus        30 ~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~   93 (106)
T 4amh_A           30 GDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTS-DFVYLKVAKPGS   93 (106)
T ss_dssp             TBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCC-SEEEEEEECCSS
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC-CeEEEEEEeCCC
Confidence            3558999999999999999999999999999999999999999999999875 699999999764

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.30  E-value=1.5e-11  Score=84.64  Aligned_cols=72  Identities=25%  Similarity=0.384  Sum_probs=63.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCccccc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQV   77 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~~~~   77 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|........+.+.
T Consensus        34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~~~~~~v~p~  105 (113)
T 2g5m_B           34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRERPGEQSEVAQL  105 (113)
T ss_dssp             CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSC-SSCEEEEEECCCCTTSSCSSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-CeEEEEEEeCCCCCcchhhhh
Confidence            569999999999999999999999999999999999999999999999874 789999999876555554443

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=1e-11  Score=85.46  Aligned_cols=63  Identities=29%  Similarity=0.512  Sum_probs=58.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC---CCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP---RGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~---~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++|+|++||+|++|||+++.+++|++++++|+...   ...+.|.|.|...
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            47999999999999999999999999999999999999999999999987   6789999988653

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.30  E-value=2e-11  Score=83.00  Aligned_cols=68  Identities=35%  Similarity=0.544  Sum_probs=58.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSS   73 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~   73 (144)
                      +.|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|........
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~~~~~~   99 (105)
T 2awx_A           32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLKVAKPTSMYISR   99 (105)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC-SEEEEEEECCCC-----
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEcCCCCCCcc
Confidence            458999999999999999999999999999999999999999999999874 79999999977644433

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.29  E-value=1.2e-11  Score=86.51  Aligned_cols=62  Identities=31%  Similarity=0.431  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+|+..+ ..|.|+|.|..
T Consensus        52 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~v~R~~  113 (118)
T 3b76_A           52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS-SSIVLKALEVK  113 (118)
T ss_dssp             CCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCC-SEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            568999999999999999999999999999999999999999999999885 78999998754

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=2e-11  Score=84.79  Aligned_cols=63  Identities=24%  Similarity=0.366  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.+++|.+++.+|+..+ ..|.|+|.|...
T Consensus        48 ~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~  110 (117)
T 1ujd_A           48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRLDLN  110 (117)
T ss_dssp             CEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEESSCC
T ss_pred             CcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC-CEEEEEEEECCc
Confidence            458999999999999999999999999999999999999999999999864 789999998764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.28  E-value=1.8e-11  Score=86.84  Aligned_cols=64  Identities=23%  Similarity=0.359  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~   68 (144)
                      ..++||..|.++++|+++|+|++||+|++|||+++.+++|.+++++|+.. ....|.|+|.|..+
T Consensus        64 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A           64 RLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             CEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence            45899999999999999999999999999999999999999999999987 34689999998654

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=2e-11  Score=83.25  Aligned_cols=63  Identities=24%  Similarity=0.430  Sum_probs=58.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~  101 (107)
T 1wf8_A           39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGREKP  101 (107)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC-SEEEEEEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-CeEEEEEEeCCC
Confidence            568999999999999999999999999999999999999999999999874 799999998664

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.27  E-value=7.2e-12  Score=88.73  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|.|++||+|++|||+++.+++|++++++|+..+...|.|+|.|...
T Consensus        56 ~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence            4689999999999999994599999999999999999999999999999876689999988653

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.27  E-value=2.1e-11  Score=90.50  Aligned_cols=61  Identities=25%  Similarity=0.402  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.+++|.+++.+|+..+ ..|.|+|.|.
T Consensus       110 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g-~~v~L~V~R~  170 (170)
T 3egg_C          110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRE  170 (170)
T ss_dssp             SBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCC-SEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEeC
Confidence            568999999999999999999999999999999999999999999999975 7999999873

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=3.3e-11  Score=83.90  Aligned_cols=62  Identities=39%  Similarity=0.598  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      +.|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..|.|+|.|..
T Consensus        53 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~~  114 (117)
T 2byg_A           53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTS-EVVYLKVGKPT  114 (117)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            568999999999999999999999999999999999999999999999874 78999998854

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.26  E-value=5.9e-11  Score=80.70  Aligned_cols=64  Identities=34%  Similarity=0.520  Sum_probs=58.7

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...|++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        36 ~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   99 (106)
T 3axa_A           36 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQGA   99 (106)
T ss_dssp             SSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEECCCS
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence            3568999999999999999999999999999999999999999999998864 799999998764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.25  E-value=4.1e-11  Score=79.65  Aligned_cols=62  Identities=19%  Similarity=0.343  Sum_probs=57.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.++++|+++|+|++||+|++|||+++.+++|.+++.+|+..+ ..+.|+|.+..
T Consensus        27 ~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~   88 (93)
T 3o46_A           27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAITFKIIPGS   88 (93)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC-EEEEEEEECC-
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeCC
Confidence            468999999999999999999999999999999999999999999999986 58999998754

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.25  E-value=1.3e-11  Score=87.20  Aligned_cols=64  Identities=30%  Similarity=0.457  Sum_probs=58.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC------CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA------PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~------~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++|+|++||+|++|||+++.+++|.+++.+|+..      ....|.|+|.|...
T Consensus        54 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             EEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            35899999999999999999999999999999999999999999999975      23689999998764

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=4.5e-11  Score=81.51  Aligned_cols=64  Identities=31%  Similarity=0.367  Sum_probs=57.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..+++|..|.++++|+++|.|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|..+.
T Consensus        40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~~  103 (107)
T 1uhp_A           40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAK-EPIVVQVLRRTSG  103 (107)
T ss_dssp             SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEEECCSS
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCCCC
Confidence            568999999999999999339999999999999999999999999999875 6899999887653

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.25  E-value=2.6e-11  Score=80.13  Aligned_cols=55  Identities=18%  Similarity=0.234  Sum_probs=50.9

Q ss_pred             EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +|.++.+++||+++| |+.||+|++|||+++.+++|++++++|+..+ ..|+|+|..
T Consensus        26 ~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g-~~V~L~v~p   80 (82)
T 1r6j_A           26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEEE
T ss_pred             EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCC-CEEEEEEEe
Confidence            478999999999999 9999999999999999999999999999764 789999864

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.25  E-value=4.4e-11  Score=83.67  Aligned_cols=64  Identities=30%  Similarity=0.419  Sum_probs=57.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.++++|+++|.|++||+|++|||+++.++++.+++.+++..+ ..|.|+|.|....
T Consensus        52 ~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~  115 (120)
T 2iwo_A           52 DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVVAGGDV  115 (120)
T ss_dssp             EEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC-SEEEEEEECCTTS
T ss_pred             CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCcc
Confidence            358999999999999999449999999999999999999999999999986 6899999997653

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=3.5e-11  Score=81.78  Aligned_cols=63  Identities=29%  Similarity=0.428  Sum_probs=58.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      +.+++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~~~   99 (105)
T 1wha_A           37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCC-SCEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            578999999999999999999999999999999999999999999999874 689999998754

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.24  E-value=6e-11  Score=80.04  Aligned_cols=63  Identities=38%  Similarity=0.575  Sum_probs=58.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   95 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG-PVVRLVVRRRQP   95 (102)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC-SEEEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            569999999999999999999999999999999999999999999999864 799999998664

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.24  E-value=3.4e-11  Score=80.77  Aligned_cols=63  Identities=29%  Similarity=0.472  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.++..+++..+ +.+.|+|.|+.+
T Consensus        30 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~p   92 (96)
T 2qkv_A           30 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN-GKVSMEVTRPKP   92 (96)
T ss_dssp             SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEECCCC
T ss_pred             CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-CcEEEEEEeCCc
Confidence            358999999999999999999999999999999999999999999998875 689999998754

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.24  E-value=7.2e-11  Score=78.33  Aligned_cols=62  Identities=44%  Similarity=0.648  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        32 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~g   93 (94)
T 2fe5_A           32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKPG   93 (94)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEcCC
Confidence            458999999999999999999999999999999999999999999999875 58999998854

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=2.6e-11  Score=82.73  Aligned_cols=62  Identities=23%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC----CCCeEEEEEEcCCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA----PRGIVKIGVAKPLP   68 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~----~~~~V~L~V~r~~~   68 (144)
                      .++|..|.++++|+++|+|++||+|++|||+++.+++|++++++|+..    ....+.|+|.|...
T Consensus        33 ~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~   98 (103)
T 1ufx_A           33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             SCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred             cEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEccc
Confidence            359999999999999999999999999999999999999999999985    45689999988664

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.23  E-value=6.8e-11  Score=78.26  Aligned_cols=62  Identities=34%  Similarity=0.564  Sum_probs=57.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..+ ..+.|+|.|..
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~   89 (92)
T 2qg1_A           28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEVGRIS   89 (92)
T ss_dssp             SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEccc
Confidence            468999999999999999999999999999999999999999999998875 68999999875

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.23  E-value=8e-11  Score=78.50  Aligned_cols=63  Identities=32%  Similarity=0.515  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.++..+++..+ ..+.|+|.|...
T Consensus        32 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~~~   94 (96)
T 1d5g_A           32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQS   94 (96)
T ss_dssp             SSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEECCSC
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEcCCC
Confidence            458999999999999999999999999999999999999999999999864 789999988653

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.23  E-value=7.3e-11  Score=77.02  Aligned_cols=61  Identities=30%  Similarity=0.473  Sum_probs=55.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r   65 (144)
                      ..+++|..|.+++||+++|+|++||+|++|||+++.++++.++.++++..+ ...+.|+|.|
T Consensus        24 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            457999999999999999999999999999999999999999999999874 3688998865

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=4.6e-11  Score=79.09  Aligned_cols=63  Identities=16%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||++++.|++||+|++|||+++.+++|++++++|+..+ ..+.|+|.|...
T Consensus        24 ~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~   86 (88)
T 1kwa_A           24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIVPSYR   86 (88)
T ss_dssp             GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-CcEEEEEECCcC
Confidence            357999999999999994349999999999999999999999999999987 489999988653

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.23  E-value=7.1e-11  Score=79.53  Aligned_cols=63  Identities=35%  Similarity=0.475  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|+.||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        36 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   98 (101)
T 2jik_A           36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLE   98 (101)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCC-SEEEEEEEEESC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeCCC
Confidence            468999999999999999999999999999999999999999999999874 689999988654

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.23  E-value=6.4e-11  Score=79.11  Aligned_cols=63  Identities=30%  Similarity=0.430  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+|+.. ...+.|+|.|...
T Consensus        31 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~   93 (97)
T 2jil_A           31 SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC-GQEAALLIEYDVS   93 (97)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence            46899999999999999999999999999999999999999999999984 4799999998664

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.22  E-value=7.7e-11  Score=79.66  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=56.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ...|++|..|.+++||+++| |++||+|++|||+++.+++|++++.+++......+.|+|.|.
T Consensus        43 ~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           43 TDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             TCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            46789999999999999999 999999999999999999999999999876556899999773

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=1.3e-10  Score=81.23  Aligned_cols=64  Identities=20%  Similarity=0.430  Sum_probs=58.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++|||+++.++++.+++++|+..+ ...|.|+|.|...
T Consensus        43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            457999999999999999999999999999999999999999999999864 4689999998764

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=5.9e-11  Score=82.47  Aligned_cols=62  Identities=27%  Similarity=0.429  Sum_probs=57.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++|+|++||+|++|||+++.++++++++.+|+.. ...|.|+|.|...
T Consensus        42 ~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~  103 (117)
T 1v62_A           42 SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-SEKVRLEILPVPQ  103 (117)
T ss_dssp             CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC-SSEEEEEECCBTT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCC
Confidence            3599999999999999999999999999999999999999999999975 4799999998654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.22  E-value=8.8e-11  Score=78.23  Aligned_cols=63  Identities=32%  Similarity=0.492  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   90 (95)
T 2vwr_A           28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASG-ERVNLTIARPGK   90 (95)
T ss_dssp             SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEEESC
T ss_pred             CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEcCCc
Confidence            458999999999999999999999999999999999999999999998874 799999988654

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.22  E-value=4.9e-11  Score=83.87  Aligned_cols=63  Identities=33%  Similarity=0.510  Sum_probs=57.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCC-CCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLN-NASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~-~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++. ++++.+++.+|+..+ ..|.|+|.|...
T Consensus        53 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  116 (128)
T 2db5_A           53 KVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT-GSLRLIVAREPV  116 (128)
T ss_dssp             CEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC-SEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC-CeEEEEEEcCCC
Confidence            348999999999999999999999999999999997 999999999999864 799999998754

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=2.3e-11  Score=82.51  Aligned_cols=64  Identities=25%  Similarity=0.398  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++|||+++.++++.+++++|+..+ ...|.|+|.|...
T Consensus        33 ~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            468999999999999999999999999999999999999999999998873 3689999998654

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.21  E-value=6.7e-11  Score=81.11  Aligned_cols=63  Identities=29%  Similarity=0.469  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.++..+++..+ +.+.|+|.|..+
T Consensus        24 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~   86 (106)
T 2la8_A           24 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSMEVTRPKP   86 (106)
T ss_dssp             SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB-SCEEEEEEECCS
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC-CeEEEEEEeCCC
Confidence            358999999999999999999999999999999999999999999998875 689999998654

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.21  E-value=1.4e-10  Score=77.62  Aligned_cols=62  Identities=31%  Similarity=0.486  Sum_probs=56.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++|+|++||+|++|||+++.++++.++..+++.. ...+.|+|.|...
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~   91 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETVTLKIKKQTD   91 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence            5899999999999999999999999999999999999999999999954 4789999998764

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.21  E-value=1.3e-10  Score=82.06  Aligned_cols=63  Identities=30%  Similarity=0.476  Sum_probs=57.8

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++|+|+.||+|++|||+++.+++|.+++++|+..+ ...|.|+|.|...
T Consensus        43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            46999999999999999999999999999999999999999999999885 3689999998764

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.20  E-value=9.8e-11  Score=76.80  Aligned_cols=60  Identities=18%  Similarity=0.331  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.+++||+++| |++||+|++|||+++.++++.++.++++..+ ..+.|+|.|..
T Consensus        26 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~   85 (87)
T 2pa1_A           26 TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT   85 (87)
T ss_dssp             EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence            489999999999999999 9999999999999999999999999999986 78999999865

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=2.9e-11  Score=82.97  Aligned_cols=64  Identities=31%  Similarity=0.377  Sum_probs=58.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|....
T Consensus        43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~r~~~~  106 (111)
T 1uju_A           43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDGFES  106 (111)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCS-SEEEECCCCCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCCC
Confidence            568999999999999999999999999999999999999999999998864 7899999887643

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.20  E-value=1.4e-10  Score=76.48  Aligned_cols=62  Identities=26%  Similarity=0.336  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.+++|.++.++|+.. ...+.|+|.|...
T Consensus        27 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~   88 (90)
T 2he4_A           27 RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST   88 (90)
T ss_dssp             SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence            3589999999999999999 999999999999999999999999999987 4799999998653

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.20  E-value=1.5e-10  Score=77.20  Aligned_cols=62  Identities=21%  Similarity=0.347  Sum_probs=57.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++++.++..+++.. ...+.|+|.|...
T Consensus        29 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~   90 (96)
T 2v90_A           29 RPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEA   90 (96)
T ss_dssp             CEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCT
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCC
Confidence            3489999999999999999 999999999999999999999999999987 4799999999764

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=77.31  Aligned_cols=62  Identities=32%  Similarity=0.511  Sum_probs=57.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~   91 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRDEA   91 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEECSS
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcCCC
Confidence            58999999999999999999999999999999999999999999999876 799999998664

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=8.4e-11  Score=81.89  Aligned_cols=63  Identities=29%  Similarity=0.435  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..|.|+|.|...
T Consensus        52 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~  114 (117)
T 2fne_A           52 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSSDE  114 (117)
T ss_dssp             EEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEEECSC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence            358999999999999999999999999999999999999999999999876 579999998653

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=1.2e-10  Score=77.11  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=56.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++| |+.||+|++|||+++.++++.++..+++..+ ..+.|+|.|..+
T Consensus        23 ~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~   84 (91)
T 2f5y_A           23 DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRMVP   84 (91)
T ss_dssp             SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEEECC-
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            3578999999999999999 9999999999999999999999999999865 689999998765

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.19  E-value=1.6e-10  Score=75.78  Aligned_cols=61  Identities=23%  Similarity=0.339  Sum_probs=55.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++.. ...+.|+|.|..
T Consensus        26 ~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g   86 (88)
T 2uzc_A           26 NMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES   86 (88)
T ss_dssp             TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence            3479999999999999999 999999999999999999999999999887 478999998865

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-10  Score=78.72  Aligned_cols=62  Identities=27%  Similarity=0.369  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      .+++|..|.++++|++++.|++||+|++|||+++.+++++++.++|+.. ....|.|+|.|..
T Consensus        37 ~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           37 PTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP   99 (101)
T ss_dssp             CCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            3699999999999999666999999999999999999999999999984 3468999998864

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.18  E-value=2.3e-10  Score=78.24  Aligned_cols=64  Identities=33%  Similarity=0.514  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ...|.|+|.|...
T Consensus        38 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  102 (111)
T 2koj_A           38 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE  102 (111)
T ss_dssp             SSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCC
T ss_pred             CcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            368999999999999999999999999999999999999999999999862 4689999988764

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.18  E-value=1.3e-10  Score=77.79  Aligned_cols=62  Identities=31%  Similarity=0.420  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++.. ...+.|+|.|..
T Consensus        36 ~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g   97 (98)
T 1ihj_A           36 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA-DFKIELEIQTFD   97 (98)
T ss_dssp             EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEEC-
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Confidence            45899999999999999999999999999999999999999999999985 479999998864

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.18  E-value=1.2e-10  Score=80.85  Aligned_cols=64  Identities=23%  Similarity=0.412  Sum_probs=57.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+...+.|+|.|...
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~  104 (119)
T 1x6d_A           41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT  104 (119)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCC
Confidence            3589999999999999999999999999999999999999999999998875667788888654

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.18  E-value=1.2e-10  Score=76.73  Aligned_cols=61  Identities=20%  Similarity=0.390  Sum_probs=55.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..+ ..+.|+|.|..
T Consensus        26 ~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~   86 (89)
T 2q3g_A           26 NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACG-ERLSLGLSRAI   86 (89)
T ss_dssp             TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCT-TEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CEEEEEEEeCC
Confidence            3579999999999999999 9999999999999999999999999998874 68999998865

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.18  E-value=1.5e-10  Score=81.08  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.++++|+++|+|+.||+|++|||+++.+++|.+++.+++..+ ..|.|+|.|..
T Consensus        44 ~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~  105 (125)
T 3hpk_A           44 CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKLQ  105 (125)
T ss_dssp             CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEEEEC
T ss_pred             CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            357999999999999999999999999999999999999999999999986 57999998743

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.17  E-value=2.3e-10  Score=75.51  Aligned_cols=59  Identities=29%  Similarity=0.434  Sum_probs=52.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..+ +.+.+.+.+
T Consensus        26 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~~~~~~~~   84 (91)
T 1g9o_A           26 KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAVRLLVVD   84 (91)
T ss_dssp             CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEc
Confidence            3589999999999999999 9999999999999999999999999999886 555555544

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.3e-10  Score=78.59  Aligned_cols=63  Identities=27%  Similarity=0.418  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++|+|++||+|++||++++.++++.+++.+++.. ...+.|+|.|...
T Consensus        37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~   99 (104)
T 2djt_A           37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG-GPQLHLVIRRPLS   99 (104)
T ss_dssp             ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT-CSEEEEEECCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence            46899999999999999999999999999999999999999999999885 4789999988764

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=1.3e-10  Score=81.35  Aligned_cols=63  Identities=30%  Similarity=0.376  Sum_probs=58.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        50 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~  112 (124)
T 2daz_A           50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRNED  112 (124)
T ss_dssp             SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC-SEEEEEEEECTT
T ss_pred             cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            468999999999999999999999999999999999999999999999886 699999998754

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.17  E-value=1e-10  Score=79.36  Aligned_cols=61  Identities=26%  Similarity=0.475  Sum_probs=55.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      +.+++|..|.+++||+++|+|++||+|++|||+++.+++++++.++|+..+ ..+.|+|.+.
T Consensus        35 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~-~~v~L~V~~~   95 (97)
T 2ejy_A           35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETK-GMISLKVIPN   95 (97)
T ss_dssp             TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCC-EEEEEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence            358999999999999999999999999999999999988999999999874 6899998754

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.7e-10  Score=78.85  Aligned_cols=63  Identities=32%  Similarity=0.394  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~   97 (110)
T 1um1_A           35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSDV   97 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC-SEEEEEEECCCH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence            468999999999999999999999999999999999999999999999874 799999998753

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.17  E-value=1.2e-10  Score=79.25  Aligned_cols=63  Identities=32%  Similarity=0.605  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++.. ...+.|+|.|...
T Consensus        43 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~  105 (108)
T 2jre_A           43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNA-GNPVRLLLIRRLP  105 (108)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHH-CSEEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence            45899999999999999999999999999999999999999999999885 4789999988664

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.17  E-value=1.9e-10  Score=82.42  Aligned_cols=64  Identities=25%  Similarity=0.369  Sum_probs=57.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++++.++..+|+......+.|+|.|....
T Consensus        63 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A           63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             CCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred             CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            5699999999999999999 999999999999999999999999999985546899999997653

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.17  E-value=6.7e-11  Score=77.97  Aligned_cols=62  Identities=35%  Similarity=0.463  Sum_probs=56.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~   67 (144)
                      .+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..+. ..+.|+|.|..
T Consensus        27 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           27 EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence            579999999999999999999999999999999999999999999988752 38999998753

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-10  Score=80.28  Aligned_cols=63  Identities=32%  Similarity=0.331  Sum_probs=57.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        49 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~r~~~  111 (117)
T 2ehr_A           49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAG-NPVVFIVQSLSS  111 (117)
T ss_dssp             CCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSC-SSEEEEECCBSC
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            468999999999999999999999999999999999999999999999864 789999987654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.8e-10  Score=77.73  Aligned_cols=62  Identities=32%  Similarity=0.434  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.+++||+++|+|++||+|++|||+++.++++.++..+|+..+ ..+.|+|.|...
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCC
Confidence            58999999999999999999999999999999999999999999999885 589999988653

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.17  E-value=1.4e-10  Score=82.34  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=56.3

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |+.||+|++|||+++.++++.+++.+|+..+ ..+.|+|.+...
T Consensus        65 ~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~~~~~  125 (132)
T 3l4f_D           65 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVMVTR  125 (132)
T ss_dssp             CSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTT-TEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEECCC
Confidence            479999999999999999 9999999999999999999999999999875 789999988653

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-10  Score=81.03  Aligned_cols=63  Identities=35%  Similarity=0.476  Sum_probs=57.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..|.|+|.|...
T Consensus        46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~  108 (120)
T 2eno_A           46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLQ  108 (120)
T ss_dssp             CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHC-SEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence            568999999999999999999999999999999999999999999998864 689999988654

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.17  E-value=2.2e-10  Score=75.70  Aligned_cols=61  Identities=23%  Similarity=0.349  Sum_probs=56.2

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.+++||+++| |++||+|++|||+++.++.+.++..+++.. ...+.|+|.|...
T Consensus        27 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~   87 (91)
T 2pkt_A           27 QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGC-TDNLTLTVARSEH   87 (91)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEEECC
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence            589999999999999999 999999999999999999999999999984 5799999998664

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.16  E-value=8.4e-11  Score=81.25  Aligned_cols=63  Identities=29%  Similarity=0.408  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCC-CCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLN-NASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~-~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++. ++++.+++.+++..+ ..+.|+|.|...
T Consensus        48 ~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~-~~v~l~v~R~~~  111 (117)
T 2o2t_A           48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK-DTVQLVIARGSL  111 (117)
T ss_dssp             CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCC-SEEEEEEESSCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC-CEEEEEEEeCCc
Confidence            468999999999999999999999999999999998 899999999999864 799999998764

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=1.3e-10  Score=78.60  Aligned_cols=67  Identities=21%  Similarity=0.288  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSS   73 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~   73 (144)
                      ..+++|..|.++++|+++| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|........
T Consensus        28 ~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~g~~~~~~   94 (103)
T 1wf7_A           28 NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQRASAAAKSE   94 (103)
T ss_dssp             TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS-SEEEEEECCCSCCCCCC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcCCCC
Confidence            3468999999999999999 9999999999999999999999999998874 68999999877544433

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.16  E-value=1.3e-10  Score=78.95  Aligned_cols=60  Identities=27%  Similarity=0.408  Sum_probs=54.9

Q ss_pred             CcEEEEEEcCCChhhhcC-CcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC---CeEEEEEEc
Q psy3208           6 TVIVIRSLVPGGVAQLDA-RLIPGDRLLSVNETDLNNASLDQAVQALKGAPR---GIVKIGVAK   65 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~G-rL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~---~~V~L~V~r   65 (144)
                      .+++|..|.++++|+++| ||+.||+|++|||+++.++++.+++.+++....   ..|.|+|.|
T Consensus        43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred             CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence            479999999999999999 699999999999999999999999999998752   389999987

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.16  E-value=1.3e-10  Score=75.73  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..+ ..+.|+|.|..
T Consensus        25 ~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~   84 (85)
T 1rgw_A           25 MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQKSK   84 (85)
T ss_dssp             SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCS-SCEEEEEESCC
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            478999999999999999 9999999999999999999999999998775 57999998854

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=1e-10  Score=79.75  Aligned_cols=63  Identities=32%  Similarity=0.515  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~  103 (108)
T 1q7x_A           41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQS  103 (108)
T ss_dssp             SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTT-SEEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence            468999999999999999999999999999999999999999999999874 799999998764

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.16  E-value=1.4e-10  Score=79.36  Aligned_cols=63  Identities=32%  Similarity=0.565  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      +.|++|..|.++++|+++|+|+.||+|++|||+++.++++.+++.+++..+ ..|.|+|.|...
T Consensus        37 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~~~   99 (111)
T 2dlu_A           37 TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDPA   99 (111)
T ss_dssp             SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC-SEEEEEEEESCT
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeCCC
Confidence            368999999999999999999999999999999999999999999998864 689999988654

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.16  E-value=2.1e-10  Score=79.33  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++| |+.||+|++|||+++.++++.++.++|+..+...+.|+|.|..+
T Consensus        43 ~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~~  105 (109)
T 2vsv_A           43 NAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLD  105 (109)
T ss_dssp             SSSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC-
T ss_pred             CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECCC
Confidence            3578999999999999999 99999999999999999999999999998865569999998764

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.16  E-value=1.7e-10  Score=76.06  Aligned_cols=60  Identities=38%  Similarity=0.421  Sum_probs=54.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|.
T Consensus        30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~   89 (90)
T 1qav_A           30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG-KEVVLEVKYM   89 (90)
T ss_dssp             EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEEe
Confidence            57999999999999999339999999999999999999999999999875 6899999774

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.15  E-value=1.7e-10  Score=75.57  Aligned_cols=58  Identities=29%  Similarity=0.423  Sum_probs=52.7

Q ss_pred             CcEEEEEEcCCChhhh-cCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           6 TVIVIRSLVPGGVAQL-DARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~-~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      .+++|..|.+++||++ +| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.+
T Consensus        28 ~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~~   86 (87)
T 4e34_A           28 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVY   86 (87)
T ss_dssp             EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEE
Confidence            4799999999999999 57 9999999999999999999999999999875 688888864

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.15  E-value=2e-10  Score=76.45  Aligned_cols=61  Identities=26%  Similarity=0.397  Sum_probs=55.1

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...|++|..|.+++||++ | |++||+|++||++++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        33 ~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~   93 (95)
T 1mfg_A           33 DDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVREV   93 (95)
T ss_dssp             TCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCC-SEEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCC-CeEEEEEEeCC
Confidence            356899999999999999 8 9999999999999999999999999998764 78999998853

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.15  E-value=2.6e-10  Score=75.27  Aligned_cols=60  Identities=22%  Similarity=0.344  Sum_probs=54.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|++|..|.++++|+++| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|.
T Consensus        31 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~   90 (91)
T 1m5z_A           31 EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG-NKLDLVISRN   90 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEeC
Confidence            4689999999999999999 9999999999999999999999988888764 6899999874

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.15  E-value=3.8e-10  Score=75.19  Aligned_cols=63  Identities=32%  Similarity=0.403  Sum_probs=56.6

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++.. ...+.|+|.|...
T Consensus        32 ~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~   94 (97)
T 2w4f_A           32 DDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA-GTAVQMRVWRERE   94 (97)
T ss_dssp             TBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEECCSS
T ss_pred             CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC-CCeEEEEEEeCCc
Confidence            35789999999999999999 999999999999999999998888888775 4799999999764

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=4e-10  Score=76.99  Aligned_cols=63  Identities=32%  Similarity=0.398  Sum_probs=57.1

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...+++|..|.+++||+++| |++||+|++||++++.++++.+++..++.. ...|.|+|.|...
T Consensus        44 ~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~  106 (110)
T 1x5q_A           44 DDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA-GTAVQMRVWRESG  106 (110)
T ss_dssp             TCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEEECSS
T ss_pred             CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCC-CCeEEEEEEECCc
Confidence            35789999999999999999 999999999999999999999998888875 4799999999764

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.15  E-value=2.5e-10  Score=80.16  Aligned_cols=63  Identities=32%  Similarity=0.417  Sum_probs=57.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.++.++|+..+ ..+.|+|.|...
T Consensus        58 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  120 (123)
T 2iwq_A           58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSIIS  120 (123)
T ss_dssp             CCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence            358999999999999999999999999999999999999999999999885 589999988653

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.15  E-value=2.7e-10  Score=79.59  Aligned_cols=63  Identities=33%  Similarity=0.515  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~   67 (144)
                      ..+++|..|.+++||+++|+|++||+|++|||+++.++++.+++++|+..+ ...|.|+|.|..
T Consensus        57 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             SCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            368999999999999999999999999999999999999999999999863 468999998864

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.15  E-value=2.2e-10  Score=80.73  Aligned_cols=62  Identities=32%  Similarity=0.395  Sum_probs=56.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+|+..+ ..|.|+|.|...
T Consensus        65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  126 (128)
T 1nf3_C           65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVRPANQ  126 (128)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTT-TSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence            47999999999999999988999999999999999999999999999875 579999988653

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.15  E-value=2.9e-10  Score=78.24  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        48 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~~  109 (112)
T 2r4h_A           48 NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRGE  109 (112)
T ss_dssp             TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEECCE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            458999999999999999999999999999999999999999999998864 68999998854

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.15  E-value=1.8e-10  Score=78.17  Aligned_cols=61  Identities=28%  Similarity=0.355  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCChhhhc-CCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLD-ARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~-GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++ | |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.+...
T Consensus        35 ~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~   96 (103)
T 2dc2_A           35 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHCC-SEEEEEEEECC-
T ss_pred             CCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEecCC
Confidence            47999999999999996 6 9999999999999999999999999999986 689999988654

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.15  E-value=1.9e-10  Score=78.05  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=55.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++| |+.||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        25 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g-~~v~l~v~r~~   85 (106)
T 3ngh_A           25 TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDGD   85 (106)
T ss_dssp             CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTT-TEEEEEEECHH
T ss_pred             CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CEEEEEEEECC
Confidence            4589999999999999999 9999999999999999999999999998764 79999998854

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.14  E-value=3.3e-10  Score=75.93  Aligned_cols=60  Identities=18%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      |++|..|.+++||+++| |+.||+|++|||.++.++++.++..+++..+ ..+.|+|.|...
T Consensus        35 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g-~~v~l~v~r~~~   94 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEECSCS
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC-CEEEEEEEECCC
Confidence            67999999999999999 9999999999999999999999999999764 799999998653

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.14  E-value=3e-10  Score=75.95  Aligned_cols=60  Identities=23%  Similarity=0.359  Sum_probs=55.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..+++|..|.+++||+++| |++||+|++||++++.++++.++..+|+..+ ..+.|+|.+.
T Consensus        36 ~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~   95 (96)
T 2ego_A           36 EMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASG-NVLRLETLYG   95 (96)
T ss_dssp             CEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEEECC
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEEC
Confidence            3589999999999999999 9999999999999999999999999999985 5899998763

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.14  E-value=3.3e-10  Score=74.70  Aligned_cols=62  Identities=24%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++|+|+.||+|++|||+++.++++.++..+++... ..+.|+|.|...
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~   84 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDER   84 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC---
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCCc
Confidence            47899999999999999999999999999999999889999999999875 589999998664

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.14  E-value=2.2e-10  Score=78.25  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |+.||+|++|||+++.+++|.+++.+++..+ ..+.|+|.|...
T Consensus        45 ~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~  105 (109)
T 1q3o_A           45 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVMVTR  105 (109)
T ss_dssp             SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CEEEEEEEECCC
Confidence            379999999999999999 9999999999999999999999999999874 689999987543

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.14  E-value=3.7e-10  Score=77.88  Aligned_cols=62  Identities=19%  Similarity=0.379  Sum_probs=56.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCc-CCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARL-IPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL-~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++| | ++||+|++|||+++.++++.+++++|+..+ ..+.|+|.|...
T Consensus        47 ~~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  109 (113)
T 1va8_A           47 MDSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSSG  109 (113)
T ss_dssp             SSSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred             CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence            4689999999999999999 6 999999999999999999999999999876 689999988654

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.14  E-value=1.9e-10  Score=79.24  Aligned_cols=63  Identities=37%  Similarity=0.524  Sum_probs=58.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      .+++|..|.++++|+++|+|++||+|++||++++.++++.+++.+++..+ ..|.|+|.|....
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~~  105 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDEAH  105 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECCSSC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeCCcc
Confidence            58999999999999999999999999999999999999999999999876 7999999987643

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.14  E-value=2.6e-10  Score=76.96  Aligned_cols=61  Identities=43%  Similarity=0.463  Sum_probs=56.3

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~   95 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP   95 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEEECH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECc
Confidence            48999999999999999999999999999999999999999999999864 78999998853

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.8e-10  Score=75.31  Aligned_cols=62  Identities=39%  Similarity=0.537  Sum_probs=56.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.++++|+++|.|++||+|++||++++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        29 ~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~   90 (93)
T 2dkr_A           29 NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP   90 (93)
T ss_dssp             SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC-SEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEeCC
Confidence            468999999999999999559999999999999999999999999999875 68999998754

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.12  E-value=2.5e-10  Score=80.23  Aligned_cols=63  Identities=17%  Similarity=0.396  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+|+.. ...+.|+|.|...
T Consensus        45 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~  107 (129)
T 2dmz_A           45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA-GQVVHLTLVRRKT  107 (129)
T ss_dssp             CCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC-CSSEEEEEEEESS
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence            46899999999999999999999999999999999999999999999984 4789999988664

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=1.4e-10  Score=78.18  Aligned_cols=62  Identities=16%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++|+|+.||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        36 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   97 (103)
T 1wfv_A           36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGTG   97 (103)
T ss_dssp             EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC-SEECEEEECTTC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            48999999999999999999999999999999999999999999998654 689999998764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=3.5e-10  Score=76.75  Aligned_cols=61  Identities=26%  Similarity=0.347  Sum_probs=55.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++| |++||+|++|||+++.++++.+++.+|+. . ..+.|+|.|...
T Consensus        40 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-~~v~l~v~r~~~  100 (104)
T 1wi2_A           40 QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-A-REISMRVRFFSG  100 (104)
T ss_dssp             CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-S-SSEEEEEECCCC
T ss_pred             CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-C-CEEEEEEEECCC
Confidence            3589999999999999999 99999999999999999999999999998 3 589999988653

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=2.1e-10  Score=76.46  Aligned_cols=62  Identities=18%  Similarity=0.329  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |++||+|++||++++.++++.++..+++..+ ..+.|+|.|...
T Consensus        29 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~   90 (94)
T 1vb7_A           29 HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSG   90 (94)
T ss_dssp             TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred             CCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCc
Confidence            3589999999999999999 9999999999999999999999999999886 789999999764

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.12  E-value=1.6e-10  Score=76.47  Aligned_cols=62  Identities=19%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++| |++||+|++|||+++.++++.++..+|+.. ...+.|+|.|...
T Consensus        26 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~   87 (91)
T 2vsp_A           26 LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKA   87 (91)
T ss_dssp             CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC---
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCc
Confidence            4588999999999999999 999999999999999989999999999987 5799999998653

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.11  E-value=2.7e-10  Score=75.64  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.+++||+++| |++||+|++|||+++.+++|.++..+|+..+ ..+.+.+.|..
T Consensus        29 ~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~~~~~~~r~~   88 (95)
T 3r68_A           29 KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLLVLDKE   88 (95)
T ss_dssp             CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEECCc
Confidence            489999999999999999 9999999999999999999999999999975 67777766644

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.11  E-value=5.6e-10  Score=71.62  Aligned_cols=60  Identities=25%  Similarity=0.374  Sum_probs=54.5

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .|++|..|.++++|+++|+|++||+|++||++++.++++.++..+++... ..+.|+|.|.
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   80 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD   80 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC-
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeC
Confidence            47899999999999999999999999999999999889999999999875 5899999874

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.11  E-value=2.6e-10  Score=76.36  Aligned_cols=60  Identities=22%  Similarity=0.261  Sum_probs=54.2

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      .|++|..|.+++||+++| |++||+|++|||+++.++++.++.++|+..+...+.|+|.|.
T Consensus        33 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~   92 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE   92 (98)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHH
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence            489999999999999999 999999999999999999999999999988544667888764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.11  E-value=3.1e-10  Score=83.69  Aligned_cols=63  Identities=37%  Similarity=0.569  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus       129 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~  191 (196)
T 3gsl_A          129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKPSN  191 (196)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC-EEEEEEEEEESC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC-CeEEEEEeCCCC
Confidence            468999999999999999999999999999999999999999999999874 789999998654

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.10  E-value=2.6e-10  Score=77.04  Aligned_cols=61  Identities=26%  Similarity=0.397  Sum_probs=55.6

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...|++|..|.+++||++ | |++||+|++||++++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        41 ~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~  101 (103)
T 1n7t_A           41 DDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVREV  101 (103)
T ss_dssp             SCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHHHCC-SEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhhcCC-CeEEEEEEecC
Confidence            356899999999999999 8 9999999999999999999999999998764 78999999864

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.10  E-value=3.2e-10  Score=78.92  Aligned_cols=61  Identities=23%  Similarity=0.359  Sum_probs=54.4

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC---CCCeEEEEEEcCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA---PRGIVKIGVAKPL   67 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~---~~~~V~L~V~r~~   67 (144)
                      .++|.+|.+++||+++|.|++||+|++|||+++.+++|++++++|+..   ....|.|+|.|..
T Consensus        44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~  107 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence            499999999999999944999999999999999999999999999865   2368999999854

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3.6e-10  Score=75.12  Aligned_cols=61  Identities=21%  Similarity=0.283  Sum_probs=55.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.+++||+++|.|++||+|++||++++ +.+++++.++|+..+ ..+.|+|.|..
T Consensus        28 ~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~-~~v~l~v~~~~   88 (91)
T 2e7k_A           28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNAS-GSVILKILSGP   88 (91)
T ss_dssp             SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCC-SSBCEEEECCS
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            35899999999999999877999999999999999 889999999999874 68999998754

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.10  E-value=5.1e-10  Score=74.43  Aligned_cols=61  Identities=26%  Similarity=0.446  Sum_probs=54.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      +.+++|..|.+++||+++| |+.||+|++||++++.++++.+++..++.  ...+.|+|.|...
T Consensus        28 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~--g~~v~l~v~R~~~   88 (93)
T 2dls_A           28 DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS--GAYVALTLLGSSS   88 (93)
T ss_dssp             SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS--SSEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCC
Confidence            4589999999999999999 99999999999999999999988888874  3699999999764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.2e-10  Score=75.52  Aligned_cols=62  Identities=23%  Similarity=0.312  Sum_probs=55.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++| |++||+|++||++++.++++.++..+++..+ ..+.|+|.|...
T Consensus        31 ~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~g~   92 (94)
T 2eeg_A           31 SAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSSGPS   92 (94)
T ss_dssp             TSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCC-SCEEEEEECCSS
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            4579999999999999999 9999999999999999999999999998854 689999988653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=2e-10  Score=79.70  Aligned_cols=62  Identities=24%  Similarity=0.345  Sum_probs=55.8

Q ss_pred             CcEEEEEEcCCChhhhc--CCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC---CeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLD--ARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR---GIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~--GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~---~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++  | |++||+|++|||+++.+++|.+++.+++..+.   ..+.|+|.|...
T Consensus        41 ~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           41 MPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             EEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred             CCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence            37999999999999999  6 99999999999999999999999999988742   379999998654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=2.3e-10  Score=79.20  Aligned_cols=62  Identities=37%  Similarity=0.490  Sum_probs=55.6

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...|++|..|.++++|+ +| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        44 ~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~  105 (117)
T 2csj_A           44 GETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRPRK  105 (117)
T ss_dssp             CCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSC-SEEEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcCC-CeEEEEEEECCc
Confidence            35689999999999997 67 9999999999999999999999999999864 799999988654

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=7.3e-10  Score=74.53  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++| |++||+|++||++++.++++.+++..++. . ..+.|+|.|...
T Consensus        35 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~-~~v~l~v~R~g~   95 (100)
T 2eeh_A           35 GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-S-SRLHMMVRRMGS   95 (100)
T ss_dssp             TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-C-SSEEEEEEECSC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-C-CEEEEEEEECCc
Confidence            3589999999999999999 99999999999999999989999999987 3 689999998764

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=75.69  Aligned_cols=60  Identities=25%  Similarity=0.459  Sum_probs=54.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|++|..|.++++|+++| |+.||+|++|||+++.++++.++..+++..+ ..+.|+|.|.
T Consensus        22 ~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   81 (83)
T 2kv8_A           22 QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAEG   81 (83)
T ss_dssp             SSSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-SCEEEEEECC
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcC
Confidence            3478999999999999999 9999999999999999999999999998775 6799999885

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.09  E-value=5.3e-10  Score=75.41  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=56.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |+.||+|++|||+++.++++.++..+++..+ ..+.|+|.|...
T Consensus        29 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g-~~v~l~v~r~~~   90 (102)
T 2d90_A           29 QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLLVLDKEA   90 (102)
T ss_dssp             SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHST-TEEEEEECSTTC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEECCC
Confidence            4689999999999999999 9999999999999999999999999998864 699999987653

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.09  E-value=5.9e-10  Score=73.95  Aligned_cols=62  Identities=23%  Similarity=0.363  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.++++|+++|+|++||+|++|||+++.++++.++..+++.. ...+.|+|.|..
T Consensus        32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~g   93 (97)
T 2iwn_A           32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT-GQTVLLTLMRRG   93 (97)
T ss_dssp             CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC-CSEEEEEEEEEE
T ss_pred             CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            46899999999999999999999999999999999999999999998885 478999998754

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=2.3e-10  Score=77.17  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.++++|+++| |++||+|++||++++.++++.++..+++..+ ..+.|+|.|...
T Consensus        36 ~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~   96 (100)
T 1whd_A           36 SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRVSG   96 (100)
T ss_dssp             SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCS-SEEEEEEEECCS
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            578999999999999999 9999999999999999999999999999875 579999988654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.08  E-value=3.8e-10  Score=77.73  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++.. ...+.|+|.|..
T Consensus        36 ~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~   97 (114)
T 2edz_A           36 DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS-GNSVTLLVLDGD   97 (114)
T ss_dssp             TCCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred             CCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence            34689999999999999999 999999999999999999999999999886 479999999854

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.07  E-value=5.5e-10  Score=77.97  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++||++++.+++++++.++|+... ...+.|+|.|...
T Consensus        44 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA  108 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             CCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCc
Confidence            457899999999999999999999999999999999999999999999874 4689999998664

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.07  E-value=1.2e-09  Score=74.09  Aligned_cols=62  Identities=32%  Similarity=0.399  Sum_probs=54.5

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...+++|..|.+++||+ +| |++||+|++|||+++.++++.+++..++..+ ..+.|+|.|...
T Consensus        37 ~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   98 (107)
T 2h2b_A           37 GETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKSG-KNAKITIRRKKG   98 (107)
T ss_dssp             CCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEESC
T ss_pred             CCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCCC-CEEEEEEEECCC
Confidence            45699999999999999 88 9999999999999999999988887777654 689999988654

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=1.1e-09  Score=75.69  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIP   70 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~   70 (144)
                      +.|++|..|.++++|+++| |++||+|++|||+++.++++.+++.+++.. ...+.|+|.|.....
T Consensus        41 ~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~r~~~~~  104 (117)
T 1uit_A           41 KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ-CDTITILAQYNPHVH  104 (117)
T ss_dssp             TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC-CSEEEEEECCCSCCC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCchh
Confidence            4589999999999999999 999999999999999999988887666654 478999999876543

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.07  E-value=7e-10  Score=77.98  Aligned_cols=62  Identities=26%  Similarity=0.287  Sum_probs=55.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~   67 (144)
                      +.|++|..|.+++||+++| |++||+|++|||+++.++++.++..+|+. .....+.|+|.|..
T Consensus        50 ~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           50 DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             TSCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            4689999999999999999 99999999999999999999999998885 33468999998864

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-10  Score=81.35  Aligned_cols=61  Identities=20%  Similarity=0.347  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.+++||+++| |++||+|++||++++.++++.+++.+|+.. ...|.|+|.|...
T Consensus        61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~  121 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence            579999999999999999 999999999999999999999999999987 4799999988654

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.06  E-value=6.1e-10  Score=83.33  Aligned_cols=63  Identities=29%  Similarity=0.469  Sum_probs=57.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|+.+
T Consensus       135 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~~~  197 (206)
T 3r0h_A          135 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSMEVTRPKP  197 (206)
T ss_dssp             SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEECC
T ss_pred             CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            457999999999999999999999999999999999999999999999875 799999998654

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=6.4e-10  Score=76.59  Aligned_cols=60  Identities=25%  Similarity=0.272  Sum_probs=55.1

Q ss_pred             cEEEEEEcCCChhhh-cCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           7 VIVIRSLVPGGVAQL-DARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         7 gi~Is~V~~gg~A~~-~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      +++|..|.++++|++ +| |++||+|++||++++.++++.++.++|+.. ...+.|+|.|...
T Consensus        44 ~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~  104 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIKDA-GLSVTLRIIPQEE  104 (114)
T ss_dssp             SCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHHHT-TTEEEEEECCCSC
T ss_pred             CeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence            679999999999999 88 999999999999999999999999999985 4799999998764

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=3.6e-10  Score=80.15  Aligned_cols=62  Identities=24%  Similarity=0.366  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~   66 (144)
                      ..+++|..|.+++||+++|+|++||+|++|||.++.+.+|.+++++|+... ...|.|+|.|.
T Consensus        48 ~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            357899999999999999999999999999999999889999999999843 46899999997

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.04  E-value=1.3e-09  Score=74.57  Aligned_cols=66  Identities=26%  Similarity=0.381  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCc-CCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARL-IPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPD   71 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL-~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~   71 (144)
                      ..+++|..|.+++||+++| | +.||+|++|||+++.++++.++..+++......+.|+|.|......
T Consensus        25 ~~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~   91 (112)
T 1qau_A           25 KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFT   91 (112)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSE
T ss_pred             CCCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccc
Confidence            3589999999999999999 7 9999999999999999999999999988655689999999775433

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7e-10  Score=75.20  Aligned_cols=62  Identities=21%  Similarity=0.342  Sum_probs=56.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|...
T Consensus        31 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~~   92 (106)
T 2eei_A           31 KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRVMFLLVDKET   92 (106)
T ss_dssp             CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHC-SEEEEEECCTTT
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcCch
Confidence            4689999999999999999 9999999999999999999999999998764 689999988654

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.03  E-value=4.2e-10  Score=76.23  Aligned_cols=61  Identities=21%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.+++||+++| |++||+|++||++++.++++.++..+|+.. ...+.|+|.|...
T Consensus        29 ~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~   89 (103)
T 1v5l_A           29 QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET   89 (103)
T ss_dssp             EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence            479999999999999999 999999999999999999999999999987 5799999998765

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=1.5e-09  Score=76.11  Aligned_cols=66  Identities=29%  Similarity=0.337  Sum_probs=57.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC   74 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~   74 (144)
                      .|++|..|.++++|+++| |++||+|++|||+++.++++.++++.++..  ..+.|+|.|........+
T Consensus        46 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~R~g~~~~~~v  111 (128)
T 1uf1_A           46 LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS--RHLILTVKDVGRLPHART  111 (128)
T ss_dssp             CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC--SEEEEEEECCSCCSSCSC
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEECCccccccc
Confidence            489999999999999999 999999999999999999998888888875  489999999776544433

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1.3e-09  Score=72.65  Aligned_cols=55  Identities=24%  Similarity=0.430  Sum_probs=51.2

Q ss_pred             EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +|..|.++++|+++| |++||+|++|||+++.++++.++.++|+..+ ..+.|+|.+
T Consensus        34 ~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g-~~v~l~v~p   88 (90)
T 1y7n_A           34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTMP   88 (90)
T ss_dssp             EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEEEC
T ss_pred             EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEE
Confidence            899999999999999 9999999999999999999999999999774 688998874

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=2.2e-09  Score=71.99  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=53.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++  |+++| |++||+|++||++++.+++|.+++++|+..+ ...|.|+|.|...
T Consensus        32 ~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           32 TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            47899999984  67788 9999999999999999999999999999864 4799999999764

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.01  E-value=1.4e-09  Score=80.77  Aligned_cols=59  Identities=27%  Similarity=0.403  Sum_probs=55.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ...|++|..|.++++|++ | |++||+|++|||+++.+++|.+++.+++..+ ..|.|+|.|
T Consensus        22 ~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r   80 (195)
T 2qbw_A           22 DDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVR   80 (195)
T ss_dssp             TCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEE
T ss_pred             CCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEE
Confidence            457999999999999999 8 9999999999999999999999999999986 699999988

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.01  E-value=1.6e-09  Score=74.89  Aligned_cols=61  Identities=43%  Similarity=0.463  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~   98 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP   98 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            58999999999999999999999999999999999999988888888764 68999998754

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.01  E-value=1.7e-09  Score=79.68  Aligned_cols=63  Identities=40%  Similarity=0.586  Sum_probs=58.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..+
T Consensus        34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~r~~~   96 (196)
T 3gsl_A           34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRKP   96 (196)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEecCC
Confidence            568999999999999999999999999999999999999999999998875 789999988664

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.00  E-value=7.9e-10  Score=76.42  Aligned_cols=64  Identities=22%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..+++|..|.++++|+++| |+.||+|++|||+++.++++.++.++|+..+...+.|+|.|..+.
T Consensus        35 ~~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~~~   98 (111)
T 1vae_A           35 NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDS   98 (111)
T ss_dssp             SSSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEECC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecCCC
Confidence            3578899999999999999 999999999999999988999999999988655799999886543

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.00  E-value=2.5e-09  Score=74.02  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.++++|+++|+|++||+|++|||+++.+.++.++.++++..+ ..+.|+|.+..
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~  110 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKLQ  110 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecc
Confidence            47999999999999999999999999999999998889999999999875 57889887643

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.99  E-value=2.4e-09  Score=70.16  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      ..+++|..+ +++||+ +| |++||+|++|||+++.++++.+++.+++.. ....+.|+|.|..
T Consensus        26 ~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           26 GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred             CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            458899887 999999 88 999999999999999999999999999853 3468999998854

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=8.6e-10  Score=74.22  Aligned_cols=61  Identities=30%  Similarity=0.421  Sum_probs=53.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++| |++||+|++||++++.++++.+++..++..  ..+.|+|.|...
T Consensus        34 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~--~~v~l~v~R~g~   94 (101)
T 1uez_A           34 GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS--KKLVLSVYSAGR   94 (101)
T ss_dssp             TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS--SSCCEEECCCCC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC--CeEEEEEEECCc
Confidence            4589999999999999999 999999999999999999997777766554  478899988654

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=9.9e-10  Score=74.05  Aligned_cols=60  Identities=27%  Similarity=0.404  Sum_probs=53.7

Q ss_pred             CcEEEEEEcCCChhhhc-CCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLD-ARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~-GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+++|..|.+++||+++ | |++||+|++||++++.++ +.+++.+++..+ ..+.|+|.|...
T Consensus        35 ~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~~-~~v~l~v~R~~~   95 (100)
T 2edp_A           35 EPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGSF-RILKLIVRRRNS   95 (100)
T ss_dssp             EEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTCC-SSCEEEEEECCC
T ss_pred             CCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhCC-CeEEEEEEeCCC
Confidence            47899999999999999 6 999999999999999887 788999999874 689999998753

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.99  E-value=1.1e-09  Score=71.99  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=53.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.+.++.++..+++.. ....+.|+|.|..
T Consensus        27 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           27 IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            3589999999999999999 999999999999999777889999888853 2368999998753

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.99  E-value=1.4e-09  Score=73.69  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=52.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV   63 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V   63 (144)
                      ..+++|..|.++++|+++| |++||+|++|||+++.++++.+++++|+..+ ..|.|+|
T Consensus        47 ~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v  103 (104)
T 2z17_A           47 EMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSG-NLLTIET  103 (104)
T ss_dssp             SCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHTT-TEEEEEC
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEE
Confidence            4589999999999999999 9999999999999999999999999999986 5788775

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=6.3e-10  Score=74.56  Aligned_cols=60  Identities=27%  Similarity=0.460  Sum_probs=54.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.++++|+ +| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.|..
T Consensus        30 ~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~   89 (96)
T 2edv_A           30 SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAE-DSLSITVVRCT   89 (96)
T ss_dssp             SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCS-SCEEEEEEECC
T ss_pred             CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            4589999999999995 77 9999999999999999999999999999864 78999999976

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.97  E-value=2.5e-09  Score=74.75  Aligned_cols=62  Identities=21%  Similarity=0.252  Sum_probs=55.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.++++|+++| |+.||+|++|||+++.++++.++..+|+......+.|+|.|..
T Consensus        32 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g   93 (128)
T 2kjd_A           32 KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET   93 (128)
T ss_dssp             SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHH
T ss_pred             CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCC
Confidence            3489999999999999999 9999999999999999999999999999886457789998754

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.97  E-value=1.9e-09  Score=80.72  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++| |++||+|++|||.++.++++.+++.+++. + ..+.|+|.|...
T Consensus       109 ~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~-~~v~l~v~r~g~  169 (192)
T 3k1r_A          109 GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-E-KTVSIKVRHIGL  169 (192)
T ss_dssp             TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-S-SEEEEEEEECCE
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-C-CeEEEEEEECCc
Confidence            3589999999999999999 99999999999999999999999999988 4 799999998764

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.97  E-value=3.7e-09  Score=83.51  Aligned_cols=63  Identities=38%  Similarity=0.440  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCChhhh-cCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQL-DARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~-~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.++++|++ +| |++||+|++|||+++.+++|.+++.+|+..+ ..|.|+|.|....
T Consensus       102 ~~gi~V~~V~~gspA~~~aG-L~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g-~~V~L~V~R~~~~  165 (263)
T 1z87_A          102 KMPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKTG-KEVVLEVKYMKEV  165 (263)
T ss_dssp             TEEEEEEECCTTSHHHHCTT-CCSSCEEEEESSCBCTTSCHHHHHHHHHHCC-SCCCEEEECCSSS
T ss_pred             CCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCcCHHHHHHHHhcCC-CeEEEEEEeCccc
Confidence            36899999999999999 46 9999999999999999999999999999985 6899999996653

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=1.1e-09  Score=74.80  Aligned_cols=61  Identities=39%  Similarity=0.456  Sum_probs=55.8

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.++++|+++|+|++||+|++||++++.++++.++..+++... ..+.|+|.|..
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~   99 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQYRP   99 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC-SEEEEEEECCH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECc
Confidence            68999999999999999999999999999999999999999999998764 78999998754

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.97  E-value=3.1e-09  Score=79.40  Aligned_cols=64  Identities=23%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCC--CCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNN--ASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~--~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      .|++|..|.++++|+++|+|+.||+|++|||+++.+  ++|.+++.+++..+...+.|+|.|....
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  110 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPP  110 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSC
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccC
Confidence            589999999999999998899999999999999999  9999999999988644499999987653

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.96  E-value=3.6e-09  Score=73.78  Aligned_cols=60  Identities=20%  Similarity=0.217  Sum_probs=52.2

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      .|.+|.+|.+  ++..+| |++||+|++|||+++.+++|.+++++|+.++ ...|.|+|.|...
T Consensus        34 ~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           34 TGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP   94 (113)
T ss_dssp             TEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred             CCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence            4678999988  466666 9999999999999999999999999999875 3589999999775

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=3.6e-09  Score=73.94  Aligned_cols=62  Identities=26%  Similarity=0.404  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      .|++|..|.++++|+++|+|++||+|++|||+++.+  +.++..+|+..+...|.|+|.|....
T Consensus        48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPELQ  109 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEECSSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            689999999999999999999999999999999974  68899999886546899999997754

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.95  E-value=1.8e-09  Score=75.60  Aligned_cols=63  Identities=27%  Similarity=0.413  Sum_probs=57.4

Q ss_pred             CcEEEEEEcCCChhhhcCCc-CCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARL-IPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL-~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      .+++|..|.++++|+++| | +.||+|++|||+++.++++.++.++|+......+.|+|.|....
T Consensus        33 ~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG   96 (127)
T ss_dssp             SCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCS
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCce
Confidence            589999999999999999 7 99999999999999999999999999987556899999997653

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.94  E-value=4.6e-09  Score=70.98  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..+++|..|.+++||+++| |+.||+|++|||+++.+++++++.+++++   ..+.|+|..
T Consensus        34 ~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~---~~l~ltV~~   90 (94)
T 3kzd_A           34 IRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRT   90 (94)
T ss_dssp             SCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS---SEEEEEEEE
T ss_pred             cCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC---CeEEEEEEe
Confidence            4589999999999999999 99999999999999999999999999884   368888765

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2.7e-09  Score=74.16  Aligned_cols=58  Identities=17%  Similarity=0.183  Sum_probs=52.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.++++|+++| |++||+|++|||+++.++++.++.++++.   ..+.|+|.|..
T Consensus        44 ~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p  101 (114)
T 2d8i_A           44 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP  101 (114)
T ss_dssp             EEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence            479999999999999999 99999999999999999989999998875   37999998854

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.91  E-value=4.5e-09  Score=73.37  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=56.8

Q ss_pred             CCcEEEEEEcC--CChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVP--GGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~--gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+  +++|+++| |+.||+|++|||+.+.++++.++..+|+.. ...+.|+|.|...
T Consensus        43 ~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~  106 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV  106 (118)
T ss_dssp             CCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred             CCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence            46899999999  99999999 999999999999999999999999999987 5789999998764

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.89  E-value=8.8e-10  Score=73.63  Aligned_cols=64  Identities=14%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCCCCCcc
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPIPDSSC   74 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~~~~~~   74 (144)
                      |++|..|.+++||++ | |++||+|++|||+++.++  .++..+|+.. +...+.|+|.|........+
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v   66 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKEKRVTL   66 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCEECCCE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEEEEEEE
Confidence            688999999999999 8 999999999999999754  7888888876 34689999999775444333

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.89  E-value=6e-09  Score=71.34  Aligned_cols=59  Identities=22%  Similarity=0.353  Sum_probs=52.4

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC--CCCeEEEEEEc
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA--PRGIVKIGVAK   65 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~--~~~~V~L~V~r   65 (144)
                      .+.+|..|.+++||+++| |++||+|++|||.++...+++++..+++..  ..+++.|.|+.
T Consensus        39 ~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           39 KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            467899999999999999 999999999999999878899999999873  34689988874

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.87  E-value=1.1e-08  Score=76.29  Aligned_cols=62  Identities=29%  Similarity=0.426  Sum_probs=57.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..+++|..|.++++|+++|+|++||+|++||++++.+++++++.++|+.. ...+.|+|.|..
T Consensus       134 ~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (200)
T 2qt5_A          134 SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC-GQEATLLIEYDV  195 (200)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-CSEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            46899999999999999999999999999999999999999999999984 579999998864

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.86  E-value=6.6e-09  Score=70.07  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      ...|++|..|.+++||+. | |++||+|++|||+++.++  .++..++... ....+.|+|.|....
T Consensus         5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~   67 (100)
T 3i18_A            5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKN   67 (100)
T ss_dssp             CCCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             eCCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            457999999999999995 8 999999999999999654  7788888864 346899999987653

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.85  E-value=6.8e-09  Score=71.21  Aligned_cols=59  Identities=27%  Similarity=0.416  Sum_probs=53.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|++|..|.++++|+++| |++||+|++||++++.++.+.+++.+++..  ..+.|+|.|.
T Consensus        40 ~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~r~   98 (114)
T 1x5n_A           40 KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAA   98 (114)
T ss_dssp             SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSS
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEcC
Confidence            3589999999999999999 999999999999999999988888888875  4789999886

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.84  E-value=9.5e-09  Score=85.04  Aligned_cols=62  Identities=26%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~   67 (144)
                      +.|++|..|.+++||+++| |++||+|++|||+++.++++++++.+|+. .....|.|+|.|..
T Consensus        30 ~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           30 DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence            4689999999999999999 99999999999999999999999999996 34468999998854

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.82  E-value=1.6e-08  Score=75.41  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++|+|+.||+|++|||+++.++++.++..+|+... ...+.|+|.|...
T Consensus        35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA   99 (196)
T ss_dssp             SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence            467999999999999999999999999999999999889999999999884 3689999988764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.82  E-value=1.2e-08  Score=86.42  Aligned_cols=62  Identities=26%  Similarity=0.279  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+|+.. ....|.|+|.|..
T Consensus        22 ~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           22 DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             TTEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             cCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            4689999999999999999 999999999999999999999999999983 3468999998854

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.81  E-value=1.8e-08  Score=75.14  Aligned_cols=62  Identities=27%  Similarity=0.335  Sum_probs=56.0

Q ss_pred             CCcEEEEEEcCCChhhhc-CCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLD-ARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~-GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++ | |+.||+|++|||+++.+++|.++..+++..+ ..|.|+|.|..+
T Consensus        32 ~~~~~V~~v~~~spA~~agg-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-~~v~l~v~R~~~   94 (200)
T 2qt5_A           32 DGKPRVSNLRQGGIAARSDQ-LDVGDYIKAVNGINLAKFRHDEIISLLKNVG-ERVVLEVEYELP   94 (200)
T ss_dssp             SSCSEEEEECTTSHHHHTTS-CCTTCEEEEETTEECTTSCHHHHHHHHHTCC-SEEEEEEEEECC
T ss_pred             CCCeEEEEECCCChHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEeccCC
Confidence            357899999999999999 6 9999999999999999999999999998875 689999988654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.80  E-value=2.8e-08  Score=72.30  Aligned_cols=61  Identities=23%  Similarity=0.253  Sum_probs=53.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|++|..|.+++||+++| |+.||+|++|||+++.+++++....+++......+.|+|.+.
T Consensus        26 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~   86 (166)
T 1w9e_A           26 DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR   86 (166)
T ss_dssp             TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence            3589999999999999999 999999999999999999886777888877656899999554

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.80  E-value=5.1e-09  Score=70.02  Aligned_cols=60  Identities=18%  Similarity=0.285  Sum_probs=51.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||++ | |+.||+|++|||.++.++  .++..+++.. ....+.|+|.|...
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   64 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRK   64 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            46899999999999998 8 999999999999999754  7788888875 34689999999764

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.79  E-value=1.6e-08  Score=75.41  Aligned_cols=62  Identities=31%  Similarity=0.488  Sum_probs=57.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++.++.++|+.. ...+.|+|.|..
T Consensus       134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (196)
T 1p1d_A          134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE  195 (196)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred             CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            45899999999999999999999999999999999998899999999988 579999998864

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.21  E-value=1.1e-09  Score=75.76  Aligned_cols=57  Identities=30%  Similarity=0.443  Sum_probs=50.8

Q ss_pred             CcEEEEEEcCCChhhh-cCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           6 TVIVIRSLVPGGVAQL-DARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~-~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      .|++|..|.+++||++ +| |++||+|++|||+++.++++.+++.+++..+ ..+.|+|.
T Consensus        53 ~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~-~~v~l~V~  110 (112)
T 2lob_A           53 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVV  110 (112)
Confidence            4799999999999999 77 9999999999999999999999999998775 46777764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.71  E-value=2.9e-08  Score=87.57  Aligned_cols=63  Identities=40%  Similarity=0.586  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|+.||+|++|||+++.+++|.+++.+++..+ ..|.|+|.|...
T Consensus        88 ~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~~~  150 (721)
T 2xkx_A           88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRKP  150 (721)
T ss_pred             CCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc-cccceEEEeccc
Confidence            578999999999999999999999999999999999999999999999875 689999988664

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.70  E-value=1.6e-08  Score=66.50  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=50.1

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      +++|..|.++++|+++| |+.||+|++|||+.+.++  .++...++......+.|+|.|...
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCe
Confidence            46788999999999999 999999999999999754  778888887654689999998764

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.69  E-value=8.2e-08  Score=65.61  Aligned_cols=59  Identities=19%  Similarity=0.371  Sum_probs=51.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |++||.|++|||+++.+  ..++..+++. . ..+.|+|.|...
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~-~~v~l~v~R~g~   92 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-Q-SQLAVQIRRGRE   92 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-C-SSEEEEEEETTE
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-C-CeEEEEEEECCE
Confidence            5789999999999999999 99999999999999975  5778888887 3 589999998664

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.65  E-value=1e-07  Score=63.75  Aligned_cols=57  Identities=19%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      +|..|.++++|+++| |+.||+|++|||+.+.++  .++...|..... ..+.|+|.|...
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCC
Confidence            688999999999999 999999999999999755  778887776543 589999999764

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.64  E-value=1.1e-07  Score=67.39  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+ +| |+.||.|++|||+++.++  .+...++... ....+.|+|.|...
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~  116 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGK  116 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4689999999999999 99 999999999999999765  6777778765 34689999998764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.63  E-value=8.1e-08  Score=84.75  Aligned_cols=63  Identities=41%  Similarity=0.441  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++|+|++||+|++|||+++.++++++++.+|+..+ ..|.|+|.|...
T Consensus       330 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~-~~v~L~v~r~~~  392 (721)
T 2xkx_A          330 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKPE  392 (721)
T ss_pred             CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcC-CeEEEEEEeCch
Confidence            358999999999999999999999999999999999999999999999875 689999987543

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.61  E-value=2.6e-08  Score=82.22  Aligned_cols=64  Identities=25%  Similarity=0.456  Sum_probs=57.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~~   69 (144)
                      .+++|..|.+++||+++|+|+.||+|++|||+++.++++.+++.+++..+ ...+.|+|.|....
T Consensus       232 ~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~  296 (388)
T 3suz_A          232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPV  296 (388)
T ss_dssp             CCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSC
T ss_pred             CCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccccccccc
Confidence            46899999999999999999999999999999999999999999998873 34699999886543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.58  E-value=1.2e-07  Score=62.25  Aligned_cols=59  Identities=12%  Similarity=0.037  Sum_probs=48.9

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      .|+.|..+.++++|+++| |++||.|++|||+++.++  .+...+++.. ....+.|+|.|..
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            377888888889999999 999999999999999765  6677777754 2358999998865

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.58  E-value=2.3e-07  Score=63.37  Aligned_cols=59  Identities=17%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++| |++||+|++|||+++.++  .++...++.  ...+.|+|.|...
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~--g~~v~l~v~R~g~   92 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDS--SELQEAVLT--ESPLLLEVRRGND   92 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHH--CSSEEEEEEETTE
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCE
Confidence            5689999999999999999 999999999999999754  677777754  2578999988764

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.56  E-value=4.7e-08  Score=74.99  Aligned_cols=60  Identities=22%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeE-EEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV-KIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V-~L~V~r~~   67 (144)
                      .|++|..|.++++|+++| |+.||+|++|||+.+.++++.+++.+|+..+ ..| .|+|.|..
T Consensus        33 ~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g-~~v~~l~V~R~g   93 (216)
T 2krg_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRET   93 (216)
T ss_dssp             CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHC-SEEEEEECCHHH
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcC-CeEEEEEEEECC
Confidence            489999999999999999 9999999999999999889999999998873 677 88887643

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.49  E-value=5.1e-07  Score=74.14  Aligned_cols=63  Identities=24%  Similarity=0.361  Sum_probs=56.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+++..++..+|+......|.|+|.|...
T Consensus        98 ~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           98 GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            4689999999999999999 99999999999999999988889999987655689999988654

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.47  E-value=5.2e-07  Score=61.13  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=47.0

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPL   67 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~   67 (144)
                      |+.|....++++|+++| |++||.|++|||+++.++  .++..++.. .....+.|+|.|..
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECC
Confidence            66788888888889999 999999999999999877  445566664 23368999998865

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.46  E-value=2.3e-07  Score=70.14  Aligned_cols=58  Identities=16%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCC-CCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIP-GDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~-GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .|++|..|.+++||+++| |++ ||.|++||+. +.++  +++.++++..+...+.|+|.|..
T Consensus       112 ~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETT
T ss_pred             cceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECC
Confidence            589999999999999999 999 9999999997 7554  66778888875578999998865

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.45  E-value=3.2e-07  Score=73.36  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++  .++..+|+. .+...+.|+|.|....
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  305 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ  305 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4689999999999999999 999999999999999764  778888886 3446899999997653

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.41  E-value=7e-07  Score=67.48  Aligned_cols=62  Identities=18%  Similarity=0.111  Sum_probs=51.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCC-CEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPG-DRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~G-D~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |+.| |+|++|||+.+.++.... ..+++......+.|+|.|...
T Consensus        15 ~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~-~~~~~~~~g~~v~l~v~R~~~   77 (209)
T 3rle_A           15 TEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTL-KDLLKANVEKPVKMLIYSSKT   77 (209)
T ss_dssp             SEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHH-HHHHHHTTTSCEEEEEEETTT
T ss_pred             CCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHH-HHHHhcCCCCEEEEEEEecCC
Confidence            5689999999999999999 9999 999999999998876432 255555555689999988643

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.38  E-value=1e-06  Score=71.57  Aligned_cols=62  Identities=19%  Similarity=0.302  Sum_probs=53.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.+++||+++| |++||.|++|||+.+.+  ..+...+|+.. +...+.|+|.|....
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP  324 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4689999999999999999 99999999999999975  47788888764 446899999997753

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.37  E-value=7.3e-07  Score=74.42  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=53.6

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      .|++|..|.++++|+++| |++||+|++|||+++.+  ++++.++++..+ +.+.|+|.|....
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~--~~~~~~~l~~~~-~~v~l~v~R~g~~  422 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKP-AIIALQIVRGNES  422 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCC-CeEEEEEEECCEE
Confidence            589999999999999999 99999999999999975  488999999865 5899999997653

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.31  E-value=2.4e-06  Score=59.96  Aligned_cols=59  Identities=27%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.++++|+++  |+.||+|++|||+.+.++  .++..+++. .....+.|+| |...
T Consensus        24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            468999999999999988  999999999999999755  677778874 3346899999 8664

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.29  E-value=1.3e-06  Score=69.78  Aligned_cols=61  Identities=23%  Similarity=0.279  Sum_probs=52.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEc-CCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAK-PLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r-~~~   68 (144)
                      ..|++|..|.+++||+++| |+.||+|++|||+++.++  .+...++... ....+.|+|.| ...
T Consensus       241 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            4689999999999999999 999999999999999765  6777778653 34689999999 654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.28  E-value=1.2e-06  Score=70.42  Aligned_cols=59  Identities=20%  Similarity=0.392  Sum_probs=51.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |+.||.|++|||+.+.++  .+..++++..  ..+.|+|.|...
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~--~~l~~~l~~~--~~v~l~v~R~g~  313 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRTQ--SQLAVQIRRGRE  313 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHTTC--SSEEEEEEETTE
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHhCC--CeEEEEEEECCE
Confidence            4689999999999999999 999999999999999754  7788888763  589999999764

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.27  E-value=1.3e-06  Score=70.81  Aligned_cols=62  Identities=23%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CcEEEEEEcCCChhhhcCCcCC-----------CCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIP-----------GDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPIP   70 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~-----------GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~~   70 (144)
                      .|++|..|.+++||+++| |++           ||+|++|||+++.++  .+...+|... +...|.|+|.|.....
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~  324 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKE  324 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEE
Confidence            689999999999999999 999           999999999999877  6788888654 3468999999977543

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.20  E-value=5.2e-06  Score=69.67  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      .|++|..|.+++||+++| |+.||+|++|||+++.++  .++..++... ....+.|+|.|....
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~  343 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKP  343 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            689999999999999999 999999999999999765  6677777753 346899999997643

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.19  E-value=2.8e-06  Score=71.32  Aligned_cols=59  Identities=10%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |++||+|++||++++.++  +++.++++.. ...+.|+|.|...
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~~--~~~~~~l~~~-~~~v~l~v~R~g~  444 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDV--KSLQTIAQEK-KKELLVQVLRGPG  444 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHTTSS-CSCEEEEEEETTE
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhcC-CCeEEEEEEECCE
Confidence            588999999999999999 999999999999999754  7888999885 4789999988653

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.16  E-value=6.1e-06  Score=68.81  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.+++||+++| |+.||+|++|||+.+.++  .++..++... ....+.|+|.|....
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP  324 (436)
T ss_pred             CcceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4689999999999999999 999999999999999766  5566666643 236899999987654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.13  E-value=9.9e-06  Score=58.65  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      +|..+.++++|+++| |+.||+|++||+.++.++.+..+.-.+++.+ ..+.+.|.
T Consensus       110 ~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g-~~~~l~v~  163 (166)
T 1w9e_A          110 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITIM  163 (166)
T ss_dssp             EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEE
T ss_pred             EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCC-CEEEEEEE
Confidence            789999999999999 9999999999999999999998887777765 57777664

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.12  E-value=3.3e-07  Score=75.57  Aligned_cols=56  Identities=25%  Similarity=0.420  Sum_probs=0.0

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      .+|..|.++++|+++| |++||+|++|||+++.+++|++++++|+..+ ..+.|+|..
T Consensus       317 g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~-~~v~L~V~p  372 (388)
T 3suz_A          317 GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSV-GEIHMKTMP  372 (388)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEe
Confidence            3788999999999999 9999999999999999999999999999875 678888854

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.07  E-value=4.8e-07  Score=72.73  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcccc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQ   76 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~~~   76 (144)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++  .++..+++.  ...+.|+|.|........+++
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p  319 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA--NDVSDVIKR--ESTLNMVVRRGNEDIMITVIP  319 (332)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEE
Confidence            3589999999999999999 999999999999999654  667777775  357999999977655444444

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.03  E-value=4.1e-06  Score=69.54  Aligned_cols=57  Identities=25%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .++|..|.+++||+++| |+.||+|++|||+++.++.   +..+++. +...|.|+|.|...
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~  147 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCc
Confidence            47899999999999999 9999999999999998874   5567776 55689999987543

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.02  E-value=5.4e-06  Score=71.94  Aligned_cols=60  Identities=13%  Similarity=0.199  Sum_probs=49.5

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      .|++|..|.+++||+++| |++||+|++|||..+. .  .+...+|+.. +...|.|+|.|....
T Consensus       496 ~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~-~--~~l~~~l~~~~~g~~v~l~v~R~g~~  556 (597)
T 4fgm_A          496 QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT-E--QSVKRILERYIPGDTVTIHAFRRDEL  556 (597)
T ss_dssp             TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC-T--TTHHHHHTTCCTTCEEEEEEEETTEE
T ss_pred             CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC-H--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            478999999999999999 9999999999999994 2  4456667653 346899999997653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.88  E-value=5.6e-06  Score=69.38  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.++++|+++| |+.||+|++|||..+.++  .+...++... ....+.|+|.|....
T Consensus       285 ~~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  347 (448)
T 1ky9_A          285 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQ  347 (448)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CCceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            3589999999999999999 999999999999999877  5677777653 336899999987643

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.71  E-value=4.9e-06  Score=69.74  Aligned_cols=59  Identities=17%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .|++|..|.++++|+++| |+.||+|++||++++.+  ++++.++|+..+ ..+.|+|.|...
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~--~~~l~~~l~~~~-~~v~l~v~R~g~  441 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKP-SVLALNIQRGDS  441 (448)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHcCC-CeEEEEEEECCE
Confidence            478999999999999999 99999999999999975  477888888765 488899988664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.47  E-value=0.00026  Score=63.59  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=51.3

Q ss_pred             CcEEEEEEcCC--------ChhhhcC-CcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPG--------GVAQLDA-RLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~g--------g~A~~~G-rL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+++|..|.++        +||+++| .|+ ||+|++|||+++..+.  ++..+|+......|.|+|.|..
T Consensus       748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~r~~  815 (1045)
T 1k32_A          748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG  815 (1045)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEECCC
Confidence            46889999998        9999998 489 9999999999998875  6788888876679999999865

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.19  E-value=0.00085  Score=57.61  Aligned_cols=59  Identities=8%  Similarity=0.153  Sum_probs=51.7

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +..+++|+.|.++++|...+ ++.||.|++||++++.+.  .+..++|+.++++.+.|.+..
T Consensus       413 ~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~~  471 (539)
T 4fln_A          413 GEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFED  471 (539)
T ss_dssp             TCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEETT
T ss_pred             CceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEECC
Confidence            45689999999999999999 999999999999999776  778999999986677777644

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.97  E-value=0.0011  Score=56.89  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCH--------HHHHHHHHcC-CCCeEEEEEEcCCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASL--------DQAVQALKGA-PRGIVKIGVAKPLPIP   70 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~--------~e~v~ll~~~-~~~~V~L~V~r~~~~~   70 (144)
                      ..|++|..|.+++||++ + |+.||.|++|||+.+.....        .....++... +...|.|+|.|.....
T Consensus       276 ~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~  348 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHK  348 (539)
T ss_dssp             SBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             cCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            46999999999999986 4 99999999999999964321        1123344443 3468999999977543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	5e-12
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-11
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-11
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	3e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-11
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	9e-11
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-10
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-10
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-10
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	3e-10
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	3e-10
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	4e-10
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	5e-10
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	8e-10
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	8e-10
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	9e-10
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	1e-09
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	1e-09
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-09
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-09
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-09
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-09
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-09
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-09
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-09
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	5e-09
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	5e-09
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	7e-09
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	8e-09
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	9e-09
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	9e-09
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	1e-08
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-08
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-08
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-08
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-08
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-08
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-08
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-08
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	6e-08
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	7e-08
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-08
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	8e-08
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-07
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-07
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-07
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-07
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	3e-07
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-07
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-07
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-07
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-06
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-06
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-06
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	4e-06
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	9e-06
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-05
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	3e-05
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	1e-04
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	8e-04
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	0.001
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	0.001

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (136), Expect = 5e-12
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
             ET IVI  ++PGG A  D  L   DR++ VN T + +     AVQ L+ +   I  I 
Sbjct: 36  NGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIV 92

Query: 63  VAKPLPIPDS 72
           V +P  +  +
Sbjct: 93  VKRPRKVQVA 102

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
            +  + ++S++P G A  D ++  GD ++ +NE  +   +    V+  +  P G  V + 
Sbjct: 42  PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV 101

Query: 63  VAKPLPIPDSSCSQVSHAGPGLG 85
           + +  P+P       + +GP  G
Sbjct: 102 LCRGYPLPFDPEDPAN-SGPSSG 123

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (130), Expect = 3e-11
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I+I SL  GG+A+    +  GDR+L++N + L    L +A+  L+ A    V + + K  
Sbjct: 30 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQT 88

Query: 68 PIPDSS 73
              +S
Sbjct: 89 DAQPAS 94

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (130), Expect = 3e-11
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA---PRGI 58
               ++ I  ++PGG    D RL PGD+L+S+N+  +   S ++A   +  A       
Sbjct: 30 RNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESP 89

Query: 59 VKIGVAK 65
           +I   +
Sbjct: 90 WEIAFIR 96

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 3e-11
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           +  I ++++  GG AQ D R+   D+++ V+   L   + + A   L+    G V+  +
Sbjct: 31 EKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVI 89

Query: 64 AKPLP 68
           +  P
Sbjct: 90 GREKP 94

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 9e-11
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
                 I  +  G +A +   L  GD +L  N   L  A+ ++    +  +     V+I 
Sbjct: 45  GRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEII 104

Query: 63  VAKP 66
           V++P
Sbjct: 105 VSRP 108

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 1e-10
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
           ++  + P   A+    L  GDR+LS+N     + ++++A Q L+ A    
Sbjct: 40 PLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAH 90

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (123), Expect = 3e-10
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           ++  I I  ++PGG A  D RL   D +L VNE D+   +   AV+ALK A   IV++ 
Sbjct: 28 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLY 86

Query: 63 VAKPLP 68
          V +  P
Sbjct: 87 VMRRKP 92

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 3e-10
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKP 66
           I+I +++  G A  D RL PGD L+ V+   +   +    +  +  A R   V + V + 
Sbjct: 36  ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95

Query: 67  LPIPDSS 73
           +    SS
Sbjct: 96  VLSGPSS 102

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 3e-10
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
          P +  I I  ++ GG AQ D RL  GDRLL+VN T+L +   ++AV +LK     +V + 
Sbjct: 28 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLK 86

Query: 63 VAKP 66
          VAKP
Sbjct: 87 VAKP 90

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 51.4 bits (123), Expect = 3e-10
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP--RGIV 59
             +  I I S++ GG    D R+ PGD LL VN+ +  N S D AV+ L+      G +
Sbjct: 25 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPI 84

Query: 60 KIGVAKP 66
           + VAK 
Sbjct: 85 VLTVAKL 91

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 4e-10
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
          I I+ ++    A  +  L PGDR++ V+  DL +AS +QAV+A++ A 
Sbjct: 38 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG 85

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 5e-10
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          ++I +++ GG A+   +L  GD+++S+N T L    L      +KG      
Sbjct: 28 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSR 79

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.7 bits (121), Expect = 8e-10
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
                +VI  +  G VA     L  GD+LL+++   L++ S++ AVQ L+     +VK+
Sbjct: 34 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKL 92

Query: 62 GVAK 65
           + K
Sbjct: 93 KIRK 96

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 8e-10
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I +  + P G+A  +  +  G+ +LS+N   L   +   A+  L+ A      + V + L
Sbjct: 37 ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 96

Query: 68 P 68
           
Sbjct: 97 T 97

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 9e-10
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +  E    I  ++PGG A+   +L+ G ++L  N   L + + ++    +     G  +I
Sbjct: 45  HSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEI 103

Query: 62  GVAKPLPIPDSS 73
            V   L +   S
Sbjct: 104 CVRLDLNMSGPS 115

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 1e-09
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           P++  I +  + P G A     L PGD+++  N     N    QAV  LK      V++ 
Sbjct: 40  PDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELI 96

Query: 63  VAKPLP 68
           + + + 
Sbjct: 97  IVREVS 102

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.0 bits (119), Expect = 1e-09
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
           +  I I  LVPGG+A+    L   D ++ VN  ++   +LDQ    +      ++
Sbjct: 36 KQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI 91

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (120), Expect = 1e-09
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 8   IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG---IVKIGVA 64
           +V+ ++  GG A+    ++ GD ++++N   + + +L +A  AL+ A       + + VA
Sbjct: 45  VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104

Query: 65  KPLP 68
              P
Sbjct: 105 VCPP 108

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.1 bits (117), Expect = 2e-09
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
          N   T I I+ +VP   A L  RL  GDR+LS+N  D+ N++    +  +K A 
Sbjct: 31 NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEAD 84

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 2e-09
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          N+  I+I  +  G  A     L  GD +LSVN  DL++A+ D+AVQALK   + +V
Sbjct: 28 NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 3e-09
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           + ++  I I  + P  +A  D R+  GDR++ +N  ++ N   ++AV  L         +
Sbjct: 44  DEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSL 101

Query: 62  GVAKPLPIPDSSCSQVSHAGPGLG 85
            +A+P    D        +GP  G
Sbjct: 102 LIARPELQLDEGWMD-DDSGPSSG 124

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 3e-09
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP----RG 57
           N  + +  I ++  GG A    +L  G  +L VN   L      +A + +  A     R 
Sbjct: 28  NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87

Query: 58  IVKIGVAKPLPIPDS 72
            +   V +    P S
Sbjct: 88  YIDFLVTEFNSGPSS 102

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 4e-09
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 2  NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
            ++  I ++S+V GG A +D RL  GD+LLSV+   L   S ++A + +      +V +
Sbjct: 27 GQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTL 85

Query: 62 GVAKP 66
           VAK 
Sbjct: 86 EVAKQ 90

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
               ++  ++ GG+      L  GD +  +N   + N +++Q  + L+     I 
Sbjct: 23 ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT 78

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 5e-09
 Identities = 13/72 (18%), Positives = 29/72 (40%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
            +  + I  +  G  ++    + PGD +L +  T +   +  +A   +K  P G V I +
Sbjct: 55  GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI 114

Query: 64  AKPLPIPDSSCS 75
            +       + +
Sbjct: 115 RRKSLQSKETTA 126

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 5e-09
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
          ++I  +V GG A+    L  GD +L +N  ++    +++    L     G +   + 
Sbjct: 43 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLI 98

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 7e-09
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
           +    IR + PG  A+  A L+ GDRL+ VN  ++   +  Q V  ++ A    V++ V
Sbjct: 25 GKLGQYIRLVEPGSPAE-KAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAVRLLV 82

Query: 64 AKP 66
            P
Sbjct: 83 VDP 85

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (114), Expect = 8e-09
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 1  MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
             ++  ++I  L+ GG A+    +  GD +L+VN+  L + S D A++ L+G       
Sbjct: 21 ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV 80

Query: 61 IGVAKP 66
          + + + 
Sbjct: 81 VLILRG 86

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (115), Expect = 9e-09
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
           N   + I  L+  G A  D  L PGD L+SV   ++   +L + ++ L+    G +++I 
Sbjct: 47  NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106

Query: 63  VAKP-LPIPDSS 73
             +  L IP   
Sbjct: 107 AYRGFLEIPQEW 118

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (114), Expect = 9e-09
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 5   ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
            T + +  L P   A   A    GD ++S+   D    ++ + ++ LK      V++ V 
Sbjct: 35  NTPVQVHFLDPHCSAS-LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93

Query: 65  KPLPIPDSSCSQVSHAGPGLG 85
             L   DS+ S  + +GP  G
Sbjct: 94  SLL---DSTSSMHNKSGPSSG 111

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 1e-08
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 4   NETVIVIRSLVPGGVAQL-DARLIPGDRLLSVNETDLNNASLDQAVQALKGA---PRGIV 59
            +  +++  + PG  A L   RL  GD+++ +N  D+   + DQ V  +K +     G +
Sbjct: 32  QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 91

Query: 60  KIGVAKPLPIPDSS 73
            + V +P  + D  
Sbjct: 92  MLLV-RPNAVYDVV 104

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-08
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
           +  I ++++   G A  D RL  GD++++VN   L   + ++AV  LK   
Sbjct: 28 GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 79

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (111), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
              +  + S+  GGVA   A L  GD L+ VN  ++      Q V  ++   
Sbjct: 40 AFPALQYLESVDEGGVAW-RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG 91

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (111), Expect = 3e-08
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
              +  I I+S++ GG A  D RL   D+L++VN   L   S  +A++ L+ +      I
Sbjct: 51  TGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110

Query: 62  G 62
            
Sbjct: 111 R 111

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 3e-08
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 3  PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
           ++  I I  +   G A   A +  GD+LL VN   L  A   +AV+AL+GA    V++ 
Sbjct: 36 GDDEGIFISRVSEEGPAA-RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMR 93

Query: 63 V 63
          V
Sbjct: 94 V 94

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 3e-08
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
          + ++++  GG A+  A L   D +L +NE  + +    +    ++  P
Sbjct: 20 VRVQAVDSGGPAE-RAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCP 66

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 4e-08
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
            +   I +  +V  G A  +  L   DR++ VN  DL+ A+ DQAV+A K A    + + 
Sbjct: 38  SSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAK-EPIVVQ 96

Query: 63  VAKPLPIPDS 72
           V +    P S
Sbjct: 97  VLRRTSGPSS 106

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 5e-08
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
            +  + +  L   G A  + R+  GD+++ +N     + +  +A++ +K      V++ +
Sbjct: 34  YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLL 92

Query: 64  AKPLPIPDSS 73
            +      SS
Sbjct: 93  KRGTGSGPSS 102

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 6e-08
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
          I +++++P G A+ D R+  GDR+L+VN   L  A+  QAV+ L+     +V + + K  
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKG- 96

Query: 68 PIP 70
           +P
Sbjct: 97 QVP 99

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 7e-08
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +     + I++L+PG  A  D RL  GDR+L VN + L      +AV  ++      ++ 
Sbjct: 32  HLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRF 90

Query: 62  GVAKPLPIPDSSCSQVSHAGPGLG 85
            VAK     D   ++  H+GP  G
Sbjct: 91  LVAK----SDVETAKKIHSGPSSG 110

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 7e-08
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
               I I  + PG  A+  + L  GD++L VN     N   D+AV+ LK +   I+ +  
Sbjct: 44  YGLGIYITGVDPGSEAE-GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKD 102

Query: 64  AKPLPIPDSSCSQVSHAGPGLG 85
              LP   ++  +        G
Sbjct: 103 VGRLPHARTTVDETKWIASSSG 124

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 8e-08
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +       I  ++ G  A   A+L  GDR+L+VN   + N      V+ +K A    V +
Sbjct: 39  STITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAG-LSVTL 97

Query: 62  GVAKPLPIPDSS 73
            +     +   S
Sbjct: 98  RIIPQEELNSPS 109

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (106), Expect = 1e-07
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
          I I  ++ GG A L   L  GD++LSVN  DL NAS +QA  ALK A + + 
Sbjct: 35 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 86

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 2   NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +P +  I I  + P G A  D RL  G RLL VN+  L   +  +AVQ L+      + +
Sbjct: 40  DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTV 98

Query: 62  GVAKPLPIPDSS 73
            V        SS
Sbjct: 99  LVCDGFESGPSS 110

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
             +  I +  +  GG A     L  GDR+LS+N  D+  A  D AV  L  A    + + 
Sbjct: 35  AGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALL 93

Query: 63  VAKPLPIPDSS 73
           + +      SS
Sbjct: 94  LEREAGSGPSS 104

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
            +   I +  + PG +A+    L  GD++L VN+  L   +  +AV+ALKG+ + ++ + 
Sbjct: 32  EHGVGIYVSLVEPGSLAE-KEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVY 90

Query: 63  VAKPLPIPDS 72
            A  +  P S
Sbjct: 91  SAGRISGPSS 100

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          I ++ +     A L   L  GD++L +N  +    S D+A + LK A    + + +
Sbjct: 27 IFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 81

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 4   NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV-KIG 62
           N++VI I  + P  V      L PGD +LS++ T + + SL +A + L      +  +I 
Sbjct: 40  NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEIL 99

Query: 63  VAKPLPIPDSSCSQVS 78
                  P    S  S
Sbjct: 100 PVPQSQRPLRPSSGPS 115

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 3e-07
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
           +  I I  + PG ++  +  L  GD+++ VN  D +N    +AV  LK +    + I
Sbjct: 32 QKPGIFISHVKPGSLSA-EVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 88

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 8e-07
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 3   PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
              +  +I  +     A+    L  GDR++++N     +++ ++A Q L+ +     K+ 
Sbjct: 42  TLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSIT-SKVT 100

Query: 63  VAKPLPIPDSSCSQVSHAGPGLG 85
           +     + +S     S +GP  G
Sbjct: 101 LEIEFDVAESVIPS-SGSGPSSG 122

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9  VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
          +I SL+ GG+A+    +  G R++ +N   +     ++ V  L  A 
Sbjct: 23 IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV 68

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
              + I  + PG  A   ++L  GD +++++  + +  +  +A   +K A    + + +
Sbjct: 23 FNMPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTL 80

Query: 64 AK 65
           K
Sbjct: 81 QK 82

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (96), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
           E  + ++++ P G       L P DRLL VN     +      V  +  + 
Sbjct: 30 LEKGVYVKNIRPAGPGD-LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG 80

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 4e-06
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
          ++  I I  ++P   A   A L  GD++L+VN+ D  +    +AV+ LK A    +++
Sbjct: 39 SQLGIFISKVIPDSDAH-RAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRV 95

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 9e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 14 VPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
                Q    L  GD ++ +N+ ++ N S  + V  LK  P G
Sbjct: 37 KQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG 80

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 5  ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
           T I++  +   G A+  A L PGD ++++N     N    +A   ++ +    +++ + 
Sbjct: 29 HTPIIVTKVTERGKAE-AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLD 86

Query: 65 KP 66
          + 
Sbjct: 87 RS 88

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
           +  I +  +  G +A   A L  GD+LL  N  +L +A+  QA   +    
Sbjct: 40 EKGGIYVSKVTVGSIAH-QAGLEYGDQLLEFNGINLRSATEQQARLIIGQQC 90

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
              + I SL  GG A   A +  GD +LS++       +  +A   +K    G + + +
Sbjct: 27 FNMPLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTL 84

Query: 64 AKPLPIPDSSCS 75
           +      S   
Sbjct: 85 QRASAAAKSEPV 96

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 8e-04
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
          I S+V    A  +  L     +  +N  ++      Q    L  +   +V I +
Sbjct: 27 ITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI 78

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 34.2 bits (78), Expect = 0.001
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 8  IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
          +V+ +  PGG A+       GD +++V+ T +   SL      L+G     V++ +  P
Sbjct: 21 VVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 78

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 4  NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
              +VI  + PG  A   A L PGD +L+++     + +   A   +K A    + + +
Sbjct: 27 FNQPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKI 84

Query: 64 AKPLPIPDS 72
           +      S
Sbjct: 85 DRAETRLWS 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.59
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.58
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.56
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.55
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.54
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.53
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.53
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.53
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.52
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.49
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.49
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.48
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.47
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.45
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.45
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.44
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.44
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.43
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.43
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.43
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.43
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.43
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.42
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.42
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.42
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.41
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.4
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.4
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.39
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.39
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.39
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.39
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.39
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.38
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.38
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.37
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.37
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.36
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.36
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.35
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.35
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.34
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.33
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.33
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.32
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.3
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.3
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.28
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.26
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.26
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.25
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.24
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.95
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.94
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.91
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.85
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.79
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.68
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.66
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.65
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.51

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.3e-15  Score=98.46  Aligned_cols=63  Identities=43%  Similarity=0.640  Sum_probs=59.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...|+||..|.++++|+++|+|++||+|++|||+++.+++|++++++|++++ ..|.|+|.|+.
T Consensus        29 ~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~-~~v~L~v~Rpg   91 (92)
T d2fe5a1          29 GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKPG   91 (92)
T ss_dssp             TBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCC-CEEEEEEECCC
Confidence            4578999999999999999999999999999999999999999999999986 78999999975

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.9e-15  Score=98.24  Aligned_cols=64  Identities=39%  Similarity=0.589  Sum_probs=59.7

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|++++ ..|.|+|.|..+
T Consensus        29 ~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~-~~v~L~v~R~~p   92 (93)
T d1rgra_          29 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRKP   92 (93)
T ss_dssp             TCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTT-TEEEEEEECSCC
T ss_pred             CCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEeCCC
Confidence            3568999999999999999999999999999999999999999999999885 799999999764

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.6e-15  Score=98.67  Aligned_cols=63  Identities=24%  Similarity=0.430  Sum_probs=58.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|+||++|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++ ..|+|+|.|..+
T Consensus        32 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~kP   94 (94)
T d1wf8a1          32 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGREKP   94 (94)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC-SEEEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            458999999999999999999999999999999999999999999999986 789999988653

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.3e-15  Score=99.60  Aligned_cols=64  Identities=31%  Similarity=0.395  Sum_probs=58.9

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+.++||.+|.++++|+++|+|++||+|++|||+++.+++|++++++|++++ ..+.|+|.|...
T Consensus        39 ~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~-~~v~l~v~r~~~  102 (107)
T d1uhpa_          39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAK-EPIVVQVLRRTS  102 (107)
T ss_dssp             CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEEECCS
T ss_pred             CCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCC
Confidence            3568999999999999999999999999999999999999999999999986 689999987553

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.3e-15  Score=97.10  Aligned_cols=63  Identities=35%  Similarity=0.526  Sum_probs=58.7

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...|+||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++ ..|+|+|.|..
T Consensus        29 ~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~-~~v~L~v~R~g   91 (92)
T d1t2ma1          29 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQG   91 (92)
T ss_dssp             CSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEEECC
T ss_pred             CCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            3568999999999999999999999999999999999999999999999986 78999999864

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.7e-14  Score=96.51  Aligned_cols=62  Identities=32%  Similarity=0.526  Sum_probs=58.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..++||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++ ..|.|+|.|..
T Consensus        36 ~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~-~~v~L~v~R~~   97 (99)
T d1ozia_          36 HGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ   97 (99)
T ss_dssp             CCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC-SEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCC-CeEEEEEEeCC
Confidence            458999999999999999999999999999999999999999999999986 79999999864

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=98.25  Aligned_cols=64  Identities=28%  Similarity=0.424  Sum_probs=59.4

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      .+.++||..|.++++|+++|+|++||+|++||++++.+++|++++++|+++. ..|.|+|.|...
T Consensus        36 ~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~R~~~   99 (105)
T d1whaa_          36 GDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLEREAG   99 (105)
T ss_dssp             TCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCC-SCEEEEEEECCC
T ss_pred             CCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            4678999999999999999999999999999999999999999999999885 689999998664

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.53  E-value=1.8e-14  Score=95.58  Aligned_cols=63  Identities=38%  Similarity=0.555  Sum_probs=57.2

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC--CCeEEEEEEcC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP--RGIVKIGVAKP   66 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~--~~~V~L~V~r~   66 (144)
                      ++.|+||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|+.+.  ...|.|+|.|.
T Consensus        27 ~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          27 GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            3569999999999999999999999999999999999999999999998752  24799999985

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=96.13  Aligned_cols=61  Identities=33%  Similarity=0.413  Sum_probs=55.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|+||+.|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++ ..|.|+|.|.
T Consensus        35 ~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~-~~v~L~V~r~   95 (96)
T d2fcfa1          35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSI   95 (96)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECC
T ss_pred             CCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEc
Confidence            458999999999999999999999999999999999999999999999986 6899999873

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.9e-15  Score=100.98  Aligned_cols=64  Identities=31%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|++.+ ..|+|+|+|...
T Consensus        42 ~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~-~~v~L~V~r~~~  105 (111)
T d1ujua_          42 TDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDGFE  105 (111)
T ss_dssp             TCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCS-SEEEECCCCCCC
T ss_pred             CCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            3568999999999999999999999999999999999999999999999885 789999998765

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=2.1e-14  Score=95.32  Aligned_cols=60  Identities=32%  Similarity=0.475  Sum_probs=56.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..|+||..|.|+++|+++|+|++||+|++|||+++.+++|++++++|++++ ..|+|+|.|
T Consensus        34 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~-~~v~L~V~R   93 (94)
T d1ihja_          34 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEAD-FKIELEIQT   93 (94)
T ss_dssp             EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEe
Confidence            457999999999999999999999999999999999999999999999985 789999986

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.2e-14  Score=96.97  Aligned_cols=63  Identities=32%  Similarity=0.405  Sum_probs=58.8

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|++++ ..+.|+|.|..
T Consensus        34 ~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~-~~v~l~v~r~~   96 (110)
T d1um1a_          34 GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSD   96 (110)
T ss_dssp             CCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            3568999999999999999999999999999999999999999999999986 78999998865

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.2e-13  Score=91.95  Aligned_cols=64  Identities=30%  Similarity=0.444  Sum_probs=59.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|++++ ..+.|+|.|....
T Consensus        27 ~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~r~~~~   90 (95)
T d1n7ea_          27 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQTDA   90 (95)
T ss_dssp             TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEECCCCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCCC
Confidence            457999999999999999999999999999999999999999999999985 7899999997653

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=4.2e-14  Score=94.72  Aligned_cols=62  Identities=31%  Similarity=0.483  Sum_probs=58.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..++||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++ ..|+|+|.|..
T Consensus        37 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~-~~v~L~V~r~~   98 (99)
T d1p1da2          37 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRKDE   98 (99)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT-TCEEEEEECCC
T ss_pred             CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            457999999999999999999999999999999999999999999999986 68999999864

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-14  Score=100.34  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      +.+|||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|+..+...|.|+|+|....
T Consensus        56 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~~  120 (130)
T d1i16a_          56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC
T ss_pred             CCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCCC
Confidence            56899999999999999999999999999999999999999999999998766899999986543

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=95.05  Aligned_cols=63  Identities=24%  Similarity=0.366  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|+||..|.++++|+++|+|++||+|++||++++.+++|++++++|+++. ..+.|+|.|...
T Consensus        48 ~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~-~~v~l~v~r~~~  110 (117)
T d1ujda_          48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRLDLN  110 (117)
T ss_dssp             CEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEESSCC
T ss_pred             CcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            558999999999999999999999999999999999999999999999986 689999998653

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.2e-13  Score=91.21  Aligned_cols=61  Identities=38%  Similarity=0.420  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|+||..|.++++|+++|+|++||+|++|||+++.+++|++++.+|+++. ..|.|+|.|.
T Consensus        29 ~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~   89 (90)
T d1qava_          29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG-KEVVLEVKYM   89 (90)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEC
T ss_pred             CCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEEe
Confidence            468999999999999999999999999999999999999999999999986 6899999874

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-13  Score=90.58  Aligned_cols=60  Identities=33%  Similarity=0.422  Sum_probs=56.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..++||..|.++|+|+++| |++||+|++|||+++.+++|.+++.+|++++ ..+.|+|.|.
T Consensus        38 ~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   97 (97)
T d1x5qa1          38 DEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRE   97 (97)
T ss_dssp             CCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCC-CEEEEEEEEC
Confidence            5689999999999999999 9999999999999999999999999999975 7999999884

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.4e-14  Score=94.82  Aligned_cols=62  Identities=23%  Similarity=0.288  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~   66 (144)
                      +.|+||..|.++++|+++|+|++||+|++|||+++.+++|++++++|+.+.. ..+.|+|.||
T Consensus        46 ~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          46 RLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             SEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             CcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            4689999999999999999999999999999999999999999999997642 4799999885

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-13  Score=92.84  Aligned_cols=64  Identities=20%  Similarity=0.422  Sum_probs=58.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      ..++||..|.++++|+++|+|++||+|++||++++.+++|++++++|+.++. ..|.|+|.|..+
T Consensus        43 ~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~~~  107 (123)
T d1ueqa_          43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcCCC
Confidence            4689999999999999999999999999999999999999999999999853 579999998654

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=89.38  Aligned_cols=61  Identities=18%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..++||..|.++++|++.+ |++||+|++|||+++.+++|++++++|++++ ..+.|+|.|..
T Consensus        24 ~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~-~~v~L~V~R~~   84 (85)
T d1rgwa_          24 NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQKSK   84 (85)
T ss_dssp             TSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCS-SCEEEEEESCC
T ss_pred             CCCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEECC
Confidence            4579999999999999877 9999999999999999999999999999986 68999999864

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=92.20  Aligned_cols=61  Identities=26%  Similarity=0.391  Sum_probs=55.8

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      .+.||||+.|.+++||++  +|++||+|++|||+++.+++|.+++++|++++ ..+.|+|.|+.
T Consensus        41 ~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~-~~v~L~V~R~~  101 (103)
T d2h3la1          41 DDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVREV  101 (103)
T ss_dssp             TCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHCC-SEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEEEC
Confidence            357899999999999975  59999999999999999999999999999986 78999998854

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.8e-13  Score=88.00  Aligned_cols=62  Identities=29%  Similarity=0.441  Sum_probs=57.3

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ...++||..|.++++|+++| |++||+|++|||+++.+++|++++++|+..+ ..+.|+|.++.
T Consensus        25 ~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~-~~v~L~v~~~~   86 (91)
T d1g9oa_          25 GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAVRLLVVDPE   86 (91)
T ss_dssp             TCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEECCC
T ss_pred             CCCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEECCC
Confidence            35689999999999999999 9999999999999999999999999999885 78999998754

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.8e-13  Score=86.25  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      +.++||.+|.+++||+++| |+.||+|++|||+++.+++|.+++.++++++ ..++|.|.|.
T Consensus        17 ~~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~-~~v~L~v~R~   76 (77)
T d2f5ya1          17 DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRM   76 (77)
T ss_dssp             SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEE
Confidence            4579999999999999999 9999999999999999999999999999986 7899999874

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=5e-13  Score=88.22  Aligned_cols=61  Identities=21%  Similarity=0.322  Sum_probs=56.9

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ...|+||..|.++++|+++| |+.||+|++|||+++.+++|.+++.+|+.++ ..+.|+|.|.
T Consensus        30 ~~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~-~~v~L~v~R~   90 (91)
T d1m5za_          30 LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG-NKLDLVISRN   90 (91)
T ss_dssp             TSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
Confidence            35689999999999999999 9999999999999999999999999999886 7899999874

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=92.85  Aligned_cols=64  Identities=27%  Similarity=0.420  Sum_probs=57.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      ..++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|+.++. ..|.|+|.|...
T Consensus        33 ~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            4579999999999999999999999999999999999999999999998743 479999988654

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.2e-13  Score=90.49  Aligned_cols=62  Identities=18%  Similarity=0.329  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..++||..|.++++|++.+ |++||+|++||++++.+++|.+++++|+.++ ..|.|+|.|...
T Consensus        29 ~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~~~   90 (94)
T d1vb7a_          29 HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSG   90 (94)
T ss_dssp             TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred             CCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            4679999999999999988 9999999999999999999999999999986 789999998653

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3e-13  Score=90.14  Aligned_cols=61  Identities=28%  Similarity=0.505  Sum_probs=55.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC---CCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP---RGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~---~~~V~L~V~r   65 (144)
                      ..++||+.|.++++|+++|+|++||+|++|||+++.+++|++++++|+++.   +.++.|.+.|
T Consensus        33 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          33 GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            457999999999999999999999999999999999999999999999873   3578888775

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.4e-13  Score=87.14  Aligned_cols=59  Identities=27%  Similarity=0.469  Sum_probs=53.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEE
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGV   63 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V   63 (144)
                      ..++||.+|.++++|+++|+|++||+|++|||+++.+++|++++++|++++. ..+.|+|
T Consensus        25 ~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          25 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            4579999999999999999999999999999999999999999999999864 3577765

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=4.4e-13  Score=89.62  Aligned_cols=60  Identities=28%  Similarity=0.422  Sum_probs=55.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..|+||+.|.++++|+++|+|++||+|++|||+++.+++|++++++|+.++ ..+.|+|..
T Consensus        37 ~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v~p   96 (98)
T d1rzxa_          37 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANS-SNLIITVKP   96 (98)
T ss_dssp             EEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTC-TEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence            357999999999999999999999999999999999999999999999986 689998864

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.6e-13  Score=92.02  Aligned_cols=63  Identities=25%  Similarity=0.269  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..++||.+|.++++|+++|+|++||+|++|||+++.+++|++++++|++++ ..|.|+|.|...
T Consensus        42 ~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~-~~v~l~V~r~~~  104 (114)
T d1uewa_          42 TVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQEE  104 (114)
T ss_dssp             CCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTT-TEEEEEECCCSC
T ss_pred             cCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence            347899999999999999999999999999999999999999999999885 689999988653

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.8e-13  Score=90.93  Aligned_cols=64  Identities=28%  Similarity=0.445  Sum_probs=58.6

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...++||..|.++++|+++|+|++||+|++||++++.+++|++++.+|+++. ..|.|+|.+...
T Consensus        40 ~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~-~~v~l~v~~~~~  103 (117)
T d1v62a_          40 NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEILPVPQ  103 (117)
T ss_dssp             SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS-SEEEEEECCBTT
T ss_pred             CCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC-CcEEEEEEECCC
Confidence            3568999999999999999999999999999999999999999999999985 789999977543

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.8e-13  Score=89.71  Aligned_cols=62  Identities=42%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|+||..|.++++|+++|+|++||+|++|||+++.+++|++++++|+.++ ..+.|+|.|..
T Consensus        32 ~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~L~v~~~~   93 (102)
T d1tp5a1          32 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP   93 (102)
T ss_dssp             GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEEECH
T ss_pred             CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            458999999999999999999999999999999999999999999999875 78999998743

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-12  Score=85.48  Aligned_cols=60  Identities=23%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      +.++||.+|.+++||+++| |++||+|++|||+++.++++++++.+|+..+...+.|+|.+
T Consensus        24 ~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          24 DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            4589999999999999999 99999999999999999999999999998876689999864

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.4e-13  Score=90.36  Aligned_cols=61  Identities=23%  Similarity=0.413  Sum_probs=53.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|+..+...+.+.+.|
T Consensus        34 ~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r   94 (107)
T d1x6da1          34 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTR   94 (107)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEEC
Confidence            5689999999999999999999999999999999999999999999999864333333333

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.5e-13  Score=90.97  Aligned_cols=63  Identities=16%  Similarity=0.273  Sum_probs=58.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++||++++.+++|.+++++|+..+ ..|.|+|.|...
T Consensus        35 ~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~-~~v~l~v~R~~~   97 (103)
T d1wfva_          35 KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGTG   97 (103)
T ss_dssp             TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC-SEECEEEECTTC
T ss_pred             CCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC-CEEEEEEEECCC
Confidence            457999999999999999999999999999999999999999999999986 789999999764

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.8e-13  Score=92.55  Aligned_cols=63  Identities=22%  Similarity=0.251  Sum_probs=57.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      +.++||..|.++++|+++| |++||+|++|||+++.+++|++++++|++++...|.|+|.++.+
T Consensus        35 ~~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~~~~   97 (111)
T d1vaea_          35 NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLD   97 (111)
T ss_dssp             SSSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEEC
T ss_pred             CccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEECCCC
Confidence            4579999999999999999 99999999999999999999999999999876689999987544

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.7e-13  Score=86.75  Aligned_cols=60  Identities=17%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK   65 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r   65 (144)
                      ..++||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++ ..|+|+|..
T Consensus        24 ~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~L~i~p   83 (88)
T d1kwaa_          24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIVP   83 (88)
T ss_dssp             GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEe
Confidence            458999999999999999999999999999999999999999999999985 689999863

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.1e-12  Score=88.15  Aligned_cols=60  Identities=23%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..+++|..|.++++|+++| |++||+|++|||+++.+++|.+++++|++++ ..|.|+|.+.
T Consensus        42 ~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~~~-~~v~L~V~~~  101 (104)
T d1q3oa_          42 PALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVMV  101 (104)
T ss_dssp             CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence            4478999999999999999 9999999999999999999999999999985 7899999763

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=8.8e-13  Score=88.98  Aligned_cols=60  Identities=28%  Similarity=0.374  Sum_probs=54.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..|+||..|.++++|+++| |++||+|++||++++.+++|++++++|+.+.  .+.|+|.|..
T Consensus        40 ~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~--~v~l~V~~~~   99 (104)
T d1wi2a_          40 QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR--EISMRVRFFS   99 (104)
T ss_dssp             CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS--SEEEEEECCC
T ss_pred             CCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC--eEEEEEEECC
Confidence            4689999999999999999 9999999999999999999999999999874  5889987643

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.8e-13  Score=86.24  Aligned_cols=59  Identities=31%  Similarity=0.487  Sum_probs=55.0

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      ..++||.+|.++++|++.|+|++||+|++|||+++.+++|++++++|++++ ..++|+|.
T Consensus        29 ~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~-~~v~L~Vl   87 (88)
T d2fnea1          29 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVL   87 (88)
T ss_dssp             EEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEE
T ss_pred             CcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEE
Confidence            458999999999999999999999999999999999999999999999986 68888874

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.4e-12  Score=88.62  Aligned_cols=54  Identities=30%  Similarity=0.534  Sum_probs=50.4

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG   57 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~   57 (144)
                      ...++||+.|.++++|+++|+|++||+|++||++++.+++|++++++|+.++..
T Consensus        24 ~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_          24 SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             CCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCC
Confidence            356899999999999999999999999999999999999999999999998643

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.1e-12  Score=88.41  Aligned_cols=62  Identities=21%  Similarity=0.298  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..++||..+.++++|++.+ |++||+|++||++++.+++|++++++|++.+ ..|.|+|+|...
T Consensus        28 ~~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~-~~v~L~v~R~~~   89 (103)
T d1wf7a_          28 NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQRASA   89 (103)
T ss_dssp             TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS-SEEEEEECCCSC
T ss_pred             CCCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCC
Confidence            4679999999999999866 9999999999999999999999999999985 799999998664

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=9e-13  Score=92.00  Aligned_cols=64  Identities=23%  Similarity=0.346  Sum_probs=58.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      ..+++|..|.++++|+++|+|++||+|++|||+++.+++|++++++|+..+. ..|+|+|.|...
T Consensus        48 ~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~~  112 (126)
T d1wifa_          48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFL  112 (126)
T ss_dssp             TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSS
T ss_pred             CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCCC
Confidence            4579999999999999999999999999999999999999999999998753 589999999754

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=88.91  Aligned_cols=61  Identities=23%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      +.|+||..|.++++|++++ |++||+|++||++++.+++|++++.+|+.++ ..|.|+|.|..
T Consensus        41 ~~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~p  101 (117)
T d1uita_          41 KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYNP  101 (117)
T ss_dssp             TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCC-SEEEEEECCCS
T ss_pred             CCCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCC-CeEEEEEEECC
Confidence            5689999999999999998 9999999999999999999999999999885 78999997754

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.7e-12  Score=87.04  Aligned_cols=59  Identities=20%  Similarity=0.407  Sum_probs=55.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      ..++||.+|.++++|+++|+|++||+|++||++++.+++|++++++|+.++ +.|+|+|.
T Consensus        40 ~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~-~~v~L~v~   98 (100)
T d1va8a1          40 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLI   98 (100)
T ss_dssp             SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEE
T ss_pred             CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC-CeEEEEEE
Confidence            457999999999999999999999999999999999999999999999986 68999875

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=7.3e-13  Score=92.52  Aligned_cols=63  Identities=30%  Similarity=0.473  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC------CCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP------RGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~------~~~V~L~V~r~~   67 (144)
                      +.++||..|.++++|+++|+|++||+|++||++++.+++|.+++++||++.      ...|+|+|.|..
T Consensus        54 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_          54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             EEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             cCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCC
Confidence            458999999999999999999999999999999999999999999999762      258999998864

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.8e-12  Score=88.86  Aligned_cols=61  Identities=30%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..|+||..|.++++|+++| |++||+|++|||+++.+++|++++++|+..+  .+.|+|.+...
T Consensus        45 ~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~--~v~l~v~~~~~  105 (128)
T d1uf1a_          45 GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR--HLILTVKDVGR  105 (128)
T ss_dssp             TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS--EEEEEEECCSC
T ss_pred             CCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC--cEEEEEEECCc
Confidence            4589999999999999999 9999999999999999999999999999864  78899987654

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.2e-12  Score=88.25  Aligned_cols=61  Identities=38%  Similarity=0.495  Sum_probs=55.4

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..++||.+|.++++|+ .+ |++||+|++|||+++.+++|.+++++|++++ ..+.|+|.|+..
T Consensus        38 ~~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~l~V~R~~~   98 (104)
T d2csja1          38 ETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRPRK   98 (104)
T ss_dssp             CCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSC-SEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEeCCC
Confidence            5689999999999997 44 9999999999999999999999999999986 689999988643

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.2e-12  Score=88.28  Aligned_cols=62  Identities=21%  Similarity=0.343  Sum_probs=57.1

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..++||..|.++++|+..+ |++||+|++||++++.+++|.+++++|+..+ ..|.|+|.|...
T Consensus        28 ~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~-~~v~l~V~R~~~   89 (103)
T d1v5la_          28 NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDRAET   89 (103)
T ss_dssp             TEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCC-SEEECEECCCTT
T ss_pred             CCCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEECCc
Confidence            4679999999999999877 9999999999999999999999999999985 799999998664

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3.4e-12  Score=88.06  Aligned_cols=63  Identities=24%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC---CCCeEEEEEEcCCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA---PRGIVKIGVAKPLP   68 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~---~~~~V~L~V~r~~~   68 (144)
                      .++||..|.++++|+++|+|++||+|++|||+++.+++|++++.+|+.+   ....|.|+|.|..+
T Consensus        43 ~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~pp  108 (118)
T d1v6ba_          43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPP  108 (118)
T ss_dssp             CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCS
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCCC
Confidence            4799999999999999999999999999999999999999999999865   23579999998643

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.32  E-value=4.2e-12  Score=83.71  Aligned_cols=63  Identities=24%  Similarity=0.361  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..+++|..+.+++||+++| |++||+|++|||.++.++++.+++.+|+..+...|.|+|.|+..
T Consensus        18 ~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3          18 GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            4579999999999999999 99999999999999999999999999997665689999999753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.2e-12  Score=82.28  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=51.4

Q ss_pred             EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      +|.+|.++++|+++| |++||+|++|||+++.+++|++++.+|++++ ..|+|+|.
T Consensus        26 ~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~-~~v~l~v~   79 (82)
T d1r6ja_          26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITIM   79 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEE
T ss_pred             EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCC-CEEEEEEE
Confidence            789999999999999 9999999999999999999999999999986 78999886

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.1e-12  Score=91.07  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCC-eEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~-~V~L~V~r~   66 (144)
                      ..++||..|.++++|+++|+|++||+|++||++++.+++|++++++|+.++.. .+.|++.++
T Consensus        44 ~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~~~  106 (122)
T d1v5qa_          44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD  106 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEecc
Confidence            45799999999999999999999999999999999999999999999988532 455555443

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.5e-12  Score=85.41  Aligned_cols=64  Identities=22%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC----CCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP----RGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~----~~~V~L~V~r~~   67 (144)
                      ...++||..|.++++|+++|+|++||+|++|||+++.+++|++++++|++++    ...+.|.|.+..
T Consensus        30 ~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~~~   97 (103)
T d1ufxa_          30 RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             SCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             CCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeCCC
Confidence            3456899999999999999999999999999999999999999999999852    246777776543

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.8e-12  Score=80.66  Aligned_cols=55  Identities=24%  Similarity=0.406  Sum_probs=51.1

Q ss_pred             EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208           8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA   64 (144)
Q Consensus         8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~   64 (144)
                      -+|.+|.++++|+++| |++||+|++|||+++.+++|++++++|++++ ..+.|+|.
T Consensus        22 g~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~l~vi   76 (79)
T d1y7na1          22 GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM   76 (79)
T ss_dssp             TEEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEEE
T ss_pred             CEEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCC-CEEEEEEE
Confidence            3799999999999987 9999999999999999999999999999986 68999884

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.7e-12  Score=84.99  Aligned_cols=60  Identities=30%  Similarity=0.436  Sum_probs=53.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~   67 (144)
                      ..++||..|.++++|+++| |++||+|++|||+++.+++|.+++++|+..+  .+.|+|.|..
T Consensus        34 ~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~--~~~l~V~~~~   93 (101)
T d1ueza_          34 GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVYSAG   93 (101)
T ss_dssp             TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS--SCCEEECCCC
T ss_pred             CCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCC--CEEEEEEECC
Confidence            4589999999999999999 9999999999999999999999999999875  4667777654

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.1e-12  Score=84.88  Aligned_cols=59  Identities=27%  Similarity=0.417  Sum_probs=53.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP   66 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~   66 (144)
                      ..|+||..|.++++|+++| |+.||+|++|||+++.+++|.+++++|+.++  .+.|+|.+.
T Consensus        33 ~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~--~~~l~v~~~   91 (101)
T d1x5na1          33 KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTISIVAA   91 (101)
T ss_dssp             SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS--SEEEEECSS
T ss_pred             CCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC--CEEEEEEEC
Confidence            4589999999999999998 9999999999999999999999999999985  467777653

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.4e-12  Score=85.35  Aligned_cols=60  Identities=25%  Similarity=0.304  Sum_probs=53.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEE
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVA   64 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~   64 (144)
                      ..++||..+.++++|+++|+|++||+|++||++++.+++|++++++|++++. ..+.|.|.
T Consensus        37 ~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v~   97 (99)
T d1x5ra1          37 SSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVE   97 (99)
T ss_dssp             SSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEE
Confidence            4679999999999999999999999999999999999999999999997743 35666664

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-11  Score=85.45  Aligned_cols=64  Identities=25%  Similarity=0.417  Sum_probs=55.2

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ...||||..|.++++|+++|+|++||+|++|||+++.+  +.+++.+++......|.|.|.|+...
T Consensus        46 ~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~~~v~l~v~r~~~~  109 (124)
T d1wh1a_          46 DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPELQ  109 (124)
T ss_dssp             SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEECSSC
T ss_pred             CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCCCcEEEEEEeCCCc
Confidence            46789999999999999999999999999999999975  57788888876556889999886543

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-11  Score=82.92  Aligned_cols=63  Identities=25%  Similarity=0.383  Sum_probs=54.4

Q ss_pred             CCcEEEEEEcCCChhhh-cCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC---CCeEEEEEEcCC
Q psy3208           5 ETVIVIRSLVPGGVAQL-DARLIPGDRLLSVNETDLNNASLDQAVQALKGAP---RGIVKIGVAKPL   67 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~-~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~---~~~V~L~V~r~~   67 (144)
                      ..++||.+|.++++|++ .|+|++||+|++|||+++.+++|++++++|+.+.   ...+.|+|++..
T Consensus        33 ~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~~   99 (106)
T d2cs5a1          33 KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA   99 (106)
T ss_dssp             TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             CCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCCC
Confidence            45799999999999998 5679999999999999999999999999998753   236888887643

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.2e-09  Score=72.09  Aligned_cols=52  Identities=21%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             ChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208          17 GVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP   68 (144)
Q Consensus        17 g~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~   68 (144)
                      .+++..++|++||+|++|||+++.+++|++++++||+++. ..|.|+|.|...
T Consensus        40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~~~   92 (96)
T d1ujva_          40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            3455555699999999999999999999999999998753 589999998543

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=2.4e-09  Score=69.37  Aligned_cols=61  Identities=25%  Similarity=0.352  Sum_probs=51.0

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      ...|++|..|.+++||+++| |++||.|++|||+++.++  .+....++.. +...+.|+|.|..
T Consensus        14 ~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1          14 DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             -CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            45689999999999999999 999999999999999765  5666777654 3468999998853

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=3.5e-10  Score=73.58  Aligned_cols=61  Identities=16%  Similarity=0.350  Sum_probs=53.7

Q ss_pred             CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ...|++|..|.+++||+++| |++||.|++||++++.+  .+++.+++++.+ ..+.|+|.|...
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~~~~~l~~~~-~~v~l~v~R~~~   83 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKP-SVLALNIQRGDS   83 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSS--HHHHHHHTTTCC-SCCCEEEESSSC
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCC-CEEEEEEEECCE
Confidence            35689999999999999999 99999999999999965  588889998765 689999999764

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.4e-09  Score=70.72  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=52.3

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI   69 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~   69 (144)
                      ..|++|..|.+++||+++| |++||.|++|||.++.++  .++.++++.  ...+.|+|.|....
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s~--~dl~~~l~~--g~~v~l~v~R~g~~   89 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRET   89 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHTT--CSSEEEEEEETTEE
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCCH--HHHHHHhcC--CCEEEEEEEECCEE
Confidence            5689999999999999999 999999999999999754  778888863  36899999998753

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.79  E-value=9.5e-09  Score=67.28  Aligned_cols=61  Identities=8%  Similarity=0.044  Sum_probs=53.7

Q ss_pred             CCcEEEEEEcCC--------ChhhhcCCc-CCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPG--------GVAQLDARL-IPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~g--------g~A~~~GrL-~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~   68 (144)
                      ..++.|.+|.+|        +||+++| | ++||+|++|||+++..+  .+++++|+..+...|.|+|.|...
T Consensus        11 ~~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~~V~L~i~R~g~   80 (91)
T d1k32a1          11 GDHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRLSGKGG   80 (91)
T ss_dssp             TTEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEEECSSS
T ss_pred             CCeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCc--ceeEEEEecCCCCEEEEEEEeCCC
Confidence            457899999988        9999999 7 89999999999999876  468899999887899999999654

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=4.5e-09  Score=68.91  Aligned_cols=61  Identities=13%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~   68 (144)
                      ..|++|..|.+++||+++| |+.||.|++||+.++.++  .+...++.... ...+.|+|.|...
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4599999999999999999 999999999999999877  66777887653 4689999999764

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.6e-09  Score=68.45  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCCCCCcc
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPIPDSSC   74 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~~~~~~   74 (144)
                      ..|++|..|.+++||+++| |++||.|++|||+++.++  .+....+... ....+.|+|.|........+
T Consensus        25 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v   92 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLTLQV   92 (99)
T ss_dssp             --CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC-----CCCEEE
T ss_pred             CCccEEEEecCCCCHHHcC-CCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEECCEEEEEEE
Confidence            4689999999999999999 999999999999999876  5566666544 34689999999876544433

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.65  E-value=3.6e-08  Score=65.65  Aligned_cols=58  Identities=29%  Similarity=0.333  Sum_probs=50.3

Q ss_pred             CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208           6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL   67 (144)
Q Consensus         6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~   67 (144)
                      .|++|..|.+++||+. + |++||+|++|||..+.+  +.+...+|+.. ++..|.|+|.|..
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEECC
Confidence            3899999999999985 6 99999999999999965  57888999875 3578999998864

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.51  E-value=1e-07  Score=61.55  Aligned_cols=61  Identities=11%  Similarity=0.025  Sum_probs=51.8

Q ss_pred             CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208           5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP   68 (144)
Q Consensus         5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~   68 (144)
                      -.|+.|..+.++++|+++| |++||.|++|||+++.++  .+...+++.. ....+.|+|.|...
T Consensus        18 ~~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~l~v~R~g~   79 (87)
T d2i6va1          18 VLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecH--HHHHHHHHhhccccccEEEEEECCE
Confidence            3588999999999999999 999999999999999765  6677787664 33689999999764