Psyllid ID: psy3215

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQSTPLLKVP
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccc
MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQrmnpvgytADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEvetdrqaekqstpllkvp
milhkitklrehwdetnnkvmarktqldsmlsdsqrydakrqevdGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVetdrqaekqstpllkvp
MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQSTPLLKVP
*********************************************GWLTR******RMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA**************************
MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMEN*************VLEVQLREQKSIHADLHQFKQQIVLFNQLT*****************ITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAE*********************L***
MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTM**********************
MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEV*****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQSTPLLKVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query186 2.2.26 [Sep-21-2011]
Q9VDW6 3598 Dystrophin, isoforms A/C/ yes N/A 0.908 0.046 0.585 7e-55
Q9VDW3 1669 Dystrophin, isoform B OS= no N/A 0.908 0.101 0.579 8e-55
P11532 3685 Dystrophin OS=Homo sapien no N/A 0.822 0.041 0.306 2e-18
O97592 3680 Dystrophin OS=Canis famil yes N/A 0.881 0.044 0.293 3e-18
Q5GN48 3674 Dystrophin OS=Sus scrofa yes N/A 0.881 0.044 0.293 6e-18
P11533 3660 Dystrophin OS=Gallus gall no N/A 0.881 0.044 0.287 7e-17
P11531 3678 Dystrophin OS=Mus musculu yes N/A 0.822 0.041 0.282 4e-16
P46939 3433 Utrophin OS=Homo sapiens no N/A 0.865 0.046 0.300 1e-14
Q9QXZ0 7354 Microtubule-actin cross-l no N/A 0.897 0.022 0.244 2e-09
D3ZHV2 5430 Microtubule-actin cross-l no N/A 0.897 0.030 0.244 3e-09
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1 SV=3 Back     alignment and function desciption
 Score =  213 bits (541), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/169 (58%), Positives = 133/169 (78%)

Query: 5    KITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYT 64
            K+T+LREHWDET+  V+ R  QL +MLSDSQR++AKR E++ WL RME R +RM  +  T
Sbjct: 2339 KVTRLREHWDETSQCVLQRAAQLKNMLSDSQRFEAKRLELEKWLARMEQRAERMGTIATT 2398

Query: 65   ADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNN 124
            AD+LE Q +EQKS HA+LHQ KQ   +FN+LTQKLI+VY +DDTTR+KK+TE +NQRY N
Sbjct: 2399 ADILEAQQKEQKSFHAELHQNKQHFDIFNELTQKLIAVYPNDDTTRIKKMTEVINQRYAN 2458

Query: 125  LNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDR 173
            LN+ +INRGK L++A+ SLQ+FD+++D FLA+LSE E+  E  E + +R
Sbjct: 2459 LNSGVINRGKQLHAAVHSLQSFDRAMDQFLAFLSETETLCENAESDIER 2507
Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. Both det and Dg are required for maintenance of early dpp signaling in the presumptive crossvein. Isoform A is not required to maintain muscle integrity, but plays a role in neuromuscular homeostasis by regulating neurotransmitter release. May play a role in anchoring the cytoskeleton to the plasma membrane.
Drosophila melanogaster (taxid: 7227)
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3 Back     alignment and function description
>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3 Back     alignment and function description
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1 Back     alignment and function description
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1 Back     alignment and function description
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1 Back     alignment and function description
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3 Back     alignment and function description
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2 Back     alignment and function description
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1 PE=1 SV=2 Back     alignment and function description
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus GN=Macf1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
242011413225 hypothetical protein Phum_PHUM253780 [Pe 0.973 0.804 0.696 5e-72
383862415 4129 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.844 0.038 0.745 3e-70
350413109 3622 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.913 0.046 0.692 1e-69
350413107 3658 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.913 0.046 0.692 1e-69
340709163 4082 PREDICTED: LOW QUALITY PROTEIN: dystroph 0.844 0.038 0.739 2e-69
380022121 4111 PREDICTED: LOW QUALITY PROTEIN: dystroph 0.930 0.042 0.715 2e-69
328792482 4079 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.844 0.038 0.739 3e-69
350413111 4082 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.844 0.038 0.733 6e-69
328702835 2412 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.919 0.070 0.715 1e-67
328702837 2285 PREDICTED: dystrophin, isoforms A/C/F/G/ 0.919 0.074 0.715 1e-67
>gi|242011413|ref|XP_002426445.1| hypothetical protein Phum_PHUM253780 [Pediculus humanus corporis] gi|212510550|gb|EEB13707.1| hypothetical protein Phum_PHUM253780 [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 131/188 (69%), Positives = 156/188 (82%), Gaps = 7/188 (3%)

Query: 5   KITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYT 64
           K+TKLREHWDETN+KV+ RK QLD+ML DSQRY+AKRQEVD WLTRME R++RM  VG+T
Sbjct: 25  KVTKLREHWDETNSKVLQRKAQLDAMLGDSQRYEAKRQEVDAWLTRMETRLERMGTVGHT 84

Query: 65  ADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNN 124
           ADVLE QLREQKS HA+LHQ+K  + LFN LTQKLI+VYQ DDTT+VKK+TEQ+NQRYNN
Sbjct: 85  ADVLEAQLREQKSFHAELHQYKYHVELFNTLTQKLIAVYQQDDTTKVKKMTEQINQRYNN 144

Query: 125 LNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDR-------QAEK 177
           LNTSI+NRGK+L+SAM+SL NFD+SID FLAWLSE ES++E VE + DR        A +
Sbjct: 145 LNTSIVNRGKSLHSAMNSLHNFDRSIDKFLAWLSETESSLEGVEADVDRLGTRRDQAALR 204

Query: 178 QSTPLLKV 185
           Q  P +KV
Sbjct: 205 QLLPRIKV 212

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383862415|ref|XP_003706679.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350413109|ref|XP_003489882.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350413107|ref|XP_003489881.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340709163|ref|XP_003393182.1| PREDICTED: LOW QUALITY PROTEIN: dystrophin, isoforms A/C/F/G/H-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380022121|ref|XP_003694902.1| PREDICTED: LOW QUALITY PROTEIN: dystrophin, isoforms A/C/F/G/H-like [Apis florea] Back     alignment and taxonomy information
>gi|328792482|ref|XP_003251732.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350413111|ref|XP_003489883.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 3 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328702835|ref|XP_001946850.2| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328702837|ref|XP_003242021.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
FB|FBgn0260003 3598 Dys "Dystrophin" [Drosophila m 0.908 0.046 0.585 2.7e-49
UNIPROTKB|F1NI74 3653 Gga.55479 "Uncharacterized pro 0.978 0.049 0.315 6.7e-22
UNIPROTKB|F1NI75 3653 Gga.55479 "Uncharacterized pro 0.978 0.049 0.315 6.7e-22
UNIPROTKB|F5GZY3 1115 DMD "Dystrophin" [Homo sapiens 0.935 0.156 0.293 2.1e-20
UNIPROTKB|E7EQR9 1133 DMD "Dystrophin" [Homo sapiens 0.935 0.153 0.293 2.1e-20
UNIPROTKB|E7EQS5 1225 DMD "Dystrophin" [Homo sapiens 0.935 0.142 0.293 2.4e-20
UNIPROTKB|F8VX32 1230 DMD "Dystrophin" [Homo sapiens 0.935 0.141 0.293 2.4e-20
UNIPROTKB|E7ESB2 1243 DMD "Dystrophin" [Homo sapiens 0.935 0.139 0.293 2.4e-20
UNIPROTKB|H0Y304 1386 DMD "Dystrophin" [Homo sapiens 0.935 0.125 0.293 2.8e-20
UNIPROTKB|H0Y8D5 1424 DMD "Dystrophin" [Homo sapiens 0.935 0.122 0.293 2.9e-20
FB|FBgn0260003 Dys "Dystrophin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 532 (192.3 bits), Expect = 2.7e-49, P = 2.7e-49
 Identities = 99/169 (58%), Positives = 133/169 (78%)

Query:     5 KITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYT 64
             K+T+LREHWDET+  V+ R  QL +MLSDSQR++AKR E++ WL RME R +RM  +  T
Sbjct:  2339 KVTRLREHWDETSQCVLQRAAQLKNMLSDSQRFEAKRLELEKWLARMEQRAERMGTIATT 2398

Query:    65 ADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNN 124
             AD+LE Q +EQKS HA+LHQ KQ   +FN+LTQKLI+VY +DDTTR+KK+TE +NQRY N
Sbjct:  2399 ADILEAQQKEQKSFHAELHQNKQHFDIFNELTQKLIAVYPNDDTTRIKKMTEVINQRYAN 2458

Query:   125 LNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDR 173
             LN+ +INRGK L++A+ SLQ+FD+++D FLA+LSE E+  E  E + +R
Sbjct:  2459 LNSGVINRGKQLHAAVHSLQSFDRAMDQFLAFLSETETLCENAESDIER 2507
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0005856 "cytoskeleton" evidence=ISS
GO:0005198 "structural molecule activity" evidence=ISS
GO:0008307 "structural constituent of muscle" evidence=ISS
GO:0016010 "dystrophin-associated glycoprotein complex" evidence=ISS;NAS;IPI
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0003779 "actin binding" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0007517 "muscle organ development" evidence=ISS;IMP
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0007274 "neuromuscular synaptic transmission" evidence=IDA
GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA
GO:0046716 "muscle cell homeostasis" evidence=IMP
GO:0050699 "WW domain binding" evidence=IPI
GO:0030010 "establishment of cell polarity" evidence=IMP
GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP
GO:0046928 "regulation of neurotransmitter secretion" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
UNIPROTKB|F1NI74 Gga.55479 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NI75 Gga.55479 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F5GZY3 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQR9 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQS5 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8VX32 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7ESB2 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y304 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y8D5 DMD "Dystrophin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VDW6DMDA_DROMENo assigned EC number0.58570.90860.0469yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 4e-11
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 5e-10
smart00150101 smart00150, SPEC, Spectrin repeats 2e-07
pfam00435105 pfam00435, Spectrin, Spectrin repeat 2e-05
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information 
 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 35  QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
           Q++     E++ WL+  E  +   +      + +E  L++ +++ A+L   ++++   N+
Sbjct: 3   QQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNE 61

Query: 95  LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFL 154
           L ++LI    H D   +++  E++NQR+  L      R + L  A+   Q F  + D+  
Sbjct: 62  LGEQLIEEG-HPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA-DDLE 119

Query: 155 AWLSEAESTME 165
            WL E E+ + 
Sbjct: 120 QWLEEKEAALA 130

Length = 213
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats Back     alignment and domain information
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 186
KOG0517|consensus 2473 99.8
KOG0517|consensus 2473 99.77
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.76
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.74
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 99.68
smart00150101 SPEC Spectrin repeats. 99.66
KOG0040|consensus 2399 99.63
KOG0040|consensus 2399 99.58
KOG4286|consensus 966 99.51
KOG4286|consensus 966 99.15
KOG4240|consensus 1025 95.99
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 93.06
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 92.84
KOG0994|consensus1758 91.84
PRK04863 1486 mukB cell division protein MukB; Provisional 89.74
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 89.69
PF04912388 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit 89.33
COG0497 557 RecN ATPase involved in DNA repair [DNA replicatio 87.8
PF08580 683 KAR9: Yeast cortical protein KAR9; InterPro: IPR01 82.61
PRK11637 428 AmiB activator; Provisional 81.8
PRK04863 1486 mukB cell division protein MukB; Provisional 81.55
KOG0035|consensus 890 81.5
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 80.99
PF07304157 SRA1: Steroid receptor RNA activator (SRA1); Inter 80.27
>KOG0517|consensus Back     alignment and domain information 
Probab=99.80  E-value=9e-18  Score=153.48  Aligned_cols=162  Identities=16%  Similarity=0.301  Sum_probs=152.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q psy3215           1 MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA   80 (186)
Q Consensus         1 ~i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~   80 (186)
                      .|+.+++.|..+|..|+..+..|+..|+++...|+ |..++++.+.||.+.|..+++. ..|.|+.++-..+.+||+|+.
T Consensus       600 vi~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~-F~~d~~EeEaWlkEkeqi~~sa-~~g~DLs~v~~ll~kHKalE~  677 (2473)
T KOG0517|consen  600 VIQERVAHLEQCYQELVELAAARRARLEESRRLWQ-FLWDVEEEEAWLKEKEQILSSA-DTGRDLSSVLRLLQKHKALED  677 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999998 9999999999999999988766 488999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215          81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA  160 (186)
Q Consensus        81 ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~  160 (186)
                      ||..|.+.+..+...|..|+..+++ .+..|..++..+..+|+.|...+..|+++|+++. .++||+.+.++..+||.++
T Consensus       678 E~~~~~a~~~~~~~~G~~Lvae~~p-g~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~-~~~QffaDAdd~~sWl~d~  755 (2473)
T KOG0517|consen  678 EMRGRDAHLKQMIREGEELVAEGHP-GSDQIQERAAEIREQWQRLEALVAGRGRRLQEAR-ELYQFFADADDAESWLRDA  755 (2473)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHH
Confidence            9999999999999999999998865 5668999999999999999999999999999996 5789999999999999998


Q ss_pred             HhHhhh
Q psy3215         161 ESTMEC  166 (186)
Q Consensus       161 e~~L~~  166 (186)
                      -..+++
T Consensus       756 ~rlvss  761 (2473)
T KOG0517|consen  756 LRLVSS  761 (2473)
T ss_pred             HHhccc
Confidence            887766

>KOG0517|consensus Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] Back     alignment and domain information
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 1e-16
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 4e-12
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 2e-11
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 4e-16
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 2e-08
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 2e-15
3edv_A 323 Spectrin beta chain, brain 1; spectrin repeat, coi 4e-10
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 4e-09
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 1e-14
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-13
3kbt_A 326 Beta-I spectrin, spectrin beta chain, erythrocyte; 3e-12
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 2e-10
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-13
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-08
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 5e-13
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 8e-12
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 7e-11
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 2e-11
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 6e-09
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 1e-10
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 7e-10
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 3e-10
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 3e-07
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 5e-09
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 8e-05
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 7e-08
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 2e-07
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 1e-05
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 4e-05
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 4e-05
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 30  MLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQI 89
           M +  Q ++   ++ D WL+ +E  +   +  G     +   L++ + + AD+   + ++
Sbjct: 1   MANKQQNFNTGIKDFDFWLSEVEALLASED-YGKDLASVNNLLKKHQLLEADISAHEDRL 59

Query: 90  VLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKS 149
              N     L++     DT++VK   E +N R+  + +    R   LN +   L  F + 
Sbjct: 60  KDLNSQADSLMTS-SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH-RLHQFFRD 117

Query: 150 IDNFLAWLSEAESTMECVEVETD 172
           +D+  +W+ E +  +   +   D
Sbjct: 118 MDDEESWIKEKKLLVSSEDYGRD 140
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.92
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.91
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.9
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.89
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.87
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.87
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.86
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.86
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.85
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.84
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.84
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.84
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.83
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.83
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.81
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.81
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.81
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.8
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.8
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.8
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.79
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.78
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.77
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.76
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.76
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.76
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.75
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.75
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.73
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.73
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.69
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.68
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.67
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.6
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.42
3r6n_A450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.41
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.33
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.23
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.16
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 99.05
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 98.62
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 98.6
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 98.57
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 98.47
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 98.28
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 96.15
3uun_A119 Dystrophin; triple helical, cell structure and sta 92.98
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 91.79
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 83.03
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 82.0
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
Probab=99.92  E-value=4.5e-23  Score=165.99  Aligned_cols=162  Identities=15%  Similarity=0.273  Sum_probs=151.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215           2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD   81 (186)
Q Consensus         2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e   81 (186)
                      |+.++..|+.+|+.|+..+..|...|+.++. ...|..++.++..||.+++..+.  .|+|.|+..++.++++|+.|+.+
T Consensus        84 i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~-~~~f~~~~~e~~~Wl~~k~~~l~--~~~~~d~~~v~~l~~~h~~~~~~  160 (323)
T 3edv_A           84 IAEWKDGLNEAWADLLELIDTRTQILAASYE-LHKFYHDAKEIFGRIQDKHKKLP--EELGRDQNTVETLQRMHTTFEHD  160 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCC--CCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc--cccccChHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999994 46699999999999999998874  57889999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3215          82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAE  161 (186)
Q Consensus        82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e  161 (186)
                      |..+++.|..+...|..|...+++..+..|..++..|+.+|..|+..+..|..+|+.+.. +++|..+++++..||.+++
T Consensus       161 l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~-~~~F~~~~~~l~~Wl~~~~  239 (323)
T 3edv_A          161 IQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGD-KFRFFSMVRDLMLWMEDVI  239 (323)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998765567899999999999999999999999999999985 7899999999999999999


Q ss_pred             hHhhhh
Q psy3215         162 STMECV  167 (186)
Q Consensus       162 ~~L~~~  167 (186)
                      ..+.+.
T Consensus       240 ~~l~~~  245 (323)
T 3edv_A          240 RQIEAQ  245 (323)
T ss_dssp             HHHHTC
T ss_pred             HHHhCC
Confidence            998763
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 186
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 5e-08
d1s35a1106 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human ( 2e-06
d1u5pa1110 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke 4e-06
d1owaa_156 a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sap 8e-05
d2spca_107 a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. 7e-04
d1u5pa2101 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke 0.001
d1cuna2104 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken 0.001
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 19/123 (15%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 21  MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA 80
           + R  +L+ +    +++  K    + W    E  + + +    +   +   LR+ ++  +
Sbjct: 6   IRRLERLEHLA---EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFES 62

Query: 81  DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140
           DL   + ++     + Q+L  +  + D   V    +++  +++ L T    R +AL    
Sbjct: 63  DLAAHQDRVEQIAAIAQELNELD-YHDAVNVNDRCQKICDQWDRLGTLTQKRREALERME 121

Query: 141 SSL 143
             L
Sbjct: 122 KLL 124
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110 Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107 Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101 Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.82
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.77
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.76
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.75
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.72
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.7
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.63
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.62
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 98.17
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 97.03
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 92.16
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 91.67
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 90.98
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 90.69
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 90.41
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 88.91
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 86.54
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 84.44
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-20  Score=134.62  Aligned_cols=132  Identities=11%  Similarity=0.209  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215           2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD   81 (186)
Q Consensus         2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e   81 (186)
                      |++++..|+.+|+.|+..+.+|+.+|++++.. +.|..+++++..||.+++..+.+.  .+.|+..++.++++|+.|+.+
T Consensus        24 i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~~~-~~F~~~~~~l~~Wl~e~e~~~~~~--~~~d~~~~~~~~~~h~~l~~e  100 (156)
T d1owaa_          24 IQERRQEVLTRYQSFKERVAERGQKLEDSYHL-QVFKRDADDLGKWIMEKVNILTDK--SYEDPTNIQGKYQKHQSLEAE  100 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCSCSCHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHCCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccc--cccCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999864 679999999999999999888753  457888999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215          82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALN  137 (186)
Q Consensus        82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le  137 (186)
                      |..+++.+..+...|..|...++ .++..|+.+++.|+.+|..|+..+.+|..+|.
T Consensus       101 i~~~~~~~~~l~~~g~~L~~~~~-~~~~~i~~~l~~l~~~W~~L~~~~~~R~~~L~  155 (156)
T d1owaa_         101 VQTKSRLMSELEKTREERFTMGH-SAHEETKAHIEELRHLWDLLLELTLEKGDQLL  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999988765 47899999999999999999999999999884
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure