Psyllid ID: psy3219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MRRTLGPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPNH
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHcccccccccHHHcccccccccccEEccccccccEEEEEEEEcccccccccHHHHHcccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcHHHHHHHHHcccccccHHHHHHHHHHHcccccccEEcccccccEEEEEEEcHHccccHHHHHcEEccccccccccccccEEEcccEEcccc
Coil and Loop (DISEMBL)
mrrtlgpypqQAVHFLSWLqqepqsivwlpVLHRLSAAESAKHQAkcnickecpiigfryrclkcfnfdmcqtcffqgkkaknhklthpmqeycttellpnh
Flexible Loop (DISEMBL)
MRRTLGPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMqeycttellpnh
Low Complexity Region (SEG)
MRRTLGPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPNH
Disordered region (IsUnstruct)
**********QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKL******YC********
Disordered Region (DISOPRED)
************VHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYC*T******
Disordered Region (DISEMBL)
MRRTLGPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSA********KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPNH
Disordered Region (DISPRO)
*****GPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRTLGPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q9VDW6	3598	Dystrophin, isoforms A/C/	yes	N/A	0.813	0.023	0.855	1e-40
Q0KI50	1854	Dystrophin, isoform D OS=	no	N/A	0.813	0.044	0.855	7e-40
Q9VDW3	1669	Dystrophin, isoform B OS=	no	N/A	0.813	0.049	0.855	2e-39
Q7YU29	1051	Dystrophin, isoform E OS=	no	N/A	0.813	0.078	0.855	4e-38
P11533	3660	Dystrophin OS=Gallus gall	yes	N/A	0.833	0.023	0.717	3e-35
O97592	3680	Dystrophin OS=Canis famil	yes	N/A	0.833	0.023	0.717	3e-35
Q5GN48	3674	Dystrophin OS=Sus scrofa	yes	N/A	0.833	0.023	0.717	3e-35
P11531	3678	Dystrophin OS=Mus musculu	yes	N/A	0.833	0.023	0.717	3e-35
P11532	3685	Dystrophin OS=Homo sapien	no	N/A	0.833	0.023	0.717	4e-35
P46939	3433	Utrophin OS=Homo sapiens	no	N/A	0.784	0.023	0.725	7e-35

>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1 SV=3

 Score =  164 bits (415), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/83 (85%), Positives = 76/83 (91%)

Query: 14   HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
            HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ 
Sbjct: 3079 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 3138

Query: 74   CFFQGKKAKNHKLTHPMQEYCTT 96
            CFF G+ AKNHKLTHPM EYCTT
Sbjct: 3139 CFFFGRNAKNHKLTHPMHEYCTT 3161

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. Both det and Dg are required for maintenance of early dpp signaling in the presumptive crossvein. Isoform A is not required to maintain muscle integrity, but plays a role in neuromuscular homeostasis by regulating neurotransmitter release. May play a role in anchoring the cytoskeleton to the plasma membrane.
Drosophila melanogaster (taxid: 7227)

>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1

 Score =  162 bits (409), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/83 (85%), Positives = 76/83 (91%)

Query: 14   HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
            HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ 
Sbjct: 1436 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 1495

Query: 74   CFFQGKKAKNHKLTHPMQEYCTT 96
            CFF G+ AKNHKLTHPM EYCTT
Sbjct: 1496 CFFFGRNAKNHKLTHPMHEYCTT 1518

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3

 Score =  160 bits (406), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/83 (85%), Positives = 76/83 (91%)

Query: 14   HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
            HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ 
Sbjct: 1251 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 1310

Query: 74   CFFQGKKAKNHKLTHPMQEYCTT 96
            CFF G+ AKNHKLTHPM EYCTT
Sbjct: 1311 CFFFGRNAKNHKLTHPMHEYCTT 1333

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q7YU29|DMDE_DROME Dystrophin, isoform E OS=Drosophila melanogaster GN=Dys PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 76/83 (91%)

Query: 14  HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
           HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ 
Sbjct: 633 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 692

Query: 74  CFFQGKKAKNHKLTHPMQEYCTT 96
           CFF G+ AKNHKLTHPM EYCTT
Sbjct: 693 CFFFGRNAKNHKLTHPMHEYCTT 715

Specifically required for survival and integrity of the larval musculature: the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3274 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3333

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3334 CQSCFFSGRVAKGHKMHYPMVEYCT 3358

May play a role in anchoring the cytoskeleton to the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3272 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3331

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3332 CQSCFFSGRVAKGHKMHYPMVEYCT 3356

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Canis familiaris (taxid: 9615)

>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3266 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3325

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3326 CQSCFFSGRVAKGHKMHYPMVEYCT 3350

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Sus scrofa (taxid: 9823)

>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3270 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3329

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3330 CQSCFFSGRVAKGHKMHYPMVEYCT 3354

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Mus musculus (taxid: 10090)

>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3

 Score =  146 bits (368), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3277 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3336

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3337 CQSCFFSGRVAKGHKMHYPMVEYCT 3361

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Homo sapiens (taxid: 9606)

>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2

 Score =  145 bits (366), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/80 (72%), Positives = 70/80 (87%)

Query: 15   FLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTC 74
            F+ W+  EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPI+GFRYR LK FN+D+CQ+C
Sbjct: 3038 FIDWMHLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIVGFRYRSLKHFNYDVCQSC 3097

Query: 75   FFQGKKAKNHKLTHPMQEYC 94
            FF G+ AK HKL +PM EYC
Sbjct: 3098 FFSGRTAKGHKLHYPMVEYC 3117

May play a role in anchoring the cytoskeleton to the plasma membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
328792482	4079	PREDICTED: dystrophin, isoforms A/C/F/G/	0.833	0.020	0.929	1e-46
380022121	4111	PREDICTED: LOW QUALITY PROTEIN: dystroph	0.833	0.020	0.929	1e-46
340709163	4082	PREDICTED: LOW QUALITY PROTEIN: dystroph	0.833	0.020	0.917	4e-46
383862415	4129	PREDICTED: dystrophin, isoforms A/C/F/G/	0.833	0.020	0.917	4e-46
350413111	4082	PREDICTED: dystrophin, isoforms A/C/F/G/	0.833	0.020	0.917	4e-46
350413107	3658	PREDICTED: dystrophin, isoforms A/C/F/G/	0.833	0.023	0.917	8e-46
350413109	3622	PREDICTED: dystrophin, isoforms A/C/F/G/	0.833	0.023	0.917	9e-46
242011409	952	dystrophin, putative [Pediculus humanus	0.941	0.100	0.785	2e-44
332029826	733	Dystrophin, isoforms A/C/F/G/H [Acromyrm	0.843	0.117	0.906	2e-43
322785410	761	hypothetical protein SINV_11293 [Solenop	0.843	0.113	0.906	3e-43

>gi|328792482|ref|XP_003251732.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like [Apis mellifera]

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/85 (92%), Positives = 82/85 (96%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PIIGFRYRCLKCFNFDM
Sbjct: 3674 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPIIGFRYRCLKCFNFDM 3733

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3734 CQNCFFSGRKAKNHKLTHPMQEYCT 3758

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022121|ref|XP_003694902.1| PREDICTED: LOW QUALITY PROTEIN: dystrophin, isoforms A/C/F/G/H-like [Apis florea]

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/85 (92%), Positives = 82/85 (96%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PIIGFRYRCLKCFNFDM
Sbjct: 3706 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPIIGFRYRCLKCFNFDM 3765

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3766 CQNCFFSGRKAKNHKLTHPMQEYCT 3790

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709163|ref|XP_003393182.1| PREDICTED: LOW QUALITY PROTEIN: dystrophin, isoforms A/C/F/G/H-like [Bombus terrestris]

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PI GFRYRCLKCFNFDM
Sbjct: 3677 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPITGFRYRCLKCFNFDM 3736

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3737 CQNCFFSGRKAKNHKLTHPMQEYCT 3761

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862415|ref|XP_003706679.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like [Megachile rotundata]

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PI GFRYRCLKCFNFDM
Sbjct: 3724 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPITGFRYRCLKCFNFDM 3783

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3784 CQNCFFSGRKAKNHKLTHPMQEYCT 3808

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413111|ref|XP_003489883.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 3 [Bombus impatiens]

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PI GFRYRCLKCFNFDM
Sbjct: 3677 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPITGFRYRCLKCFNFDM 3736

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3737 CQNCFFSGRKAKNHKLTHPMQEYCT 3761

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413107|ref|XP_003489881.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 1 [Bombus impatiens]

 Score =  187 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PI GFRYRCLKCFNFDM
Sbjct: 3253 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPITGFRYRCLKCFNFDM 3312

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3313 CQNCFFSGRKAKNHKLTHPMQEYCT 3337

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413109|ref|XP_003489882.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 2 [Bombus impatiens]

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 11   QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
            +AVHFLSWLQQEPQS+VWLPVLHRLSAAESAKHQAKCNICKE PI GFRYRCLKCFNFDM
Sbjct: 3253 EAVHFLSWLQQEPQSMVWLPVLHRLSAAESAKHQAKCNICKEYPITGFRYRCLKCFNFDM 3312

Query: 71   CQTCFFQGKKAKNHKLTHPMQEYCT 95
            CQ CFF G+KAKNHKLTHPMQEYCT
Sbjct: 3313 CQNCFFSGRKAKNHKLTHPMQEYCT 3337

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011409|ref|XP_002426443.1| dystrophin, putative [Pediculus humanus corporis] gi|212510548|gb|EEB13705.1| dystrophin, putative [Pediculus humanus corporis]

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/98 (78%), Positives = 86/98 (87%), Gaps = 2/98 (2%)

Query: 1   MRRTLGPYPQQ--AVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGF 58
           +R   GP  +Q  AVHFLSW+QQEPQS+VWLPVLHRL+AAE A+HQAKCNICK+ PI+GF
Sbjct: 568 VRSCFGPDKEQIEAVHFLSWVQQEPQSLVWLPVLHRLAAAEGARHQAKCNICKDYPILGF 627

Query: 59  RYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTT 96
           RYRCLKCFNFDMCQ CFF G+KAKNHKL HPMQEYCTT
Sbjct: 628 RYRCLKCFNFDMCQNCFFSGRKAKNHKLNHPMQEYCTT 665

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029826|gb|EGI69695.1| Dystrophin, isoforms A/C/F/G/H [Acromyrmex echinatior]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 82/86 (95%)

Query: 11  QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
           +AVHFLSWLQQEPQS+VWLPVLHRLSAAE+AKHQAKCNICKE PIIGFRYRCLKCFNFDM
Sbjct: 329 EAVHFLSWLQQEPQSMVWLPVLHRLSAAETAKHQAKCNICKEYPIIGFRYRCLKCFNFDM 388

Query: 71  CQTCFFQGKKAKNHKLTHPMQEYCTT 96
           CQ CFF G+KAKNHKLTHPMQEYCT 
Sbjct: 389 CQNCFFSGRKAKNHKLTHPMQEYCTA 414

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785410|gb|EFZ12083.1| hypothetical protein SINV_11293 [Solenopsis invicta]

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 82/86 (95%)

Query: 11  QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
           +AVHFLSWLQQEPQS+VWLPVLHRLSAAE+AKHQAKCNICKE PIIGFRYRCLKCFNFDM
Sbjct: 346 EAVHFLSWLQQEPQSMVWLPVLHRLSAAETAKHQAKCNICKEYPIIGFRYRCLKCFNFDM 405

Query: 71  CQTCFFQGKKAKNHKLTHPMQEYCTT 96
           CQ CFF G+KAKNHKLTHPMQEYCT 
Sbjct: 406 CQNCFFSGRKAKNHKLTHPMQEYCTA 431

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0260003	3598	Dys "Dystrophin" [Drosophila m	0.813	0.023	0.855	2.1e-37
UNIPROTKB|H0Y3E8	238	DMD "Dystrophin" [Homo sapiens	0.833	0.357	0.717	4.1e-33
UNIPROTKB|I3LPH8	488	DMD "Dystrophin" [Sus scrofa (	0.833	0.174	0.717	4.1e-33
UNIPROTKB|F1LQ04	507	Dmd "Dystrophin" [Rattus norve	0.833	0.167	0.717	4.1e-33
UNIPROTKB|B4DSV7	525	DMD "Dystrophin" [Homo sapiens	0.833	0.161	0.717	4.3e-33
UNIPROTKB|F1PKV3	526	DMD "Dystrophin" [Canis lupus	0.833	0.161	0.717	4.4e-33
UNIPROTKB|A8WFL6	604	DMD "Uncharacterized protein"	0.833	0.140	0.717	1.4e-32
UNIPROTKB|F1PR55	616	DMD "Dystrophin" [Canis lupus	0.833	0.137	0.717	1.6e-32
UNIPROTKB|F1LN35	622	Dmd "Dystrophin" [Rattus norve	0.833	0.136	0.717	1.6e-32
UNIPROTKB|H0Y337	251	UTRN "Utrophin" [Homo sapiens	0.843	0.342	0.689	2.3e-32

FB|FBgn0260003 Dys "Dystrophin" [Drosophila melanogaster (taxid:7227)]

 Score = 420 (152.9 bits), Expect = 2.1e-37, P = 2.1e-37
 Identities = 71/83 (85%), Positives = 76/83 (91%)

Query:    14 HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
             HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ 
Sbjct:  3079 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 3138

Query:    74 CFFQGKKAKNHKLTHPMQEYCTT 96
             CFF G+ AKNHKLTHPM EYCTT
Sbjct:  3139 CFFFGRNAKNHKLTHPMHEYCTT 3161

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005198 "structural molecule activity" evidence=ISS

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=ISS;NAS;IPI

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007517 "muscle organ development" evidence=ISS;IMP

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0007274 "neuromuscular synaptic transmission" evidence=IDA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0050699 "WW domain binding" evidence=IPI

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0046928 "regulation of neurotransmitter secretion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H0Y3E8 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:    67 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 126

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   127 CQSCFFSGRVAKGHKMHYPMVEYCT 151

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3LPH8 DMD "Dystrophin" [Sus scrofa (taxid:9823)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   190 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 249

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   250 CQSCFFSGRVAKGHKMHYPMVEYCT 274

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1LQ04 Dmd "Dystrophin" [Rattus norvegicus (taxid:10116)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   209 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 268

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   269 CQSCFFSGRVAKGHKMHYPMVEYCT 293

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B4DSV7 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 361 (132.1 bits), Expect = 4.3e-33, P = 4.3e-33
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   209 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 268

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   269 CQSCFFSGRVAKGHKMHYPMVEYCT 293

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PKV3 DMD "Dystrophin" [Canis lupus familiaris (taxid:9615)]

 Score = 361 (132.1 bits), Expect = 4.4e-33, P = 4.4e-33
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   190 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 249

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   250 CQSCFFSGRVAKGHKMHYPMVEYCT 274

GO:0048747 "muscle fiber development" evidence=IEA

GO:0046716 "muscle cell homeostasis" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0044306 "neuron projection terminus" evidence=IEA

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0030055 "cell-substrate junction" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0021629 "olfactory nerve structural organization" evidence=IEA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=IEA

GO:0014904 "myotube cell development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0008065 "establishment of blood-nerve barrier" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0002162 "dystroglycan binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0060857 "establishment of glial blood-brain barrier" evidence=IEA

GO:0051647 "nucleus localization" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

UNIPROTKB|A8WFL6 DMD "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   209 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 268

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   269 CQSCFFSGRVAKGHKMHYPMVEYCT 293

GO:0060857 "establishment of glial blood-brain barrier" evidence=IEA

GO:0051647 "nucleus localization" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IEA

GO:0046716 "muscle cell homeostasis" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0044306 "neuron projection terminus" evidence=IEA

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0030055 "cell-substrate junction" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0021629 "olfactory nerve structural organization" evidence=IEA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=IEA

GO:0014904 "myotube cell development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0008065 "establishment of blood-nerve barrier" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0002162 "dystroglycan binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PR55 DMD "Dystrophin" [Canis lupus familiaris (taxid:9615)]

 Score = 361 (132.1 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   190 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 249

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   250 CQSCFFSGRVAKGHKMHYPMVEYCT 274

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1LN35 Dmd "Dystrophin" [Rattus norvegicus (taxid:10116)]

 Score = 361 (132.1 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query:    11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
             +A  FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct:   209 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 268

Query:    71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
             CQ+CFF G+ AK HK+ +PM EYCT
Sbjct:   269 CQSCFFSGRVAKGHKMHYPMVEYCT 293

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H0Y337 UTRN "Utrophin" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 60/87 (68%), Positives = 74/87 (85%)

Query:     9 PQQAV-HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFN 67
             P+ +V  F+ W+  EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPI+GFRYR LK FN
Sbjct:    75 PEISVKEFIDWMHLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIVGFRYRSLKHFN 134

Query:    68 FDMCQTCFFQGKKAKNHKLTHPMQEYC 94
             +D+CQ+CFF G+ AK HKL +PM EYC
Sbjct:   135 YDVCQSCFFSGRTAKGHKLHYPMVEYC 161

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5GN48	DMD_PIG	No assigned EC number	0.7176	0.8333	0.0231	yes	N/A
Q9TW65	DMD_CAEEL	No assigned EC number	0.6375	0.7843	0.0217	yes	N/A
O97592	DMD_CANFA	No assigned EC number	0.7176	0.8333	0.0230	yes	N/A
Q9VDW6	DMDA_DROME	No assigned EC number	0.8554	0.8137	0.0230	yes	N/A
P11531	DMD_MOUSE	No assigned EC number	0.7176	0.8333	0.0231	yes	N/A
P11533	DMD_CHICK	No assigned EC number	0.7176	0.8333	0.0232	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
cd02334	49	cd02334, ZZ_dystrophin, Zinc finger, ZZ type	5e-26
pfam00569	46	pfam00569, ZZ, Zinc finger, ZZ type	2e-16
smart00291	44	smart00291, ZnF_ZZ, Zinc-binding domain, present i	1e-12
pfam09069	89	pfam09069, efhand_2, EF-hand	2e-10
cd02338	49	cd02338, ZZ_PCMF_like, Zinc finger, ZZ type	2e-09
cd02249	46	cd02249, ZZ, Zinc finger, ZZ type	2e-09
cd02339	45	cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type	2e-07
cd02335	49	cd02335, ZZ_ADA2, Zinc finger, ZZ type	2e-06
cd02343	48	cd02343, ZZ_EF, Zinc finger, ZZ type	4e-06
cd02344	45	cd02344, ZZ_HERC2, Zinc finger, ZZ type	6e-05
cd02340	43	cd02340, ZZ_NBR1_like, Zinc finger, ZZ type	7e-05
cd02345	49	cd02345, ZZ_dah, Zinc finger, ZZ type	2e-04
cd02341	48	cd02341, ZZ_ZZZ3, Zinc finger, ZZ type	2e-04
COG5114	432	COG5114, COG5114, Histone acetyltransferase comple	0.003

>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type

 Score = 90.9 bits (226), Expect = 5e-26
 Identities = 36/49 (73%), Positives = 44/49 (89%)

Query: 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
          AKCNICKE PI GFRYRCLKCFN+D+CQ+CFF G+ +K+HK +HPM+EY
Sbjct: 1  AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKEY 49

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan. Length = 49

>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 41 AKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKL 86
            H   CNICKECPIIGFRY CL+CF++D+CQ+CFF G+KA  HK+
Sbjct: 1  IHHVYTCNICKECPIIGFRYHCLRCFDYDLCQSCFFTGRKAGGHKM 46

Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure. Length = 46

>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein

 Score = 56.7 bits (137), Expect = 1e-12
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42 KHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK 85
           H   C+ C + PI+G RY CL C ++D+CQ+CF +G     H 
Sbjct: 2  HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGSAGGEHS 44

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy. Length = 44

>gnl|CDD|149946 pfam09069, efhand_2, EF-hand

 Score = 51.9 bits (125), Expect = 2e-10
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLS 36
          +  HFL WL  EPQS+VWLPVLHRL+
Sbjct: 64 ELNHFLDWLMLEPQSLVWLPVLHRLA 89

Members of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (pfam00397), enhancing dystroglycan binding. Length = 89

>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type

 Score = 48.9 bits (117), Expect = 2e-09
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
          C+ C +    G RY+CL C+++D+C  C+  G   + H   HPMQ
Sbjct: 3  CDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQ 47

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination. Length = 49

>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type

 Score = 48.6 bits (116), Expect = 2e-09
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
          C+ C + PI+G RY CL C +FD+C +C+ +GKK   H   H   E 
Sbjct: 3  CDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKG--HPPDHSFTEI 46

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. Length = 46

>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type

 Score = 43.6 bits (103), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
          C+ C++  IIG R++C +C N+D+C TC+   K    H L H    Y
Sbjct: 3  CDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDK----HDLEHRFYRY 45

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. Length = 45

>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
           C+ C +      R +C +C +FD+C  CF  G +   H+  H  +
Sbjct: 2  HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYR 47

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 49

>gnl|CDD|239083 cd02343, ZZ_EF, Zinc finger, ZZ type

 Score = 40.0 bits (93), Expect = 4e-06
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 59 RYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
          RYRCL+C + D+C+TCF  G K + H+  H M
Sbjct: 14 RYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEM 45

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 48

>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type

 Score = 37.2 bits (86), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH 84
           C+ C+  PI G R++C  C +FD C+ CF   K    H
Sbjct: 2  TCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRH 40

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 45

>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type

 Score = 36.9 bits (86), Expect = 7e-05
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
            C+ C+  PI+G RY+CL C ++D+C++C     +AK     H M
Sbjct: 1  VICDGCQG-PIVGVRYKCLVCPDYDLCESC-----EAKGVHPEHAM 40

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. Length = 43

>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQE 92
          C+ C++  I G R+ C  C ++ +C  C+ +G++ K H   H M E
Sbjct: 3  CSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYE 48

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila. . Length = 49

>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 46 KCNICKECPIIGFRYRCLKCFN--FDMCQTCFFQG 78
          KC+ C   PI G RY C +C +  FD+CQ C  +G
Sbjct: 2  KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 48

>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
          C++C          +C +C   D+C  CF  G +   H   H 
Sbjct: 8  CDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHG 50

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG4286|consensus	966		99.9
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	99.84
KOG4301|consensus	434		99.81
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	99.77
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	99.76
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	99.74
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	99.73
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	99.73
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	99.7
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	99.69
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	99.67
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	99.61
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	99.59
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	99.54
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	99.51
KOG1280|consensus	381		99.48
KOG4582|consensus	278		99.41
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	99.18
KOG0457|consensus	438		98.97
PF09069	90	EF-hand_3: EF-hand; InterPro: IPR015154 Like other	98.76
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	98.71
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	98.69
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	96.38
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	94.42
PF02207	71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	87.3

>KOG4286|consensus

Probab=99.90  E-value=1.1e-24  Score=181.61  Aligned_cols=96  Identities=64%  Similarity=1.199  Sum_probs=92.9

Q ss_pred             CCCCcchHHHHHHHhcCCCccchhhhhhhcccccCccCceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCC
Q psy3219           6 GPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK   85 (102)
Q Consensus         6 ~~~~~~~~~f~~~~~~~p~~~~wlpll~r~~~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~   85 (102)
                      ++-.|++..|++|+-.+|+.++|||++||+...+.++|..+|++|++.||+|+||+|++|.|||+|+.||..|++++.|+
T Consensus       565 ~~pei~~~~f~dw~~~epqsmVwL~vlhRv~~aE~~kH~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk  644 (966)
T KOG4286|consen  565 NKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHK  644 (966)
T ss_pred             CCCcchHHHHHHHhccCcchhhHHHHHHHHHHHHHHHhhhhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEecCCCCCC
Q psy3219          86 LTHPMQEYCTTELLPN  101 (102)
Q Consensus        86 ~~H~~~~i~~p~s~~~  101 (102)
                      +.|||.+|.+|+++|+
T Consensus       645 ~~~pM~Ey~~~tts~~  660 (966)
T KOG4286|consen  645 MHYPMVEYCTPTTSGE  660 (966)
T ss_pred             CCCCceeeeCCCCChh
Confidence            9999999999999986

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=99.84  E-value=2.1e-21  Score=114.07  Aligned_cols=49  Identities=73%  Similarity=1.577  Sum_probs=47.0

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      +.||+|++.||.|.||+|++|.|||||+.||+.|.+++.|+++|||+++
T Consensus         1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~e~   49 (49)
T cd02334           1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKEY   49 (49)
T ss_pred             CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCeecC
Confidence            5799999999999999999999999999999999999999999999975

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>KOG4301|consensus

Probab=99.81  E-value=2.3e-21  Score=151.34  Aligned_cols=88  Identities=39%  Similarity=0.932  Sum_probs=82.9

Q ss_pred             CCcchHHHHHHHhc--CCCccchhhhhhhcccccCccCceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCC
Q psy3219           8 YPQQAVHFLSWLQQ--EPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK   85 (102)
Q Consensus         8 ~~~~~~~f~~~~~~--~p~~~~wlpll~r~~~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~   85 (102)
                      -+++||+|++-+++  +|++++|+||+||++..++|.|.+.|+.|...+|.|+||+|..|.+|.||+.||+.|+..+.|+
T Consensus       202 rKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~~g~~hs  281 (434)
T KOG4301|consen  202 RKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGHAGGSHS  281 (434)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCCCccCcceecccccchhhhHhhcCCccccchhhccccCCCCcc
Confidence            46899999999997  4677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEec
Q psy3219          86 LTHPMQEYCT   95 (102)
Q Consensus        86 ~~H~~~~i~~   95 (102)
                      .+|.|.+++.
T Consensus       282 nqh~mke~Ss  291 (434)
T KOG4301|consen  282 NQHQMKEYSS  291 (434)
T ss_pred             hHHHHHHhhc
Confidence            9999998764

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=99.77  E-value=5e-19  Score=103.80  Aligned_cols=49  Identities=35%  Similarity=0.935  Sum_probs=46.0

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      +.||+|.+.+|.|.||+|++|+|||||++||+.+.+++.|+++|+|+.+
T Consensus         1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~~   49 (49)
T cd02338           1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQCI   49 (49)
T ss_pred             CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEEC
Confidence            5799999889999999999999999999999999999999999999763

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=99.76  E-value=4.9e-19  Score=103.86  Aligned_cols=49  Identities=31%  Similarity=0.822  Sum_probs=46.1

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      ..|++|.+.+|.|.||+|++|.|||||+.||+.+.+++.|+++|+|.++
T Consensus         1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~~~   49 (49)
T cd02345           1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYEL   49 (49)
T ss_pred             CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCcccC
Confidence            4799999889999999999999999999999999999999999999864

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=99.74  E-value=1.1e-18  Score=100.77  Aligned_cols=45  Identities=33%  Similarity=0.864  Sum_probs=41.8

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      |.||+|.+.||.|.||+|++|.|||||+.||..+    .|+.+|+|.+|
T Consensus         1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~----~H~~~H~F~ri   45 (45)
T cd02344           1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTR----KHNTRHTFGRI   45 (45)
T ss_pred             CCCCCCCCCCCccCeEECCCCCCccchHHhhCCC----CcCCCCceeeC
Confidence            6899999999999999999999999999999985    78999999875

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=99.73  E-value=1.9e-18  Score=100.97  Aligned_cols=47  Identities=40%  Similarity=0.894  Sum_probs=44.0

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQE   92 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~   92 (102)
                      +.||+|++ .+.|.||||++|+|||||+.||+.|.+++.|+.+|||+-
T Consensus         1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~~   47 (48)
T cd02343           1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMVN   47 (48)
T ss_pred             CCCCCCCC-cCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCccc
Confidence            46999997 688999999999999999999999999999999999963

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=99.73  E-value=3e-18  Score=99.01  Aligned_cols=45  Identities=38%  Similarity=1.026  Sum_probs=41.5

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      +.||+|++.+|.|.||+|++|.|||||+.||..    +.|+++|+|.+|
T Consensus         1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~----~~H~~~H~f~r~   45 (45)
T cd02339           1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG----DKHDLEHRFYRY   45 (45)
T ss_pred             CCCCCCCCCCcccCeEECCCCCCccchHHHhCC----CCCCCCCCEEeC
Confidence            579999988999999999999999999999996    479999999875

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=99.70  E-value=1.1e-17  Score=97.86  Aligned_cols=46  Identities=39%  Similarity=0.883  Sum_probs=42.8

Q ss_pred             eeCCCCCCcceeeeeEeeccCC--CCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCF--NFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~--dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      +.||+|.+.||.|.||+|++|+  |||||+.||..+.   .|+.+|+|.+|
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~---~H~~~H~~~~i   48 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE---SHQEDHWLVKI   48 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC---CCCCCCceeeC
Confidence            4799999989999999999999  9999999999985   89999999875

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=99.69  E-value=1.7e-17  Score=97.10  Aligned_cols=49  Identities=27%  Similarity=0.657  Sum_probs=45.5

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      ..||+|.+.++.|.||+|++|.|||||+.||+.|.+++.|+++|+|+.+
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~~   49 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRVV   49 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEeC
Confidence            3699999988888999999999999999999999999999999999764

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=99.67  E-value=3.4e-17  Score=93.73  Aligned_cols=43  Identities=40%  Similarity=1.017  Sum_probs=39.7

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      +.||+|++ +|.|.||+|++|+|||||+.||..+    .| +.|+|.++
T Consensus         1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~----~H-~~H~f~~~   43 (43)
T cd02340           1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKG----VH-PEHAMLKI   43 (43)
T ss_pred             CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcC----CC-CCCCEEeC
Confidence            57999997 9999999999999999999999986    78 99999864

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.61  E-value=3.1e-16  Score=90.68  Aligned_cols=43  Identities=47%  Similarity=1.130  Sum_probs=33.0

Q ss_pred             CceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCC
Q psy3219          43 HQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK   85 (102)
Q Consensus        43 h~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~   85 (102)
                      +.+.||+|+..+|.|.||+|++|+|||||+.||..|.+...|+
T Consensus         3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~   45 (46)
T PF00569_consen    3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHK   45 (46)
T ss_dssp             SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSS
T ss_pred             CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcC
Confidence            4699999998899999999999999999999999986555553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02249 ZZ Zinc finger, ZZ type

Probab=99.59  E-value=9.7e-16  Score=88.45  Aligned_cols=46  Identities=43%  Similarity=1.062  Sum_probs=42.2

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEE
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY   93 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i   93 (102)
                      +.||+|.+ +|.|.||+|.+|.|||||..||..+.  +.|+.+|+|.++
T Consensus         1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~--~~H~~~H~~~~~   46 (46)
T cd02249           1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGK--KGHPPDHSFTEI   46 (46)
T ss_pred             CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCc--CCCCCCCCEeEC
Confidence            47999998 99999999999999999999999886  789999999864

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=99.54  E-value=3.1e-15  Score=85.30  Aligned_cols=34  Identities=32%  Similarity=0.734  Sum_probs=32.0

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG   78 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~   78 (102)
                      +.||+|.+.||.|.||||.+|.|||||+.||.+.
T Consensus         1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~   34 (43)
T cd02342           1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM   34 (43)
T ss_pred             CCCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence            5799999999999999999999999999999873

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=99.51  E-value=1.2e-14  Score=83.26  Aligned_cols=42  Identities=43%  Similarity=1.159  Sum_probs=37.5

Q ss_pred             cCceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCC
Q psy3219          42 KHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH   84 (102)
Q Consensus        42 ~h~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H   84 (102)
                      .+.+.|++|++ +|.|.||+|++|+|||||.+||..+.++..|
T Consensus         2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~~~~~~~h   43 (44)
T smart00291        2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGSAGGEH   43 (44)
T ss_pred             CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhCcCcCCCC
Confidence            46789999998 9999999999999999999999998665555

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>KOG1280|consensus

Probab=99.48  E-value=3e-14  Score=111.34  Aligned_cols=56  Identities=30%  Similarity=0.733  Sum_probs=52.4

Q ss_pred             cC-ceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCC
Q psy3219          42 KH-QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE   97 (102)
Q Consensus        42 ~h-~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~   97 (102)
                      .| +|.||+|.+..+.|.||||+.|.|||||..||.+|..+..|..+|||+.|..+.
T Consensus         5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~   61 (381)
T KOG1280|consen    5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRV   61 (381)
T ss_pred             CcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeecc
Confidence            35 499999999999999999999999999999999999999999999999998764

>KOG4582|consensus

Probab=99.41  E-value=2e-13  Score=104.49  Aligned_cols=47  Identities=32%  Similarity=0.781  Sum_probs=42.7

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT   95 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~   95 (102)
                      +.||+|...+|+|.||||++|+|||||+.|+..+    .|+..|.|.++.+
T Consensus       153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~----~~h~~H~~lR~~t  199 (278)
T KOG4582|consen  153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN----EHHAAHAMLRLHT  199 (278)
T ss_pred             ccCCCccCCccccceeeecCCCccchhHHhhcCC----CCCcccceeeccc
Confidence            7999999889999999999999999999999864    5889999999554

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=99.18  E-value=8.4e-12  Score=70.69  Aligned_cols=32  Identities=34%  Similarity=0.919  Sum_probs=28.6

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG   78 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~   78 (102)
                      +.||+|..  +.|.||+|.+|+|||||..||.++
T Consensus         1 y~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~~   32 (41)
T cd02337           1 YTCNECKH--HVETRWHCTVCEDYDLCITCYNTK   32 (41)
T ss_pred             CcCCCCCC--cCCCceECCCCcchhhHHHHhCCC
Confidence            36999985  568999999999999999999885

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>KOG0457|consensus

Probab=98.97  E-value=3.8e-10  Score=90.44  Aligned_cols=53  Identities=32%  Similarity=0.777  Sum_probs=47.5

Q ss_pred             eeCCCCCCcceee-eeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCCC
Q psy3219          45 AKCNICKECPIIG-FRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTEL   98 (102)
Q Consensus        45 ~~Cd~C~~~~i~G-~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s   98 (102)
                      ..|++|+. .|.| .|.||.+|+|||||..||+.|.+.+.|+++|+++.+.+.+.
T Consensus        15 y~C~~C~~-dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~   68 (438)
T KOG0457|consen   15 YNCDYCSL-DITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDTNSF   68 (438)
T ss_pred             CCCccHhH-HhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecCCCC
Confidence            78999996 6777 56999999999999999999999999999999988877543

>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions

Probab=98.76  E-value=4e-09  Score=68.95  Aligned_cols=31  Identities=52%  Similarity=0.926  Sum_probs=24.3

Q ss_pred             CCCCcchHHHHHHHhcCCCccchhhhhhhcc
Q psy3219           6 GPYPQQAVHFLSWLQQEPQSIVWLPVLHRLS   36 (102)
Q Consensus         6 ~~~~~~~~~f~~~~~~~p~~~~wlpll~r~~   36 (102)
                      ++..|++++|++|++++||+++|||++||++
T Consensus        60 ~~~~I~~~~Fl~wl~~ePq~lVWLP~lhRlA   90 (90)
T PF09069_consen   60 LSPKITENQFLDWLMSEPQSLVWLPTLHRLA   90 (90)
T ss_dssp             T-S-B-HHHHHHHHHT--TTTTHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHhCCCeeeHHHHHhhcC
Confidence            5778999999999999999999999999974

The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.71  E-value=6.9e-09  Score=81.32  Aligned_cols=53  Identities=23%  Similarity=0.414  Sum_probs=48.2

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCC
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE   97 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~   97 (102)
                      +.||.|..+-..-.+.+|..|++||||..||.+|.+.+.|+++|+++.|.+-+
T Consensus         6 ~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiietns   58 (432)
T COG5114           6 IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETNS   58 (432)
T ss_pred             eeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeeccC
Confidence            78999998655568999999999999999999999999999999999998754

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=98.69  E-value=2.2e-08  Score=57.76  Aligned_cols=41  Identities=27%  Similarity=0.661  Sum_probs=35.6

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCC
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKL   86 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~   86 (102)
                      +.|+.|+. ..+..||+|+...+||||..||..|+....|..
T Consensus         1 y~C~~Cg~-D~t~vryh~~~~~~~dLC~~CF~~G~f~~~~~s   41 (45)
T cd02336           1 YHCFTCGN-DCTRVRYHNLKAKKYDLCPSCYQEGRFPSNFQS   41 (45)
T ss_pred             CcccCCCC-ccCceEEEecCCCccccChHHHhCcCCCCCCcc
Confidence            36999997 667899999999999999999999987777654

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=96.38  E-value=0.0021  Score=33.46  Aligned_cols=27  Identities=44%  Similarity=1.296  Sum_probs=12.7

Q ss_pred             eCCCCCCcceee-eeEeeccCCCCccchhh
Q psy3219          46 KCNICKECPIIG-FRYRCLKCFNFDMCQTC   74 (102)
Q Consensus        46 ~Cd~C~~~~i~G-~RykC~~C~dfdLC~~C   74 (102)
                      .|+.|+. ++.| .-|.|..| ||+|-..|
T Consensus         2 ~C~~C~~-~~~~~~~Y~C~~C-df~lH~~C   29 (30)
T PF07649_consen    2 RCDACGK-PIDGGWFYRCSEC-DFDLHEEC   29 (30)
T ss_dssp             --TTTS-----S--EEE-TTT------HHH
T ss_pred             cCCcCCC-cCCCCceEECccC-CCccChhc
Confidence            6999996 6776 89999999 89988877

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=94.42  E-value=0.029  Score=29.15  Aligned_cols=28  Identities=36%  Similarity=0.994  Sum_probs=22.7

Q ss_pred             eeCCCCCCcceeee-eEeeccCCCCccchhh
Q psy3219          45 AKCNICKECPIIGF-RYRCLKCFNFDMCQTC   74 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~-RykC~~C~dfdLC~~C   74 (102)
                      ..|+.|.+ .+.|. .|+|..|. |+|-..|
T Consensus         1 ~~C~~C~~-~~~~~~~Y~C~~c~-f~lh~~C   29 (30)
T PF03107_consen    1 FWCDVCRR-KIDGFYFYHCSECC-FTLHVRC   29 (30)
T ss_pred             CCCCCCCC-CcCCCEeEEeCCCC-CeEcCcc
Confidence            36999986 78888 99999987 8776655

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.30  E-value=0.57  Score=28.70  Aligned_cols=34  Identities=32%  Similarity=0.757  Sum_probs=23.4

Q ss_pred             eeEeeccCCC---CccchhhhhCCccCCCCCCCCCeEEEecC
Q psy3219          58 FRYRCLKCFN---FDMCQTCFFQGKKAKNHKLTHPMQEYCTT   96 (102)
Q Consensus        58 ~RykC~~C~d---fdLC~~C~~~~~~~~~H~~~H~~~~i~~p   96 (102)
                      .-|+|.+|..   .-+|.+||..+    -|. .|.+..+...
T Consensus        12 ~~y~C~tC~~~~~~~iC~~CF~~~----~H~-gH~~~~~~~~   48 (71)
T PF02207_consen   12 IFYRCLTCSLDESSGICEECFANS----CHE-GHRVVYYRSS   48 (71)
T ss_dssp             EEEEETTTBSSTT-BBEHHHHCTS----GGG-GSSEEEEE--
T ss_pred             EEEECccCCCCCCEEEchhhCCCC----CcC-CCcEEEEEeC
Confidence            4688999865   78899999875    343 7777766654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
2e5r_A	63	Solution Structure Of The Zz Domain Of Dystrobrevin		8e-09
1eg3_A	261	Structure Of A Dystrophin Ww Domain Fragment In Com		2e-06

>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin Alpha (Dystrobrevin-Alpha) Length = 63

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 36 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
          S +    H  +C+ C    ++GFRYRC +C N+ +CQ CF++G    +H   H M+EY
Sbjct: 3  SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60

>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex With A Beta-Dystroglycan Peptide Length = 261

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 11  QAVHFLSWLQQEPQSIVWLPVLHRLSAAES 40
           +A  FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 232 EAALFLDWMRLEPQSMVWLPVLHRVAAAET 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	1e-24
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	4e-15
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	3e-12
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	4e-11
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	9e-09

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63

 Score = 87.2 bits (216), Expect = 1e-24
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 36 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95
          S +    H  +C+ C    ++GFRYRC +C N+ +CQ CF++G    +H   H M+EY +
Sbjct: 3  SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82

 Score = 63.5 bits (154), Expect = 4e-15
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 36 SAAESAKHQA-KCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 91
          + +   +H   KC+ C   PI G R+ C  C    + D C +C     +   HK  H ++
Sbjct: 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 71

Query: 92 EYCT 95
              
Sbjct: 72 PIYR 75

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98

 Score = 56.6 bits (136), Expect = 3e-12
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 43 HQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE 97
              CN CK+ PI G  Y+C +C  + +CQ CF          L+H         
Sbjct: 30 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF-----DSYCHLSHTFTFREKRN 79

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 11  QAVHFLSWLQQEPQSIVWLPVLHRLSAAES 40
           +A  FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 232 EAALFLDWMRLEPQSMVWLPVLHRVAAAET 261

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52

 Score = 46.6 bits (111), Expect = 9e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
          CN CK    +  R+ C  C ++D+C  C+      K+H  TH M ++
Sbjct: 9  CNECK--HHVETRWHCTVCEDYDLCINCY----NTKSH--THKMVKW 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	99.87
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	99.81
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	99.71
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	99.55
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	97.81
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	94.21
3ny3_A	75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	86.87
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	83.25
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	82.75
3nis_A	82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	81.22

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=7e-23  Score=124.97  Aligned_cols=60  Identities=37%  Similarity=0.960  Sum_probs=56.7

Q ss_pred             ccccCccCceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219          36 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT   95 (102)
Q Consensus        36 ~~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~   95 (102)
                      ++.+++.|++.||+|.+.||.|.||||++|+|||||+.||+.+.+++.|+++|+|++|.+
T Consensus         3 s~~~~v~H~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t   62 (63)
T 2e5r_A            3 SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS   62 (63)
T ss_dssp             CCSSSCCSCSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred             CCcCCceeCCCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence            567789999999999998999999999999999999999999999999999999999975

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=99.81  E-value=2.8e-20  Score=118.70  Aligned_cols=63  Identities=25%  Similarity=0.493  Sum_probs=57.1

Q ss_pred             cccCccC-ceeCCCCCCcceeeeeEeeccCCC---CccchhhhhCCccCCCCCCCCCeEEEecCCCC
Q psy3219          37 AAESAKH-QAKCNICKECPIIGFRYRCLKCFN---FDMCQTCFFQGKKAKNHKLTHPMQEYCTTELL   99 (102)
Q Consensus        37 ~~~~v~h-~~~Cd~C~~~~i~G~RykC~~C~d---fdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s~   99 (102)
                      +...++| .+.||+|.+.+|.|.||||++|+|   ||||+.||..+..+..|+++|+|++|..|++.
T Consensus        13 ~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p   79 (82)
T 2fc7_A           13 ESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP   79 (82)
T ss_dssp             STTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred             cccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence            3456777 699999998899999999999999   99999999999888999999999999998754

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=99.71  E-value=7.1e-18  Score=110.71  Aligned_cols=57  Identities=33%  Similarity=0.688  Sum_probs=50.1

Q ss_pred             cccCccCc-eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCCC
Q psy3219          37 AAESAKHQ-AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTEL   98 (102)
Q Consensus        37 ~~~~v~h~-~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s   98 (102)
                      ....+.|. +.||+|.+.+|.|.||||++|+|||||+.||..+    .| +.|+|+.+.++..
T Consensus        23 ~~~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~----~H-~~H~f~~i~~~~~   80 (98)
T 2dip_A           23 KERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY----CH-LSHTFTFREKRNQ   80 (98)
T ss_dssp             SSCCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT----SG-GGSCEEECCSSSC
T ss_pred             cccccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC----CC-CCCCeeEecCCCC
Confidence            33467886 9999999989999999999999999999999987    47 8999999887754

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=99.55  E-value=1.5e-15  Score=89.25  Aligned_cols=46  Identities=30%  Similarity=0.735  Sum_probs=40.5

Q ss_pred             ceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCC
Q psy3219          44 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE   97 (102)
Q Consensus        44 ~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~   97 (102)
                      .+.||+|++. | |.||+|++|+|||||+.||..+    .|  .|+|.+|..+.
T Consensus         6 ~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~----~H--~H~m~~~~~~l   51 (52)
T 1tot_A            6 VYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTK----SH--THKMVKWGLGL   51 (52)
T ss_dssp             CEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHH----CC--CSSEEEECSSC
T ss_pred             EEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCC----CC--CCceEEecCCC
Confidence            4899999974 5 9999999999999999999986    45  69999998763

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=97.81  E-value=8.7e-06  Score=60.95  Aligned_cols=34  Identities=56%  Similarity=1.001  Sum_probs=31.6

Q ss_pred             CCCCcchHHHHHHHhcCCCccchhhhhhhccccc
Q psy3219           6 GPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAE   39 (102)
Q Consensus         6 ~~~~~~~~~f~~~~~~~p~~~~wlpll~r~~~~~   39 (102)
                      +.+.|++++|++|++++|+.++|||++||+++.+
T Consensus       227 ~dg~It~~EFl~~~~~dp~il~wL~~lhR~~~~E  260 (261)
T 1eg3_A          227 NKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAE  260 (261)
T ss_dssp             TCSCBCHHHHHHHHHTCCTTTTHHHHHHHHHHHC
T ss_pred             CCCcCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence            5679999999999999999999999999998876

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=94.21  E-value=0.029  Score=35.23  Aligned_cols=33  Identities=27%  Similarity=0.733  Sum_probs=28.1

Q ss_pred             ceeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219          44 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG   78 (102)
Q Consensus        44 ~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~   78 (102)
                      .+.|+.|.. .+.|.+|+|..| ||+|=..|....
T Consensus        47 ~~~C~~C~~-~~~~~~Y~C~~C-~f~lH~~Ca~~p   79 (89)
T 1v5n_A           47 VYTCDKCEE-EGTIWSYHCDEC-DFDLHAKCALNE   79 (89)
T ss_dssp             SCCCTTTSC-CCCSCEEECTTT-CCCCCHHHHHCS
T ss_pred             CeEeCCCCC-cCCCcEEEcCCC-CCeEcHHhcCCC
Confidence            478999997 578999999998 799999997653

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A

Probab=86.87  E-value=0.65  Score=28.30  Aligned_cols=33  Identities=24%  Similarity=0.576  Sum_probs=24.0

Q ss_pred             eeEeeccCC---CCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219          58 FRYRCLKCF---NFDMCQTCFFQGKKAKNHKLTHPMQEYCT   95 (102)
Q Consensus        58 ~RykC~~C~---dfdLC~~C~~~~~~~~~H~~~H~~~~i~~   95 (102)
                      .-|+|..|.   ..-||..||..+    .| ..|.+..+..
T Consensus        16 ~~Y~C~~C~~d~tc~lC~~CF~~~----~H-~gH~~~~~~s   51 (75)
T 3ny3_A           16 PTYSCRDCAVDPTCVLCMECFLGS----IH-RDHRYRMTTS   51 (75)
T ss_dssp             EEEEETTTBSSTTCCBCHHHHHTS----GG-GGSCEEEEEC
T ss_pred             EEEECccCCCCCCeeEChHHCCCC----Cc-CCceEEEEEc
Confidence            458899994   367999999986    34 4577776654

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=83.25  E-value=1  Score=27.03  Aligned_cols=53  Identities=26%  Similarity=0.488  Sum_probs=38.5

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCCCCCCC
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPNH  102 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s~~~~  102 (102)
                      .-|-.|..+    .-++|.-|.+-=+|..||..... ..=...|..+.|..|-...+|
T Consensus         9 pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~k~~~~   61 (67)
T 2d8v_A            9 PWCCICNED----ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRRPCQEH   61 (67)
T ss_dssp             SSCTTTCSC----CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSSSSCCC
T ss_pred             CeeEEeCCC----CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCCCCccc
Confidence            347778863    24899999775569999987542 334568999999888877766

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=82.75  E-value=0.85  Score=25.51  Aligned_cols=30  Identities=33%  Similarity=0.787  Sum_probs=20.1

Q ss_pred             hhcccccCccCceeCCCCCCcceeeeeEeeccCC
Q psy3219          33 HRLSAAESAKHQAKCNICKECPIIGFRYRCLKCF   66 (102)
Q Consensus        33 ~r~~~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~   66 (102)
                      ||+......  ...||.|++.-..|  ++|..|.
T Consensus         5 HrF~~~t~~--~t~C~~C~k~i~~G--~kC~~Ck   34 (49)
T 1kbe_A            5 HRFSTKSWL--SQVCNVCQKSMIFG--VKCKHCR   34 (49)
T ss_dssp             CCEEEECCS--SCCCSSSCCSSCCE--EEETTTT
T ss_pred             cccCccCCC--CcCccccCceeECc--CCCCCCC
Confidence            566665544  38999999754444  7887763

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A

Probab=81.22  E-value=1.1  Score=27.81  Aligned_cols=33  Identities=27%  Similarity=0.573  Sum_probs=24.3

Q ss_pred             eeEeeccCC---CCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219          58 FRYRCLKCF---NFDMCQTCFFQGKKAKNHKLTHPMQEYCT   95 (102)
Q Consensus        58 ~RykC~~C~---dfdLC~~C~~~~~~~~~H~~~H~~~~i~~   95 (102)
                      .-|+|..|.   ..-||..||..+    .| ..|.+..+..
T Consensus        20 ~~Y~C~~C~~d~tcvlC~~CF~~s----~H-~gH~~~~~~s   55 (82)
T 3nis_A           20 PLYRCHECGCDDTCVLCIHCFNPK----DH-VNHHVCTDIC   55 (82)
T ss_dssp             EEEEETTTBSSTTCCBCTTTCCGG----GG-TTSCEEEEEC
T ss_pred             EEEEeeccCCCCCceEchhhCCCC----Cc-CCceEEEEEe
Confidence            469999994   477899999875    45 4777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1eg3a2	97	a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapie	2e-13
d2dipa1	85	g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p	4e-12
d2fc7a1	69	g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p	5e-12
d1tota1	52	g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse	1e-08

>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 2e-13
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAES 40
          +A  FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 68 EAALFLDWMRLEPQSMVWLPVLHRVAAAET 97

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 4e-12
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95
           KH    CN CK+ PI G  Y+C +C  + +CQ C F      +H  T   +    
Sbjct: 20 DKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQEC-FDSYCHLSHTFTFREKRNQK 74

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 5e-12
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 43 HQAKCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 91
             KC+ C   PI G R+ C  C    + D C +C     +   HK  H ++
Sbjct: 13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 64

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (107), Expect = 1e-08
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYC 94
          CN CK    +  R+ C  C ++D+C  C+           TH M ++ 
Sbjct: 9  CNECKH--HVETRWHCTVCEDYDLCINCY------NTKSHTHKMVKWG 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	99.76
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	99.6
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	99.47
d1eg3a2	97	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	97.12
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	91.01
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	89.26

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-19  Score=109.06  Aligned_cols=58  Identities=28%  Similarity=0.573  Sum_probs=52.9

Q ss_pred             cccCccCc-eeCCCCCCcceeeeeEeeccCC---CCccchhhhhCCccCCCCCCCCCeEEEe
Q psy3219          37 AAESAKHQ-AKCNICKECPIIGFRYRCLKCF---NFDMCQTCFFQGKKAKNHKLTHPMQEYC   94 (102)
Q Consensus        37 ~~~~v~h~-~~Cd~C~~~~i~G~RykC~~C~---dfdLC~~C~~~~~~~~~H~~~H~~~~i~   94 (102)
                      ....|.|. +.||+|...+|.|.||+|++|+   |||||+.||..+..+..|+.+|+|+.|.
T Consensus         6 ~~~~v~H~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1           6 ESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY   67 (69)
T ss_dssp             STTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred             cCCCceECCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEee
Confidence            45578885 9999999999999999999995   9999999999998889999999999885

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-16  Score=99.26  Aligned_cols=55  Identities=33%  Similarity=0.688  Sum_probs=44.8

Q ss_pred             cccCccCc-eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecC
Q psy3219          37 AAESAKHQ-AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTT   96 (102)
Q Consensus        37 ~~~~v~h~-~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p   96 (102)
                      .....+|. +.||+|.+.+|.|.||+|.+|+|||||+.||..+     +++.|+|.....+
T Consensus        16 ~~~~~~H~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~~-----~h~~H~f~~~~~~   71 (85)
T d2dipa1          16 KERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY-----CHLSHTFTFREKR   71 (85)
T ss_dssp             SSCCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT-----SGGGSCEEECCSS
T ss_pred             ccccCccCCeECCCCCCCCcCcceEEcCCCCCccchHHHHCcC-----CCCCCCcceecCC
Confidence            34455775 9999999999999999999999999999999864     3367888655444

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=7.3e-15  Score=84.95  Aligned_cols=45  Identities=31%  Similarity=0.764  Sum_probs=38.5

Q ss_pred             eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCC
Q psy3219          45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE   97 (102)
Q Consensus        45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~   97 (102)
                      +.||+|++ .| |.||+|.+|+|||||+.||.++    .|  .|+|.+|..+.
T Consensus         7 ~tCd~C~~-~i-~~Ry~C~~C~DfDLC~~C~~~~----~H--~H~m~k~~~~~   51 (52)
T d1tota1           7 YTCNECKH-HV-ETRWHCTVCEDYDLCINCYNTK----SH--THKMVKWGLGL   51 (52)
T ss_dssp             EEETTTTE-EE-SSEEEESSSSSCEECHHHHHHH----CC--CSSEEEECSSC
T ss_pred             EECcCCCC-cC-CCceECCCCCCcccHHHHhcCC----Cc--CCCeEEecCCC
Confidence            68999996 44 8999999999999999999875    45  59999998753

>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.1e-10  Score=71.97  Aligned_cols=36  Identities=53%  Similarity=0.923  Sum_probs=32.5

Q ss_pred             CCCCCCcchHHHHHHHhcCCCccchhhhhhhccccc
Q psy3219           4 TLGPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAE   39 (102)
Q Consensus         4 ~~~~~~~~~~~f~~~~~~~p~~~~wlpll~r~~~~~   39 (102)
                      ..+...|++|+|++|++++||+++|||++||+++.+
T Consensus        61 ~~~~~~i~~~~FL~wl~~ePq~LvWLp~lHRla~aE   96 (97)
T d1eg3a2          61 ANNKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAE   96 (97)
T ss_dssp             TTTCSCBCHHHHHHHHHTCCTTTTHHHHHHHHHHHC
T ss_pred             cCCCCcccHHHHHHHHHhCCCceehHHHHHHHHHhc
Confidence            346678999999999999999999999999998865

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.12  E-value=0.00022  Score=43.90  Aligned_cols=39  Identities=23%  Similarity=0.629  Sum_probs=31.7

Q ss_pred             ceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCC
Q psy3219          44 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH   84 (102)
Q Consensus        44 ~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H   84 (102)
                      ...|+.|.. .+.|.+|+|..| ||+|...|.........|
T Consensus        47 ~~~C~~C~~-~~~g~~Y~C~~C-~f~LH~~CA~~P~~~~~~   85 (89)
T d1v5na_          47 VYTCDKCEE-EGTIWSYHCDEC-DFDLHAKCALNEDTKESG   85 (89)
T ss_dssp             SCCCTTTSC-CCCSCEEECTTT-CCCCCHHHHHCSSCSSCC
T ss_pred             CCEeCCCCC-CcCCcEeEeccC-CCEecHHHcCCCcccCCC
Confidence            478999996 789999999999 799999998775433333

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.057  Score=26.72  Aligned_cols=29  Identities=24%  Similarity=0.669  Sum_probs=23.8

Q ss_pred             eCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219          46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ   77 (102)
Q Consensus        46 ~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~   77 (102)
                      .|.+|+. ++.|.||+-..  |.-.|.+||..
T Consensus         1 vCt~Ck~-~LaGqrFTSrd--e~pYC~~Cfg~   29 (32)
T d2cuqa1           1 VCTGCQT-PLAGQQFTSRD--EDPYCVACFGE   29 (32)
T ss_dssp             BCSSSCC-BCTTCCEEECS--SSEEEHHHHHH
T ss_pred             CccccCc-cccCCccccCC--CCccHHHHhHh
Confidence            4889996 89999999775  56679999964

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.085  Score=25.82  Aligned_cols=29  Identities=21%  Similarity=0.677  Sum_probs=23.3

Q ss_pred             eCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219          46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ   77 (102)
Q Consensus        46 ~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~   77 (102)
                      .|..|++ .+.|.||+-..  |-.+|.+||.+
T Consensus         1 vC~~C~K-~Lag~rFTa~e--Dq~yCVdCYK~   29 (31)
T d2cura1           1 VCVTCSK-KLAGQRFTAVE--DQYYCVDCYKN   29 (31)
T ss_dssp             BCTTTCC-BCTTSCEEECS--SCEEEHHHHHH
T ss_pred             Ccccccc-hhcCceeEEec--ceEEEeeeecc
Confidence            4889996 89999999765  66679999853