Psyllid ID: psy3270
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 655 | 2.2.26 [Sep-21-2011] | |||||||
| P11146 | 633 | Heat shock 70 kDa protein | yes | N/A | 0.758 | 0.785 | 0.798 | 0.0 | |
| O97125 | 635 | Heat shock protein 68 OS= | no | N/A | 0.758 | 0.782 | 0.75 | 0.0 | |
| P41827 | 640 | Heat shock protein 70 B2 | N/A | N/A | 0.789 | 0.807 | 0.718 | 0.0 | |
| P41826 | 640 | Heat shock protein 70 A2 | N/A | N/A | 0.789 | 0.807 | 0.714 | 0.0 | |
| P41825 | 640 | Heat shock protein 70 A1 | N/A | N/A | 0.789 | 0.807 | 0.712 | 0.0 | |
| P02825 | 642 | Major heat shock 70 kDa p | no | N/A | 0.758 | 0.774 | 0.737 | 0.0 | |
| P82910 | 642 | Major heat shock 70 kDa p | no | N/A | 0.758 | 0.774 | 0.737 | 0.0 | |
| Q9BIR7 | 641 | Major heat shock 70 kDa p | no | N/A | 0.758 | 0.775 | 0.733 | 0.0 | |
| Q9BIS2 | 641 | Major heat shock 70 kDa p | no | N/A | 0.758 | 0.775 | 0.733 | 0.0 | |
| Q8INI8 | 641 | Major heat shock 70 kDa p | no | N/A | 0.758 | 0.775 | 0.733 | 0.0 |
| >sp|P11146|HSP7B_DROME Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/506 (79%), Positives = 450/506 (88%), Gaps = 9/506 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
MREIAEVYLGGKV +AV+TVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD
Sbjct: 127 MREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVSVL+IDEGSLF+VK+TAGDTHLGGEDFDNRLV FA+EF
Sbjct: 187 KNLKGERNVLIFDLGGGTFDVSVLSIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFAEEF 246
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHK DI N RA+RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKI+RARFEEL
Sbjct: 247 KRKHKSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKISRARFEEL 306
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MDLFR T+ PVERAL+DAK+DK +IHDVVLVGGS RIPKIQK+LQD F GK LNLSINP
Sbjct: 307 NMDLFRSTMQPVERALSDAKMDKKAIHDVVLVGGSTRIPKIQKLLQDLFGGKQLNLSINP 366
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAIL+G SS IQD+LLVDVAPLSLGIETAGGVMT +VERN+RIPCKQQ
Sbjct: 367 DEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPLSLGIETAGGVMTNLVERNARIPCKQQ 426
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
Q FTTYSDNQNAVTIQV+EGERAMTKDNNLLGTFNLTGIPPAPRGVP+IEV FDL+A+GI
Sbjct: 427 QIFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNLTGIPPAPRGVPQIEVAFDLNADGI 486
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV+AKD+STGK+E+ITI NDKGRLSK +IDRML+EAEKYK EDD+QRERV +KN LE+Y
Sbjct: 487 LNVNAKDNSTGKSEKITISNDKGRLSKAEIDRMLSEAEKYKVEDDRQRERVQSKNNLEAY 546
Query: 579 AFAVKQAAEDSGSK-LSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
+A +QA +D+ S LS+ +++ V CS+ +WL+ NSLAEKEEFE LK Q+ CTPI
Sbjct: 547 IYACRQAVDDAPSGVLSETERSKVRDKCSSEASWLDKNSLAEKEEFESHLKECQRICTPI 606
Query: 638 MTKLH------QAGGKG--PDVEEVD 655
M+K+H + GKG P VEEVD
Sbjct: 607 MSKIHGGKKGKSSMGKGSHPTVEEVD 632
|
Drosophila melanogaster (taxid: 7227) |
| >sp|O97125|HSP68_DROME Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/512 (75%), Positives = 447/512 (87%), Gaps = 15/512 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG V +AVITVPAYFNDSQRQATKDAG+IAG+NVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAGINVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLV FA+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVNHFAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEASLEIDAL+EG DFYSK++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEASLEIDALYEGHDFYSKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+AL DAK+DK IHD+VLVGGS RIPK+Q +LQ+FF GK+LNLSINP
Sbjct: 304 CGDLFRNTLEPVEKALKDAKMDKSQIHDIVLVGGSTRIPKVQNLLQNFFGGKTLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAA+QAAILSGD SS I+DVLLVDVAPLSLGIETAGGVMTK++ERNSRIPCKQ
Sbjct: 364 DEAVAYGAAIQAAILSGDKSSEIKDVLLVDVAPLSLGIETAGGVMTKLIERNSRIPCKQS 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TFTTY+DNQ AVTIQVFEGERA+TKDNN+LGTF+LTG+PPAPRGVPKI+VTFDLDANGI
Sbjct: 424 KTFTTYADNQPAVTIQVFEGERALTKDNNVLGTFDLTGVPPAPRGVPKIDVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV+AK+ TG A+ ITI+NDKGRLS+ DIDRML+EAEKY ED++ R+R+AA+N+LE+Y
Sbjct: 484 LNVTAKEQGTGNAKNITIKNDKGRLSQADIDRMLSEAEKYAEEDERHRQRIAARNQLETY 543
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
F VK+AAE+ G ++S ADK+S+ + CS + WL+ N+ AEKEE+E +LK L+Q C+PIM
Sbjct: 544 LFGVKEAAENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCSPIM 603
Query: 639 TKLHQAGG---------------KGPDVEEVD 655
TK+H+ GG KGP VEEVD
Sbjct: 604 TKMHKGGGDGQQAPNFGQQAGGYKGPTVEEVD 635
|
Drosophila melanogaster (taxid: 7227) |
| >sp|P41827|HSP74_ANOAL Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/536 (71%), Positives = 449/536 (83%), Gaps = 19/536 (3%)
Query: 139 LKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAG 198
KGE+ + M+E AE YLG V AVITVPAYFNDSQRQATKDAG+IAG
Sbjct: 105 FKGERKTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAG 164
Query: 199 LNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGD 258
LNV+RIINEPTAAALAYGLDKNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGD
Sbjct: 165 LNVMRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGD 224
Query: 259 THLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318
THLGGEDFDNR+V F +EFKRKHKKD+ N RA+RRLRTACERAKRTLSSSTEA++EID
Sbjct: 225 THLGGEDFDNRMVGHFVEEFKRKHKKDLSKNARALRRLRTACERAKRTLSSSTEATIEID 284
Query: 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 378
AL +GID+Y+KI+RARFEELC DLFR TL PVE+AL+DAK+DK SIHD+VLVGGS RIPK
Sbjct: 285 ALMDGIDYYTKISRARFEELCSDLFRSTLQPVEKALSDAKMDKSSIHDIVLVGGSTRIPK 344
Query: 379 IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIET 438
+Q +LQ+FF GKSLNLSINPDEAVAYGAAVQAAILSGD IQDVLLVDVAPLSLGIET
Sbjct: 345 VQSLLQNFFAGKSLNLSINPDEAVAYGAAVQAAILSGDKDDKIQDVLLVDVAPLSLGIET 404
Query: 439 AGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 498
AGGVMTK++ERNSRIPCKQ Q F+TY+DNQ V+IQVFEGERAMTKDNNLLG F+L+GIP
Sbjct: 405 AGGVMTKLIERNSRIPCKQTQIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIP 464
Query: 499 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558
PAPRGVP+IEVTFDLDANGILNV+AK+ STGK + ITI+NDKGRLS+ DIDRM++EAEK+
Sbjct: 465 PAPRGVPQIEVTFDLDANGILNVAAKEKSTGKEKNITIKNDKGRLSQADIDRMVSEAEKF 524
Query: 559 KAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADKTSVSQACSATLTWLEGNSL 617
+ ED+KQRER++A+N+LE+Y F +KQ+ + G SKLSDAD+ +V C TL W++GN++
Sbjct: 525 REEDEKQRERISARNQLEAYCFNLKQSLDGEGASKLSDADRKTVQDRCEETLRWIDGNTM 584
Query: 618 AEKEEFEDRLKTLQQTCTPIMTKLHQ--AGGK----------------GPDVEEVD 655
A+KEEFE +++ L + C+PIMTKLHQ AGG GP VEEVD
Sbjct: 585 ADKEEFEHKMQELTKACSPIMTKLHQQAAGGPSPSSCAQQAGGFGGRTGPTVEEVD 640
|
Anopheles albimanus (taxid: 7167) |
| >sp|P41826|HSP72_ANOAL Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/536 (71%), Positives = 447/536 (83%), Gaps = 19/536 (3%)
Query: 139 LKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAG 198
KGE+ + M+E AE YLG V AVITVPAYFNDSQRQATKDAG+IAG
Sbjct: 105 FKGERKTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAG 164
Query: 199 LNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGD 258
LNV+RIINEPTAAALAYGLDKNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V++TAGD
Sbjct: 165 LNVMRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGD 224
Query: 259 THLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318
THLGGEDFDNR+V F +EFKRK KKD+ N RA+RRLRTACERAKRTLSSSTEA++EID
Sbjct: 225 THLGGEDFDNRMVAHFVEEFKRKFKKDLSKNARALRRLRTACERAKRTLSSSTEATIEID 284
Query: 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 378
AL +GID+Y+KI+RARFEELC DLFR TL PVE+AL+DAK+DK SIHD+VLVGGS RIPK
Sbjct: 285 ALMDGIDYYTKISRARFEELCSDLFRSTLQPVEKALSDAKMDKSSIHDIVLVGGSTRIPK 344
Query: 379 IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIET 438
+Q +LQ+FF GKSLNLSINPDEAVAYGAAVQAAILSGD IQDVLLVDVAPLSLGIET
Sbjct: 345 VQSLLQNFFAGKSLNLSINPDEAVAYGAAVQAAILSGDKDDKIQDVLLVDVAPLSLGIET 404
Query: 439 AGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 498
AGGVMTK++ERNSRIPCKQ + F+TY+DNQ V+IQVFEGERAMTKDNNLLG F+L+GIP
Sbjct: 405 AGGVMTKLIERNSRIPCKQTKIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIP 464
Query: 499 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558
PAPRGVP+IEVTFDLDANGILNV+AKD S+GK + ITI+NDKGRLS+ DIDRM++EAEKY
Sbjct: 465 PAPRGVPQIEVTFDLDANGILNVAAKDKSSGKEKNITIKNDKGRLSQADIDRMVSEAEKY 524
Query: 559 KAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADKTSVSQACSATLTWLEGNSL 617
+ ED+KQRE +AA+N+LE+Y F +KQ+ + G SKLSDAD+ +V C TL W++GN++
Sbjct: 525 REEDEKQREAIAARNQLEAYCFNLKQSLDGEGSSKLSDADRRTVQDRCDETLRWIDGNTM 584
Query: 618 AEKEEFEDRLKTLQQTCTPIMTKLHQ--AGGK----------------GPDVEEVD 655
AEKEE+E +++ L + C+PIMTKLHQ AGG GP VEEVD
Sbjct: 585 AEKEEYEHQMQELSRVCSPIMTKLHQQAAGGPQPTSCGQQAGGFGGRTGPTVEEVD 640
|
Anopheles albimanus (taxid: 7167) |
| >sp|P41825|HSP71_ANOAL Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/536 (71%), Positives = 447/536 (83%), Gaps = 19/536 (3%)
Query: 139 LKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAG 198
KGE+ + M+E AE YLG V AVITVPAYFNDSQRQATKDAG+IAG
Sbjct: 105 FKGERKTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAG 164
Query: 199 LNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGD 258
LNV+RIINEPTAAALAYGLDKNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V++TAGD
Sbjct: 165 LNVMRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGD 224
Query: 259 THLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318
THLGGEDFDNR+V F +EFKRK KKD+ N RA+RRLRTACERAKRTLSSSTEA++EID
Sbjct: 225 THLGGEDFDNRMVAHFVEEFKRKFKKDLSKNARALRRLRTACERAKRTLSSSTEATIEID 284
Query: 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 378
AL +GID+Y+KI+RARFEELC DLFR TL PVE+AL+DAK+DK SIHD+VLVGGS RIPK
Sbjct: 285 ALMDGIDYYTKISRARFEELCSDLFRSTLQPVEKALSDAKMDKSSIHDIVLVGGSTRIPK 344
Query: 379 IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIET 438
+Q +LQ+FF GKSLNLSINPDEAVAYGAAVQAAILSGD IQDVLLVDVAPLSLGIET
Sbjct: 345 VQSLLQNFFAGKSLNLSINPDEAVAYGAAVQAAILSGDKDDKIQDVLLVDVAPLSLGIET 404
Query: 439 AGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 498
AGGVMTK++ERNSRIPCKQ + F+TY+DNQ V+IQVFEGERAMTKDNNLLG F+L+GIP
Sbjct: 405 AGGVMTKLIERNSRIPCKQTKIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIP 464
Query: 499 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558
PAPRGVP+IEVTFDLDANGILNV+AKD S+GK + ITI+NDKGRLS+ DIDRM++EAEKY
Sbjct: 465 PAPRGVPQIEVTFDLDANGILNVAAKDKSSGKEKNITIKNDKGRLSQADIDRMVSEAEKY 524
Query: 559 KAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADKTSVSQACSATLTWLEGNSL 617
+ ED+KQRE +AA+N+LE+Y F +KQ+ + G SKLS+AD+ +V C TL W++GN++
Sbjct: 525 REEDEKQREAIAARNQLEAYCFNLKQSLDGEGSSKLSEADRRTVQDRCDETLRWIDGNTM 584
Query: 618 AEKEEFEDRLKTLQQTCTPIMTKLHQ--AGGK----------------GPDVEEVD 655
AEKEE+E +++ L + C+PIMTKLHQ AGG GP VEEVD
Sbjct: 585 AEKEEYEHQMQELSRVCSPIMTKLHQQAAGGPQPTSCGQQAGGFGGRTGPTVEEVD 640
|
Anopheles albimanus (taxid: 7167) |
| >sp|P02825|HSP71_DROME Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=2 SV=3 | Back alignment and function description |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/519 (73%), Positives = 440/519 (84%), Gaps = 22/519 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT ADEF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLADEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQDFF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQDFFHGKNLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TY+DNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQA E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +L+ L + C+PI
Sbjct: 544 VFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPI 603
Query: 638 MTKLH-----------------QAGG----KGPDVEEVD 655
MTK+H QAGG GP VEEVD
Sbjct: 604 MTKMHQQGAGAGAGGPGANCGQQAGGFGGYSGPTVEEVD 642
|
Drosophila melanogaster (taxid: 7227) |
| >sp|P82910|HSP70_DROME Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2 | Back alignment and function description |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/519 (73%), Positives = 440/519 (84%), Gaps = 22/519 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT ADEF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLADEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQDFF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQDFFHGKNLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TY+DNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQA E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +L+ L + C+PI
Sbjct: 544 VFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPI 603
Query: 638 MTKLH-----------------QAGG----KGPDVEEVD 655
MTK+H QAGG GP VEEVD
Sbjct: 604 MTKMHQQGAGAGAGGPGANCGQQAGGFGGYSGPTVEEVD 642
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9BIR7|HSP75_DROME Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2 | Back alignment and function description |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/518 (73%), Positives = 440/518 (84%), Gaps = 21/518 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLH----------------QAGG----KGPDVEEVD 655
MTK+H QAGG GP VEEVD
Sbjct: 604 MTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9BIS2|HSP73_DROME Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2 | Back alignment and function description |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/518 (73%), Positives = 440/518 (84%), Gaps = 21/518 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLH----------------QAGG----KGPDVEEVD 655
MTK+H QAGG GP VEEVD
Sbjct: 604 MTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q8INI8|HSP72_DROME Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2 | Back alignment and function description |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/518 (73%), Positives = 440/518 (84%), Gaps = 21/518 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLH----------------QAGG----KGPDVEEVD 655
MTK+H QAGG GP VEEVD
Sbjct: 604 MTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 655 | ||||||
| 193587299 | 623 | PREDICTED: heat shock protein 70 B2-like | 0.766 | 0.805 | 0.829 | 0.0 | |
| 386686301 | 631 | heat shock protein 70 [Nilaparvata lugen | 0.758 | 0.787 | 0.857 | 0.0 | |
| 91078136 | 631 | PREDICTED: similar to heat shock protein | 0.738 | 0.767 | 0.853 | 0.0 | |
| 170057986 | 640 | heat shock protein 70 B2 [Culex quinquef | 0.740 | 0.757 | 0.843 | 0.0 | |
| 241853747 | 613 | heat shock protein, putative [Ixodes sca | 0.758 | 0.810 | 0.787 | 0.0 | |
| 195395136 | 635 | GJ10355 [Drosophila virilis] gi|19414290 | 0.758 | 0.782 | 0.797 | 0.0 | |
| 51849654 | 645 | heat shock protein 70 [Chironomus yoshim | 0.789 | 0.801 | 0.762 | 0.0 | |
| 17737941 | 633 | heat shock protein cognate 2 [Drosophila | 0.758 | 0.785 | 0.798 | 0.0 | |
| 195037467 | 633 | GH18372 [Drosophila grimshawi] gi|193894 | 0.758 | 0.785 | 0.798 | 0.0 | |
| 323361567 | 638 | heat shock protein 70-S2 [Stratiomys sin | 0.758 | 0.778 | 0.765 | 0.0 |
| >gi|193587299|ref|XP_001949837.1| PREDICTED: heat shock protein 70 B2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/516 (82%), Positives = 474/516 (91%)
Query: 140 KGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGL 199
KGE+ + + M+EIAEVYLGGKV++AV+TVPAYFNDSQRQATKDAG+IAGL
Sbjct: 108 KGERKIFAPEEVSSMVLTKMKEIAEVYLGGKVTDAVVTVPAYFNDSQRQATKDAGAIAGL 167
Query: 200 NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDT 259
NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS+LAIDEGSLF+VKSTAGDT
Sbjct: 168 NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSILAIDEGSLFEVKSTAGDT 227
Query: 260 HLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319
HLGGEDFDNRLVT F +EFKRK KKDI NTRA+RRLRTACERAKRTLSSSTEASLEIDA
Sbjct: 228 HLGGEDFDNRLVTHFVEEFKRKCKKDISGNTRALRRLRTACERAKRTLSSSTEASLEIDA 287
Query: 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKI 379
LH+G+DFYSKITRARFEE+CMDLFR TL+PVE+AL DAK+DK SIHDVVLVGGS RIPKI
Sbjct: 288 LHDGVDFYSKITRARFEEMCMDLFRSTLSPVEKALADAKMDKSSIHDVVLVGGSTRIPKI 347
Query: 380 QKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETA 439
QKMLQDFF GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDV PLSLGIETA
Sbjct: 348 QKMLQDFFCGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVTPLSLGIETA 407
Query: 440 GGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPP 499
GGVMTK+VERNSRIPCKQQQTFTTYSDNQ AVTI V+EGERAMTKDNNLLGTFNLTGIPP
Sbjct: 408 GGVMTKLVERNSRIPCKQQQTFTTYSDNQAAVTITVYEGERAMTKDNNLLGTFNLTGIPP 467
Query: 500 APRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559
APRGVPKIEVTFDLDANGILNVSAK+ STGK+ERITI+NDKGRLSK+DID+ML EAE Y+
Sbjct: 468 APRGVPKIEVTFDLDANGILNVSAKEISTGKSERITIKNDKGRLSKEDIDKMLKEAEMYR 527
Query: 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAE 619
ED+KQ+ERV A+N+LESYAF+VKQA E++GSKL + DK ++ ++C A +TWLE N+LA+
Sbjct: 528 QEDEKQKERVTARNQLESYAFSVKQAIEEAGSKLPETDKKTILESCKAVITWLETNTLAD 587
Query: 620 KEEFEDRLKTLQQTCTPIMTKLHQAGGKGPDVEEVD 655
K+EFED+LK LQ+ C+PIMTKLHQAG KGP+VEEVD
Sbjct: 588 KDEFEDKLKDLQKECSPIMTKLHQAGAKGPNVEEVD 623
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|386686301|gb|AFJ20626.1| heat shock protein 70 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/504 (85%), Positives = 469/504 (93%), Gaps = 7/504 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EI+E YLG KV +AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAALAYGLD
Sbjct: 128 MKEISETYLGTKVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 187
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGEKNVLIFDLGGGTFDVS+LAIDEGSLFQVKSTAGDTHLGGEDFDNRLV FADEF
Sbjct: 188 KNLKGEKNVLIFDLGGGTFDVSILAIDEGSLFQVKSTAGDTHLGGEDFDNRLVKHFADEF 247
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
+RK+KKD+ +N RA+RRLRTACERAKRTLSSSTEASLEIDALH+GIDFY+KITRARFEE+
Sbjct: 248 QRKNKKDLTSNVRALRRLRTACERAKRTLSSSTEASLEIDALHDGIDFYAKITRARFEEM 307
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
CMD+FR TLAPVERAL DAKLDKG+IHDVVLVGGS RIPKIQKMLQDFF GK+LNLSINP
Sbjct: 308 CMDMFRSTLAPVERALTDAKLDKGAIHDVVLVGGSTRIPKIQKMLQDFFCGKALNLSINP 367
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTK+VERNSRIPCKQQ
Sbjct: 368 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKLVERNSRIPCKQQ 427
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQ+AVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRG+PKIEVTFDLDANGI
Sbjct: 428 QTFTTYSDNQSAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGIPKIEVTFDLDANGI 487
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAKDSSTGK+E+ITIQNDKGRLSK++IDRML EA+KYKAEDDK RERVAA+N+LE Y
Sbjct: 488 LNVSAKDSSTGKSEKITIQNDKGRLSKEEIDRMLKEADKYKAEDDKLRERVAARNQLEGY 547
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
AF+VKQAAED+G+KLS+A+K V C+A L WLE N+ AEK+EFED+LK LQ+ CTPIM
Sbjct: 548 AFSVKQAAEDAGAKLSEAEKKQVQDKCAAVLAWLETNTQAEKDEFEDKLKELQKECTPIM 607
Query: 639 TKLHQ-------AGGKGPDVEEVD 655
TK+HQ A KGP VEEVD
Sbjct: 608 TKIHQGAGGGAGANAKGPTVEEVD 631
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91078136|ref|XP_973521.1| PREDICTED: similar to heat shock protein 70 B2 [Tribolium castaneum] gi|270001374|gb|EEZ97821.1| hypothetical protein TcasGA2_TC000188 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/485 (85%), Positives = 449/485 (92%), Gaps = 1/485 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIA+ YLG KV++AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAALAYGLD
Sbjct: 127 MKEIADTYLGAKVNDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGEKNVLIFDLGGGTFDVS+L+IDEGSLF+VKSTAGDTHLGGEDFDNRLV F EF
Sbjct: 187 KNLKGEKNVLIFDLGGGTFDVSILSIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHFIQEF 246
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKH KD+ +NTRAVRRLRTACERAKRTLSSS EAS+EIDALHEGIDFYSK++RARFEE+
Sbjct: 247 KRKHHKDLSSNTRAVRRLRTACERAKRTLSSSAEASIEIDALHEGIDFYSKVSRARFEEM 306
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
CMD FR TL PVERAL DAKLDKG+IHD+VLVGGS RIPKIQKMLQDFF GK LNLSINP
Sbjct: 307 CMDYFRSTLQPVERALADAKLDKGAIHDIVLVGGSTRIPKIQKMLQDFFCGKPLNLSINP 366
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAIL+GDTSS IQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ
Sbjct: 367 DEAVAYGAAVQAAILTGDTSSQIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 426
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI
Sbjct: 427 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 486
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAKD+STGK+ERITI NDKGRLSK DID+MLAEAEKYKAEDDKQ+ER+AA+N+LE Y
Sbjct: 487 LNVSAKDTSTGKSERITITNDKGRLSKADIDKMLAEAEKYKAEDDKQKERIAARNQLEGY 546
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F+VKQA ED+ KL++ DK + + CSA L+WL+ N LAEKEEFED+LK LQ+ C+PI
Sbjct: 547 IFSVKQAGEDAPADKLTEDDKKIIREKCSAALSWLDSNQLAEKEEFEDKLKELQKDCSPI 606
Query: 638 MTKLH 642
M KLH
Sbjct: 607 MMKLH 611
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170057986|ref|XP_001864723.1| heat shock protein 70 B2 [Culex quinquefasciatus] gi|167877233|gb|EDS40616.1| heat shock protein 70 B2 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/486 (84%), Positives = 447/486 (91%), Gaps = 1/486 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
MRE+AEVYLGGKV++ VITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAALAYGLD
Sbjct: 127 MREVAEVYLGGKVTDGVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGEKNVLIFDLGGGTFDVS+L IDEGSLF+VKSTAGDTHLGGEDFDNRLV FA+EF
Sbjct: 187 KNLKGEKNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHFAEEF 246
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHKKD+ N RA+RRLRTACERAKRTLSSSTEASLEIDALHEG+DFYSKITRARFEEL
Sbjct: 247 KRKHKKDMSGNVRALRRLRTACERAKRTLSSSTEASLEIDALHEGVDFYSKITRARFEEL 306
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
CMDLFR TLAPVERAL DAKLDK SIHDVVLVGGSIRIPKIQKMLQDFF GK+LNLSINP
Sbjct: 307 CMDLFRSTLAPVERALGDAKLDKASIHDVVLVGGSIRIPKIQKMLQDFFCGKALNLSINP 366
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD SS IQDVLLVDV PLSLGIETAGGVMTKI+ERNSRIPCKQQ
Sbjct: 367 DEAVAYGAAVQAAILSGDGSSQIQDVLLVDVTPLSLGIETAGGVMTKIIERNSRIPCKQQ 426
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDL+A+GI
Sbjct: 427 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLNADGI 486
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAKD+STGK E+ITI+NDKGRLSK +IDRML+EAEKY+ +D++QRER+ A+N LESY
Sbjct: 487 LNVSAKDNSTGKQEKITIKNDKGRLSKAEIDRMLSEAEKYREQDERQRERITARNALESY 546
Query: 579 AFAVKQAAEDSGS-KLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F KQA ED+ + KL+D DK +V C+ ++WL+ N+LAEK+EFE RLK Q+ C PI
Sbjct: 547 IFNCKQAVEDAAAGKLTDEDKKAVQDKCAQEMSWLDTNTLAEKDEFEHRLKDCQRVCGPI 606
Query: 638 MTKLHQ 643
M K+HQ
Sbjct: 607 MAKMHQ 612
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241853747|ref|XP_002415926.1| heat shock protein, putative [Ixodes scapularis] gi|215510140|gb|EEC19593.1| heat shock protein, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/504 (78%), Positives = 449/504 (89%), Gaps = 7/504 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE +LG KVS+AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAALAYGLD
Sbjct: 110 MKETAEAFLGRKVSDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 169
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVSVL IDEGS+F+V+STAGDTHLGGEDFDNRLVT+FA+EF
Sbjct: 170 KNLKGERNVLIFDLGGGTFDVSVLTIDEGSMFEVRSTAGDTHLGGEDFDNRLVTYFAEEF 229
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKH+KD+ +N RAVRRLRTACERAKRTLSS+ EA++E+DAL EGIDFYSKITRARFEEL
Sbjct: 230 KRKHRKDLRSNARAVRRLRTACERAKRTLSSTAEATIEVDALFEGIDFYSKITRARFEEL 289
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
CMDLFR TL PVERAL DAK+DK I DVVLVGGS RIPK+QK+L+DFFNGK L++ INP
Sbjct: 290 CMDLFRSTLEPVERALQDAKMDKSRIQDVVLVGGSTRIPKVQKLLKDFFNGKELSMGINP 349
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAA+L+GDTS I+DVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCK
Sbjct: 350 DEAVAYGAAVQAAVLTGDTSENIRDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKTS 409
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
Q+FTTYSDNQ AVTIQVFEGERAMTKDN+LLGTFNLTGIPPAPRGVPKIEVTFDLDANGI
Sbjct: 410 QSFTTYSDNQPAVTIQVFEGERAMTKDNHLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 469
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
L+VSAKD STG+ E I I NDKGRLS++DIDRMLAEAEKYK ED+ QRE+VAA+N LESY
Sbjct: 470 LHVSAKDESTGRQESIRISNDKGRLSREDIDRMLAEAEKYKREDEIQREKVAARNGLESY 529
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
+ VKQAAE++G +L+ +D+ +V C TL+W++ N+LAEKEE++ RLK LQQ C+PIM
Sbjct: 530 VYGVKQAAEEAGDRLTSSDRDAVLDKCKETLSWMDANTLAEKEEYDHRLKDLQQACSPIM 589
Query: 639 TKLHQAGGK-------GPDVEEVD 655
+KLHQ + GP VEEVD
Sbjct: 590 SKLHQGTKQQSAPSHGGPTVEEVD 613
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195395136|ref|XP_002056192.1| GJ10355 [Drosophila virilis] gi|194142901|gb|EDW59304.1| GJ10355 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/509 (79%), Positives = 448/509 (88%), Gaps = 12/509 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
MREIAEVYLGGKV +AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD
Sbjct: 127 MREIAEVYLGGKVKDAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+VK+TAGDTHLGGEDFDNRLV F +EF
Sbjct: 187 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFVEEF 246
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHK +I +N RA+RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKI+RARFEEL
Sbjct: 247 KRKHKSNITSNVRALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKISRARFEEL 306
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MDLFR T+ PVERALNDAK+DK +IHDVVLVGGS RIPKIQ++LQDFF GK LNLSINP
Sbjct: 307 NMDLFRSTIEPVERALNDAKMDKKAIHDVVLVGGSTRIPKIQRLLQDFFGGKQLNLSINP 366
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAIL+G SS IQD+LLVDVAPLSLGIETAGGVMTK+VERN+RIPCKQQ
Sbjct: 367 DEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPLSLGIETAGGVMTKLVERNARIPCKQQ 426
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQNAVTIQV+EGERAMTKDNNLLGTFNLTGIPPAPRGVPKI+VTFDL+A+GI
Sbjct: 427 QTFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIDVTFDLNADGI 486
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAKD+STGK+E+ITI NDKGRLSK +IDRML+EAEKYK EDD+QRERV A+N LE Y
Sbjct: 487 LNVSAKDNSTGKSEKITITNDKGRLSKAEIDRMLSEAEKYKDEDDRQRERVVARNTLEGY 546
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
+ KQA +++ L +ADK+ V CS WL+ N+LAEKEE+E LK Q+ C+PI
Sbjct: 547 IYGCKQAVDEAPAGTLDEADKSKVRDKCSKETAWLDSNTLAEKEEYEHHLKECQRVCSPI 606
Query: 638 MTKLHQAG----GK-------GPDVEEVD 655
M+KLH G GK GP VEEVD
Sbjct: 607 MSKLHGGGQPPKGKSAAGSSTGPTVEEVD 635
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|51849654|dbj|BAD42358.1| heat shock protein 70 [Chironomus yoshimatsui] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/535 (76%), Positives = 452/535 (84%), Gaps = 18/535 (3%)
Query: 139 LKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAG 198
KGE+N + MRE AE YLG KV++AVITVPAYFNDSQRQATKDAG+IAG
Sbjct: 111 FKGEQNRFAPEEISSMVLTKMRETAEAYLGQKVTDAVITVPAYFNDSQRQATKDAGAIAG 170
Query: 199 LNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGD 258
LNVLRIINEPTAAALAYGLDKNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGD
Sbjct: 171 LNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGD 230
Query: 259 THLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318
THLGGEDFDNRLV F +EFKRKH+ D+ N RA+RRLRTACERAKRTLSSSTEAS+EID
Sbjct: 231 THLGGEDFDNRLVNHFVEEFKRKHRSDLSKNIRALRRLRTACERAKRTLSSSTEASIEID 290
Query: 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 378
ALHEGIDFYSKITRARFEE+ MDLFR TL PVERAL DAK+DK IHDVVLVGGS RIPK
Sbjct: 291 ALHEGIDFYSKITRARFEEMNMDLFRSTLEPVERALRDAKMDKNQIHDVVLVGGSTRIPK 350
Query: 379 IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIET 438
IQKMLQDFF GKSLNLSINPDEAVAYGAAVQAAIL+GD+SS IQDVLLVDV PLSLGIET
Sbjct: 351 IQKMLQDFFCGKSLNLSINPDEAVAYGAAVQAAILTGDSSSTIQDVLLVDVTPLSLGIET 410
Query: 439 AGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 498
AGGVMTK++ERNSRIPCKQQ+TFTTYSDNQ AVTIQVFEGERAMTKDNNLLGTFNLTGIP
Sbjct: 411 AGGVMTKLIERNSRIPCKQQKTFTTYSDNQPAVTIQVFEGERAMTKDNNLLGTFNLTGIP 470
Query: 499 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558
PA RGVP+IEVTFDLDANGILNVSAKDSSTG+ E IT++NDKGRLSK DIDRML+EAEKY
Sbjct: 471 PAKRGVPQIEVTFDLDANGILNVSAKDSSTGRQETITLKNDKGRLSKADIDRMLSEAEKY 530
Query: 559 KAEDDKQRERVAAKNKLESYAFAVKQAAEDSGS-KLSDADKTSVSQACSATLTWLEGNSL 617
+ ED+K ++R+ A+N+LESY F KQA ED+ KL+D DK V C + L+WL+ N+L
Sbjct: 531 REEDEKHQQRIQARNQLESYIFGCKQAVEDAPEGKLTDEDKKIVHDKCKSELSWLDSNTL 590
Query: 618 AEKEEFEDRLKTLQQTCTPIMTKLH--------------QAGGK---GPDVEEVD 655
AEKEEFED LK +Q+ C PIM K+H Q+G + GP VEEVD
Sbjct: 591 AEKEEFEDHLKDVQKVCGPIMAKMHGGAGAGQKAGGCGAQSGQRAYAGPTVEEVD 645
|
Source: Chironomus yoshimatsui Species: Chironomus yoshimatsui Genus: Chironomus Family: Chironomidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|17737941|ref|NP_524339.1| heat shock protein cognate 2 [Drosophila melanogaster] gi|13124735|sp|P11146.2|HSP7B_DROME RecName: Full=Heat shock 70 kDa protein cognate 2; AltName: Full=Heat shock 70 kDa protein 87D gi|7299717|gb|AAF54899.1| heat shock protein cognate 2 [Drosophila melanogaster] gi|54650896|gb|AAV37026.1| AT28983p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/506 (79%), Positives = 450/506 (88%), Gaps = 9/506 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
MREIAEVYLGGKV +AV+TVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD
Sbjct: 127 MREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVSVL+IDEGSLF+VK+TAGDTHLGGEDFDNRLV FA+EF
Sbjct: 187 KNLKGERNVLIFDLGGGTFDVSVLSIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFAEEF 246
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHK DI N RA+RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKI+RARFEEL
Sbjct: 247 KRKHKSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKISRARFEEL 306
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MDLFR T+ PVERAL+DAK+DK +IHDVVLVGGS RIPKIQK+LQD F GK LNLSINP
Sbjct: 307 NMDLFRSTMQPVERALSDAKMDKKAIHDVVLVGGSTRIPKIQKLLQDLFGGKQLNLSINP 366
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAIL+G SS IQD+LLVDVAPLSLGIETAGGVMT +VERN+RIPCKQQ
Sbjct: 367 DEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPLSLGIETAGGVMTNLVERNARIPCKQQ 426
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
Q FTTYSDNQNAVTIQV+EGERAMTKDNNLLGTFNLTGIPPAPRGVP+IEV FDL+A+GI
Sbjct: 427 QIFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNLTGIPPAPRGVPQIEVAFDLNADGI 486
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV+AKD+STGK+E+ITI NDKGRLSK +IDRML+EAEKYK EDD+QRERV +KN LE+Y
Sbjct: 487 LNVNAKDNSTGKSEKITISNDKGRLSKAEIDRMLSEAEKYKVEDDRQRERVQSKNNLEAY 546
Query: 579 AFAVKQAAEDSGSK-LSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
+A +QA +D+ S LS+ +++ V CS+ +WL+ NSLAEKEEFE LK Q+ CTPI
Sbjct: 547 IYACRQAVDDAPSGVLSETERSKVRDKCSSEASWLDKNSLAEKEEFESHLKECQRICTPI 606
Query: 638 MTKLH------QAGGKG--PDVEEVD 655
M+K+H + GKG P VEEVD
Sbjct: 607 MSKIHGGKKGKSSMGKGSHPTVEEVD 632
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195037467|ref|XP_001990182.1| GH18372 [Drosophila grimshawi] gi|193894378|gb|EDV93244.1| GH18372 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/507 (79%), Positives = 445/507 (87%), Gaps = 10/507 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
MREIAE YLG KV +AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD
Sbjct: 127 MREIAETYLGTKVKDAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+VK+TAGDTHLGGEDFDNRLV F +EF
Sbjct: 187 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFVEEF 246
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHK +I +N RA+RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKI+RARFEEL
Sbjct: 247 KRKHKSNIASNVRALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKISRARFEEL 306
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MDLFR TL PVERALNDAK+D +IHDVVLVGGS RIPKIQ++LQDFF GK LNLSINP
Sbjct: 307 NMDLFRSTLEPVERALNDAKMDTKAIHDVVLVGGSTRIPKIQRLLQDFFGGKQLNLSINP 366
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAIL+G SS IQD+LLVDV PLSLGIETAGGVMTK+VERN+RIPCKQQ
Sbjct: 367 DEAVAYGAAVQAAILTGVGSSQIQDLLLVDVTPLSLGIETAGGVMTKLVERNARIPCKQQ 426
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQNAVTIQV+EGERAMTKDNNLLGTFNLTGIPPAPRGVPKI+V+FDL+A+GI
Sbjct: 427 QTFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIDVSFDLNADGI 486
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV AKD+STGK+E+ITI NDKGRLSK +IDRML+EAEKYK EDD+QR+RV A+N LE+Y
Sbjct: 487 LNVGAKDNSTGKSEKITITNDKGRLSKAEIDRMLSEAEKYKDEDDRQRDRVQARNTLEAY 546
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
+ KQA E+S LSD+DK++V CS WL+GNSLAEKEE+E LK Q C PI
Sbjct: 547 IYGCKQAVEESPAGVLSDSDKSTVRDKCSEETKWLDGNSLAEKEEYEHHLKDCQGVCAPI 606
Query: 638 MTKLH--------QAG-GKGPDVEEVD 655
M+KLH Q G G GP VEEVD
Sbjct: 607 MSKLHGQSSKAGKQTGSGSGPTVEEVD 633
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|323361567|gb|ADX42268.1| heat shock protein 70-S2 [Stratiomys singularior] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/515 (76%), Positives = 450/515 (87%), Gaps = 18/515 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG V++AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESVTDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V++TAGDTHLGGEDFDNRLV++ ADEF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGGEDFDNRLVSYLADEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTE ++EIDAL+EG+DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTETTIEIDALYEGVDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DK IHD+V+VGGS RIPK+Q MLQ+FFNGKSLNLSINP
Sbjct: 304 CADLFRSTLQPVEKALNDAKMDKSQIHDIVMVGGSTRIPKVQNMLQNFFNGKSLNLSINP 363
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAA+QAAILSGD SS IQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQ
Sbjct: 364 DEAVAYGAAIQAAILSGDKSSKIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQ AVT+QVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI
Sbjct: 424 QTFTTYSDNQPAVTVQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAKD+STG ++ ITI+NDKGRLS+ +ID+MLAEAE+Y ED+KQR+RVAA+N+LE Y
Sbjct: 484 LNVSAKDTSTGNSKNITIKNDKGRLSQAEIDKMLAEAERYAEEDEKQRQRVAARNQLEGY 543
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
F VKQ+ ED+G KLS +DK +V +AC T+ WL+ N+LA+KEEFE R++ L + C+PIM
Sbjct: 544 VFNVKQSVEDAGDKLSQSDKNTVQKACEDTIKWLDNNNLADKEEFEHRMQELTRQCSPIM 603
Query: 639 TKLHQAGGKG------------------PDVEEVD 655
TKLH G + P VEEVD
Sbjct: 604 TKLHTGGAQSQGGSCGQQAGGFGGGRSGPTVEEVD 638
|
Source: Stratiomys singularior Species: Stratiomys singularior Genus: Stratiomys Family: Stratiomyidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 655 | ||||||
| FB|FBgn0001217 | 633 | Hsc70-2 "Heat shock protein co | 0.795 | 0.823 | 0.749 | 1.1e-204 | |
| UNIPROTKB|D4A4S3 | 610 | D4A4S3 "Uncharacterized protei | 0.598 | 0.642 | 0.697 | 3.8e-202 | |
| FB|FBgn0001230 | 635 | Hsp68 "Heat shock protein 68" | 0.748 | 0.771 | 0.748 | 2.9e-199 | |
| FB|FBgn0013275 | 642 | Hsp70Aa "Heat-shock-protein-70 | 0.748 | 0.763 | 0.741 | 6.7e-197 | |
| FB|FBgn0013276 | 642 | Hsp70Ab "Heat-shock-protein-70 | 0.748 | 0.763 | 0.741 | 6.7e-197 | |
| UNIPROTKB|Q9GSU7 | 644 | Hsp70Ab "Major heat shock 70 k | 0.751 | 0.763 | 0.736 | 1.1e-196 | |
| FB|FBgn0013277 | 641 | Hsp70Ba "Heat-shock-protein-70 | 0.743 | 0.759 | 0.737 | 9.8e-196 | |
| FB|FBgn0013278 | 641 | Hsp70Bb "Heat-shock-protein-70 | 0.743 | 0.759 | 0.737 | 9.8e-196 | |
| FB|FBgn0013279 | 641 | Hsp70Bc "Heat-shock-protein-70 | 0.743 | 0.759 | 0.737 | 9.8e-196 | |
| UNIPROTKB|Q9GSU4 | 643 | Hsp70Ba "Major heat shock 70 k | 0.748 | 0.762 | 0.735 | 9.8e-196 |
| FB|FBgn0001217 Hsc70-2 "Heat shock protein cognate 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1980 (702.1 bits), Expect = 1.1e-204, P = 1.1e-204
Identities = 397/530 (74%), Positives = 447/530 (84%)
Query: 135 LDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 194
++ KGE+ + MREIAEVYLGGKV +AV+TVPAYFNDSQRQATKDAG
Sbjct: 103 IEVEFKGERKRFAPEEISSMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAG 162
Query: 195 SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS 254
SIAGLNVLRIINEPTAAALAYGLDKNLKGE+NVLIFDLGGGTFDVSVL+IDEGSLF+VK+
Sbjct: 163 SIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSVLSIDEGSLFEVKA 222
Query: 255 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEAS 314
TAGDTHLGGEDFDNRLV FA+EFKRKHK DI N RA+RRLRTACERAKRTLSSSTEAS
Sbjct: 223 TAGDTHLGGEDFDNRLVNHFAEEFKRKHKSDIKGNARALRRLRTACERAKRTLSSSTEAS 282
Query: 315 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI 374
LEIDALHEGIDFYSKI+RARFEEL MDLFR T+ PVERAL+DAK+DK +IHDVVLVGGS
Sbjct: 283 LEIDALHEGIDFYSKISRARFEELNMDLFRSTMQPVERALSDAKMDKKAIHDVVLVGGST 342
Query: 375 RIPKIQKMLQDFFNGKSLNLSINPDEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSL 434
RIPKIQK+LQD F GK LNLSINPDE IL+G SS IQD+LLVDVAPLSL
Sbjct: 343 RIPKIQKLLQDLFGGKQLNLSINPDEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPLSL 402
Query: 435 GIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNL 494
GIETAGGVMT +VERN+RIPCKQQQ FTTYSDNQNAVTIQV+EGERAMTKDNNLLGTFNL
Sbjct: 403 GIETAGGVMTNLVERNARIPCKQQQIFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNL 462
Query: 495 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAE 554
TGIPPAPRGVP+IEV FDL+A+GILNV+AKD+STGK+E+ITI NDKGRLSK +IDRML+E
Sbjct: 463 TGIPPAPRGVPQIEVAFDLNADGILNVNAKDNSTGKSEKITISNDKGRLSKAEIDRMLSE 522
Query: 555 AEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSK-LSDADKTSVSQACSATLTWLE 613
AEKYK EDD+QRERV +KN LE+Y +A +QA +D+ S LS+ +++ V CS+ +WL+
Sbjct: 523 AEKYKVEDDRQRERVQSKNNLEAYIYACRQAVDDAPSGVLSETERSKVRDKCSSEASWLD 582
Query: 614 GNSLAEKEEFEDRLKTLQQTCTPIMTKLH--QAG----GKG--PDVEEVD 655
NSLAEKEEFE LK Q+ CTPIM+K+H + G GKG P VEEVD
Sbjct: 583 KNSLAEKEEFESHLKECQRICTPIMSKIHGGKKGKSSMGKGSHPTVEEVD 632
|
|
| UNIPROTKB|D4A4S3 D4A4S3 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1410 (501.4 bits), Expect = 3.8e-202, Sum P(3) = 3.8e-202
Identities = 275/394 (69%), Positives = 317/394 (80%)
Query: 258 DTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI 317
DTHLGGEDFDNR+V F EFKRKHKKDI N RAVRRLRTACERAKRTLSSST+AS+EI
Sbjct: 189 DTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 248
Query: 318 DALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIP 377
D+L+EGIDFY+ ITRARFEEL DLFR TL PVE+AL DAKLDK IHD+VLVGGS RIP
Sbjct: 249 DSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIP 308
Query: 378 KIQKMLQDFFNGKSLNLSINPDEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIE 437
KIQK+LQDFFNGK LN SINPDE ILSGD S +QD+LL+DV PLSLGIE
Sbjct: 309 KIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIE 368
Query: 438 TAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGI 497
TAGGVMT +++RN+ IP KQ QTFTTYSDNQ V IQV+EGERAMTKDNNLLG F LTGI
Sbjct: 369 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGI 428
Query: 498 PPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEK 557
PPAPRGVP+IEVTFD+DANGILNVSA D STGK +ITI NDKGRLSK+DI+RM+ EAEK
Sbjct: 429 PPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEK 488
Query: 558 YKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACSATLTWLEGN 615
YKAED+KQR++V++KN LESYAF +K ED K++D DK + C+ ++WL+ N
Sbjct: 489 YKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKN 548
Query: 616 SLAEKEEFEDRLKTLQQTCTPIMTKLHQAGGKGP 649
AEKEEFE + K L++ C PI+TKL+Q+ G P
Sbjct: 549 QTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMP 582
|
|
| FB|FBgn0001230 Hsp68 "Heat shock protein 68" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
Identities = 367/490 (74%), Positives = 429/490 (87%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG V +AVITVPAYFNDSQRQATKDAG+IAG+NVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAGINVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLV FA+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVNHFAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEASLEIDAL+EG DFYSK++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEASLEIDALYEGHDFYSKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+AL DAK+DK IHD+VLVGGS RIPK+Q +LQ+FF GK+LNLSINP
Sbjct: 304 CGDLFRNTLEPVEKALKDAKMDKSQIHDIVLVGGSTRIPKVQNLLQNFFGGKTLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD SS I+DVLLVDVAPLSLGIETAGGVMTK++ERNSRIPCKQ
Sbjct: 364 DEAVAYGAAIQAAILSGDKSSEIKDVLLVDVAPLSLGIETAGGVMTKLIERNSRIPCKQS 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TFTTY+DNQ AVTIQVFEGERA+TKDNN+LGTF+LTG+PPAPRGVPKI+VTFDLDANGI
Sbjct: 424 KTFTTYADNQPAVTIQVFEGERALTKDNNVLGTFDLTGVPPAPRGVPKIDVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV+AK+ TG A+ ITI+NDKGRLS+ DIDRML+EAEKY ED++ R+R+AA+N+LE+Y
Sbjct: 484 LNVTAKEQGTGNAKNITIKNDKGRLSQADIDRMLSEAEKYAEEDERHRQRIAARNQLETY 543
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
F VK+AAE+ G ++S ADK+S+ + CS + WL+ N+ AEKEE+E +LK L+Q C+PIM
Sbjct: 544 LFGVKEAAENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCSPIM 603
Query: 639 TKLHQAGGKG 648
TK+H+ GG G
Sbjct: 604 TKMHKGGGDG 613
|
|
| FB|FBgn0013275 Hsp70Aa "Heat-shock-protein-70Aa" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 6.7e-197, Sum P(2) = 6.7e-197
Identities = 365/492 (74%), Positives = 422/492 (85%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT ADEF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLADEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQDFF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQDFFHGKNLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TY+DNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQA E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +L+ L + C+PI
Sbjct: 544 VFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPI 603
Query: 638 MTKLHQAG-GKG 648
MTK+HQ G G G
Sbjct: 604 MTKMHQQGAGAG 615
|
|
| FB|FBgn0013276 Hsp70Ab "Heat-shock-protein-70Ab" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 6.7e-197, Sum P(2) = 6.7e-197
Identities = 365/492 (74%), Positives = 422/492 (85%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT ADEF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLADEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQDFF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQDFFHGKNLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TY+DNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQA E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +L+ L + C+PI
Sbjct: 544 VFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPI 603
Query: 638 MTKLHQAG-GKG 648
MTK+HQ G G G
Sbjct: 604 MTKMHQQGAGAG 615
|
|
| UNIPROTKB|Q9GSU7 Hsp70Ab "Major heat shock 70 kDa protein Ab" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 1885 (668.6 bits), Expect = 1.1e-196, Sum P(2) = 1.1e-196
Identities = 364/494 (73%), Positives = 424/494 (85%)
Query: 157 VSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYG 216
V M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYG
Sbjct: 122 VKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYG 181
Query: 217 LDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFAD 276
LDKNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+
Sbjct: 182 LDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAE 241
Query: 277 EFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFE 336
EFKRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFE
Sbjct: 242 EFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFE 301
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
ELC DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSI
Sbjct: 302 ELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSI 361
Query: 397 NPDEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCK 456
NPDE ILSGD + IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCK
Sbjct: 362 NPDEAVAYGAAVQAAILSGDQTGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCK 421
Query: 457 QQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 516
Q +TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDAN
Sbjct: 422 QTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDAN 481
Query: 517 GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
GILNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+KQR+R+ ++N LE
Sbjct: 482 GILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKQRQRITSRNALE 541
Query: 577 SYAFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635
SY F VKQA + + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +L+ L + C+
Sbjct: 542 SYVFNVKQAVDQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCS 601
Query: 636 PIMTKLHQAG-GKG 648
PIMTK+HQ G G G
Sbjct: 602 PIMTKMHQQGAGAG 615
|
|
| FB|FBgn0013277 Hsp70Ba "Heat-shock-protein-70Ba" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 9.8e-196, Sum P(2) = 9.8e-196
Identities = 360/488 (73%), Positives = 420/488 (86%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLHQAG 645
MTK+HQ G
Sbjct: 604 MTKMHQQG 611
|
|
| FB|FBgn0013278 Hsp70Bb "Heat-shock-protein-70Bb" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 9.8e-196, Sum P(2) = 9.8e-196
Identities = 360/488 (73%), Positives = 420/488 (86%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLHQAG 645
MTK+HQ G
Sbjct: 604 MTKMHQQG 611
|
|
| FB|FBgn0013279 Hsp70Bc "Heat-shock-protein-70Bc" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 9.8e-196, Sum P(2) = 9.8e-196
Identities = 360/488 (73%), Positives = 420/488 (86%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ALNDAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+K R+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLHQAG 645
MTK+HQ G
Sbjct: 604 MTKMHQQG 611
|
|
| UNIPROTKB|Q9GSU4 Hsp70Ba "Major heat shock 70 kDa protein Ba" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 9.8e-196, Sum P(2) = 9.8e-196
Identities = 362/492 (73%), Positives = 422/492 (85%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG +++AVITVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 124 MKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KNLKGE+NVLIFDLGGGTFDVS+L IDEGSLF+V+STAGDTHLGGEDFDNRLVT A+EF
Sbjct: 184 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVTHLAEEF 243
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+KKD+ +N RA+RRLRTA ERAKRTLSSSTEA++EIDAL EG DFY+K++RARFEEL
Sbjct: 244 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+AL DAK+DKG IHD+VLVGGS RIPK+Q +LQ+FF+GK+LNLSINP
Sbjct: 304 CADLFRNTLQPVEKALTDAKMDKGQIHDIVLVGGSTRIPKVQSLLQEFFHGKNLNLSINP 363
Query: 399 DEXXXXXXXXXXXILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE ILSGD S IQDVLLVDVAPLSLGIETAGGVMTK++ERN RIPCKQ
Sbjct: 364 DEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQT 423
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+TF+TYSDNQ V+IQV+EGERAMTKDNN LGTF+L+GIPPAPRGVP+IEVTFDLDANGI
Sbjct: 424 KTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGI 483
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSAK+ STGKA+ ITI+NDKGRLS+ +IDRM+ EAEKY ED+KQR+R+ ++N LESY
Sbjct: 484 LNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDEKQRQRITSRNALESY 543
Query: 579 AFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPI 637
F VKQ+ E + KL +ADK SV C+ T+ WL+ N+ AEKEEF+ +++ L + C+PI
Sbjct: 544 VFNVKQSVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKMEELTRHCSPI 603
Query: 638 MTKLHQAG-GKG 648
MTK+HQ G G G
Sbjct: 604 MTKMHQQGAGAG 615
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P08107 | HSP71_HUMAN | No assigned EC number | 0.7530 | 0.7374 | 0.7535 | yes | N/A |
| P19378 | HSP7C_CRIGR | No assigned EC number | 0.7377 | 0.7404 | 0.7507 | no | N/A |
| O73885 | HSP7C_CHICK | No assigned EC number | 0.7336 | 0.7404 | 0.7507 | yes | N/A |
| Q71U34 | HSP7C_SAGOE | No assigned EC number | 0.7418 | 0.7404 | 0.7507 | N/A | N/A |
| P08108 | HSP70_ONCMY | No assigned EC number | 0.7300 | 0.7419 | 0.7465 | N/A | N/A |
| P41825 | HSP71_ANOAL | No assigned EC number | 0.7126 | 0.7893 | 0.8078 | N/A | N/A |
| P82910 | HSP70_DROME | No assigned EC number | 0.7379 | 0.7587 | 0.7741 | no | N/A |
| P91902 | HSP70_CERCA | No assigned EC number | 0.7267 | 0.7572 | 0.7774 | N/A | N/A |
| Q91233 | HSP70_ONCTS | No assigned EC number | 0.7129 | 0.7603 | 0.7732 | N/A | N/A |
| P14659 | HSP72_RAT | No assigned EC number | 0.7300 | 0.7389 | 0.7646 | no | N/A |
| Q9GSU4 | HSP72_DROSI | No assigned EC number | 0.7307 | 0.7587 | 0.7729 | N/A | N/A |
| Q9GSU7 | HSP71_DROSI | No assigned EC number | 0.7304 | 0.7618 | 0.7748 | N/A | N/A |
| P63017 | HSP7C_MOUSE | No assigned EC number | 0.7418 | 0.7404 | 0.7507 | no | N/A |
| P16627 | HS71L_MOUSE | No assigned EC number | 0.7109 | 0.7770 | 0.7940 | no | N/A |
| Q9I8F9 | HSP71_ORYLA | No assigned EC number | 0.7120 | 0.7603 | 0.7793 | N/A | N/A |
| Q9BIR7 | HSP75_DROME | No assigned EC number | 0.7335 | 0.7587 | 0.7753 | no | N/A |
| Q5NVM9 | HSP7C_PONAB | No assigned EC number | 0.7418 | 0.7404 | 0.7507 | no | N/A |
| Q4U0F3 | HS71B_BOSMU | No assigned EC number | 0.7209 | 0.7572 | 0.7737 | N/A | N/A |
| Q9BIS2 | HSP73_DROME | No assigned EC number | 0.7335 | 0.7587 | 0.7753 | no | N/A |
| P34933 | HSP72_BOVIN | No assigned EC number | 0.7300 | 0.7389 | 0.7610 | no | N/A |
| Q27975 | HS71A_BOVIN | No assigned EC number | 0.7510 | 0.7374 | 0.7535 | yes | N/A |
| Q8INI8 | HSP72_DROME | No assigned EC number | 0.7335 | 0.7587 | 0.7753 | no | N/A |
| P0CB32 | HS71L_BOVIN | No assigned EC number | 0.7148 | 0.7770 | 0.7940 | no | N/A |
| Q4R888 | HS71L_MACFA | No assigned EC number | 0.7322 | 0.7480 | 0.7644 | N/A | N/A |
| Q9VG58 | HSP74_DROME | No assigned EC number | 0.7316 | 0.7587 | 0.7753 | no | N/A |
| Q9TUG3 | HSP72_CAPHI | No assigned EC number | 0.7321 | 0.7389 | 0.7610 | N/A | N/A |
| Q90473 | HSP7C_DANRE | No assigned EC number | 0.7336 | 0.7404 | 0.7473 | no | N/A |
| P54652 | HSP72_HUMAN | No assigned EC number | 0.7321 | 0.7389 | 0.7574 | no | N/A |
| Q5R7D3 | HSP71_PONAB | No assigned EC number | 0.7530 | 0.7374 | 0.7535 | yes | N/A |
| P02825 | HSP71_DROME | No assigned EC number | 0.7379 | 0.7587 | 0.7741 | no | N/A |
| A5A8V7 | HS71L_PIG | No assigned EC number | 0.7148 | 0.7770 | 0.7940 | no | N/A |
| A2Q0Z1 | HSP7C_HORSE | No assigned EC number | 0.7418 | 0.7404 | 0.7507 | no | N/A |
| P63018 | HSP7C_RAT | No assigned EC number | 0.7418 | 0.7404 | 0.7507 | no | N/A |
| P17156 | HSP72_MOUSE | No assigned EC number | 0.7300 | 0.7389 | 0.7646 | no | N/A |
| Q61696 | HS71A_MOUSE | No assigned EC number | 0.6983 | 0.7893 | 0.8065 | yes | N/A |
| Q7YQC6 | HSP71_CANFA | No assigned EC number | 0.7228 | 0.7572 | 0.7737 | yes | N/A |
| P41827 | HSP74_ANOAL | No assigned EC number | 0.7182 | 0.7893 | 0.8078 | N/A | N/A |
| P41826 | HSP72_ANOAL | No assigned EC number | 0.7145 | 0.7893 | 0.8078 | N/A | N/A |
| P17879 | HS71B_MOUSE | No assigned EC number | 0.6970 | 0.7893 | 0.8052 | yes | N/A |
| P55063 | HS71L_RAT | No assigned EC number | 0.7148 | 0.7770 | 0.7940 | no | N/A |
| P11146 | HSP7B_DROME | No assigned EC number | 0.7984 | 0.7587 | 0.7851 | yes | N/A |
| Q07439 | HSP71_RAT | No assigned EC number | 0.7001 | 0.7893 | 0.8065 | yes | N/A |
| O97125 | HSP68_DROME | No assigned EC number | 0.75 | 0.7587 | 0.7826 | no | N/A |
| P11142 | HSP7C_HUMAN | No assigned EC number | 0.7418 | 0.7404 | 0.7507 | no | N/A |
| Q27965 | HS71B_BOVIN | No assigned EC number | 0.7510 | 0.7374 | 0.7535 | yes | N/A |
| P19120 | HSP7C_BOVIN | No assigned EC number | 0.7418 | 0.7404 | 0.7461 | no | N/A |
| P34931 | HS71L_HUMAN | No assigned EC number | 0.7281 | 0.7480 | 0.7644 | no | N/A |
| P34930 | HS71A_PIG | No assigned EC number | 0.7209 | 0.7572 | 0.7737 | yes | N/A |
| Q6S4N2 | HS71B_PIG | No assigned EC number | 0.7248 | 0.7572 | 0.7737 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 655 | |||
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-174 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-167 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-162 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-145 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-142 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-142 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-134 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-120 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-118 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 1e-106 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-102 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 8e-99 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 9e-99 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 4e-92 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 8e-92 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 3e-89 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 2e-86 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 3e-86 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-82 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 2e-80 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 6e-76 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 4e-72 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 1e-71 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 1e-68 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 2e-67 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 4e-65 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 5e-64 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 6e-63 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 2e-58 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 3e-58 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-57 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 9e-56 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 7e-55 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 2e-54 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 3e-53 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 6e-53 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 2e-52 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 9e-52 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 7e-50 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-49 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-48 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 2e-47 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 6e-47 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 3e-46 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 3e-45 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-42 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-36 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 1e-28 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 3e-28 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 1e-26 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 8e-26 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 2e-24 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 8e-24 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-22 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 6e-19 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 2e-16 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 6e-10 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 9e-10 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-08 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-06 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 6e-06 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 7e-06 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 7e-06 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 1e-05 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 3e-05 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-05 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 5e-05 | |
| COG0849 | 418 | COG0849, ftsA, Cell division ATPase FtsA [Cell div | 5e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 6e-05 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 1e-04 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 1e-04 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 2e-04 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 3e-04 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 4e-04 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 5e-04 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 9e-04 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 0.001 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 0.001 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 0.001 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 0.001 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 0.002 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 820 bits (2121), Expect = 0.0
Identities = 347/493 (70%), Positives = 412/493 (83%), Gaps = 4/493 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG +V +AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 128 MKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 187
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K GEKNVLIFDLGGGTFDVS+L I++G +F+VK+TAGDTHLGGEDFDNRLV F +F
Sbjct: 188 KKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDF 246
Query: 279 KRKHK-KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 337
KRK++ KD+ +N RA+RRLRT CERAKRTLSSST+A++EID+L EGID+ I+RARFEE
Sbjct: 247 KRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEE 306
Query: 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397
LC D FR TL PVE+ L DA +DK S+H+VVLVGGS RIPK+Q +++DFFNGK SIN
Sbjct: 307 LCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSIN 366
Query: 398 PDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQ 457
PDEAVAYGAAVQAAIL+G+ SS +QD+LL+DV PLSLG+ETAGGVMTK++ERN+ IP K+
Sbjct: 367 PDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKK 426
Query: 458 QQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANG 517
Q FTTY+DNQ V IQVFEGERAMTKDNNLLG F+L GIPPAPRGVP+IEVTFD+DANG
Sbjct: 427 SQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANG 486
Query: 518 ILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLES 577
ILNVSA+D STGK+ +ITI NDKGRLSK DIDRM+ EAEKYKAED+ RERV AKN LE+
Sbjct: 487 ILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLEN 546
Query: 578 YAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635
Y +++K +D KLSD+DK ++ +A L WLE N LAEKEEFE + K ++ C
Sbjct: 547 YCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCN 606
Query: 636 PIMTKLHQAGGKG 648
PIMTK++QA G G
Sbjct: 607 PIMTKMYQAAGGG 619
|
Length = 653 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 709 bits (1833), Expect = 0.0
Identities = 285/488 (58%), Positives = 362/488 (74%), Gaps = 13/488 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG V++AVITVPAYFND+QRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K E+NVL+FDLGGGTFDVS+L I +G +F+V +T GDTHLGGEDFDNRLV F +EF
Sbjct: 181 KK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGEDFDNRLVDHFVEEF 238
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHE-GIDFYSKITRARFE 336
K+K+ D+ + RA++RLR A E+AK LSS TE +L G D +TRA+FE
Sbjct: 239 KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFE 298
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
ELC DLF +TL PVE+AL DAKL K I +VVLVGGS RIP +Q+++++FF GK + +
Sbjct: 299 ELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGV 357
Query: 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCK 456
NPDEAVA GAAVQA +LSG ++DVLL+DV PLSLGIET GGVMTK++ RN+ IP K
Sbjct: 358 NPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTK 415
Query: 457 QQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 516
+ Q F+T +DNQ AV IQV++GER M DN LLG+F L GIPPAPRGVP+IEVTFD+DAN
Sbjct: 416 KSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDAN 475
Query: 517 GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
GIL VSAKD TGK ++ITI G LS D+I+RM+ +AE+Y AED K++ER+ AKN+ E
Sbjct: 476 GILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAE 534
Query: 577 SYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAE-KEEFEDRLKTLQQTCT 635
Y ++++++ ++ G KL +ADK V + WL+ E KEE E + + LQ+
Sbjct: 535 EYVYSLEKSLKEEGDKLPEADKKKV----EEAIEWLKEELEGEDKEEIEAKTEELQKVVQ 590
Query: 636 PIMTKLHQ 643
PI +++Q
Sbjct: 591 PIGERMYQ 598
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 675 bits (1744), Expect = 0.0
Identities = 260/522 (49%), Positives = 350/522 (67%), Gaps = 43/522 (8%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAAALAYGLD
Sbjct: 121 LKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 180
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K KG++ +L++DLGGGTFDVS+L I +G +F+V ST GDTHLGG+DFD R++ + ADEF
Sbjct: 181 K--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEF 237
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI-------DA---LHEGIDFYS 328
K+++ D+ + A++RL+ A E+AK LSS+ + EI DA H I
Sbjct: 238 KKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQT--EINLPFITADASGPKHLEI---- 291
Query: 329 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388
K+TRA+FEEL DL +T+ P ++AL DA L I +V+LVGGS R+P +Q+++++FF
Sbjct: 292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF- 350
Query: 389 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 448
GK N +NPDE VA GAA+Q +L+GD ++DVLL+DV PLSLGIET GGVMTK++E
Sbjct: 351 GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIE 406
Query: 449 RNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIE 508
RN+ IP K+ Q F+T +DNQ AVTI V +GER M DN LG FNLTGIPPAPRGVP+IE
Sbjct: 407 RNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466
Query: 509 VTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRER 568
VTFD+DANGI++VSAKD TGK + ITI G LS ++I+RM+ +AE ED K++E
Sbjct: 467 VTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAEEDKKRKEL 525
Query: 569 VAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLK 628
V A+N+ +S + ++ ++ G K+ +K + A L+G +KE + + +
Sbjct: 526 VEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTE 582
Query: 629 TLQQTCTPIMTKLHQAGGKGP---------------DVEEVD 655
L Q + ++Q + EEV
Sbjct: 583 ELTQASQKLGEAMYQQAQAAQGAAGAAAKDDDVVDAEFEEVK 624
|
Length = 627 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 607 bits (1567), Expect = 0.0
Identities = 260/489 (53%), Positives = 341/489 (69%), Gaps = 15/489 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAAALAYGLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K+ K ++ +L+FDLGGGTFDVS+L I +G F+V STAGDTHLGG+DFD R++ + ADEF
Sbjct: 178 KS-KKDEKILVFDLGGGTFDVSILEIGDGV-FEVLSTAGDTHLGGDDFDQRIIDWLADEF 235
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRAR 334
K++ D+ + A++RL+ A E+AK LSS + I A G +TRA+
Sbjct: 236 KKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAK 295
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FEEL DL +T PV +AL DA L I +V+LVGGS RIP +Q++++DFF GK N
Sbjct: 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNK 354
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
S+NPDE VA GAA+Q +L GD ++DVLL+DV PLSLGIET GGVMTK++ERN+ IP
Sbjct: 355 SVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 410
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
K+ Q F+T +DNQ AV I V +GER M DN LG F LTGIPPAPRGVP+IEVTFD+D
Sbjct: 411 TKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDID 470
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGIL+VSAKD TGK + ITI G LS+++I+RM+ EAE ED K++E + A+N
Sbjct: 471 ANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRKEEIEARNN 529
Query: 575 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTC 634
+S A+ ++ +++G KL +K + +A + L+G EE + + + LQQ
Sbjct: 530 ADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGED---VEEIKAKTEELQQAL 586
Query: 635 TPIMTKLHQ 643
+ ++Q
Sbjct: 587 QKLAEAMYQ 595
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 561 bits (1447), Expect = 0.0
Identities = 265/486 (54%), Positives = 350/486 (72%), Gaps = 14/486 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG KV++AVITVPAYFND+QRQATKDA IAGLNVLR+INEPTAAALAYGLD
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K EK VL++DLGGGTFDVS+L I +G +F+V +T GD HLGG+DFDN L+ + EF
Sbjct: 168 K--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEF 224
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K K D+ ++ A++RLR A E+AK LSS+T+ S+ + ++ ID ++TRA+FEEL
Sbjct: 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEEL 284
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+DL +T+ PVE+AL DA L+K I V+LVGGS RIP +Q+++++FF GK SINP
Sbjct: 285 ILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINP 343
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV T I+ERN+ IP K+
Sbjct: 344 DEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKS 399
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
Q F+T +D Q AV I VF+GER M DN LG F L GIPPAPRGVP+IEVTFD+DANGI
Sbjct: 400 QEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV+AKD TGK + ITI+ G LS ++I+RM+ +AE A D K RE V A+N+ ES
Sbjct: 460 LNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESL 518
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
+++++A ++ K+S+ +K + +A + LEG EKEE + +++ LQ+ +
Sbjct: 519 IYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEIKAKIEELQEVTQKLA 573
Query: 639 TKLHQA 644
K +Q
Sbjct: 574 EKKYQQ 579
|
Length = 579 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 521 bits (1344), Expect = 0.0
Identities = 208/256 (81%), Positives = 228/256 (89%), Gaps = 1/256 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG V+ AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 122 MKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 181
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K GE+NVLIFDLGGGTFDVS+L I++G +F+VK+TAGDTHLGGEDFDNRLV F EF
Sbjct: 182 KKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVNHFVQEF 240
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHKKDI N RA+RRLRTACERAKRTLSSST+AS+EID+L EGIDFY+ ITRARFEEL
Sbjct: 241 KRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEEL 300
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ L DAKLDK IHD+VLVGGS RIPK+QK+LQDFFNGK LN SINP
Sbjct: 301 CADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 360
Query: 399 DEAVAYGAAVQAAILS 414
DEAVAYGAAVQAAILS
Sbjct: 361 DEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 530 bits (1367), Expect = 0.0
Identities = 247/472 (52%), Positives = 325/472 (68%), Gaps = 13/472 (2%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
A YLG V++AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAA+LAYGLDK K
Sbjct: 127 ASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDK--K 184
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
+ +L+FDLGGGTFDVS+L + +G +F+V ST+GDTHLGG+DFD ++V + EFK+K
Sbjct: 185 NNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKE 243
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRARFEEL 338
D+ + +A++RL A E+AK LS+ T+ + I A G +TRA+FEEL
Sbjct: 244 GIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DL + PVE AL DAKLDK I +VVLVGGS RIP IQ++++ GK N S+NP
Sbjct: 304 CSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNP 362
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE VA GAAVQA +L+G+ ++D+LL+DV PLSLG+ET GGVMTKI+ RN+ IP K+
Sbjct: 363 DEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKS 418
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+ F+T DNQ V I V +GER + KDN LGTF L GIPPAPRGVP+IEVTFD+DANGI
Sbjct: 419 EVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
L+V+AKD TGK + ITIQ L KD+++RM+ EAEK AED ++RE++ KN+ ES
Sbjct: 479 LSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESL 537
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 630
+ ++ ++ K+S+ K + L+ ++ + + L+
Sbjct: 538 CYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKA 589
|
Length = 621 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 530 bits (1366), Expect = 0.0
Identities = 243/500 (48%), Positives = 334/500 (66%), Gaps = 20/500 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG V++AVITVPAYF D+QRQATKDAG+IAGL VLRIINEPTAAALAYGLD
Sbjct: 121 LKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLD 180
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + E+ +L+FDLGGGTFDVS+L + +G +F+VK+TAG+ HLGG+DFDN +V + + F
Sbjct: 181 KQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENF 238
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL--------EIDALHEGIDFYSKI 330
+++ D+ + A++RLR A E+AK LSS S+ E H ++
Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMEL---- 294
Query: 331 TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK 390
TRA+FEEL DL T+ P+++AL DA L I V+LVGGS RIP +Q+ +Q FF GK
Sbjct: 295 TRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGK 354
Query: 391 SLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERN 450
+ S+NPDEAVA GAA+QA +L G+ ++D+LL+DV PLSLGIET G V TKI+ERN
Sbjct: 355 QPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERN 410
Query: 451 SRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVT 510
+ IP + Q F+T +D Q +V I V +GERAM KDN LG F LTGIPPAPRGVP+IEV+
Sbjct: 411 TTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVS 470
Query: 511 FDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVA 570
F++D NGIL VSA+D TG+ + I I N G LS ++I+RM EAEKY ED ++++ +
Sbjct: 471 FEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIE 529
Query: 571 AKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 630
KN+ +S ++ + +++G +S+ K Q L ++ EE + +L+
Sbjct: 530 LKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNI-SLEELKQQLEEF 588
Query: 631 QQTCTPIMTKLHQAGGKGPD 650
QQ I +++Q GG
Sbjct: 589 QQALLAIGAEVYQQGGSQTT 608
|
Length = 653 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 510 bits (1316), Expect = e-174
Identities = 250/499 (50%), Positives = 344/499 (68%), Gaps = 16/499 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG KV +AVITVPAYFNDSQRQATKDAG IAGL+VLRIINEPTAAALA+G+D
Sbjct: 162 MKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMD 221
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KN K + ++DLGGGTFD+S+L I G +F+VK+T G+T LGGEDFD R++ + EF
Sbjct: 222 KN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEGID-FYSKITRAR 334
K++ D+ + A++RLR A E AK LSS T+ + I A G K++RA+
Sbjct: 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAK 338
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
EEL DL ++T+ P E+ + DA + K ++DV+LVGG R+PK+ + ++ F GK +
Sbjct: 339 LEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSK 397
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
+NPDEAVA GAA+QA +L G+ I+D+LL+DV PLSLGIET GGV T+++ RN+ IP
Sbjct: 398 GVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIP 453
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
K+ Q F+T +DNQ V I+VF+GER M DN LLG F+L GIPPAPRGVP+IEVTFD+D
Sbjct: 454 TKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVD 513
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGI+N+SA D STGK + ITIQ+ G LS ++I++M+ EAE+YK +D+K++E V AKN+
Sbjct: 514 ANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYKEQDEKKKELVDAKNE 572
Query: 575 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTC 634
E+ ++V++ D K+SDADK + Q + + L + + +D+ K LQ+
Sbjct: 573 AETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDV---DSIKDKTKQLQEAS 629
Query: 635 TPIMTKLHQAGGKGPDVEE 653
I + ++ G E
Sbjct: 630 WKISQQAYKQGNSDNQQSE 648
|
Length = 663 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 492 bits (1270), Expect = e-167
Identities = 224/465 (48%), Positives = 311/465 (66%), Gaps = 17/465 (3%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
A YLG V+ AVITVPAYFNDSQRQAT+DAG IAGL V RI+NEPTAAALAYGLD+
Sbjct: 127 ASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDR--S 184
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
+ VL+FDLGGGTFDVS+L + G +F+VK+T+GDT LGG DFD R+V + A++F K
Sbjct: 185 SSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKE 243
Query: 283 KKDILANTRAVRRLRTACERAKRTLS--SSTEASLE-IDALHEG-IDFYSKITRARFEEL 338
D+ + +A++RL A E+AK LS S T+ SL I A +G +++ R +FE L
Sbjct: 244 GIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DL + L PV+RAL DA L I +VVLVGGS R+P +Q++++ + N ++NP
Sbjct: 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE VA GAA+QA IL+G+ ++D+LL+DV PLSLG+ET GGVM K++ RN+ IP ++
Sbjct: 363 DEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRS 418
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
F+T +NQ++V I V++GER M DN LG F L+GIPPAPRGVP+++V FD+DANGI
Sbjct: 419 DVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGI 478
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
L VSA D +TG+ + +TIQ LS+ +++RM+ EAE ED ++RER+ +N+ +
Sbjct: 479 LQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTL 537
Query: 579 AFA----VKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAE 619
++ AA + G ++ + +V A LE + E
Sbjct: 538 IAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE 582
|
Length = 668 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 481 bits (1239), Expect = e-162
Identities = 242/493 (49%), Positives = 326/493 (66%), Gaps = 20/493 (4%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
A +L KV++AVITVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA+LAYG +K K
Sbjct: 164 ASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEK--K 221
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
+ +L+FDLGGGTFDVSVL + +G +F+V ST+GDTHLGG+DFD R+V + A FK+
Sbjct: 222 SNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDE 280
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG---IDFYSKITRARFE 336
D+L + +A++RL A E+AK LSS T+ S+ I A +G ID + +TRA+FE
Sbjct: 281 GIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHID--TTLTRAKFE 338
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
ELC DL + PVE AL DAKL I +V+LVGGS RIP +Q++++ GK N+++
Sbjct: 339 ELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTV 397
Query: 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCK 456
NPDE VA GAAVQA +L+G+ S D++L+DV PLSLG+ET GGVMTKI+ RN+ +P
Sbjct: 398 NPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTS 453
Query: 457 QQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 516
+ + F+T +D Q +V I V +GER +DN LG+F L GIPPAPRGVP+IEV FD+DAN
Sbjct: 454 KSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDAN 513
Query: 517 GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
GIL+VSA D TGK + ITI L KD+++RM+ EAEK+ ED ++R+ V KN+ +
Sbjct: 514 GILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQAD 572
Query: 577 SYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636
S + ++ ++ G K+ K V + S ++ +D + L Q
Sbjct: 573 SVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGST---QKMKDAMAALNQEVMQ 629
Query: 637 IMTKLHQAGGKGP 649
I L+ G G
Sbjct: 630 IGQSLYNQPGAGG 642
|
Length = 673 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 434 bits (1120), Expect = e-145
Identities = 194/452 (42%), Positives = 281/452 (62%), Gaps = 27/452 (5%)
Query: 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217
++R+ AE LGG++ AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTAAA+AYGL
Sbjct: 136 ALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGL 195
Query: 218 DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADE 277
D +G + ++DLGGGTFD+S+L + +G +F+V +T GD+ LGG+DFD+ L AD
Sbjct: 196 DSGQEG--VIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGDDFDHLL----ADW 248
Query: 278 FKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 337
+ + R L A AK LS + + + AL +G ITR +F
Sbjct: 249 ILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV-ALWQGE-----ITREQFNA 302
Query: 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397
L L ++TL RAL DA ++ + +VV+VGGS R+P +++ + +FF L SI+
Sbjct: 303 LIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLT-SID 361
Query: 398 PDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQ 457
PD+ VA GAA+QA IL+G+ + D+LL+DV PLSLG+ET GG++ KI+ RN+ IP +
Sbjct: 362 PDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVAR 419
Query: 458 QQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANG 517
Q FTT+ D Q A+ I V +GER + D L F L GIPP G +I VTF +DA+G
Sbjct: 420 AQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADG 479
Query: 518 ILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQR-----ERVAAK 572
+L+V+A + STG I ++ G L+ D+I RML ++ + AE+D Q ++V A+
Sbjct: 480 LLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSH-AEEDMQARALAEQKVEAE 537
Query: 573 NKLESYAFAVKQAAEDSGSKLSDADKTSVSQA 604
LE A++ A G LS A++ ++ A
Sbjct: 538 RVLE----ALQAALAADGDLLSAAERAAIDAA 565
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-142
Identities = 204/474 (43%), Positives = 285/474 (60%), Gaps = 22/474 (4%)
Query: 140 KGEKNVLIFDLGGGT---FDVS------MREIAEVYLGGKVSEAVITVPAYFNDSQRQAT 190
G ++ GT +VS +++ AE LGG + AVITVPAYF+D+QRQAT
Sbjct: 89 DGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQAT 148
Query: 191 KDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLF 250
KDA +AGLNVLR++NEPTAAA+AYGLDK E ++DLGGGTFDVS+L + +G +F
Sbjct: 149 KDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VF 205
Query: 251 QVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS 310
+V +T GD+ LGG+DFD+ L + K+ L N R L A AK L+
Sbjct: 206 EVLATGGDSALGGDDFDHALAKWI---LKQLGISADL-NPEDQRLLLQAARAAKEALT-- 259
Query: 311 TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 370
S+E+D +G DF K+TR FE L L ++TL+ RAL DA L I VVLV
Sbjct: 260 DAESVEVDFTLDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLV 319
Query: 371 GGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVA 430
GGS R+P +++ + + F + L I+PD+ VA GAA+QA +L+G+ D+LL+DV
Sbjct: 320 GGSTRMPLVRRAVAELFGQEPLT-DIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVT 376
Query: 431 PLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLG 490
PLSLGIET GG++ KI+ RN+ IP + Q FTTY D Q A+ I V +GER + +D L
Sbjct: 377 PLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLA 436
Query: 491 TFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDR 550
F L GIPP G +I VTF +DA+G+L VSA++ STG + I ++ G LS ++I+R
Sbjct: 437 RFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIER 495
Query: 551 MLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQA 604
ML ++ K+ ED R K + E A++ A G LS+ ++ ++ A
Sbjct: 496 MLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAA 549
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 418 bits (1076), Expect = e-142
Identities = 164/253 (64%), Positives = 203/253 (80%), Gaps = 2/253 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG KV AV+TVPAYFND+QRQATKDAG+IAGLNV+RIINEPTAAA+AYGLD
Sbjct: 124 MKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K GEKN+L+FDLGGGTFDVS+L ID G +F+V +T GDTHLGGEDFD R++ F F
Sbjct: 184 KK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEHFIKLF 241
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K+KH KDI + RA+++LR E+AKR LSS + +EI++L +G DF +TRA+FEEL
Sbjct: 242 KKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFEEL 301
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MDLF++TL PV++ L DA L K I ++VLVGGS RIPK+Q++L++FFNGK + INP
Sbjct: 302 NMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINP 361
Query: 399 DEAVAYGAAVQAA 411
DEAVAYGAAVQA
Sbjct: 362 DEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 409 bits (1051), Expect = e-134
Identities = 220/468 (47%), Positives = 316/468 (67%), Gaps = 16/468 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE +LG KVS AV+T PAYFND+QRQATKDAG+IAGLNV+R++NEPTAAALAYG+D
Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + + ++DLGGGTFD+SVL I G +F+VK+T GDTHLGGEDFD L + +EF
Sbjct: 208 KT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID----FYSKITRAR 334
++ D+ A++R+R A E+AK LSS+ E + + + D I+R++
Sbjct: 265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSK 324
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FE + L +++AP ++ + DA ++ I+DVVLVGG R+PK+ + ++ FF K
Sbjct: 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFR 383
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
+NPDEAVA GAA +L GD ++ ++L+DV PLSLGIET GGV T+++ +N+ IP
Sbjct: 384 GVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIP 439
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
K+ QTF+T +DNQ V I+VF+GER M DN ++G F+L GIPPAPRGVP+IEVTFD+D
Sbjct: 440 TKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDID 499
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGI +V+AKD +TGK + ITI + G LSK+ I++M+ ++E++ D +RE V +N
Sbjct: 500 ANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEADRVKRELVEVRNN 558
Query: 575 LESYA-FAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKE 621
E+ A +Q E +SDA+K +V + +E ++A+ +
Sbjct: 559 AETQLTTAERQLGE--WKYVSDAEKENVKTLVAELRKAMENPNVAKDD 604
|
Length = 657 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 360 bits (927), Expect = e-120
Identities = 138/253 (54%), Positives = 181/253 (71%), Gaps = 2/253 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG V+EAVITVPAYFND+QR+ATK+A IAGLNV+R+INEPTAAALAYGLD
Sbjct: 119 LKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLD 178
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + + +L+FDLGGGTFDVS++ ++ G F+V +T GD HLGG+DFDN L + A++F
Sbjct: 179 KKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGGDDFDNALADYLAEKF 237
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K K D+ + RA+RRL+ A E+AK LSSS EA++ + L G D ++TR FEEL
Sbjct: 238 KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEEL 297
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
L +T+ VER L DA L I V+LVGGS RIP ++++L++ F K SI+P
Sbjct: 298 IRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKK-PLRSIDP 356
Query: 399 DEAVAYGAAVQAA 411
DEAVA GAA+ AA
Sbjct: 357 DEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 356 bits (915), Expect = e-118
Identities = 146/261 (55%), Positives = 191/261 (73%), Gaps = 12/261 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG KV+EAVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAALAYGLD
Sbjct: 122 LKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 181
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K KG + +L++DLGGGTFDVS+L I +G +F+V +T GDTHLGG+DFD R++ + +EF
Sbjct: 182 K--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGDDFDQRIIDWLVEEF 238
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG---IDFYSKITR 332
K++ D+ + A++RL+ A E+AK LSS TE + I A G ++ +TR
Sbjct: 239 KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEM--TLTR 296
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
A+FEEL DL +T+ PV++AL DAKL I +V+LVGGS RIP +Q+++++ F GK
Sbjct: 297 AKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEP 355
Query: 393 NLSINPDEAVAYGAAVQAAIL 413
N +NPDE VA GAA+Q +L
Sbjct: 356 NKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-106
Identities = 145/259 (55%), Positives = 186/259 (71%), Gaps = 8/259 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG V AVITVPAYFNDSQRQATKDAG IAGLNVLR+INEPTAAALAYGLD
Sbjct: 123 MKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 182
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K K +K + ++DLGGGTFD+S+L I +G +F+VKST GDT LGGEDFDN L+ EF
Sbjct: 183 K--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGGEDFDNALLRHLVKEF 239
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSS--TEASLE-IDALHEG-IDFYSKITRAR 334
K++ D+ + A++RLR A E+AK LSSS T+ +L I A G K+TRA+
Sbjct: 240 KKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAK 299
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FE L DL ++T+ P ++AL DA + K I +V+LVGG R+PK+Q+ +++ F GK +
Sbjct: 300 FESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GKEPSK 358
Query: 395 SINPDEAVAYGAAVQAAIL 413
+NPDEAVA GAA+Q +L
Sbjct: 359 GVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 316 bits (813), Expect = e-102
Identities = 124/156 (79%), Positives = 134/156 (85%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NTVFDAKRLIGRKF D +Q D+KHWPF VV+ GGKP I VEYKGE K F PEE
Sbjct: 54 VAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEE 113
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
ISSMVLTKM+EIAE YLG V+ AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTA
Sbjct: 114 ISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 173
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK GE+NVLIFDLGGGTFDVS+ I +
Sbjct: 174 AAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIED 209
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 307 bits (787), Expect = 8e-99
Identities = 142/255 (55%), Positives = 189/255 (74%), Gaps = 3/255 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG +V EAVITVPAYFNDSQRQATKDAG++AGL VLRIINEPTAAALAYG+D
Sbjct: 122 LKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGID 181
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K K KN+ ++DLGGGTFD+S+L I++G +F+VK+T GDT LGGEDFDN +V + EF
Sbjct: 182 KR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+K D+ N +A++R++ A E+AK LSSS E+ +E+ L ITR FE+L
Sbjct: 240 KRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQL 299
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+ ++T+ P ++ L DA L K I +V+LVGG R+P IQ ++Q+ F GK + S+NP
Sbjct: 300 RKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKKPSKSVNP 358
Query: 399 DEAVAYGAAVQAAIL 413
DEAVA GAA+Q +IL
Sbjct: 359 DEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 9e-99
Identities = 128/276 (46%), Positives = 171/276 (61%), Gaps = 21/276 (7%)
Query: 147 IFDLGGGTFDV---------SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIA 197
+ LG F S++E AE YLG V+EAVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 198 GLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAG 257
GL V R+INEPTAAALAYGL E L+FDLGGGTFDVSVL + +G + +V+++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 258 DTHLGGEDFDNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTLSSSTEASL 315
D +LGGEDF L + F +KH + L + + RL A ERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSE-LARLLRAAERAKRALSDQEEAEM 246
Query: 316 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIR 375
+ EG + +TR FEE+C L + P+ERAL DA+L I +++LVGG+ R
Sbjct: 247 SVR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATR 304
Query: 376 IPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411
+P ++K++ F G+ + +NPDE VA GAA+QA
Sbjct: 305 MPVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 4e-92
Identities = 129/260 (49%), Positives = 173/260 (66%), Gaps = 6/260 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++EIAE L GKV++ VI+VP+YF D+QR+A DA IAGLN LR++NE TA ALAYG+
Sbjct: 124 LKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYGIY 183
Query: 219 KN--LKGEK--NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274
K + EK NV D+G + VS++A ++G L +V STA D +LGG DFD L F
Sbjct: 184 KTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFDRNLGGRDFDEALFEHF 242
Query: 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334
A EFK K+K D+L+N +A RL ACE+ K+ LS++TEA L I+ L E D KI R
Sbjct: 243 AKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREE 302
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FEELC L + P+E+AL +A L K IH V +VGGS RIP +++++ F GK L+
Sbjct: 303 FEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELST 361
Query: 395 SINPDEAVAYGAAVQAAILS 414
++N DEAVA G A+Q A+LS
Sbjct: 362 TLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 8e-92
Identities = 129/281 (45%), Positives = 169/281 (60%), Gaps = 23/281 (8%)
Query: 139 LKGEKNVLIFDLGGGT---FDVS------MREIAEVYLGGKVSEAVITVPAYFNDSQRQA 189
+++F GT +VS ++E AE LGG++ AVITVPAYF+D+QRQA
Sbjct: 88 EGKNGGIILFHTQQGTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQA 147
Query: 190 TKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249
TKDA +AGLNVLR++NEPTAAALAYGLDK K E ++DLGGGTFDVS+L + +G +
Sbjct: 148 TKDAARLAGLNVLRLLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-V 204
Query: 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS 309
F+V +T GD+ LGG+DFD L +K+ L + L +AK LS
Sbjct: 205 FEVLATGGDSALGGDDFDQLLAEL----LLKKYGLKSLISDEDQAELLLIARKAKEALSG 260
Query: 310 STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVL 369
+ E +E+ G DF ITR FE+L L ++TL ++AL DA L I V+L
Sbjct: 261 AEE--VEVR----GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVIL 314
Query: 370 VGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 410
VGGS RIP +Q+ + FF K L INPDE VA GAA+QA
Sbjct: 315 VGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (740), Expect = 3e-89
Identities = 168/440 (38%), Positives = 243/440 (55%), Gaps = 31/440 (7%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
AE L +++AVITVPA+FND+ R A IAG VLR+I EPTAAA AYGL+KN K
Sbjct: 133 AEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQK 192
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
G L++DLGGGTFDVS+L I EG +FQV +T GD LGG D D + + ++F +
Sbjct: 193 G--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPN 249
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDL 342
D L ++AK TL+ + S D + I + E+L + L
Sbjct: 250 SIDTL----------QLAKKAKETLTY--KDSFNNDNIS--------INKQTLEQLILPL 289
Query: 343 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402
+T+ + L A I V+LVGG+ RIP I+ L F L+ I+PD+AV
Sbjct: 290 VERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAV 346
Query: 403 AYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 462
+GAA+QA L + + LL+DV PLSLG+E GG++ KI+ RN+ IP + FT
Sbjct: 347 VWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFT 402
Query: 463 TYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVS 522
TY+DNQ + + +GER M D L F L G+PP G + EVTF +DA+GIL+VS
Sbjct: 403 TYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVS 462
Query: 523 AKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAV 582
A + + + I ++ + G + K +ID ML A K D R A + E+ F +
Sbjct: 463 AYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNI 521
Query: 583 KQAAEDSGSKLSDADKTSVS 602
++A + + LS+++ + ++
Sbjct: 522 ERAIAELTTLLSESEISIIN 541
|
Length = 595 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 2e-86
Identities = 118/155 (76%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDG-GKPKIQVEYKGEIKKFAPE 67
VA NP+NTVFDAKRLIGRKF+D +Q D+KHWPF V + G KP I+V Y+GE K F PE
Sbjct: 59 VARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPE 118
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
EISSMVL KM+EIAE YLG +V +AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPT
Sbjct: 119 EISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPT 178
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
AAA+AYGLDK GEKNVLIFDLGGGTFDVS+ I
Sbjct: 179 AAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTI 213
|
Length = 653 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 3e-86
Identities = 110/154 (71%), Positives = 132/154 (85%), Gaps = 1/154 (0%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
NP+NT+FD KRLIGRKF+D+++Q+DIK P+ VV+ GKP I+V+ KGE K F+PEE
Sbjct: 56 ATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEE 115
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS+MVLTKM+EIAE YLG KV AV+TVPAYFND+QRQATKDAG+IAGLNV+RIINEPTA
Sbjct: 116 ISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTA 175
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
AA+AYGLDK GEKN+L+FDLGGGTFDVS+ I
Sbjct: 176 AAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTI 208
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 1e-82
Identities = 118/254 (46%), Positives = 171/254 (67%), Gaps = 2/254 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIA+ LG + VITVP YF++ Q+ A ++A AG NVLRII+EP+AAALAYG+
Sbjct: 123 MKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIG 182
Query: 219 KNLKGEK-NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADE 277
++ K VL++ LGG + DV++L ++ G +++V +T+ D +LGGE F L + A+E
Sbjct: 183 QDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLGGESFTETLSQYLANE 241
Query: 278 FKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 337
FKRK K+D+ N RA+ +L A E AK+ LS+ A+ +++L+EGIDF ++RARFE
Sbjct: 242 FKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFES 301
Query: 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397
LC LF + L P+E+ L A L K I+ VVL GGS RIPK+Q++++D F + SI+
Sbjct: 302 LCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSIS 361
Query: 398 PDEAVAYGAAVQAA 411
PDE +A GAA QA
Sbjct: 362 PDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 2e-80
Identities = 106/157 (67%), Positives = 121/157 (77%), Gaps = 4/157 (2%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPE 67
NPKNTVF KRLIGRKF D +Q DIKH P+ VV G ++V Y GE F PE
Sbjct: 54 AVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPE 111
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+IS+MVL K++E AE YLG V++AVITVPAYFND+QRQATKDAG IAGLNVLRIINEPT
Sbjct: 112 QISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPT 171
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AAALAYGLDK E+NVL+FDLGGGTFDVS+ EI +
Sbjct: 172 AAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGD 207
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 6e-76
Identities = 111/267 (41%), Positives = 155/267 (58%), Gaps = 14/267 (5%)
Query: 159 MREIAEVYLGG-KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217
+++AE + V + VITVP YF +QRQA DA +AGLNVL ++N+ TAAAL Y L
Sbjct: 122 AKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYAL 181
Query: 218 DKNLKGEK--NVLIFDLGGGTFDVSVLAI---------DEGSLFQVKSTAGDTHLGGEDF 266
D+ + K VL +D+G G+ +V+ +V D LGG +F
Sbjct: 182 DRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREF 241
Query: 267 DNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI 324
D RL A EF+ KHK D+ N RA+ +L RAK LS+++EA + I++L++ I
Sbjct: 242 DLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDI 301
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 384
DF +KITRA FEELC DLF + +AP+++AL A L I V L+GG+ R+PK+Q+ L
Sbjct: 302 DFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELS 361
Query: 385 DFFNGKSLNLSINPDEAVAYGAAVQAA 411
+ K L +N DEA A GAA AA
Sbjct: 362 EAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 4e-72
Identities = 127/295 (43%), Positives = 176/295 (59%), Gaps = 20/295 (6%)
Query: 137 KNLKGEKNVLIFDLGGGTFDVS-----------MREIAEVYLGGKVSEAVITVPAYFNDS 185
K L T V+ +R++AE YLG V +AVI+VPA F++
Sbjct: 113 KINSRNGAFFFSVLTNETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEK 172
Query: 186 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAID 245
QR AT A ++AGL VLR+INEPTAAALAYGL K + NVL+ DLGGGT DVS+L
Sbjct: 173 QRNATVKAANLAGLEVLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK- 230
Query: 246 EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAK- 304
+G +F ++ AG+ LGG+DF+ RL+ + + K+ K + N ++RLR A E AK
Sbjct: 231 QGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGK-VPDNKEDIQRLRQAVEAAKI 289
Query: 305 -RTLSSSTEASLEIDALHEG---IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 360
TL ST SL + L EG + F ++TR FE L DLF++ L P+E L + LD
Sbjct: 290 NLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLD 349
Query: 361 KGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415
K + ++VLVGGS RIP+I++++ FF GK N S++P+ AV G A+QA I+ G
Sbjct: 350 KEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 1e-71
Identities = 97/155 (62%), Positives = 122/155 (78%), Gaps = 9/155 (5%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KRL+GR+ E+ +Q+DIK P+ +V D G VE G KK+ P+EI
Sbjct: 60 TNPENTIFSIKRLMGRRDEE--VQKDIKLVPYKIVKADNGDAW--VEIDG--KKYTPQEI 113
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+M+L K+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
ALAYGLDK KG++ +L++DLGGGTFDVS+ EI +
Sbjct: 174 ALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGD 206
|
Length = 627 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 1e-68
Identities = 110/264 (41%), Positives = 157/264 (59%), Gaps = 11/264 (4%)
Query: 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217
++E AE +LG KV+ AV++VP +F+D Q +A A AGL VL++I EP AA LAY
Sbjct: 124 RLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLAYDA 183
Query: 218 DKN---LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274
+ ++NV++ D GG DVSV+A+ G L+ + +TA D LGG+ D+ LV F
Sbjct: 184 GEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHDPGLGGDTLDDALVKHF 242
Query: 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334
A EF +K K D N RA+ +LR E K+TLS+ST A+ +++L EGIDF+S I R R
Sbjct: 243 AKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLR 302
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK---- 390
FE L +FRQ A V A+ A LD I +V+LVGG+ PK+ L F
Sbjct: 303 FELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTIT 362
Query: 391 ---SLNLSINPDEAVAYGAAVQAA 411
+++ +++P E VA G A+QA+
Sbjct: 363 APITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 2e-67
Identities = 93/156 (59%), Positives = 120/156 (76%), Gaps = 6/156 (3%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
NP+NT+F KR +GRKF++ + + + + VV +GG K++++ G K + P+E
Sbjct: 58 AVTNPENTIFSIKRFMGRKFDEVEEERKVPYKV--VVDEGGNYKVEIDSNG--KDYTPQE 113
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS+M+L K++E AE YLG KV+EAVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTA
Sbjct: 114 ISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 173
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AALAYGLDK KG + +L++DLGGGTFDVS+ EI +
Sbjct: 174 AALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGD 207
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 4e-65
Identities = 95/155 (61%), Positives = 120/155 (77%), Gaps = 9/155 (5%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV--SDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT++ KRLIGR+F+D ++Q+DIK+ P+ +V S+G VE G KK++P +I
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNG---DAWVEAHG--KKYSPSQI 115
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
+ VL KM+E AE YLG V AVITVPAYFNDSQRQATKDAG IAGLNVLR+INEPTAA
Sbjct: 116 GAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAA 175
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
ALAYGLDK K +K + ++DLGGGTFD+S+ EI +
Sbjct: 176 ALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQK 208
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 5e-64
Identities = 92/153 (60%), Positives = 123/153 (80%), Gaps = 7/153 (4%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 71
NP+NT++ KR +GR+F+ ++ E+ K P+ VV DGG +++V+ K ++ P+EIS+
Sbjct: 59 NPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGGDVRVKVDGK----EYTPQEISA 112
Query: 72 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAL 131
M+L K+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAAAL
Sbjct: 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 172
Query: 132 AYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AYGLDK+ K ++ +L+FDLGGGTFDVS+ EI +
Sbjct: 173 AYGLDKS-KKDEKILVFDLGGGTFDVSILEIGD 204
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 6e-63
Identities = 89/152 (58%), Positives = 113/152 (74%), Gaps = 4/152 (2%)
Query: 8 SVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPE 67
NP+NTV D KRLIGRKF+D +Q K + D G P I V + KK++PE
Sbjct: 54 QALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPE 109
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
E+S+++L K++E AE YLG V+EAVITVPAYFND+QR+ATK+A IAGLNV+R+INEPT
Sbjct: 110 EVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPT 169
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
AAALAYGLDK + + +L+FDLGGGTFDVS+
Sbjct: 170 AAALAYGLDKKDEKGRTILVFDLGGGTFDVSL 201
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 2e-58
Identities = 107/262 (40%), Positives = 161/262 (61%), Gaps = 8/262 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE L V + V++VP ++ D++R++ DA IAGLN LR++NE TA ALAYG+
Sbjct: 124 LKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIY 183
Query: 219 KN-----LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
K + +NV+ D+G + VSV A ++G L +V +TA DT LGG FD LV +
Sbjct: 184 KQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAFDTTLGGRKFDEVLVNY 242
Query: 274 FADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHEGIDFYSKITR 332
F +EF +K+K DI + RA+ RL CE+ K+ +S+ +++ L I+ ID + R
Sbjct: 243 FCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTMNR 302
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
+F E+C DL + P+ L AKL K I+ V +VGG+ RIP +++ + FF GK +
Sbjct: 303 GKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GKEV 361
Query: 393 NLSINPDEAVAYGAAVQAAILS 414
+ ++N DEAVA G A+Q AILS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 3e-58
Identities = 93/257 (36%), Positives = 148/257 (57%), Gaps = 7/257 (2%)
Query: 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL-- 217
++ + +++ I VP ++ + QR DA IAGLN +RI+N+ TAA ++YG+
Sbjct: 123 KDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFK 182
Query: 218 DKNLKGE---KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274
+GE + V D+G ++ S++A +G L +V TA D H GG DFD + F
Sbjct: 183 TDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTACDKHFGGRDFDLAITEHF 241
Query: 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334
ADEFK K+K DI N +A R+ TA E+ K+ LS++T A ++++ +D S+++R
Sbjct: 242 ADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREE 301
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
EEL L + PV +AL AKL + V ++GG+ RIP +++ + + F GK L+
Sbjct: 302 LEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLST 360
Query: 395 SINPDEAVAYGAAVQAA 411
++N DEA+A GAA A
Sbjct: 361 TLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 2e-57
Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 8/262 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE L V++ VI+VP++F D++R++ DA I GLN LR++N+ TA AL YG+
Sbjct: 124 LKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIY 183
Query: 219 K-NLKGE----KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
K +L + V+ D+G F VS A ++G L +V TA D LGG++FD +LV
Sbjct: 184 KQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTAFDPFLGGKNFDEKLVEH 242
Query: 274 FADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHEGIDFYSKITR 332
F EFK K+K D + RA+ RL CE+ K+ +SS ST+ L I+ D K+ R
Sbjct: 243 FCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNR 302
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
++FEELC DL ++ P+ L L + V +VGG+ RIP +++ + FF GK +
Sbjct: 303 SQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDV 361
Query: 393 NLSINPDEAVAYGAAVQAAILS 414
+ ++N DEAVA G A+Q AILS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 9e-56
Identities = 89/154 (57%), Positives = 115/154 (74%), Gaps = 6/154 (3%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEE 68
A++P+NT F KRLIGR+F+D ++Q +K + +V G I G KK++P +
Sbjct: 58 ALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYT--NG--KKYSPSQ 113
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
I+S VL K+++ AE YLG +V EAVITVPAYFNDSQRQATKDAG++AGL VLRIINEPTA
Sbjct: 114 IASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTA 173
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
AALAYG+DK K KN+ ++DLGGGTFD+S+ I
Sbjct: 174 AALAYGIDKR-KENKNIAVYDLGGGTFDISILNI 206
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 7e-55
Identities = 91/154 (59%), Positives = 112/154 (72%), Gaps = 5/154 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 70
+NP+NT + KR IGRKF + I E+ K + V +D I++E K F+PEEIS
Sbjct: 60 INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDS-NGNIKIECPALNKDFSPEEIS 116
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+ VL K+ E A YLG V++AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAA+
Sbjct: 117 AQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAS 176
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
LAYGLDK K + +L+FDLGGGTFDVS+ E+ +
Sbjct: 177 LAYGLDK--KNNETILVFDLGGGTFDVSILEVGD 208
|
Length = 621 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 190 bits (483), Expect = 2e-54
Identities = 102/268 (38%), Positives = 166/268 (61%), Gaps = 8/268 (2%)
Query: 153 GTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 212
G ++E +E L V++ VI++P++F D++R++ A +AGLN LR++NE TA A
Sbjct: 118 GMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVA 177
Query: 213 LAYGLDKN-----LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFD 267
LAYG+ K + +NV+ D+G + VSV A ++G L +V +T D +LGG +FD
Sbjct: 178 LAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-KVLATTFDPYLGGRNFD 236
Query: 268 NRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHEGIDF 326
LV +F DEFK K+K ++ N+RA+ RL CE+ K+ +S+ +++ L I+ +D
Sbjct: 237 EALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDV 296
Query: 327 YSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDF 386
SK+ RA+FE+LC L + P++ + A L + I+ + +VGG+ RIP +++ + F
Sbjct: 297 SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 387 FNGKSLNLSINPDEAVAYGAAVQAAILS 414
F K ++ ++N DEAVA G A+Q AILS
Sbjct: 357 FL-KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-53
Identities = 92/159 (57%), Positives = 119/159 (74%), Gaps = 11/159 (6%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEIS 70
NP+NTVF KRLIGR++++ +++ K P+ +V + G +E +G KK++P +I
Sbjct: 100 NPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDA--WIEAQG--KKYSPSQIG 155
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+ VL KM+E AE YLG KV +AVITVPAYFNDSQRQATKDAG IAGL+VLRIINEPTAAA
Sbjct: 156 AFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAA 215
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGG 169
LA+G+DKN K + ++DLGGGTFD+S+ EI LGG
Sbjct: 216 LAFGMDKN--DGKTIAVYDLGGGTFDISILEI----LGG 248
|
Length = 663 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 6e-53
Identities = 83/157 (52%), Positives = 114/157 (72%), Gaps = 13/157 (8%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDG-GKPKI---QVEYKGEIKKFAP 66
+NP+NT ++ KR IGR++++ + + K P+T+ + G +I ++E ++FAP
Sbjct: 60 LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLE-----REFAP 112
Query: 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEP 126
EE+S+M+L K+ + A YLG V+ AVITVPAYFNDSQRQAT+DAG IAGL V RI+NEP
Sbjct: 113 EELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEP 172
Query: 127 TAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
TAAALAYGLD+ + VL+FDLGGGTFDVS+ E+
Sbjct: 173 TAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVG 207
|
Length = 668 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-52
Identities = 79/153 (51%), Positives = 106/153 (69%), Gaps = 5/153 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPF-TVVSDGGKPKIQVEYKGEIKKFAPEEI 69
N KNTV + KRLIGRKF+D ++Q+++K PF V GK I+V Y GE K F+PE++
Sbjct: 57 SNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQV 116
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
+M+LTK++EIAE L GKV++ VI+VP+YF D+QR+A DA IAGLN LR++NE TA
Sbjct: 117 LAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTAT 176
Query: 130 ALAYGLDKN--LKGEK--NVLIFDLGGGTFDVS 158
ALAYG+ K + EK NV D+G + VS
Sbjct: 177 ALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVS 209
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 9e-52
Identities = 92/155 (59%), Positives = 107/155 (69%), Gaps = 24/155 (15%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KR IGR KI VE G KK+ PEEI
Sbjct: 63 VDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEI 100
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+M+LTK++E AE YLG KV++AVITVPAYFND+QRQATKDA IAGLNVLR+INEPTAA
Sbjct: 101 SAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAA 160
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
ALAYGLDK EK VL++DLGGGTFDVS+ EI +
Sbjct: 161 ALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGD 193
|
Length = 579 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 7e-50
Identities = 85/148 (57%), Positives = 113/148 (76%), Gaps = 6/148 (4%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 71
N +NTV+ KR IGR+++D +E+ P+T V G + V+ +G + + P+EIS+
Sbjct: 61 NAENTVYSIKRFIGRRWDDT--EEERSRVPYTCVK-GRDDTVNVQIRG--RNYTPQEISA 115
Query: 72 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAL 131
M+L K+++ AE YLG V++AVITVPAYF D+QRQATKDAG+IAGL VLRIINEPTAAAL
Sbjct: 116 MILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAAL 175
Query: 132 AYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
AYGLDK + E+ +L+FDLGGGTFDVS+
Sbjct: 176 AYGLDKQDQ-EQLILVFDLGGGTFDVSI 202
|
Length = 653 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 1e-49
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 8/146 (5%)
Query: 13 PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSM 72
PKNT+ KRL+G+ ED I++ + P +GG + P E+S+
Sbjct: 59 PKNTISSVKRLMGKSIED--IKKSFPYLPILEGKNGGIILFHTQ----QGTVTPVEVSAE 112
Query: 73 VLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 132
+L ++E AE LGG++ AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTAAALA
Sbjct: 113 ILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALA 172
Query: 133 YGLDKNLKGEKNVLIFDLGGGTFDVS 158
YGLDK K E ++DLGGGTFDVS
Sbjct: 173 YGLDK--KKEGIYAVYDLGGGTFDVS 196
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-48
Identities = 71/125 (56%), Positives = 87/125 (69%), Gaps = 12/125 (9%)
Query: 56 EYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIA 115
+Y+ ++F EE+SS+VL ++E AE YLG V+EAVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 116 GLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE----IAEV------ 165
GL V R+INEPTAAALAYGL E L+FDLGGGTFDVS+ E + EV
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGD 192
Query: 166 -YLGG 169
YLGG
Sbjct: 193 NYLGG 197
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-47
Identities = 87/155 (56%), Positives = 109/155 (70%), Gaps = 7/155 (4%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEI 69
+NP+NT F KR IGRK + + E+ K + VV D G K+ G K+FA EEI
Sbjct: 97 VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEI 152
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+ VL K+ + A +L KV++AVITVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA
Sbjct: 153 SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 212
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
+LAYG +K K + +L+FDLGGGTFDVS+ E+ +
Sbjct: 213 SLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGD 245
|
Length = 673 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 6e-47
Identities = 87/153 (56%), Positives = 118/153 (77%), Gaps = 6/153 (3%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEIS 70
NP++T + KRLIGR+FED+ IQ+DIK+ P+ +V + G +Q G K+++P +I
Sbjct: 85 NPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ---DGNGKQYSPSQIG 141
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+ VL KM+E AE +LG KVS AV+T PAYFND+QRQATKDAG+IAGLNV+R++NEPTAAA
Sbjct: 142 AFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAA 201
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
LAYG+DK + + ++DLGGGTFD+S+ EIA
Sbjct: 202 LAYGMDKT--KDSLIAVYDLGGGTFDISVLEIA 232
|
Length = 657 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-46
Identities = 77/150 (51%), Positives = 104/150 (69%), Gaps = 9/150 (6%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFT-VVSDGGKPKIQVEYKGEIKKFAPEE 68
A +PKNT+ KR +GR D IQ+ H P+ V S+ G P I+ +G +P E
Sbjct: 75 AQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA-QGLK---SPVE 128
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
+S+ +L +R+ AE LGG++ AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTA
Sbjct: 129 VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTA 188
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVS 158
AA+AYGLD +G + ++DLGGGTFD+S
Sbjct: 189 AAIAYGLDSGQEG--VIAVYDLGGGTFDIS 216
|
Length = 616 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 3e-45
Identities = 72/149 (48%), Positives = 98/149 (65%), Gaps = 2/149 (1%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEIS 70
NP+NT++DAKR IG+ F ++++ + + F V + E K PEEI
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
S ++ K+R++AE YLG V +AVI+VPA F++ QR AT A ++AGL VLR+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
LAYGL K + NVL+ DLGGGT DVS+
Sbjct: 200 LAYGLHKK-QDVFNVLVVDLGGGTLDVSL 227
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-42
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 8/146 (5%)
Query: 13 PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSM 72
PKNT+ KRL+GR ED K + P+ V DG +++ P E+S+
Sbjct: 59 PKNTISSVKRLMGRSIEDIKTFSIL---PYRFV-DGPGEMVRLRTVQGTV--TPVEVSAE 112
Query: 73 VLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 132
+L K+++ AE LGG + AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTAAA+A
Sbjct: 113 ILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVA 172
Query: 133 YGLDKNLKGEKNVLIFDLGGGTFDVS 158
YGLDK E ++DLGGGTFDVS
Sbjct: 173 YGLDKA--SEGIYAVYDLGGGTFDVS 196
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-36
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 71
N NT+ K+++GR + D Q++ ++ G+PK ++ + + K +P+E++
Sbjct: 58 NAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAK 117
Query: 72 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAL 131
++ KM+EIA+ LG + VITVP YF++ Q+ A ++A AG NVLRII+EP+AAAL
Sbjct: 118 LIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAAL 177
Query: 132 AYGLDKNLKGEK-NVLIFDLGGGTFDVSMREI 162
AYG+ ++ K VL++ LGG + DV++ +
Sbjct: 178 AYGIGQDSPTGKSYVLVYRLGGTSTDVTILRV 209
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 1e-28
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 70
+ NTV + KR GR F D +Q++ ++ + +V G ++V Y GE F+ E+I+
Sbjct: 58 HANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQIT 117
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+M+LTK++E AE L V++ VI+VP++F D++R++ DA I GLN LR++N+ TA A
Sbjct: 118 AMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVA 177
Query: 131 LAYGLDK-NLKGE----KNVLIFDLGGGTFDVS 158
L YG+ K +L + V+ D+G F VS
Sbjct: 178 LNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVS 210
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-28
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPK-IQVEYKGEIKKFAPEE 68
A P+ K L+G+ +D + P + + + + ++ EE
Sbjct: 55 ARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEE-YSVEE 113
Query: 69 ISSMVLTKMREIAEVYLGG-KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+ +M+L +++AE + V + VITVP YF +QRQA DA +AGLNVL ++N+ T
Sbjct: 114 LVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGT 173
Query: 128 AAALAYGLDKNLKGEK--NVLIFDLGGGTFDVSMREIAEV 165
AAAL Y LD+ + K VL +D+G G+ ++ E + V
Sbjct: 174 AAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPV 213
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-26
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIK--HWPFTVVSDGGKPKIQVEYKGEIKKFAPEEI 69
N KNT+ + + L+G+ F + + P V+ GG + + E + E+
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEV 117
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
+ L +++E AE +LG KV+ AV++VP +F+D Q +A A AGL VL++I EP AA
Sbjct: 118 TVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAA 177
Query: 130 ALAYGLDKN---LKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFND 184
LAY + ++NV++ D GG DVS+ IA V + T+ A +D
Sbjct: 178 LLAYDAGEPTEDEALDRNVVVADFGGTRTDVSV--IA-------VRGGLYTILATAHD 226
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-26
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLR 121
K+ EI++ + ++ AE L +++AVITVPA+FND+ R A IAG VLR
Sbjct: 114 KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 122 IINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
+I EPTAAA AYGL+KN KG L++DLGGGTFDVS+ I E
Sbjct: 174 LIAEPTAAAYAYGLNKNQKG--CYLVYDLGGGTFDVSILNIQE 214
|
Length = 595 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPE 67
V N KNTV KR GR F D +Q + + +V G I+V Y E + F E
Sbjct: 55 VISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTE 114
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
++++M+LTK++E AE L V + V++VP ++ D++R++ DA IAGLN LR++NE T
Sbjct: 115 QVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETT 174
Query: 128 AAALAYGLDKN-----LKGEKNVLIFDLGGGTFDVSM 159
A ALAYG+ K + +NV+ D+G + VS+
Sbjct: 175 AVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSV 211
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-24
Identities = 65/201 (32%), Positives = 111/201 (55%), Gaps = 21/201 (10%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPE 67
+ N +NT+ K+L GR F+D +Q + P+ + G ++V Y E + FA E
Sbjct: 55 IVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE 114
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+++ M+L K++E +E L V++ VI++P++F D++R++ A +AGLN LR++NE T
Sbjct: 115 QVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETT 174
Query: 128 AAALAYGLDKN-----LKGEKNVLIFDLGGGTFDVS--------MREIA---EVYLGGK- 170
A ALAYG+ K + +NV+ D+G + VS ++ +A + YLGG+
Sbjct: 175 AVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRN 234
Query: 171 VSEAVITVPAYFNDSQRQATK 191
EA++ YF D + K
Sbjct: 235 FDEALVD---YFCDEFKTKYK 252
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 1e-22
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKH-WPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 70
N KNTV + KR+IG + +++ KH V D K +V + GE F+ +++
Sbjct: 56 NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 115
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+M + K+++ + +++ I VP ++ + QR DA IAGLN +RI+N+ TAA
Sbjct: 116 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAG 175
Query: 131 LAYGL--DKNLKGE---KNVLIFDLGGGTFDVSM 159
++YG+ +GE + V D+G ++ S+
Sbjct: 176 VSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSI 209
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 6e-19
Identities = 75/295 (25%), Positives = 114/295 (38%), Gaps = 72/295 (24%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQ----RQATKDAGSI---AGLNVLRIINEPTAA 211
+++ AE LG ++ VI P +F QA + AG + EP AA
Sbjct: 104 LKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEPIAA 163
Query: 212 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDT------HLGGED 265
AL Y + L E+ VL+ D+GGGT D S++ + S D +GG D
Sbjct: 164 ALDYE--QRLTREELVLVVDIGGGTSDFSLVRL-GPSRRGRADRRADILAHSGVRIGGTD 220
Query: 266 FDNRLV-------------------------TFFADEFKRKHK-------------KDIL 287
FD RL ++FAD HK +++
Sbjct: 221 FDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFAD-LATWHKINFLYTPKTLRELRELA 279
Query: 288 ANT---RAVRRLRT------------ACERAKRTLSSSTEASLEIDALHEGIDFYSKITR 332
+ + RL T A E AK LSS E +++D + G++ + +TR
Sbjct: 280 RDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFVEVGLE--APVTR 337
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387
A FE + A V+ AL A + +I V L GGS +P +++ F
Sbjct: 338 AEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARF 392
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 30/282 (10%)
Query: 155 FDVSMREIAEVYLGGKVSEA----VITVPAYFNDSQRQATKDAGSIAGLNV-------LR 203
++ ++ E+ + Y G+ + V+TVPA ++D+ +QA ++A AGL L
Sbjct: 120 YEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGPDRLL 179
Query: 204 IINEPTAAALA---YGL-DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVK-STAGD 258
I+ EP AAAL L NLK L+ D GGGT D++V + ++K AG
Sbjct: 180 IVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKELAAGS 239
Query: 259 THLGGEDF-DNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI 317
L G F D + + + L E KR+ + + +
Sbjct: 240 GGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDNDTNIV 299
Query: 318 DALHEGIDFYSKITRARFEELCM------DLFRQTLAPVERALNDAKLDKGSIHD----V 367
+ R EL + LF + + + + +L++ D +
Sbjct: 300 LPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEE-QLEQAEKGDKVKYI 358
Query: 368 VLVGGSIRIPKIQKMLQDFFNGKSLNLSI--NPDEAVAYGAA 407
LVGG P ++ L++ F+ + + + +P AV GA
Sbjct: 359 FLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-10
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 45/252 (17%)
Query: 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNLKGEKNVLIF 230
VI VP+ + +R+A DA AG + +I EP AAA+ GLD KG ++
Sbjct: 91 PRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVV 147
Query: 231 DLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANT 290
D+GGGT +++V+++ G + V S + +GG+DFD ++ + + K ++L
Sbjct: 148 DIGGGTTEIAVISL--GGI--VVSKS--IRVGGDDFDEAIIRYV------RRKYNLLIGE 195
Query: 291 RAVRRLRTACERAKRTLSS----STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQT 346
RTA E K + S E ++E+ +G D + + R E+ + R+
Sbjct: 196 ------RTA-EEIKIEIGSAYPLDEEETMEV----KGRDLVTGLPRTV--EVTSEEVREA 242
Query: 347 LA-PVERALNDAK--LDK------GSIHD--VVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
L P++ + K L+K I D +VL GG + + +++ + G + ++
Sbjct: 243 LKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVA 301
Query: 396 INPDEAVAYGAA 407
+P VA GA
Sbjct: 302 EDPLTCVAKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 77 MREIAEVYLGGKVSEA----VITVPAYFNDSQRQATKDAGSIAGLNV-------LRIINE 125
+ E+ + Y G+ + V+TVPA ++D+ +QA ++A AGL L I+ E
Sbjct: 124 LEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGPDRLLIVLE 183
Query: 126 PTAAALA---YGL-DKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAV 175
P AAAL L NLK L+ D GGGT D+++ E+ V ++ E
Sbjct: 184 PEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVE-PLRLKELA 236
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQ----RQATKDAGSI---AGLNV 119
E++ + L ++++ AE LG ++ VI P +F QA + AG
Sbjct: 94 EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKD 153
Query: 120 LRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
+ EP AAAL Y + L E+ VL+ D+GGGT D S+
Sbjct: 154 VEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSL 191
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN-----DSQRQAT---KDAGSIAGLN 118
E++ ++ +++ AE L +++AVI P F ++ RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 119 VLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
+ EP AA L + + L EK VL+ D+GGGT D SM
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSM 225
|
Length = 450 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-06
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 71/264 (26%)
Query: 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNV----- 227
VI VP+ + +R+A ++A AG + +I EP AAA+ GL V
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVG 153
Query: 228 -LIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDI 286
++ D+GGGT +V+V+ SL + + + G++ D +V + +RK+
Sbjct: 154 NMVVDIGGGTTEVAVI-----SLGGI-VYSESIRVAGDEMDEAIVQY----VRRKYN--- 200
Query: 287 LANTRAVRRL----RTACERAKRTLSSST----EASLEIDALHEGIDFYSKITRARFEEL 338
L RTA E K + S+ E S+E+ G D + + + E+
Sbjct: 201 ---------LLIGERTA-EEIKIEIGSAYPLDEEESMEV----RGRDLVTGLPKTI--EI 244
Query: 339 CMDLFRQTLAP--------VERALNDAK-------LDKGSIHDVVLVGGSIRIPKIQKML 383
+ R+ LA V+ L +D+G +VL GG + + K+L
Sbjct: 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRG----IVLTGGGALLRGLDKLL 300
Query: 384 QDFFNGKSLNLSINPDEAVAYGAA 407
+ G ++++ +P VA G
Sbjct: 301 SEET-GLPVHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 160 REIAEVYLGGKVSEAVITVPAYFN-----DSQRQAT---KDAGSIAGLNVLRIINEPTAA 211
++ AE L +++AVI P F ++ RQA + A AG + EP AA
Sbjct: 138 KQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAA 197
Query: 212 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242
L + + L EK VL+ D+GGGT D S+L
Sbjct: 198 GLDF--EATLTEEKRVLVVDIGGGTTDCSML 226
|
Length = 450 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ E LG + + A +P + + + AGL VL +++EPTAAA LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF-FADE 277
+ + D+GGGT +S++ ++ G TH+ N ++ A++
Sbjct: 141 -------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLEEAEQ 192
Query: 278 FKRKHKK 284
+KR HKK
Sbjct: 193 YKRGHKK 199
|
Length = 277 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ E LG +++ A +P + + + AG+ VL +++EPTAAA +
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI- 107
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF-FADE 277
KN + D+GGGT +S+L ++ G TH+ ++F A+E
Sbjct: 108 ------KNGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGISFEEAEE 160
Query: 278 FKRKHKKD 285
+KR HK +
Sbjct: 161 YKRGHKDE 168
|
Length = 239 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 21/122 (17%)
Query: 44 VVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS 103
VV DG I V++ G + ++ ++++ E LG +++ A +P +
Sbjct: 30 VVRDG----IVVDFLG----------AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEG 75
Query: 104 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
+ + AG+ VL +++EPTAAA + KN + D+GGGT +S+ +
Sbjct: 76 DPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI-------KNGAVVDVGGGTTGISILKKG 128
Query: 164 EV 165
+V
Sbjct: 129 KV 130
|
Length = 239 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 23/157 (14%)
Query: 44 VVSDGGKPKIQVEYKGEIKKFAPE---EISSMVLTKMREIAEVYLGGKVSEAVITVPAYF 100
V G+ + + + + L ++ + A L ++ IT P
Sbjct: 14 VADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGV 73
Query: 101 NDSQRQAT----------KDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDL 150
R+ A G + ++N+ AAALA GL K E VL+ DL
Sbjct: 74 PKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDL 131
Query: 151 GGGTFDVS--------MREIAEVYLGGKVSEAVITVP 179
G GT ++ + E+ + ++ + +
Sbjct: 132 GTGTTGIAIVEDGKGGVGAAGELGIAEALAAVLNLLD 168
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQAT----------KDAGSIAGLNVLRIINEPTAAA 212
A L ++ IT P R+ A G + ++N+ AAA
Sbjct: 54 ALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAA 113
Query: 213 LAYGLDKNLKGEKNVLIFDLGGGTFDVSV 241
LA GL K E VL+ DLG GT +++
Sbjct: 114 LAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 42/225 (18%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL--FQVKS 254
AGL V I+ EP A+ALA L ++ K E V + D+GGGT D+++ G+L V
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 255 TAGD--THLGGEDFDNRLVTFFADEFKRKHKKDI--LANTRAVRRLRTACERAKRTLSSS 310
GD T + A+ K K+ + LA+ + + R ++ S
Sbjct: 233 VGGDHVTKDIAKGLKTPFEE--AERIKIKYGSALISLADDEETIEVPSVGSDIPRQVTRS 290
Query: 311 TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 370
S+I AR EE+ ++L V+ L + L VVL
Sbjct: 291 ---------------ELSEIIEARVEEI-LEL-------VKAELRKSGLPNHLPGGVVLT 327
Query: 371 GGSIRIPKIQKMLQDFF-----NGKSLNLSINPDEAV--AYGAAV 408
GG ++P I ++ + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
|
Length = 418 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234
+I +P +++A ++A AG + +I EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
GT D++VL++ G + S + G+ FD ++ + ++K+K
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
|
Length = 336 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 90 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNLKGEKNVLIF 148
VI VP+ + +R+A DA AG + +I EP AAA+ GLD KG ++
Sbjct: 91 PRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVV 147
Query: 149 DLGGGTFDVSMREIAEVYLGGKV 171
D+GGGT ++++ I+ LGG V
Sbjct: 148 DIGGGTTEIAV--IS---LGGIV 165
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 21/122 (17%)
Query: 44 VVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS 103
VV DG I V++ ++ ++ ++++ E LG + + A +P
Sbjct: 62 VVRDG----IVVDFFEAVE----------IVRRLKDTLEKQLGIRFTHAATAIPPGTEQG 107
Query: 104 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
+ + + AGL VL +++EPTAAA LD + + D+GGGT +S+ +
Sbjct: 108 DPRISINVIESAGLEVLHVLDEPTAAADVLQLD-------DGGVVDIGGGTTGISIVKKG 160
Query: 164 EV 165
+V
Sbjct: 161 KV 162
|
Length = 277 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 64/321 (19%)
Query: 122 IINEPTAAA--------LAYGLD-KNLKG---EKNVLIFDLGGGTF-DVSMREIAEVYLG 168
++NEP+ A LA G + K + G V + L G D + E Y
Sbjct: 23 VLNEPSVVAINTKTKKVLAVGNEAKKMLGRTPGNIVAVRPLKDGVIADFEVTEAMLKYFI 82
Query: 169 GKVSEA--------VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 220
KV VI VP+ + +R+A K+A AG + +I EP AAA+ GL
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 221 LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKR 280
++ ++ D+GGGT +V+V+++ G + KS + G++ D ++ + ++
Sbjct: 141 VEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEAIIKY----IRK 190
Query: 281 KHKKDILANTRAVRRLRTACERAKRTLSS--STEASLEIDALHEGIDFYS------KITR 332
K+ I RTA ER K + S TE +++ G D + +I+
Sbjct: 191 KYNLLI--------GERTA-ERIKIEIGSAYPTEEEEKMEI--RGRDLVTGLPKTIEISS 239
Query: 333 ARFEELCMDLFRQTLAPVERALNDAK-------LDKGSIHDVVLVGGSIRIPKIQKMLQD 385
E + + V+ L +D+G +VL GG + + K+L D
Sbjct: 240 EEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRG----IVLTGGGALLRGLDKLLSD 295
Query: 386 FFNGKSLNLSINPDEAVAYGA 406
G ++++ +P VA G
Sbjct: 296 ET-GLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 43 TVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFND 102
VV DG I V++ G + ++ +++ E LG +++ A +P ++
Sbjct: 56 DVVRDG----IVVDFIGAVT----------IVRRLKATLEEKLGRELTHAATAIPPGTSE 101
Query: 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
+A + AGL V +++EPTAAA G+ N + D+GGGT +S
Sbjct: 102 GDPRAIINVVESAGLEVTHVLDEPTAAAAVLGI-------DNGAVVDIGGGTTGIS---- 150
Query: 163 AEVYLGGKV 171
+ GKV
Sbjct: 151 --ILKDGKV 157
|
Length = 267 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234
VI VP+ +R+A K++ AG + +I EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
GT +V+V+++ G + +S +GG++FD ++ +
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINY 192
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 48/313 (15%)
Query: 122 IINEPTAAA--------LAYGLD-KNLKGE---KNVLIFDLGGGT---FDVS---MREI- 162
I+NEP+ A LA G + KN+ G+ K V + + G +D++ +++I
Sbjct: 26 ILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQIM 85
Query: 163 --AEVYLGGKVSE--AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
A +G + V+ P+ +R+A DA G + +I EP AAA+ G D
Sbjct: 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GAD 143
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
+ ++ D+GGGT +V++++ G + S +GG+ D +V+F
Sbjct: 144 LPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLDEDIVSFV---- 193
Query: 279 KRKHKKDILANTRAVRRLRTACERA---KRTLSSSTEASLEIDALHEGIDFYSKITRARF 335
+ K ++L R +++ A + + L + I SK +
Sbjct: 194 --RKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAM 251
Query: 336 EELCMDLF---RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
E + + R TL L+ +D+G V+L GG + I++ L + +
Sbjct: 252 RESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGIKEWLSEEIV-VPV 306
Query: 393 NLSINPDEAVAYG 405
+++ NP E+VA G
Sbjct: 307 HVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 341 DLFRQTLAPVERALNDA-----KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
DL R L V AL D+ + I + L+GG + P ++ML D F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFG-----TP 417
Query: 396 I---NPDEAVAYGAAVQAAILSG 415
+ +E A GAA+ AA G
Sbjct: 418 VDVPEGEEGPALGAAILAAWALG 440
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++ E LG +++ A +P ++ +A + AGL V +++EPTAAA G+
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGI- 134
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTA----GDTHLG-------GEDFD 267
N + D+GGGT +S+L +G +V +A G TH+ G F+
Sbjct: 135 ------DNGAVVDIGGGTTGISIL--KDG---KVVYSADEPTGGTHMSLVLAGAYGISFE 183
Query: 268 NRLVTFFADEFKR--KHKKDILANTRAV 293
A+++KR KH K+I + V
Sbjct: 184 E------AEQYKRDPKHHKEIFPVVKPV 205
|
Length = 267 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 152
VI VP+ +R+A K++ AG + +I EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 153 GTFDVSMREIAEVYLGGKV 171
GT E+A + LGG V
Sbjct: 160 GT-----TEVAVISLGGIV 173
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+DL R L+GG + P ++++ D N + +
Sbjct: 384 GLDLLRALGLKSTEIR--------------LIGGGAKSPAWRQIIADIMNAEVVVPDT-- 427
Query: 399 DEAVAYGAAVQAA-ILSGDTSSAIQDVLLVD 428
+EA A GAA+QAA L+G+ + + L D
Sbjct: 428 EEAAALGAAIQAAWCLTGEDGADVALAELCD 458
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234
VI VP+ D +R+A K+A AG + +I EP AA A G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAA--AIGAGLPIMEPTGSMVVDIGG 162
Query: 235 GTFDVSVLA 243
GT +V+V++
Sbjct: 163 GTTEVAVIS 171
|
Length = 342 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 152
+I +P +++A ++A AG + +I EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 153 GTFDVSMREIAEVYLGGKVSEAVITV 178
GT D IA + LGG V+ + I V
Sbjct: 157 GTTD-----IAVLSLGGIVTSSSIKV 177
|
Length = 336 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 655 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.97 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.96 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.96 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.96 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.94 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.92 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.91 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.91 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.88 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.87 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.53 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.31 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.23 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.21 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.2 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.13 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.03 | |
| KOG0100|consensus | 663 | 99.03 | ||
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 98.85 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 98.83 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 98.77 | |
| KOG0103|consensus | 727 | 98.75 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 98.7 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.67 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 98.66 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 98.66 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 98.63 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 98.62 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 98.61 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 98.61 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.6 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 98.58 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.57 | |
| PTZ00281 | 376 | actin; Provisional | 98.57 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 98.56 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.56 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 98.54 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 98.53 | |
| KOG0102|consensus | 640 | 98.52 | ||
| PTZ00452 | 375 | actin; Provisional | 98.5 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 98.5 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 98.49 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 98.49 | |
| KOG0101|consensus | 620 | 98.47 | ||
| KOG0104|consensus | 902 | 98.47 | ||
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 98.42 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 98.41 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.35 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 98.29 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 98.12 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 98.06 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.05 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 98.01 | |
| KOG0679|consensus | 426 | 97.93 | ||
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 97.92 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.87 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.85 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.81 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.78 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 97.76 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 97.57 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 97.49 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 97.26 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.25 | |
| PRK11678 | 450 | putative chaperone; Provisional | 97.22 | |
| KOG0797|consensus | 618 | 97.2 | ||
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 97.19 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 96.89 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.81 | |
| KOG0677|consensus | 389 | 96.81 | ||
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 96.7 | |
| KOG0676|consensus | 372 | 96.41 | ||
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 96.16 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 96.1 | |
| PRK15027 | 484 | xylulokinase; Provisional | 95.99 | |
| PLN02669 | 556 | xylulokinase | 95.98 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 95.81 | |
| PRK04123 | 548 | ribulokinase; Provisional | 95.23 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 95.2 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 95.15 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 95.13 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 95.09 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 95.06 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 95.05 | |
| KOG2517|consensus | 516 | 95.05 | ||
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 95.04 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 94.93 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 94.88 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 94.83 | |
| PLN02295 | 512 | glycerol kinase | 94.57 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 94.55 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 94.42 | |
| KOG2531|consensus | 545 | 94.36 | ||
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 94.18 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 94.12 | |
| KOG0680|consensus | 400 | 93.88 | ||
| PLN02666 | 1275 | 5-oxoprolinase | 93.67 | |
| KOG0681|consensus | 645 | 92.84 | ||
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 92.41 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 91.33 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 91.15 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 90.45 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 90.17 | |
| COG0145 | 674 | HyuA N-methylhydantoinase A/acetone carboxylase, b | 88.95 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 88.95 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 88.11 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 87.93 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 87.63 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 87.0 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 86.82 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 86.56 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 86.5 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 85.05 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 84.69 | |
| COG2377 | 371 | Predicted molecular chaperone distantly related to | 84.62 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 83.78 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 83.5 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 82.89 | |
| PRK09604 | 332 | UGMP family protein; Validated | 82.26 | |
| PLN02920 | 398 | pantothenate kinase 1 | 80.9 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 80.02 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-127 Score=939.00 Aligned_cols=563 Identities=60% Similarity=0.974 Sum_probs=539.1
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEc-CceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK-GEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~ev~a~~l~~l~~ 79 (655)
||.+|++|+..||+|||++.||||||.|+|+.||+++++|||++++.+++|.++|... |+.+.|+||||+||+|.++++
T Consensus 83 iGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe 162 (663)
T KOG0100|consen 83 IGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKE 162 (663)
T ss_pred hhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999987 668899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.||+|+|.++..+|+|||+||+
T Consensus 163 ~AEayLGkkv~~AVvTvPAYFN---------------------------------------------------------- 184 (663)
T KOG0100|consen 163 TAEAYLGKKVTHAVVTVPAYFN---------------------------------------------------------- 184 (663)
T ss_pred HHHHHhCCcccceEEecchhcc----------------------------------------------------------
Confidence 9999999999988777666655
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+.||+++++|..+|||+++++|+||+|||++|++++. ..+.++||||+||||||+
T Consensus 185 ------------------------DAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTFDV 239 (663)
T KOG0100|consen 185 ------------------------DAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTFDV 239 (663)
T ss_pred ------------------------hHHHhhhcccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceEEE
Confidence 5555666666777788888899999999999999876 467899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++.+++| +|+|+++.||.+|||+|||.++++|+.+.++++++.|++.+.+++++|+.+||++|+.||++.+..+.|++
T Consensus 240 SlLtIdnG-VFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS 318 (663)
T KOG0100|consen 240 SLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIES 318 (663)
T ss_pred EEEEEcCc-eEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeee
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
+++|.||+-++||..||++..+++..++.+++++|+++++.+.+|+.|+|||||+|||.||++|+++|+|++++..+|||
T Consensus 319 ~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPd 398 (663)
T KOG0100|consen 319 LFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPD 398 (663)
T ss_pred ccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
+|||+|||.+|..||| .....++++.|++|.++||++.+|.|..+||||+.||++++..|+|+.|+|+.+.|.+|+|+
T Consensus 399 EAVAYGAAVQaGvlsG--ee~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGE 476 (663)
T KOG0100|consen 399 EAVAYGAAVQAGVLSG--EEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGE 476 (663)
T ss_pred HHHHhhhhhhhccccc--ccCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeecc
Confidence 9999999999999999 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
++++++|+++|.|.++||||+|+|.|+|+|+|++|.||+|+|++.|+.||+..+++|+++.++||+++|++|.+++++|.
T Consensus 477 R~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFA 556 (663)
T KOG0100|consen 477 RPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFA 556 (663)
T ss_pred ccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSG---SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~---~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~ 636 (655)
++|+..+++.++||+||+|.|.+++.+.+.. ..+++++++.+...+++..+||++|++|++++|++++++|+.+++|
T Consensus 557 eeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~P 636 (663)
T KOG0100|consen 557 EEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQP 636 (663)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCCCC
Q psy3270 637 IMTKLHQA-GGKGP 649 (655)
Q Consensus 637 i~~r~~e~-~~~~~ 649 (655)
|.++.++. ||.++
T Consensus 637 iisklY~~ag~~~~ 650 (663)
T KOG0100|consen 637 IISKLYGGAGGAPE 650 (663)
T ss_pred HHHHHhhhcCCCCC
Confidence 99998885 66544
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-100 Score=856.83 Aligned_cols=561 Identities=70% Similarity=1.070 Sum_probs=522.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|+.++.+||++|++++|||||++|+|+.++..+++|||.++ ..++.+.+.+.+.++.+.|+|++|+|++|+++++
T Consensus 51 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~ 130 (653)
T PTZ00009 51 IGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKE 130 (653)
T ss_pred EcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999988 4678888999998877899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|||||+
T Consensus 131 ~ae~~~g~~v~~~VItVPa------------------------------------------------------------- 149 (653)
T PTZ00009 131 IAEAYLGKQVKDAVVTVPA------------------------------------------------------------- 149 (653)
T ss_pred HHHHHhCCCcceeEEEeCC-------------------------------------------------------------
Confidence 9999998887777555555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+|++.||+++++||+.||+++++|++||+|||++|+.......+.+++|||+||||||+
T Consensus 150 ---------------------~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dv 208 (653)
T PTZ00009 150 ---------------------YFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDV 208 (653)
T ss_pred ---------------------CCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEE
Confidence 55667777788888888899999999999999999986543356789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH-KKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~ 318 (655)
|++++.++ .++++++.|+.++||++||..|++|+.++|..++ +.++..+++.+.+|+.+||++|+.||.+..+.+.++
T Consensus 209 sv~~~~~~-~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~ 287 (653)
T PTZ00009 209 SLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID 287 (653)
T ss_pred EEEEEeCC-eEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 99999887 9999999999999999999999999999998876 467778899999999999999999999999999999
Q ss_pred cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 319 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
+++++.++.++|||++|+++|+|++++++.+|+++|+.++++..+|+.|+||||+||+|+|+++|+++|++..+...+||
T Consensus 288 ~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~np 367 (653)
T PTZ00009 288 SLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINP 367 (653)
T ss_pred eccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999977788889999
Q ss_pred hhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEec
Q psy3270 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEG 478 (655)
Q Consensus 399 ~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g 478 (655)
++|||+|||++|+++++...+.++++.+.|++|++||++..++.+.+|||+|++||++++.+|++..|+|+.+.|.||||
T Consensus 368 deaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~eg 447 (653)
T PTZ00009 368 DEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEG 447 (653)
T ss_pred chHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEec
Confidence 99999999999999998655677889999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHh
Q psy3270 479 ERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558 (655)
Q Consensus 479 ~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~ 558 (655)
++..+.+|..||++.|.++|+.+.|.+.|+++|++|.||+|+|++.+..||+...+.+.....+|++++++++++.+.++
T Consensus 448 e~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~ 527 (653)
T PTZ00009 448 ERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKY 527 (653)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999888766789999999999999999
Q ss_pred hhhcHHHHHHHHHHhhHHHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHH
Q psy3270 559 KAEDDKQRERVAAKNKLESYAFAVKQAAEDS-G-SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 559 ~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~-~-~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~ 636 (655)
..+|+..+++.++||+||+|||++|++|.++ . .++++++++++.+.++++++|||++.+++.++|++|+++|+++++|
T Consensus 528 ~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~p 607 (653)
T PTZ00009 528 KAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNP 607 (653)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999753 3 7899999999999999999999988889999999999999999999
Q ss_pred HHHHHHhc
Q psy3270 637 IMTKLHQA 644 (655)
Q Consensus 637 i~~r~~e~ 644 (655)
+..|++..
T Consensus 608 i~~r~~~~ 615 (653)
T PTZ00009 608 IMTKMYQA 615 (653)
T ss_pred HHHHHHhh
Confidence 99998754
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-99 Score=799.84 Aligned_cols=562 Identities=72% Similarity=1.084 Sum_probs=538.4
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++|..+||.||++++|||||+.|+||.++.++++|||.+. +.++.+.+.+.++++.+.|+|+++++++|.++++
T Consensus 54 vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke 133 (620)
T KOG0101|consen 54 IGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKE 133 (620)
T ss_pred hhhhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHH
Confidence 478999999999999999999999999999999999999999999 4567899999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|+|||+|
T Consensus 134 ~Ae~~Lg~~v~~aviTVPa~------------------------------------------------------------ 153 (620)
T KOG0101|consen 134 TAEAYLGKTVKKAVVTVPAY------------------------------------------------------------ 153 (620)
T ss_pred HHHHHhcCceeeEEEEecCC------------------------------------------------------------
Confidence 99999999888886665555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++.||+++.+|+.+||++++++++||+|||++|++.+......+++|+|+||||||+
T Consensus 154 ----------------------F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdv 211 (620)
T KOG0101|consen 154 ----------------------FNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDV 211 (620)
T ss_pred ----------------------cCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceee
Confidence 5667777778888888888899999999999999988776677899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++.+.+| .+.++++.||.++||++||+.+++|+..+|+++++.++..+++++++|+.+||.+|+.||....+++.+++
T Consensus 212 s~l~i~gG-~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vds 290 (620)
T KOG0101|consen 212 SVLSLEGG-IFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDS 290 (620)
T ss_pred eeEEeccc-hhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccch
Confidence 99999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
+.+|.++...+||.+|+.++.+++.++..++..+|+++++++.+|+.|+||||+||+|.++..++++|+++.+..++|||
T Consensus 291 L~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpD 370 (620)
T KOG0101|consen 291 LYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPD 370 (620)
T ss_pred hhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
++||+|||++||.+++.....+.++.+.|+.|.++||++.++.|.++|++|+.+|++++.+|+|+.|||+.+.|.||+|+
T Consensus 371 eavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEge 450 (620)
T KOG0101|consen 371 EAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGE 450 (620)
T ss_pred HHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEecc
Confidence 99999999999999998777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
+..+++|.++|.|.|.|+||+|.|.+.|+++|.+|.||+|.|++.+++|||...++|.+..+.||.++|+++....++++
T Consensus 451 r~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~ 530 (620)
T KOG0101|consen 451 RAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYK 530 (620)
T ss_pred ccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
.+|...+.+..++|.||+|+|.++..+++....++++++.++.+.++++..||+.+..+.+++|++|.++|+..+.||+.
T Consensus 531 ~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~ 610 (620)
T KOG0101|consen 531 AEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIIS 610 (620)
T ss_pred ccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999987667899999999999999999999999888899999999999999999999
Q ss_pred HHHhcC
Q psy3270 640 KLHQAG 645 (655)
Q Consensus 640 r~~e~~ 645 (655)
++++.|
T Consensus 611 ~~~~~~ 616 (620)
T KOG0101|consen 611 KLYQGG 616 (620)
T ss_pred hhhccC
Confidence 998873
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-94 Score=812.76 Aligned_cols=549 Identities=48% Similarity=0.781 Sum_probs=503.0
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.+||++|++++|||||++++|+. ...++|||.++. .++...+.+ ++ ..|+|++|+|++|+++++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~i--~~--~~~~peei~a~iL~~lk~ 123 (653)
T PRK13411 50 VGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQI--RG--RNYTPQEISAMILQKLKQ 123 (653)
T ss_pred EcHHHHHhhhhCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEEE--CC--EEECHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999864 456899999984 455444544 44 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 124 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 140 (653)
T PRK13411 124 DAEAYLGEPVTQAVITV--------------------------------------------------------------- 140 (653)
T ss_pred HHHHHhCCCcceEEEEE---------------------------------------------------------------
Confidence 99999888777775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++||+.|||++++|++||+|||++|+.... ..+.++||||+||||||+
T Consensus 141 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dv 200 (653)
T PRK13411 141 -------------------PAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDV 200 (653)
T ss_pred -------------------CCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEE
Confidence 555666777788888888899999999999999999988654 246789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 201 si~~~~~~-~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~ 279 (653)
T PRK13411 201 SILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPF 279 (653)
T ss_pred EEEEEeCC-EEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 99999887 99999999999999999999999999999998888888889999999999999999999999999888876
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++.+.|||++|+++|+|+++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|++.|++..+..+
T Consensus 280 ~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~ 359 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRS 359 (653)
T ss_pred eccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCC
Confidence 543 3568899999999999999999999999999999999999999999999999999999999999977788889
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++. ++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+
T Consensus 360 ~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v 435 (653)
T PRK13411 360 VNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHV 435 (653)
T ss_pred CCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEE
Confidence 999999999999999999873 5789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||.+.+.++|+.+.|.++|+|+|++|.||+|+|++.+..||+...+.+.+. .+||+++++++++++
T Consensus 436 ~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~ 514 (653)
T PRK13411 436 LQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEA 514 (653)
T ss_pred EEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888764 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++.++|+.++++.++||+||+|+|.+|+.|.+...++++++++++.+.++++++||+++ +++.++|++++++|++.+.
T Consensus 515 ~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~ 593 (653)
T PRK13411 515 EKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALL 593 (653)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976448899999999999999999999984 4688999999999999999
Q ss_pred HHHHHHHhcC
Q psy3270 636 PIMTKLHQAG 645 (655)
Q Consensus 636 ~i~~r~~e~~ 645 (655)
++..++++++
T Consensus 594 ~i~~~~y~~~ 603 (653)
T PRK13411 594 AIGAEVYQQG 603 (653)
T ss_pred HHHHHHHhhc
Confidence 9999988774
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-94 Score=804.03 Aligned_cols=548 Identities=45% Similarity=0.738 Sum_probs=501.1
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.+||.+|++++|||||++++|+.++..++.|||.++. .++...+. .. ..+.|+|++|++++|+++++
T Consensus 74 vG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~--~~-~~~~~speeisa~iL~~Lk~ 150 (657)
T PTZ00186 74 VGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ--DG-NGKQYSPSQIGAFVLEKMKE 150 (657)
T ss_pred EcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEE--eC-CCeEEcHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999984 44544433 22 23789999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++++|.++.++|||||+
T Consensus 151 ~Ae~~lg~~v~~aVITVPa------------------------------------------------------------- 169 (657)
T PTZ00186 151 TAENFLGHKVSNAVVTCPA------------------------------------------------------------- 169 (657)
T ss_pred HHHHHhCCccceEEEEECC-------------------------------------------------------------
Confidence 9999998888777555555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+|++.||+++++|++.|||++++|++||+|||++|+.... .+.+++|||+||||||+
T Consensus 170 ---------------------yF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~Dv 226 (657)
T PTZ00186 170 ---------------------YFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDI 226 (657)
T ss_pred ---------------------CCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEE
Confidence 4566777778888888888889999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||+|||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||....+.+.++.
T Consensus 227 Sil~~~~g-~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~ 305 (657)
T PTZ00186 227 SVLEIAGG-VFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPF 305 (657)
T ss_pred EEEEEeCC-EEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEee
Confidence 99999888 99999999999999999999999999999999999888888999999999999999999999999888876
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+..+ .++.+.|||++|+++|+|++++++.+++++|+++++++.+|+.|+||||+||||.|+++|+++| +..+...
T Consensus 306 i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~ 384 (657)
T PTZ00186 306 ITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRG 384 (657)
T ss_pred eccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCcccc
Confidence 5432 4578999999999999999999999999999999999999999999999999999999999999 5666788
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++. ++++.+.|++|+|||+++.+|.+.+|||||++||++++..|++..|||+.+.|.|
T Consensus 385 ~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i 460 (657)
T PTZ00186 385 VNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV 460 (657)
T ss_pred CCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEE
Confidence 999999999999999999873 4678999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||+|+|.++||.|+|.++|+|+|++|.||+|+|++.+..||++..++|... .+|++++++++.++.
T Consensus 461 ~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~ 539 (657)
T PTZ00186 461 FQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDS 539 (657)
T ss_pred EEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
+++..+|+..+++.+++|++|++++.++..+.+. ..+++++++.+.+.++++++||.. .+.+.+.+++++++|++.+.
T Consensus 540 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~ 617 (657)
T PTZ00186 540 EQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQKAVM 617 (657)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999643 468899999999999999999984 34567899999999999999
Q ss_pred HHHHHHHhc
Q psy3270 636 PIMTKLHQA 644 (655)
Q Consensus 636 ~i~~r~~e~ 644 (655)
++..++++.
T Consensus 618 ~~~~~~~~~ 626 (657)
T PTZ00186 618 ECGRTEYQQ 626 (657)
T ss_pred HHHHHHHhh
Confidence 999887653
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-94 Score=809.38 Aligned_cols=548 Identities=44% Similarity=0.739 Sum_probs=501.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++++.+||++|++++|||||+++++ ++...+++||.+.. ++|...+.+...+ +.|+|++|+|++|++|++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~ 125 (668)
T PRK13410 50 VGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLAD 125 (668)
T ss_pred ECHHHHHhhHhCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHH
Confidence 699999999999999999999999999976 56667899999984 5666666654443 789999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++++|.++.++||||
T Consensus 126 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 142 (668)
T PRK13410 126 DASRYLGEPVTGAVITV--------------------------------------------------------------- 142 (668)
T ss_pred HHHHHhCCCcceEEEEE---------------------------------------------------------------
Confidence 99999988877775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++||+.||++++++|+||+|||++|+.... .+.++||||+||||||+
T Consensus 143 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dv 201 (668)
T PRK13410 143 -------------------PAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDV 201 (668)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEE
Confidence 555566777778888888899999999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++|+++.|+.++||.+||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 202 sv~~~~~g-~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~ 280 (668)
T PRK13410 202 SLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPF 280 (668)
T ss_pred EEEEEcCC-eEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 99999888 99999999999999999999999999999999998888888999999999999999999999988888887
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+..+ .++...|||++|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++| +..+...
T Consensus 281 ~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~ 359 (668)
T PRK13410 281 ITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQN 359 (668)
T ss_pred eecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccC
Confidence 6532 4678899999999999999999999999999999999999999999999999999999999999 5678888
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++ .++++.+.|++|++||+++.+|.+.++||+|++||++++.+|++..|+|+.+.|.+
T Consensus 360 ~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v 435 (668)
T PRK13410 360 VNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV 435 (668)
T ss_pred CCCchHHHHhHHHHHHhhcc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEE
Confidence 99999999999999999988 35789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..||++..++|... .+||+++++++++++
T Consensus 436 ~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~ 514 (668)
T PRK13410 436 WQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEA 514 (668)
T ss_pred EeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888765 679999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhc---C-CCCCHHHHHHHHHHHHHHHHHhccCC-ccCHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDS---G-SKLSDADKTSVSQACSATLTWLEGNS-LAEKEEFEDRLKTL 630 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~---~-~~~~~~e~~~l~~~l~e~~~WL~~~~-~a~~~~~~~kl~~L 630 (655)
.+|..+|+..+++.++||+||+|+|.+|++|.+. . .++++++++++.+.++++++||+++. +...+.|+++++.|
T Consensus 515 ~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l 594 (668)
T PRK13410 515 EAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEAL 594 (668)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999752 2 77899999999999999999999874 46677899999999
Q ss_pred HHHHHHHHHHHHh
Q psy3270 631 QQTCTPIMTKLHQ 643 (655)
Q Consensus 631 ~~~~~~i~~r~~e 643 (655)
+.+..++..|+.+
T Consensus 595 ~~~~~~~~~~~~~ 607 (668)
T PRK13410 595 YGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999988
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-94 Score=809.77 Aligned_cols=548 Identities=50% Similarity=0.823 Sum_probs=504.2
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||++++|+.++..+++|||.++. .+|...+.+ ++ +.|+|++|+|++|+++++
T Consensus 89 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~speel~a~iL~~lk~ 164 (663)
T PTZ00400 89 VGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA--QG--KKYSPSQIGAFVLEKMKE 164 (663)
T ss_pred ECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE--CC--EEECHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999984 455555544 44 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 165 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 181 (663)
T PTZ00400 165 TAESYLGRKVKQAVITV--------------------------------------------------------------- 181 (663)
T ss_pred HHHHHhCCCCceEEEEE---------------------------------------------------------------
Confidence 99999988877775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++||+.||+++++|++||+|||++|+.... .+.+++|||+||||||+
T Consensus 182 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~Dv 240 (663)
T PTZ00400 182 -------------------PAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDI 240 (663)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC--CCcEEEEEeCCCCeEEE
Confidence 555666777778888888899999999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 241 Sv~~~~~g-~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~ 319 (663)
T PTZ00400 241 SILEILGG-VFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPF 319 (663)
T ss_pred EEEEecCC-eeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEe
Confidence 99999887 99999999999999999999999999999999888888888999999999999999999999988888876
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+..+ .++.++|||++|+++|+|++++++.++.++|+++++.+.+|+.|+||||+||+|+|+++|+++| +.++...
T Consensus 320 ~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~ 398 (663)
T PTZ00400 320 ITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKG 398 (663)
T ss_pred eccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccC
Confidence 5433 4788999999999999999999999999999999999999999999999999999999999999 5677889
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||+++||+|||++|+++++. .+++.+.|++|++||++..+|.+.++||+|+++|++++..|++..|+|+.+.|.|
T Consensus 399 ~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i 474 (663)
T PTZ00400 399 VNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKV 474 (663)
T ss_pred CCCccceeeccHHHHHhhcCC----ccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEE
Confidence 999999999999999999872 5789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||++.|.++|+.+.|.+.|+|+|.+|.||+|+|++.+..+|+...+++... .+||+++++++.+++
T Consensus 475 ~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~ 553 (663)
T PTZ00400 475 FQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEA 553 (663)
T ss_pred EEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888765 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++.++|+..+++.++||+||+|+|.+|+.|.+....+++++++++.+.++++++||+++ +.++|++++++|++.+.
T Consensus 554 ~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~ 630 (663)
T PTZ00400 554 EEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASW 630 (663)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975337899999999999999999999986 57899999999999999
Q ss_pred HHHHHHHhcCC
Q psy3270 636 PIMTKLHQAGG 646 (655)
Q Consensus 636 ~i~~r~~e~~~ 646 (655)
++..++++.++
T Consensus 631 ~l~~k~y~~~~ 641 (663)
T PTZ00400 631 KISQQAYKQGN 641 (663)
T ss_pred HHHHHHHhhhc
Confidence 99998877643
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-93 Score=798.84 Aligned_cols=546 Identities=48% Similarity=0.778 Sum_probs=499.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||++++| ++...+.|||.++. ++|...+.+...+ ..|+|+++++++|+++++
T Consensus 87 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~ 162 (673)
T PLN03184 87 VGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVD 162 (673)
T ss_pred ECHHHHHhhhhCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHH
Confidence 599999999999999999999999999976 56677889999984 4666666665555 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 163 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 179 (673)
T PLN03184 163 DASKFLNDKVTKAVITV--------------------------------------------------------------- 179 (673)
T ss_pred HHHHHhCCCCCeEEEEE---------------------------------------------------------------
Confidence 99999887777775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++|++.||+++++|++||+|||++|+.... .+..+||||+||||||+
T Consensus 180 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dv 238 (673)
T PLN03184 180 -------------------PAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDV 238 (673)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEE
Confidence 555566777788888888899999999999999999998754 56789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.+++
T Consensus 239 Si~~~~~~-~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~ 317 (673)
T PLN03184 239 SVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPF 317 (673)
T ss_pred EEEEecCC-EEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEe
Confidence 99999887 99999999999999999999999999999999999888889999999999999999999999998888876
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++...|||++|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++| +..+...
T Consensus 318 ~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~ 396 (673)
T PLN03184 318 ITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVT 396 (673)
T ss_pred eeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccc
Confidence 532 35788899999999999999999999999999999999999999999999999999999999999 5677888
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+
T Consensus 397 ~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i 472 (673)
T PLN03184 397 VNPDEVVALGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINV 472 (673)
T ss_pred cCcchHHHHHHHHHHHHhcc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEE
Confidence 99999999999999999987 35678999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++....+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..|++...+++... .+||+++++++++++
T Consensus 473 ~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~ 551 (673)
T PLN03184 473 LQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEA 551 (673)
T ss_pred EeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888754 579999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++..+|+..+++.++||+||+|+|.+|++|.+..+++++++++++.+.++++++||+++ +.+.+++++++|.+.+.
T Consensus 552 ~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~ 628 (673)
T PLN03184 552 EKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVM 628 (673)
T ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974337899999999999999999999986 56789999999999999
Q ss_pred HHHHHHHhc
Q psy3270 636 PIMTKLHQA 644 (655)
Q Consensus 636 ~i~~r~~e~ 644 (655)
++..+++++
T Consensus 629 ~l~~~~~~~ 637 (673)
T PLN03184 629 QIGQSLYNQ 637 (673)
T ss_pred HHHHHHHhc
Confidence 999988766
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-91 Score=789.00 Aligned_cols=543 Identities=51% Similarity=0.837 Sum_probs=500.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++++.++|++|++++|||||++ ++.++..+++|||.++. .+|...+. .+| +.|+|++|++++|+++++
T Consensus 50 vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~--~~~~peel~a~iL~~lk~ 123 (627)
T PRK00290 50 VGQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVE--IDG--KKYTPQEISAMILQKLKK 123 (627)
T ss_pred EcHHHHHhhhhCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEEE--ECC--EEEcHHHHHHHHHHHHHH
Confidence 699999999999999999999999999 67788999999999995 34555444 455 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++++|.++.++|||
T Consensus 124 ~ae~~~g~~v~~~VIt---------------------------------------------------------------- 139 (627)
T PRK00290 124 DAEDYLGEKVTEAVIT---------------------------------------------------------------- 139 (627)
T ss_pred HHHHHhCCCCceEEEE----------------------------------------------------------------
Confidence 9999988777777555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
||++|++.||+++++||+.||+++++|++||+|||++|+.... .+.++||||+||||||+
T Consensus 140 ------------------VPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dv 199 (627)
T PRK00290 140 ------------------VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDV 199 (627)
T ss_pred ------------------ECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEE
Confidence 5555667777788888888899999999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||.+||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 200 sv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~ 278 (627)
T PRK00290 200 SILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPF 278 (627)
T ss_pred EEEEEeCC-eEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Confidence 99999887 99999999999999999999999999999999999888889999999999999999999999999988887
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++.+.|||++|+++|+|+++++..+|+++|+.+++++.+|+.|+||||+||+|+|++.|++.| +..+..+
T Consensus 279 ~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~ 357 (627)
T PRK00290 279 ITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKG 357 (627)
T ss_pred cccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcC
Confidence 653 25788999999999999999999999999999999999999999999999999999999999999 6778889
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+.+++ ..+++.+.|++|++||++..++.+.+|||+|+++|++++.+|++..|+|+.+.|.+
T Consensus 358 ~npdeava~GAa~~aa~l~~----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v 433 (627)
T PRK00290 358 VNPDEVVAIGAAIQGGVLAG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHV 433 (627)
T ss_pred cCChHHHHHhHHHHHHHhcC----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEE
Confidence 99999999999999999987 35789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||++.|.++|+.++|.++|+++|.+|.||+|+|++.+..+|+..++++... .+|+.++++++++++
T Consensus 434 ~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~ 512 (627)
T PRK00290 434 LQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDA 512 (627)
T ss_pred EEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988765 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++.++|+..+++.++||+||+|+|.+|+.|.+...++++++++++.+.++++++||+++ +.++|++++++|+++++
T Consensus 513 ~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~ 589 (627)
T PRK00290 513 EANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQ 589 (627)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974337889999999999999999999986 67899999999999999
Q ss_pred HHHHHHHh
Q psy3270 636 PIMTKLHQ 643 (655)
Q Consensus 636 ~i~~r~~e 643 (655)
++..|+++
T Consensus 590 ~~~~~~~~ 597 (627)
T PRK00290 590 KLGEAMYQ 597 (627)
T ss_pred HHHHHHHh
Confidence 99999876
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-91 Score=782.83 Aligned_cols=555 Identities=50% Similarity=0.790 Sum_probs=502.7
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||+++++ ++...+.|||.++. .+|...+.+...+ ..|+|+++++++|+++++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~ 125 (621)
T CHL00094 50 VGQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVE 125 (621)
T ss_pred ECHHHHHhHHhCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHH
Confidence 589999999999999999999999999976 56677889999984 4566666665555 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 126 ~ae~~lg~~v~~~VItV--------------------------------------------------------------- 142 (621)
T CHL00094 126 DASKYLGETVTQAVITV--------------------------------------------------------------- 142 (621)
T ss_pred HHHHHhCCCCCeEEEEE---------------------------------------------------------------
Confidence 99999887777775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++|||+||||||+
T Consensus 143 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~Dv 201 (621)
T CHL00094 143 -------------------PAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDV 201 (621)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEE
Confidence 555566777778888888899999999999999999998754 56789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 202 Sv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~ 280 (621)
T CHL00094 202 SILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPF 280 (621)
T ss_pred EEEEEcCC-EEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 99999887 99999999999999999999999999999999999888888999999999999999999999888888876
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++...|||++|+++++++++++..+|+++|+.+++.+.+|+.|+||||+||+|.|++.|+++| +..+...
T Consensus 281 ~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~ 359 (621)
T CHL00094 281 ITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQS 359 (621)
T ss_pred cccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcC
Confidence 543 24688899999999999999999999999999999999999999999999999999999999999 5678888
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++ ..+++.+.|++|++||++..++.+.+|||+|+++|++++..|++..++|+.+.|.+
T Consensus 360 ~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i 435 (621)
T CHL00094 360 VNPDEVVAIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV 435 (621)
T ss_pred CCchhHHHhhhHHHHHHhcC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEE
Confidence 99999999999999999987 35778999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||+|.|.++|+.+.|.++|+++|++|.||+|+|++.+..||+...+.+.+. .+|++++++++++++
T Consensus 436 ~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~ 514 (621)
T CHL00094 436 LQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEA 514 (621)
T ss_pred EeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888754 579999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++..+|+..+++.++||+||+|+|.+|+++.....++++++++++.+.++++++||+++ ..++|++++++|++.++
T Consensus 515 ~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~ 591 (621)
T CHL00094 515 EKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALM 591 (621)
T ss_pred HHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975337889999999999999999999986 45899999999999999
Q ss_pred HHHHHHHh-c-CCC-CCCCCC
Q psy3270 636 PIMTKLHQ-A-GGK-GPDVEE 653 (655)
Q Consensus 636 ~i~~r~~e-~-~~~-~~~~~~ 653 (655)
++..++++ + +++ |..+|+
T Consensus 592 ~~~~kl~~~~~~~~~~~~~~~ 612 (621)
T CHL00094 592 EIGKEVYSSTSTTDPASNDDD 612 (621)
T ss_pred HHHHHHHhhcccCCCCCCcCc
Confidence 99998777 3 222 555554
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-90 Score=780.52 Aligned_cols=543 Identities=52% Similarity=0.848 Sum_probs=498.0
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|..|++++.+||++|++++|||||++++ .++...++|||.+..++|...+.+ +| +.|+|++++|++|+++++.
T Consensus 48 vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~~~~~~~~~~v~~~~~~~~~~v--~~--~~~~peel~a~~L~~l~~~ 121 (595)
T TIGR02350 48 VGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGGDVRVKV--DG--KEYTPQEISAMILQKLKKD 121 (595)
T ss_pred ECHHHHHhhhhCchhhhHHHHHHhCCCch--HHHHHhhcCCeeEEcCCCceEEEE--CC--EEecHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999994 477788999999666666666655 44 6899999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|+.++|.++.++||||
T Consensus 122 a~~~~~~~v~~~VItV---------------------------------------------------------------- 137 (595)
T TIGR02350 122 AEAYLGEKVTEAVITV---------------------------------------------------------------- 137 (595)
T ss_pred HHHHhCCCCCeEEEEE----------------------------------------------------------------
Confidence 9999988777775555
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs 240 (655)
|++|++.||+++++||+.||++++++++||+|||++|+.... ..+.+++||||||||||+|
T Consensus 138 ------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvs 198 (595)
T TIGR02350 138 ------------------PAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVS 198 (595)
T ss_pred ------------------CCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEE
Confidence 555667777788888888899999999999999999987653 3578999999999999999
Q ss_pred EEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Q psy3270 241 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDAL 320 (655)
Q Consensus 241 v~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~ 320 (655)
++++.++ .++++++.|+..+||.+||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+
T Consensus 199 v~~~~~~-~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~ 277 (595)
T TIGR02350 199 ILEIGDG-VFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFI 277 (595)
T ss_pred EEEecCC-eEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeec
Confidence 9999887 999999999999999999999999999999999988888889999999999999999999999998888765
Q ss_pred cC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCC
Q psy3270 321 HE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396 (655)
Q Consensus 321 ~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~ 396 (655)
.. +.++.+.|||++|+++++|+++++..+++++|+.+++++.+|+.|+||||+||+|+|++.|++.|+ ..+..++
T Consensus 278 ~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~ 356 (595)
T TIGR02350 278 TADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSV 356 (595)
T ss_pred ccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCc
Confidence 43 356889999999999999999999999999999999999999999999999999999999999995 6788899
Q ss_pred CchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEE
Q psy3270 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVF 476 (655)
Q Consensus 397 ~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~ 476 (655)
||++|||+|||++|+.+++. ++++.+.|++|++||++..++.+.+|||+|+++|++++.+|++..|+|+.+.|.+|
T Consensus 357 ~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~ 432 (595)
T TIGR02350 357 NPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVL 432 (595)
T ss_pred CcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEE
Confidence 99999999999999999873 57889999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHH
Q psy3270 477 EGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAE 556 (655)
Q Consensus 477 ~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~ 556 (655)
||++..+.+|..||++.|+++|+.+.|.++|+++|++|.||+|+|++.+..+|+...+.+... .+||+++++++.+++.
T Consensus 433 ~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~ 511 (595)
T TIGR02350 433 QGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAE 511 (595)
T ss_pred eecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888765 5699999999999999
Q ss_pred HhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHH
Q psy3270 557 KYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 557 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~ 636 (655)
++..+|+..+++.++||+||+|||.+|+.|.+...++++++++++.+.++++++||+++ +..+|++++++|++.+++
T Consensus 512 ~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~ 588 (595)
T TIGR02350 512 ANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQK 588 (595)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975447899999999999999999999986 667999999999999999
Q ss_pred HHHHHH
Q psy3270 637 IMTKLH 642 (655)
Q Consensus 637 i~~r~~ 642 (655)
+..+++
T Consensus 589 ~~~~~~ 594 (595)
T TIGR02350 589 LAEAMY 594 (595)
T ss_pred HHHHHh
Confidence 998765
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-89 Score=763.99 Aligned_cols=539 Identities=40% Similarity=0.643 Sum_probs=488.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||+++.|+. . .+.|||.++. .+|...+.+. + ..++|++++|++|+++++
T Consensus 47 vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~ 119 (599)
T TIGR01991 47 VGKEALAAAAEDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQ 119 (599)
T ss_pred ecHHHHHhhhhChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHH
Confidence 69999999999999999999999999998853 3 6789999884 4566666553 3 379999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|||
T Consensus 120 ~a~~~lg~~v~~~VIt---------------------------------------------------------------- 135 (599)
T TIGR01991 120 RAEESLGGDLVGAVIT---------------------------------------------------------------- 135 (599)
T ss_pred HHHHHhCCCcceEEEE----------------------------------------------------------------
Confidence 9999988877777555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
||++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++|||+||||||+
T Consensus 136 ------------------VPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~Dv 195 (599)
T TIGR01991 136 ------------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDV 195 (599)
T ss_pred ------------------ECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEE
Confidence 5555667777888888888999999999999999999998764 57889999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 196 Si~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~ 270 (599)
T TIGR01991 196 SILKLTKG-VFEVLATGGDSALGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL 270 (599)
T ss_pred EEEEEcCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE
Confidence 99999887 899999999999999999999999998654 4444567889999999999999999999888888864
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
++.++.++|||++|+++++|+++++..+|.++|+.+++.+.+|+.|+||||+||+|+|+++|++.| +..+..++||+
T Consensus 271 --~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npd 347 (599)
T TIGR01991 271 --DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPD 347 (599)
T ss_pred --CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCc
Confidence 678899999999999999999999999999999999999999999999999999999999999999 45677789999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
+|||+|||++|+.+++ .+..+++.+.|++|++||+++.+|.+.++||||++||++++..|++..|+|+.+.|.||||+
T Consensus 348 eaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe 425 (599)
T TIGR01991 348 QVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGE 425 (599)
T ss_pred HHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeec
Confidence 9999999999999997 34456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
+..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..||++..+.|.+. .+|++++++++.+++.++.
T Consensus 426 ~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~ 504 (599)
T TIGR01991 426 RELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHA 504 (599)
T ss_pred ccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999998888765 5699999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
.+|...++..+++|++|+|+|.+++.+.+....+++++++++.+.++++++||+++ +...++++.++|++.++++..
T Consensus 505 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 505 EEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999965446889999999999999999999976 568999999999999999998
Q ss_pred HHHhc
Q psy3270 640 KLHQA 644 (655)
Q Consensus 640 r~~e~ 644 (655)
+.++.
T Consensus 582 ~~~~~ 586 (599)
T TIGR01991 582 RRMDR 586 (599)
T ss_pred HHHhh
Confidence 65554
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-91 Score=709.36 Aligned_cols=549 Identities=49% Similarity=0.804 Sum_probs=509.6
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++|+..||.|||+.-||||||.|+||++|++++..||+++. .||+..+.. .| ..|+|.++.+++|.++++
T Consensus 75 vg~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~ 150 (640)
T KOG0102|consen 75 VGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKE 150 (640)
T ss_pred ecchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999994 577766655 55 899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++|++.++.++|++||+|
T Consensus 151 tae~yl~~~v~~avvtvpAy------------------------------------------------------------ 170 (640)
T KOG0102|consen 151 TAEAYLGKKVKNAVITVPAY------------------------------------------------------------ 170 (640)
T ss_pred HHHHHcCchhhheeeccHHH------------------------------------------------------------
Confidence 99999998888875555555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++.||+++++|.++||++++++++||+|||++|+++.. .+..++|||+||||||+
T Consensus 171 ----------------------fndsqRqaTkdag~iagl~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdi 226 (640)
T KOG0102|consen 171 ----------------------FNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDI 226 (640)
T ss_pred ----------------------HhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeee
Confidence 566777788888888888899999999999999999977 47889999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
+++.+.+| +|++.++.||.++||++||..++.|+...|....+.++..+.++++|++.++|++|+.||...+..+.++.
T Consensus 227 silei~~g-vfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~ 305 (640)
T KOG0102|consen 227 SILEIEDG-VFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPF 305 (640)
T ss_pred eeehhccc-eeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccce
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
...+ ..+.+++||.+|++++.++++|.+.++.++|++|++...+|+.|+||||++|+|.+++.+++.| ++.+...
T Consensus 306 iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~ 384 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKG 384 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCC
Confidence 6554 5688999999999999999999999999999999999999999999999999999999999999 6788999
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+|||++||.|||+++..|++ .++++.+.|++|.++||++.+|.|..+||+|+.||++++..|.|..|+|+.+.|.+
T Consensus 385 vnPdeava~GAaiqggvl~g----eVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv 460 (640)
T KOG0102|consen 385 VNPDEAVAGGAAIQGGVLSG----EVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKV 460 (640)
T ss_pred cCCcchhccchhhccchhhc----cccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEe
Confidence 99999999999999999998 47899999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++....+|..+|+|.+.|+||+|+|.|.|+|+|.+|.||+++|+|.++.|||..++++... ++||++|++.+..+.
T Consensus 461 ~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~ea 539 (640)
T KOG0102|consen 461 FQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEA 539 (640)
T ss_pred eechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 459999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
+.+...|+.++++.+.+|..|+++|.....+....+.++..+..++...+....+.+-.-...+.++...+...|++..-
T Consensus 540 er~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~l 619 (640)
T KOG0102|consen 540 ERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASL 619 (640)
T ss_pred HHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999887666777777778999999998888875322344888999999999999
Q ss_pred HHHHHHHhc
Q psy3270 636 PIMTKLHQA 644 (655)
Q Consensus 636 ~i~~r~~e~ 644 (655)
|+...++..
T Consensus 620 kl~es~~k~ 628 (640)
T KOG0102|consen 620 KLFESAYKN 628 (640)
T ss_pred HHHHHHHhh
Confidence 999887765
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-88 Score=754.80 Aligned_cols=536 Identities=39% Similarity=0.644 Sum_probs=483.6
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||++++| ++...+.|||.+.. .+|.+.+.+. + ..|+|+++++++|+++++
T Consensus 66 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~ 139 (616)
T PRK05183 66 VGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQ 139 (616)
T ss_pred EcHHHHHhhHhCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHH
Confidence 699999999999999999999999999987 45566789999884 4676666653 2 379999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|
T Consensus 140 ~ae~~lg~~v~~~V------------------------------------------------------------------ 153 (616)
T PRK05183 140 RAEETLGGELDGAV------------------------------------------------------------------ 153 (616)
T ss_pred HHHHHhCCCcceEE------------------------------------------------------------------
Confidence 99999887777764
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
||||++|++.||+++++|++.||+++++|++||+|||++|+.... .+..++|||+||||||+
T Consensus 154 ----------------ITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~Dv 215 (616)
T PRK05183 154 ----------------ITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDI 215 (616)
T ss_pred ----------------EEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEE
Confidence 455555667777888888888999999999999999999998654 57889999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||..|++|+.+++.. +...+++.+.+|+.+||++|+.||.+..+.+.+..
T Consensus 216 Sv~~~~~~-~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~ 290 (616)
T PRK05183 216 SILRLSKG-VFEVLATGGDSALGGDDFDHLLADWILEQAGL----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL 290 (616)
T ss_pred EEEEeeCC-EEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 99999887 89999999999999999999999999887643 33357889999999999999999999988888753
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
+ ...|||++|+++++|+++++..+++++|+++++.+.+|+.|+||||+||+|+|++.|+++|+ ..+..++||+
T Consensus 291 ~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npd 363 (616)
T PRK05183 291 W------QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPD 363 (616)
T ss_pred C------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCch
Confidence 2 22599999999999999999999999999999999999999999999999999999999994 5666789999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
+|||+|||++|+.+++ .+...++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++..|+|+.+.|.+|||+
T Consensus 364 eaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe 441 (616)
T PRK05183 364 KVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGE 441 (616)
T ss_pred HHHHHHHHHHHHHhcc--ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEeccc
Confidence 9999999999999998 33456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
+..+.+|..||++.|.++|+.|.|.++|+|+|++|.||+|+|++.+..||++.++.+.+. .+|++++++++.+++.++.
T Consensus 442 ~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~ 520 (616)
T PRK05183 442 RELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHA 520 (616)
T ss_pred ccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999988765 4699999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
.+|+..+++.+++|++|+|+|.+++.+.+....+++++++++.+.++++++||..+ +.+.|++++++|++.++++..
T Consensus 521 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~ 597 (616)
T PRK05183 521 EEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAA 597 (616)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999975446789999999999999999999865 778999999999999999998
Q ss_pred HHHhc
Q psy3270 640 KLHQA 644 (655)
Q Consensus 640 r~~e~ 644 (655)
+.++.
T Consensus 598 ~~~~~ 602 (616)
T PRK05183 598 RRMDR 602 (616)
T ss_pred HHHhc
Confidence 66554
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-85 Score=744.42 Aligned_cols=552 Identities=47% Similarity=0.810 Sum_probs=502.5
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|..++.++|+++++++|||||+.++++.++...+.+||.++. ++|.+.+.+.+.|+.+.|+|+++++++|+++++
T Consensus 46 ~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 125 (602)
T PF00012_consen 46 VGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKE 125 (602)
T ss_dssp ETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHH
T ss_pred CCcchhhhcccccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcc
Confidence 5999999999999999999999999999999999999999999985 488999999998887899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++
T Consensus 126 ~a~~~~~~~~~~~------------------------------------------------------------------- 138 (602)
T PF00012_consen 126 MAEKYLGEKVTDV------------------------------------------------------------------- 138 (602)
T ss_dssp HHHHHHTSBEEEE-------------------------------------------------------------------
T ss_pred cchhhcccccccc-------------------------------------------------------------------
Confidence 9999988776666
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|||||++|+..||+++++||+.||+++++||+||+|||++|+..... .+..+||||+||||+|+
T Consensus 139 ---------------vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dv 202 (602)
T PF00012_consen 139 ---------------VITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDV 202 (602)
T ss_dssp ---------------EEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEE
T ss_pred ---------------eeeechhhhhhhhhcccccccccccccceeecccccccccccccccc-cccceeccccccceEee
Confidence 55556666777888888888899999999999999999999877653 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC--CCceEEEE
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS--STEASLEI 317 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--~~~~~i~i 317 (655)
|++++.++ .++++++.++..+||.+||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||. +....+.+
T Consensus 203 s~~~~~~~-~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~ 281 (602)
T PF00012_consen 203 SVVEFSNG-QFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISI 281 (602)
T ss_dssp EEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEE
T ss_pred eehhcccc-cccccccccccccccceecceeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999988 9999999999999999999999999999999999989888999999999999999999999 56677777
Q ss_pred ccccC-CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCC
Q psy3270 318 DALHE-GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396 (655)
Q Consensus 318 ~~~~~-~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~ 396 (655)
+++.+ |.++.+.|||++|+++++|+++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|++.|+ ..+..++
T Consensus 282 ~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~ 360 (602)
T PF00012_consen 282 ESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSV 360 (602)
T ss_dssp EEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS
T ss_pred ccccccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-ccccccc
Confidence 77776 788999999999999999999999999999999999999999999999999999999999999995 7888899
Q ss_pred CchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEE
Q psy3270 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVF 476 (655)
Q Consensus 397 ~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~ 476 (655)
||++|||+|||++|+.+++ .+..+++.+.|++|++||++..++.+.+++++|+++|+..+..|.+..++|+.+.|.+|
T Consensus 361 ~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~ 438 (602)
T PF00012_consen 361 NPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIY 438 (602)
T ss_dssp -TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEE
T ss_pred ccccccccccccchhhhcc--ccccccccccccccccccccccccccccccccccccccccccccchhccccccccceee
Confidence 9999999999999999998 46678899999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHH
Q psy3270 477 EGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAE 556 (655)
Q Consensus 477 ~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~ 556 (655)
+|+.....++..||++.|.++++.+.|.++|+++|++|.+|+|+|++.+..++....+.+..... +++++++++.++++
T Consensus 439 ~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~ 517 (602)
T PF00012_consen 439 EGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLE 517 (602)
T ss_dssp ESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccc
Confidence 99998888999999999999999999999999999999999999999999999888888887755 99999999999999
Q ss_pred HhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccC-CccCHHHHHHHHHHHHHHHH
Q psy3270 557 KYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 557 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~-~~a~~~~~~~kl~~L~~~~~ 635 (655)
++..+|+.+++..+++|+||+++|++|+.+++...+++++++ .+.+++..+||+++ .+++.++|++|+++|++..+
T Consensus 518 ~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~ 594 (602)
T PF00012_consen 518 EMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIE 594 (602)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876556666666 88899999999997 46789999999999999999
Q ss_pred HHHHHHHh
Q psy3270 636 PIMTKLHQ 643 (655)
Q Consensus 636 ~i~~r~~e 643 (655)
||..|+++
T Consensus 595 ~i~~r~~~ 602 (602)
T PF00012_consen 595 PIKKRYMQ 602 (602)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99999875
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-82 Score=701.70 Aligned_cols=500 Identities=34% Similarity=0.533 Sum_probs=431.2
Q ss_pred chhhhhhhcCCCCCC----hhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHHHHHHhCCCCce
Q psy3270 16 TVFDAKRLIGRKFED----QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSE 91 (655)
Q Consensus 16 ~~~~~krliG~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~ 91 (655)
|++++|||||++++| |.++...++ .+. .+...+.+...+ +.|+|++++|++|+++++.|+.++|.++.+
T Consensus 71 ti~~~KrliG~~~~~~~~~~~~~~~~k~----~~~-~~~~~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~ 143 (595)
T PRK01433 71 GLRSIKRLFGKTLKEILNTPALFSLVKD----YLD-VNSSELKLNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITK 143 (595)
T ss_pred hHHHHHHHhCCCchhhccchhhHhhhhh----eee-cCCCeeEEEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence 899999999999976 322222221 111 122344455555 689999999999999999999999887777
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCc
Q psy3270 92 AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKV 171 (655)
Q Consensus 92 ~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~ 171 (655)
+||||
T Consensus 144 aVITV--------------------------------------------------------------------------- 148 (595)
T PRK01433 144 AVITV--------------------------------------------------------------------------- 148 (595)
T ss_pred EEEEE---------------------------------------------------------------------------
Confidence 75554
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
|++|++.||+++++|++.||++++++++||+|||++|+.... ....+||||+||||||+|++++.++ .++
T Consensus 149 -------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~~-~~~ 218 (595)
T PRK01433 149 -------PAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILNIQEG-IFQ 218 (595)
T ss_pred -------CCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEEEeCC-eEE
Confidence 555667777788888888899999999999999999998754 4678999999999999999999888 999
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeec
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKIT 331 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~it 331 (655)
|+++.|+.++||++||..|++|+.++|... .+.. .+..||++|+.||.+..... ..++||
T Consensus 219 V~at~gd~~lGG~d~D~~l~~~~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~it 278 (595)
T PRK01433 219 VIATNGDNMLGGNDIDVVITQYLCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN----------DNISIN 278 (595)
T ss_pred EEEEcCCcccChHHHHHHHHHHHHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEc
Confidence 999999999999999999999999877422 1222 23359999999998764321 167899
Q ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 332 RARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 332 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
|++|+++|+|+++++..+++++|++++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++|+
T Consensus 279 r~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~ 355 (595)
T PRK01433 279 KQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAE 355 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHH
Confidence 999999999999999999999999998 568999999999999999999999999 56777889999999999999999
Q ss_pred HHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceee
Q psy3270 412 ILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGT 491 (655)
Q Consensus 412 ~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~ 491 (655)
.+++. ..++.+.|++|+|+|+++.+|.+.+|||||++||++++..|+|..|+|+.+.|.+|||++..+.+|..||+
T Consensus 356 ~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~ 431 (595)
T PRK01433 356 NLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLAR 431 (595)
T ss_pred HhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEE
Confidence 99873 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy3270 492 FNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAA 571 (655)
Q Consensus 492 ~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~a 571 (655)
|.|.++|+.|.|.++|+|+|++|.||+|+|++.+..||++..+.|... .+||++|++++.++.+++..+|...++..++
T Consensus 432 ~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~ 510 (595)
T PRK01433 432 FELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEA 510 (595)
T ss_pred EEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765 4599999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHH
Q psy3270 572 KNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638 (655)
Q Consensus 572 kN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~ 638 (655)
+|++|++++.+++.+.+....+++++++.+.+.+++.++||..+ +...+++++++|++.+.+++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~ 574 (595)
T PRK01433 511 VIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKKSM 574 (595)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975446688999999999999999999865 44556666666655555533
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-83 Score=671.31 Aligned_cols=557 Identities=36% Similarity=0.572 Sum_probs=494.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|+++..+|++||+.++|||+||+|+||.+|.+.+++||+++ ..||.+++.+.|-|+.+.|+|++|+||+|.+++.
T Consensus 48 ~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~ 127 (727)
T KOG0103|consen 48 IGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKA 127 (727)
T ss_pred eeeccccceeecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999 5799999999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+..+..++.+|||+||+||++.||+++++|+++|||+++++++|-+|+|+.||+...-
T Consensus 128 ~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtD-------------------- 187 (727)
T KOG0103|consen 128 TAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTD-------------------- 187 (727)
T ss_pred HHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhccccccc--------------------
Confidence 999999999999999999999999998888888877777777666666666666553210
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+.....++.+++++|+|+.++.+
T Consensus 188 ---------------------------------------------------------LP~~~ekpr~v~fvD~GHS~~q~ 210 (727)
T KOG0103|consen 188 ---------------------------------------------------------LPENEEKPRNVVFVDIGHSSYQV 210 (727)
T ss_pred ---------------------------------------------------------CCCcccCcceEEEEeccccccee
Confidence 00001246789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++.+..| .++++++.+|..+||++||+.|.+|++++|+.+|++++..++++..||+.+||++|+.||++....++|++
T Consensus 211 si~aF~kG-~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEc 289 (727)
T KOG0103|consen 211 SIAAFTKG-KLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIEC 289 (727)
T ss_pred eeeeeccC-cceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
++++.|.+..|+|++|++++.|+++|+..++.++|+++++..++|+.|.+|||+||+|.|.+.|.++| ++.+.+++|.+
T Consensus 290 fM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~d 368 (727)
T KOG0103|consen 290 FMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQD 368 (727)
T ss_pred eeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCcccc-----CcEEEEEEecCCccCcceeEEEEeecCCCceeEEE
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETA-----GGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQ 474 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~-----~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~ 474 (655)
+|||+|||+++|++|+ .++++++.+.|+.||++.+... ++....+||+|.++|.++..+|.... .+++.
T Consensus 369 EavarG~ALqcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~le 442 (727)
T KOG0103|consen 369 EAVARGAALQCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLE 442 (727)
T ss_pred HHHHHhHHHHHHhcCc--cccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEE
Confidence 9999999999999999 8899999999999999977632 25557899999999999998887643 48888
Q ss_pred EEecC-cccccCCcceeeEEecCCCCCCCC-CCeEEEEEEeCCCeeEEEEEEec------c-------------------
Q psy3270 475 VFEGE-RAMTKDNNLLGTFNLTGIPPAPRG-VPKIEVTFDLDANGILNVSAKDS------S------------------- 527 (655)
Q Consensus 475 i~~g~-~~~~~~~~~lg~~~i~~~~~~~~g-~~~i~v~~~~d~~g~l~v~~~~~------~------------------- 527 (655)
++++. ...+.....|+++++.++.+...| ..++++...++.+|+++|...-. .
T Consensus 443 a~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~ 522 (727)
T KOG0103|consen 443 AKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERI 522 (727)
T ss_pred EEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhh
Confidence 87765 445556678999999998876663 46799999999999999864310 0
Q ss_pred ---CCC----ceeeeeecC-CCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC-CCCCHHHH
Q psy3270 528 ---TGK----AERITIQND-KGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADK 598 (655)
Q Consensus 528 ---~~~----~~~~~i~~~-~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~-~~~~~~e~ 598 (655)
.++ ...+.+... .++++..+++.+.+++.+|..+|+...++.+++|.||+|||+||++|.+.+ +|++++++
T Consensus 523 ~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~ 602 (727)
T KOG0103|consen 523 APAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAER 602 (727)
T ss_pred ccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHH
Confidence 011 111223222 357999999999999999999999999999999999999999999999877 88999999
Q ss_pred HHHHHHHHHHHHHhccC-CccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 599 TSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 599 ~~l~~~l~e~~~WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
++|...|+++++|||++ ++.++..|..|+.+|+.+++ ..|+.+.
T Consensus 603 e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~ 647 (727)
T KOG0103|consen 603 EKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDEN 647 (727)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhh
Confidence 99999999999999997 68999999999999999998 5565554
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=691.58 Aligned_cols=525 Identities=55% Similarity=0.843 Sum_probs=489.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|..|++|+..||.||++.+||++|+.- ....+.+..+| +.|+|++|++++|+++++.
T Consensus 54 vG~~A~~q~~~~p~~t~~~~kr~~G~~~--------------------~~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ 111 (579)
T COG0443 54 VGQAAKRQAVDNPENTIFSIKRKIGRGS--------------------NGLKISVEVDG--KKYTPEEISAMILTKLKED 111 (579)
T ss_pred ecHHHHHHhhhCCcceEEEEehhcCCCC--------------------CCCcceeeeCC--eeeCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999871 11123344455 7899999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
||.++|.+++++|||||+|
T Consensus 112 ae~~lg~~v~~~VItVPay------------------------------------------------------------- 130 (579)
T COG0443 112 AEAYLGEKVTDAVITVPAY------------------------------------------------------------- 130 (579)
T ss_pred HHHhhCCCcceEEEEeCCC-------------------------------------------------------------
Confidence 9999988888875555555
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs 240 (655)
|++.||+++++|+++|||+++++++||+|||++|+.... .+..++|||+||||||+|
T Consensus 131 ---------------------F~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvS 187 (579)
T COG0443 131 ---------------------FNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVS 187 (579)
T ss_pred ---------------------CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEE
Confidence 566777788888888899999999999999999999877 788999999999999999
Q ss_pred EEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Q psy3270 241 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDAL 320 (655)
Q Consensus 241 v~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~ 320 (655)
++++.+| .++++++.||.++||+|||.+|.+|+.++|..+++.++..++..+++|+.+||++|+.||...+..+.+++.
T Consensus 188 ll~~~~g-~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~ 266 (579)
T COG0443 188 LLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSI 266 (579)
T ss_pred EEEEcCC-EEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhc
Confidence 9999977 999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 321 HEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 321 ~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
..+.++..+|||++||+++.+++.++..++..++++++++..+|+.|+||||++|||.|++.++++|+ +.+...+||++
T Consensus 267 ~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpde 345 (579)
T COG0443 267 GGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDE 345 (579)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccH
Confidence 77777889999999999999999999999999999999999999999999999999999999999995 88899999999
Q ss_pred HHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCc
Q psy3270 401 AVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGER 480 (655)
Q Consensus 401 ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~ 480 (655)
+||.|||++|+.+++.. .++++.|++|+++|+++.++.+.++|++|+.+|.++...|++..|+|+.+.+.+++|++
T Consensus 346 ava~GAa~qa~~l~~~~----~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~ 421 (579)
T COG0443 346 AVALGAAIQAAVLSGEV----PDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGER 421 (579)
T ss_pred HHHHHHHHHHHhhcCcc----cCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecch
Confidence 99999999999999832 38899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhh
Q psy3270 481 AMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKA 560 (655)
Q Consensus 481 ~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~ 560 (655)
....+|..+|.|.+.++||.+.|.+.|+++|.+|.||+++|++.+..+|+...++|....+ |++++++.+.+.+..+.+
T Consensus 422 ~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~ 500 (579)
T COG0443 422 EMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAA 500 (579)
T ss_pred hhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999877 999999999999999999
Q ss_pred hcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHH
Q psy3270 561 EDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTK 640 (655)
Q Consensus 561 ~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r 640 (655)
.|+..++..+.+|..+++++.++..|.+.. .+++++++++.+.+.+++.||+. . .++++.+.++|+....++..+
T Consensus 501 ~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~ 575 (579)
T COG0443 501 LDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEK 575 (579)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776 88899999999999999999998 2 889999999999999999988
Q ss_pred HHh
Q psy3270 641 LHQ 643 (655)
Q Consensus 641 ~~e 643 (655)
+++
T Consensus 576 ~~~ 578 (579)
T COG0443 576 KYQ 578 (579)
T ss_pred Hhc
Confidence 765
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=591.78 Aligned_cols=554 Identities=31% Similarity=0.483 Sum_probs=478.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
||.+|...+.|+|++++.+++.|||++.+||.++.+.+++||--+ .++.+..+.+.+++ ...|++|+++||+|.+++.
T Consensus 70 fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~ 148 (902)
T KOG0104|consen 70 FGEAAASMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKS 148 (902)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998887554 45567778777776 4789999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.||.++..+|+++|||||+||++.||+++++|+++||++++++|||.+|+|+.||+.++..
T Consensus 149 ~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~------------------- 209 (902)
T KOG0104|consen 149 LAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKE------------------- 209 (902)
T ss_pred HHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcccc-------------------
Confidence 9999999999999999999999999999999999999999999999999999998865311
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
-....++++|||||+|+|.+
T Consensus 210 ------------------------------------------------------------i~~~~q~~i~YDMGs~sT~A 229 (902)
T KOG0104|consen 210 ------------------------------------------------------------INETPQHYIFYDMGSGSTSA 229 (902)
T ss_pred ------------------------------------------------------------CCCCceEEEEEecCCCceeE
Confidence 01256889999999999999
Q ss_pred EEEEEe------CC---ceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHHhcC
Q psy3270 240 SVLAID------EG---SLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKK--DILANTRAVRRLRTACERAKRTLS 308 (655)
Q Consensus 240 sv~~~~------~~---~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~e~~K~~ls 308 (655)
+++.+. .| ..+++++.++|..|||..|+.+|.+|+.+.|.+.++. ++..+++++++|.++|+++|..||
T Consensus 230 tivsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLS 309 (902)
T KOG0104|consen 230 TIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLS 309 (902)
T ss_pred EEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhh
Confidence 999875 11 3789999999999999999999999999999988764 688899999999999999999999
Q ss_pred CCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhC
Q psy3270 309 SSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 309 ~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 388 (655)
+|..+.+.|+++.+++||...|||++||++|+++..|+..+|+++|..++++.++|+.|+|.||+||+|.||+.|.++.+
T Consensus 310 ANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~ 389 (902)
T KOG0104|consen 310 ANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVG 389 (902)
T ss_pred cchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCCCCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCc--------EEEEEEecCCccCcceeEE
Q psy3270 389 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGG--------VMTKIVERNSRIPCKQQQT 460 (655)
Q Consensus 389 ~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~--------~~~~ii~~~~~iP~~~~~~ 460 (655)
..++...+|.|+|+++||+++||.||. +|+++++.+.|.++|+|-++.... ....+|+++.++|..+..+
T Consensus 390 ~~ei~knlNaDEA~vmGav~~aA~LSk--sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~ 467 (902)
T KOG0104|consen 390 KEELGKNLNADEAAVMGAVYQAAHLSK--SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVIT 467 (902)
T ss_pred HHHHhcccChhHHHHHHHHHHHHhhcc--cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceee
Confidence 889999999999999999999999998 899999999999999887754322 2235899999999998888
Q ss_pred EEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCC----C---CCCeEEEEEEeCCCeeEEEEEEec-------
Q psy3270 461 FTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAP----R---GVPKIEVTFDLDANGILNVSAKDS------- 526 (655)
Q Consensus 461 ~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~----~---g~~~i~v~~~~d~~g~l~v~~~~~------- 526 (655)
|+.+.|+ +.+.+-.|.-. ..+-++.++++..+- . ....|+++|.+|.+|++.|+..+.
T Consensus 468 ~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~ 539 (902)
T KOG0104|consen 468 FTSYSDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKE 539 (902)
T ss_pred ccccCCc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCC
Confidence 8776664 34433332210 223477777765331 1 134699999999999999875420
Q ss_pred --------------cC-----------------------CC-c-------------------------------------
Q psy3270 527 --------------ST-----------------------GK-A------------------------------------- 531 (655)
Q Consensus 527 --------------~~-----------------------~~-~------------------------------------- 531 (655)
+| ++ +
T Consensus 540 ~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~ 619 (902)
T KOG0104|consen 540 EDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMV 619 (902)
T ss_pred cccchhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcce
Confidence 00 00 0
Q ss_pred eeeeeecC---CCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q psy3270 532 ERITIQND---KGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACS 606 (655)
Q Consensus 532 ~~~~i~~~---~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~--~~~~~~e~~~l~~~l~ 606 (655)
+.+.|... ...|+.+.++....++..+.++|+.+.++++|-|.||.|+|++.++|.++. .+.+++|+..|.+.+.
T Consensus 620 ~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~ 699 (902)
T KOG0104|consen 620 VRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVS 699 (902)
T ss_pred eEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHH
Confidence 01333332 235889999999999999999999999999999999999999999998766 8899999999999999
Q ss_pred HHHHHhccC-CccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 607 ATLTWLEGN-SLAEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 607 e~~~WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
.+.+||+++ .++++++|.+++++|+++...+..|..++
T Consensus 700 ~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 700 LLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999997 56889999999999999999999997775
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=389.12 Aligned_cols=296 Identities=25% Similarity=0.331 Sum_probs=241.9
Q ss_pred CChhhHHhhhcCcCcc--hhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNT--VFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMR 78 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~--~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~ 78 (655)
+|..|+++...+|.++ +..+||+||...-.+ + ....|+++++++|++++
T Consensus 88 ~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~---------------------------~--~~~~~e~l~a~iL~~lk 138 (450)
T PRK11678 88 FGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP---------------------------Q--QVALFEDLVCAMMLHIK 138 (450)
T ss_pred hhHHHHHhhccCCCCceEEecchhhhccCCCCc---------------------------c--ceeCHHHHHHHHHHHHH
Confidence 6999999999999999 779999999752110 0 22349999999999999
Q ss_pred HHHHHHhCCCCceEEEecCCCCC-----HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEecccc
Q psy3270 79 EIAEVYLGGKVSEAVITVPAYFN-----DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGG 153 (655)
Q Consensus 79 ~~ae~~~~~~i~~~vitvP~~f~-----~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~ 153 (655)
+.|+.++|.++.++|||||++|+ +.||++
T Consensus 139 ~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a---------------------------------------------- 172 (450)
T PRK11678 139 QQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQA---------------------------------------------- 172 (450)
T ss_pred HHHHHHhCCCCCcEEEEECCccccCCcchhHHHH----------------------------------------------
Confidence 99999999999999888888875 333321
Q ss_pred chhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeC
Q psy3270 154 TFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLG 233 (655)
Q Consensus 154 ~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~G 233 (655)
++++++||+.||++++++++||+|||++|+.... .+..+||||+|
T Consensus 173 ---------------------------------~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~~vlV~D~G 217 (450)
T PRK11678 173 ---------------------------------EGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEKRVLVVDIG 217 (450)
T ss_pred ---------------------------------HHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCCeEEEEEeC
Confidence 3447889999999999999999999999986543 67889999999
Q ss_pred CceeEEEEEEEeCCc------eEEEEEecCCCCCCcchHHHHHH-HHHHHHHHhh----ccccc----------------
Q psy3270 234 GGTFDVSVLAIDEGS------LFQVKSTAGDTHLGGEDFDNRLV-TFFADEFKRK----HKKDI---------------- 286 (655)
Q Consensus 234 ggT~dvsv~~~~~~~------~~~v~~~~~~~~lGG~~~d~~l~-~~~~~~~~~~----~~~~~---------------- 286 (655)
|||||+|++++.++. ..+++++.| ..+||+|||..|+ +++...|... .+.++
T Consensus 218 GGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~ 296 (450)
T PRK11678 218 GGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPA 296 (450)
T ss_pred CCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccch
Confidence 999999999986531 368899888 5799999999998 6777777421 11100
Q ss_pred -------------------cccHHHH------------HHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHH
Q psy3270 287 -------------------LANTRAV------------RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARF 335 (655)
Q Consensus 287 -------------------~~~~~~~------------~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~ 335 (655)
..+++.+ .+|+.+||++|+.||.+..+.+.++.+.. ++..+|||++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~~~~~ItR~ef 374 (450)
T PRK11678 297 QSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD--GLATEISQQGL 374 (450)
T ss_pred hhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC--CcceeeCHHHH
Confidence 0122223 36889999999999999999998876543 46789999999
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
+++++|+++++..+++++|+++++. ++.|+||||+|++|+|++.+++.||+.++. ..+|..+||.|+|++|..+
T Consensus 375 e~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 375 EEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHHHHHhh
Confidence 9999999999999999999999876 478999999999999999999999665554 5699999999999999754
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=285.34 Aligned_cols=219 Identities=22% Similarity=0.409 Sum_probs=180.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..+|+++++|++.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... ..
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lVvDiGggttdvsvv~~g~--~~-- 170 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS--QPSGNMVVDIGGGTTDIAVLSLGG--IV-- 170 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEEeCC--EE--
Confidence 568888888899999999999999999999999999999999998644 567799999999999999998642 22
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC----CceEEEEc--cccCCcce
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----TEASLEID--ALHEGIDF 326 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----~~~~i~i~--~~~~~~~~ 326 (655)
..++..+||++||+.|.+++.+++....+ ...||++|+.++.. ....+.+. .+..+.+.
T Consensus 171 --~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 235 (336)
T PRK13928 171 --TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPK 235 (336)
T ss_pred --EeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCce
Confidence 34578999999999999999876642211 24699999998643 12333332 22345567
Q ss_pred EEeecHHHHHHHhhHHHHhhhhHHHHHHHHcC--CCCCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHH
Q psy3270 327 YSKITRARFEELCMDLFRQTLAPVERALNDAK--LDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA 403 (655)
Q Consensus 327 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava 403 (655)
..+|+|++|++++.++++++.+.|.+.|+.++ +..+.++ .|+|+||+|++|++++++++.| +.++....||+++||
T Consensus 236 ~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava 314 (336)
T PRK13928 236 TITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVA 314 (336)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHH
Confidence 78999999999999999999999999999986 4455677 7999999999999999999999 678888889999999
Q ss_pred hHHHHHHHHH
Q psy3270 404 YGAAVQAAIL 413 (655)
Q Consensus 404 ~GAa~~a~~l 413 (655)
+|||+++..+
T Consensus 315 ~Gaa~~~~~~ 324 (336)
T PRK13928 315 LGTGKMLENI 324 (336)
T ss_pred HHHHHHHhch
Confidence 9999998764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=280.22 Aligned_cols=216 Identities=21% Similarity=0.380 Sum_probs=173.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..||+++.+|++.||++++.+++||+|||++|+.... ...+++|+|+||||||++++.+.. ..
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lvvDiG~gtt~v~vi~~~~--~~-- 173 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVVVDIGGGTTEVAIISFGG--VV-- 173 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEEEEeCCCeEEEEEEEeCC--EE--
Confidence 346666666777888888889999999999999999999999987644 567899999999999999997642 22
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC----ceEEEEc--cccCCcce
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----EASLEID--ALHEGIDF 326 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~i~i~--~~~~~~~~ 326 (655)
..++..+||++||+.|.+++.+.+. ... . ...||++|+.++... ...+.+. .+..+.+.
T Consensus 174 --~~~~~~~GG~~id~~l~~~l~~~~~----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~ 238 (335)
T PRK13929 174 --SCHSIRIGGDQLDEDIVSFVRKKYN----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK 238 (335)
T ss_pred --EecCcCCHHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe
Confidence 3455789999999999999976542 211 1 246999999998631 2223332 12345567
Q ss_pred EEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHH
Q psy3270 327 YSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA 403 (655)
Q Consensus 327 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava 403 (655)
.+.++|++|++++.+++.++.+.|.+.|+.++.. ...++ +|+|+||+|++|++++++++.| +.++....||+++|+
T Consensus 239 ~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va 317 (335)
T PRK13929 239 TITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVA 317 (335)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHH
Confidence 8899999999999999999999999999998643 35677 6999999999999999999999 678888889999999
Q ss_pred hHHHHHH
Q psy3270 404 YGAAVQA 410 (655)
Q Consensus 404 ~GAa~~a 410 (655)
.||+..-
T Consensus 318 ~Ga~~~~ 324 (335)
T PRK13929 318 IGTGRSL 324 (335)
T ss_pred HHHHHHH
Confidence 9999874
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=259.94 Aligned_cols=219 Identities=23% Similarity=0.398 Sum_probs=179.8
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
..+|+|+|++|+..+|++++.|++.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++.... .
T Consensus 97 ~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvDiGggttdvs~v~~~~~--~- 171 (334)
T PRK13927 97 PRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVDIGGGTTEVAVISLGGI--V- 171 (334)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEecCCe--E-
Confidence 4899999999999999999999999999999999999999999987643 5667899999999999999976432 1
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc----eEEEE--ccccCCcc
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE----ASLEI--DALHEGID 325 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~~i~i--~~~~~~~~ 325 (655)
..++..+||++||+.|.+++.+.+.. .. . ...||++|+.++.... ..+.+ +....+.+
T Consensus 172 ---~~~~~~lGG~~id~~l~~~l~~~~~~----~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PRK13927 172 ---YSKSVRVGGDKFDEAIINYVRRNYNL----LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLP 235 (334)
T ss_pred ---eeCCcCChHHHHHHHHHHHHHHHhCc----Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCC
Confidence 23456899999999999999765532 11 1 2358999999875322 22333 22334556
Q ss_pred eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHH
Q psy3270 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402 (655)
Q Consensus 326 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~av 402 (655)
..++|+|++|++++.+.++++.+.|.++|+.++.. ...++ .|+|+||+|++|+++++|++.| +.++....+|+++|
T Consensus 236 ~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~av 314 (334)
T PRK13927 236 KTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCV 314 (334)
T ss_pred eEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHH
Confidence 68899999999999999999999999999998643 23344 5999999999999999999999 67788888999999
Q ss_pred HhHHHHHHHH
Q psy3270 403 AYGAAVQAAI 412 (655)
Q Consensus 403 a~GAa~~a~~ 412 (655)
|+||++++..
T Consensus 315 a~Ga~~~~~~ 324 (334)
T PRK13927 315 ARGTGKALEN 324 (334)
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=256.16 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=174.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..+|+++++|++.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++....
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvDiG~gttdvs~v~~~~~----- 172 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVDIGGGTTEVAVISLGGI----- 172 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEEcCCCeEEEEEEEeCCE-----
Confidence 468888888899999999999999999999999999999999987543 5678999999999999999986432
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc-----eEEEEcc--ccCCcc
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE-----ASLEIDA--LHEGID 325 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~-----~~i~i~~--~~~~~~ 325 (655)
...++..+||++||+.|.+++.+.+. ... . +..||++|+.++.... ..+.+.. ...+.+
T Consensus 173 -~~~~~~~lGG~did~~l~~~l~~~~~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (333)
T TIGR00904 173 -VVSRSIRVGGDEFDEAIINYIRRTYN----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLP 238 (333)
T ss_pred -EecCCccchHHHHHHHHHHHHHHHhc----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCC
Confidence 12345689999999999999976542 111 1 2469999999875321 1222221 112344
Q ss_pred eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCC-CCc-c-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHH
Q psy3270 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK-GSI-H-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402 (655)
Q Consensus 326 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~av 402 (655)
....+++++|.+++.+.++++.+.+.+.++.++... .++ + .|+|+||+|++|+++++|++.| +.++....||+++|
T Consensus 239 ~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~v 317 (333)
T TIGR00904 239 RTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCV 317 (333)
T ss_pred eEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHH
Confidence 567899999999999999999999999999876442 233 3 6999999999999999999999 67888889999999
Q ss_pred HhHHHHHHHH
Q psy3270 403 AYGAAVQAAI 412 (655)
Q Consensus 403 a~GAa~~a~~ 412 (655)
|.||++++..
T Consensus 318 a~Ga~~~~~~ 327 (333)
T TIGR00904 318 AKGTGKALED 327 (333)
T ss_pred HHHHHHHHhC
Confidence 9999998753
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=242.13 Aligned_cols=204 Identities=21% Similarity=0.316 Sum_probs=166.6
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGE 142 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~ 142 (655)
.+.--+.++++|+++++.|+.++|.++.++|+|||++|
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~------------------------------------------ 72 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGT------------------------------------------ 72 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCC------------------------------------------
Confidence 56777889999999999999988888888866666655
Q ss_pred eeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccC
Q psy3270 143 KNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222 (655)
Q Consensus 143 ~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~ 222 (655)
++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 73 ----------------------------------------~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---- 108 (239)
T TIGR02529 73 ----------------------------------------IEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---- 108 (239)
T ss_pred ----------------------------------------CcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----
Confidence 556677777888888899999999999999998643
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACER 302 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 302 (655)
..+|+|+||||||+++++. | . +.. ..+..+||++||+.|.+.+ +.+ ..+||+
T Consensus 109 ---~~~vvDiGggtt~i~i~~~--G-~--i~~-~~~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~ 160 (239)
T TIGR02529 109 ---NGAVVDVGGGTTGISILKK--G-K--VIY-SADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEE 160 (239)
T ss_pred ---CcEEEEeCCCcEEEEEEEC--C-e--EEE-EEeeecchHHHHHHHHHHh--------CCC-----------HHHHHH
Confidence 2599999999999999863 4 2 122 3356799999999887554 121 246999
Q ss_pred HHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHH
Q psy3270 303 AKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 303 ~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
+|+.++. .+++.++++++++++.+.+++.|++.+ ++.|+|+||+|++|++++.
T Consensus 161 ~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~ 213 (239)
T TIGR02529 161 YKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADV 213 (239)
T ss_pred HHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHH
Confidence 9987541 456778999999999999999998643 5689999999999999999
Q ss_pred HHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 383 LQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 383 l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
+++.| +.++..+.||++++|.|||+
T Consensus 214 l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 214 FEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHh-CCCcccCCCCCeehhheeec
Confidence 99999 67888899999999999986
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=248.49 Aligned_cols=233 Identities=23% Similarity=0.350 Sum_probs=184.1
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCcee
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTF 237 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~ 237 (655)
++.+......+.....+|+|+|++|+..+|+.+.+|++.+|++.+.+++||+|||++|+.... .....+|+|+|||||
T Consensus 87 ~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVvDiG~gtt 164 (335)
T PRK13930 87 YFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVVDIGGGTT 164 (335)
T ss_pred HHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEEEeCCCeE
Confidence 343434333344578899999999999999999999999999999999999999999987543 455689999999999
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc----e
Q psy3270 238 DVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE----A 313 (655)
Q Consensus 238 dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~ 313 (655)
|++++.... .. ..+...+||.+||+.|.+++.+++. .+.. ...||++|+.++.... .
T Consensus 165 dvs~v~~g~--~~----~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~ 225 (335)
T PRK13930 165 EVAVISLGG--IV----YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEE 225 (335)
T ss_pred EEEEEEeCC--EE----eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCc
Confidence 999997542 22 2455789999999999999977542 2111 2468999999875432 1
Q ss_pred EEEEc--cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcce-EEEecCccchHHHHHHHHhhhC
Q psy3270 314 SLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIHD-VVLVGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 314 ~i~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~s~~p~v~~~l~~~f~ 388 (655)
.+.+. ....+.+....|++++|++++.+.++++.+.+.++++.+... .+.++. |+|+||+|++|+++++|++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~- 304 (335)
T PRK13930 226 SMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET- 304 (335)
T ss_pred eEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-
Confidence 23332 223344567889999999999999999999999999987533 233454 999999999999999999999
Q ss_pred CCcccCCCCchhHHHhHHHHHHHH
Q psy3270 389 GKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 389 ~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
+.++....+|+.+||.||++.+..
T Consensus 305 ~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 305 GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred CCCceecCCHHHHHHHHHHHHHhC
Confidence 577888889999999999999854
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=225.17 Aligned_cols=176 Identities=24% Similarity=0.389 Sum_probs=143.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEE
Q psy3270 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS 254 (655)
Q Consensus 175 vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~ 254 (655)
+++||++|+..+++++.+|++.||+++..+++||.|++.+|... ..+++|+||||||+++++ ++ .+ ..
T Consensus 92 ~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~vvDIGggtt~i~v~~--~g-~~--~~ 159 (267)
T PRK15080 92 ATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGAVVDIGGGTTGISILK--DG-KV--VY 159 (267)
T ss_pred EEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcEEEEeCCCcEEEEEEE--CC-eE--EE
Confidence 44445555566777888899999999999999999999987642 158999999999999975 34 22 22
Q ss_pred ecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHH
Q psy3270 255 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334 (655)
Q Consensus 255 ~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~ 334 (655)
.++..+||++||+.|.+++. .+ +.+||++|+.++ ++++
T Consensus 160 -~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~~----------------------~~~~ 197 (267)
T PRK15080 160 -SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDPK----------------------HHKE 197 (267)
T ss_pred -EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhccC----------------------CHHH
Confidence 24678999999999987752 11 346899998753 3578
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHH
Q psy3270 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 335 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 410 (655)
+.++++|+++++.+.+++.++.. .++.|+|+||+|++|++++.+++.| +.++..+.+|++++|.|||+++
T Consensus 198 ~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 198 IFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 89999999999999999999864 5789999999999999999999999 7788889999999999999874
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=221.66 Aligned_cols=307 Identities=17% Similarity=0.228 Sum_probs=212.8
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
....++. ++..|+++++.||+.++.+++++++++|+........ --..-++.-.+-.+....++.++....+..
T Consensus 42 ~I~d~~~-~~~~i~~al~~~e~~~~~~i~~v~~~v~g~~v~~~~~-----~~~i~~~~~~i~~~di~~~~~~~~~~~~~~ 115 (371)
T TIGR01174 42 VINDIEA-AVGSIQRAIEAAELMAGCEIRSVIVSISGAHIKSQNS-----IGVVAIKDKEVTQEDIERVLETAKAVAIPN 115 (371)
T ss_pred EEEcHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEcccceEEEee-----eEEEEcCCCeeCHHHHHHHHHHhhcccCCC
Confidence 5566666 5899999999999999999999999999873211000 000001111233444555555554444444
Q ss_pred CeeEEEEeccccchhhHH-HHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccc
Q psy3270 142 EKNVLIFDLGGGTFDVSM-REIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~~l-~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~ 218 (655)
+...+-+.+....++... ........|. .+.-.+++.| ....+.+.+|++.||+++..++.||.|+|++|...
T Consensus 116 ~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~lva~~----~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~ 191 (371)
T TIGR01174 116 DQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIITGS----STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTE 191 (371)
T ss_pred CCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEEEEEE----HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCc
Confidence 444444444444443210 0111111111 2345556665 46778889999999999999999999999998654
Q ss_pred cccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy3270 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRT 298 (655)
Q Consensus 219 ~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (655)
.. .+..++|+|+||||||++++.. + .... .....+||++||+.|.+.+. ..+.
T Consensus 192 ~~--~~~~~~vvDiG~gtt~i~i~~~--g-~~~~---~~~i~~GG~~it~~i~~~l~-------------------~~~~ 244 (371)
T TIGR01174 192 DE--KELGVCLIDIGGGTTDIAVYTG--G-SIRY---TKVIPIGGNHITKDIAKALR-------------------TPLE 244 (371)
T ss_pred ch--hcCCEEEEEeCCCcEEEEEEEC--C-EEEE---EeeecchHHHHHHHHHHHhC-------------------CCHH
Confidence 33 4678999999999999999863 3 2211 22357999999999876541 1245
Q ss_pred HHHHHHHhcCCC------CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHH-HHHHHcCCCCCCcce-EEEe
Q psy3270 299 ACERAKRTLSSS------TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVE-RALNDAKLDKGSIHD-VVLV 370 (655)
Q Consensus 299 ~~e~~K~~ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLv 370 (655)
+||++|+.++.. ....+.++... .+....++|++|+++++++++++++.+. +.|+.++.. .+++. |+|+
T Consensus 245 ~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLt 321 (371)
T TIGR01174 245 EAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLT 321 (371)
T ss_pred HHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEe
Confidence 799999999753 23456665443 3456799999999999999999999997 999998876 56776 9999
Q ss_pred cCccchHHHHHHHHhhhCCCcccCC------------CCchhHHHhHHHHH
Q psy3270 371 GGSIRIPKIQKMLQDFFNGKSLNLS------------INPDEAVAYGAAVQ 409 (655)
Q Consensus 371 GG~s~~p~v~~~l~~~f~~~~v~~~------------~~p~~ava~GAa~~ 409 (655)
||+|++|++++++++.|+ .+++.. -+|..++|.|.++|
T Consensus 322 GG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 322 GGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred ChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999999999999999994 433221 27889999998864
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=221.31 Aligned_cols=309 Identities=16% Similarity=0.183 Sum_probs=210.4
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
+.-.+-++.-++++++.||..+|.+++++++++|+..-..... -....+..-.+-.+....++..+.......+.
T Consensus 51 I~d~~~~~~aI~~av~~ae~~~g~~i~~v~v~i~g~~v~~~~~-----~~~~~~~~~~I~~~dv~~~~~~a~~~~~~~~~ 125 (420)
T PRK09472 51 VNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNE-----IGMVPISEEEVTQEDVENVVHTAKSVRVRDEH 125 (420)
T ss_pred EEcHHHHHHHHHHHHHHHHHHhCCcccEEEEEecCcceEEEee-----eEEEEcCCCeeCHHHHHHHHHHhhccCCCCCC
Confidence 3445667889999999999999999999999999874211000 00000011123444555566666555555555
Q ss_pred eEEEEeccccchhhH-HHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccc
Q psy3270 144 NVLIFDLGGGTFDVS-MREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 220 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~-l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~ 220 (655)
..+.+-+....+|.. .........|. .+.-.+++.|. ...+.+.+|++.||+++..++.||.|+|.++.....
T Consensus 126 ~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~lv~~~~----~~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e 201 (420)
T PRK09472 126 RILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHN----DMAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE 201 (420)
T ss_pred EEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEEEEEch----HHHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh
Confidence 444444444444431 11112222333 23344566653 344555679999999999999999999999876543
Q ss_pred cCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Q psy3270 221 LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTAC 300 (655)
Q Consensus 221 ~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (655)
.+..++|+|+||||||++++. +| .+.. ....++||++|++.|...+. . ....|
T Consensus 202 --~~~gv~vvDiGggtTdisv~~--~G-~l~~---~~~i~~GG~~it~dIa~~l~--------i-----------~~~~A 254 (420)
T PRK09472 202 --RELGVCVVDIGGGTMDIAVYT--GG-ALRH---TKVIPYAGNVVTSDIAYAFG--------T-----------PPSDA 254 (420)
T ss_pred --hhcCeEEEEeCCCceEEEEEE--CC-EEEE---EeeeechHHHHHHHHHHHhC--------c-----------CHHHH
Confidence 577899999999999999997 34 2211 12256999999999976551 1 13569
Q ss_pred HHHHHhcCCC------CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHH-------HHHHcCCCCCCcceE
Q psy3270 301 ERAKRTLSSS------TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVER-------ALNDAKLDKGSIHDV 367 (655)
Q Consensus 301 e~~K~~ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V 367 (655)
|++|+.+... ....+.++...+.. ...++|.+|.+++++.++++++.+.+ .+..+++....+++|
T Consensus 255 E~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~gi 332 (420)
T PRK09472 255 EAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGI 332 (420)
T ss_pred HHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEE
Confidence 9999776431 23456665443322 24889999999999988777777765 456677777788999
Q ss_pred EEecCccchHHHHHHHHhhhCCCcccC------------CCCchhHHHhHHHHHHH
Q psy3270 368 VLVGGSIRIPKIQKMLQDFFNGKSLNL------------SINPDEAVAYGAAVQAA 411 (655)
Q Consensus 368 iLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~ava~GAa~~a~ 411 (655)
+|+||+|++|+|++++++.| +.+++. ..+|.+++|.|.++++.
T Consensus 333 vLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 333 VLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred EEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 99999999999999999999 444432 23899999999999986
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=213.05 Aligned_cols=219 Identities=27% Similarity=0.444 Sum_probs=167.3
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
.-..++++||+.-+..+|+++.+|+..||.+.+.++.||.|||+..+.+-. .....||+|+||||||++++.. |..
T Consensus 92 ~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~--~~~g~miVDIG~GtTdiavisl--ggi 167 (326)
T PF06723_consen 92 FRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF--EPRGSMIVDIGGGTTDIAVISL--GGI 167 (326)
T ss_dssp S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT--SSS-EEEEEE-SS-EEEEEEET--TEE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC--CCCceEEEEECCCeEEEEEEEC--CCE
Confidence 467899999999999999999999999999999999999999999998744 6788999999999999999964 323
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC----ceEEEEc--cccCC
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----EASLEID--ALHEG 323 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~i~i~--~~~~~ 323 (655)
..-.. ...||++||+.|.+|+.+++.-. +. ...||++|+.++... ...+.+. .+..|
T Consensus 168 v~s~s----i~~gG~~~DeaI~~~ir~~y~l~----Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tG 230 (326)
T PF06723_consen 168 VASRS----IRIGGDDIDEAIIRYIREKYNLL----IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITG 230 (326)
T ss_dssp EEEEE----ES-SHHHHHHHHHHHHHHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTT
T ss_pred EEEEE----EEecCcchhHHHHHHHHHhhCcc----cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCC
Confidence 33222 56899999999999998877421 11 134999999987532 2344443 35678
Q ss_pred cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCC-CCc--ceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 324 IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK-GSI--HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 324 ~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
.+..+.|+-+++.+.+.+.+.++.+.|+++|+...... .|| ++|+|+||+|+++++.++|++.+ +.++...-+|..
T Consensus 231 lP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~ 309 (326)
T PF06723_consen 231 LPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLT 309 (326)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTT
T ss_pred CcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHH
Confidence 88899999999999999999999999999999864221 132 46999999999999999999999 789999999999
Q ss_pred HHHhHHHHHH
Q psy3270 401 AVAYGAAVQA 410 (655)
Q Consensus 401 ava~GAa~~a 410 (655)
+||.||....
T Consensus 310 ~va~G~~~~l 319 (326)
T PF06723_consen 310 AVARGAGKLL 319 (326)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=204.10 Aligned_cols=312 Identities=22% Similarity=0.286 Sum_probs=237.6
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCce-eeeccchhHHHHhhccccccCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV-LRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~-~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
.+.--+.++..++++++.||.+.|..++++++++++.+...+. .--..-++. ..+-.++.-.++..+.......
T Consensus 48 ~I~di~~~~~sI~~av~~AE~mag~~i~~v~vs~sG~~i~s~~-----~~g~v~i~~~~eIt~~DI~rvl~~A~~~~~~~ 122 (418)
T COG0849 48 VIVDLDAAAQSIKKAVEAAERMAGCEIKSVIVSLSGNHIKSQN-----VNGEVSISEEKEITQEDIERVLEAAKAVAIPP 122 (418)
T ss_pred eEEcHHHHHHHHHHHHHHHHHhcCCCcceEEEEeccceeEEEe-----eEEEEEcCCCCccCHHHHHHHHHHHHhhccCC
Confidence 4555667889999999999999999999999999997643221 011122223 4444555666777777777777
Q ss_pred CeeEEEEeccccchhh-HHHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccc
Q psy3270 142 EKNVLIFDLGGGTFDV-SMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~-~l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~ 218 (655)
+...+-+-+.++.+|- .-+.+...+.|. .+.-.++|+|.. --+.+.+|.+.+|+++..++.+|.|+|.+...+
T Consensus 123 ~~~ilh~~p~~y~vD~~~~I~dP~gm~G~rL~v~vhvit~~~~----~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~ 198 (418)
T COG0849 123 EREILHVIPQEYIVDGQEGIKDPLGMSGVRLEVEVHVITGPKN----ILENLEKCVERAGLKVDNIVLEPLASALAVLTE 198 (418)
T ss_pred CceEEEEeeeEEEECCccccCCccccccceEEEEEEEEEcchH----HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCc
Confidence 7777777777777775 344444555554 466677888764 467899999999999999999999999999877
Q ss_pred cccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy3270 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRT 298 (655)
Q Consensus 219 ~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (655)
.. ++.+++++|+||||||+++++ +| .+ .+.+-.++||++++.+|..-|.-. +.
T Consensus 199 dE--kelGv~lIDiG~GTTdIai~~--~G-~l---~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~ 251 (418)
T COG0849 199 DE--KELGVALIDIGGGTTDIAIYK--NG-AL---RYTGVIPVGGDHVTKDIAKGLKTP-------------------FE 251 (418)
T ss_pred cc--HhcCeEEEEeCCCcEEEEEEE--CC-EE---EEEeeEeeCccHHHHHHHHHhCCC-------------------HH
Confidence 65 788999999999999999997 34 22 222336799999999998766322 23
Q ss_pred HHHHHHHhcCCC------CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecC
Q psy3270 299 ACERAKRTLSSS------TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGG 372 (655)
Q Consensus 299 ~~e~~K~~ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG 372 (655)
.||++|..+... ....+.++...+.. ...+||.++.+++++.+++++.+++..|++.++...-...|+|+||
T Consensus 252 ~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG 329 (418)
T COG0849 252 EAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGG 329 (418)
T ss_pred HHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECc
Confidence 599999988543 23445665543333 5689999999999999999999999999999998777889999999
Q ss_pred ccchHHHHHHHHhhhCCCcccC------------CCCchhHHHhHHHHHHHHH
Q psy3270 373 SIRIPKIQKMLQDFFNGKSLNL------------SINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 373 ~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~ava~GAa~~a~~l 413 (655)
++.+|++.+..++.|+ .+++. ..+|.++.|.|..++++..
T Consensus 330 ~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 330 GAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred hhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 9999999999999993 43322 2368999999999998754
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-21 Score=186.18 Aligned_cols=223 Identities=22% Similarity=0.377 Sum_probs=180.8
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
....++++||..-+..+|+++++|++.||.+.+.++.||.|||+..+..-. .+..-+|+|+||||||++++.+.+ .
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlgg--i 175 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGG--I 175 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecC--E
Confidence 344699999999999999999999999999999999999999999887644 566789999999999999998753 2
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC--------ceEEEEcccc
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST--------EASLEIDALH 321 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~--------~~~i~i~~~~ 321 (655)
..-. ...+||+.||+.|.+|+.++|+--.| .+ .||++|+...... +.++.-..+.
T Consensus 176 v~~~----Sirv~GD~~De~Ii~yvr~~~nl~IG------e~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~ 238 (342)
T COG1077 176 VSSS----SVRVGGDKMDEAIIVYVRKKYNLLIG------ER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLV 238 (342)
T ss_pred EEEe----eEEEecchhhHHHHHHHHHHhCeeec------HH-------HHHHHHHHhcccccccCCccceeeEEeeecc
Confidence 2211 15699999999999999877653222 22 3788888764321 1233344456
Q ss_pred CCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcce-EEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 322 EGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIHD-VVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 322 ~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
.|.+-.++++-++..+.+++.+++|++.++..|+...-. .+-++. ++|+||+|.+..+.+.+++.. +.++....+|
T Consensus 239 ~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~p 317 (342)
T COG1077 239 TGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDP 317 (342)
T ss_pred cCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCCh
Confidence 677888999999999999999999999999999986532 233455 999999999999999999998 7788888999
Q ss_pred hhHHHhHHHHHHHHHc
Q psy3270 399 DEAVAYGAAVQAAILS 414 (655)
Q Consensus 399 ~~ava~GAa~~a~~l~ 414 (655)
-.|||+|+......+.
T Consensus 318 L~~Va~G~G~~le~~~ 333 (342)
T COG1077 318 LTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHhccchhhhhhH
Confidence 9999999998876554
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-15 Score=135.36 Aligned_cols=205 Identities=23% Similarity=0.336 Sum_probs=160.3
Q ss_pred EEEEe-ccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCC
Q psy3270 145 VLIFD-LGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 223 (655)
Q Consensus 145 ~~~~d-~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~ 223 (655)
.+++| +++-.+..++++.+|..+|..+....-++|..-.....+...+..+.||++++..++||+|||.-..++..
T Consensus 66 GiVvdf~eaveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg--- 142 (277)
T COG4820 66 GIVVDFFEAVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG--- 142 (277)
T ss_pred ceEEehhhHHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC---
Confidence 34455 45556677999999999999999999999999877778888889999999999999999999976665433
Q ss_pred CceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Q psy3270 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERA 303 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 303 (655)
.|+|+|||||-+|+++- | +|+.+ .|..-||.+++..|+-+ ++++ ..+||..
T Consensus 143 ----~VVDiGGGTTGIsi~kk--G---kViy~-ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~ 193 (277)
T COG4820 143 ----GVVDIGGGTTGISIVKK--G---KVIYS-ADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQY 193 (277)
T ss_pred ----cEEEeCCCcceeEEEEc--C---cEEEe-ccCCCCceeEEEEEecc--------cCcC-----------HhHHHHh
Confidence 79999999999999974 3 33333 35679999988766432 2333 2357777
Q ss_pred HHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHH
Q psy3270 304 KRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 383 (655)
Q Consensus 304 K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 383 (655)
|+.--.. +|.-..+.|.++++.+.+.+.++..+ +..+.|+||+|.-|.+.+..
T Consensus 194 Kr~~k~~----------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~F 246 (277)
T COG4820 194 KRGHKKG----------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELF 246 (277)
T ss_pred hhccccc----------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHH
Confidence 7542111 12223467899999999999998766 45599999999999999999
Q ss_pred HhhhCCCcccCCCCchhHHHhHHHHH
Q psy3270 384 QDFFNGKSLNLSINPDEAVAYGAAVQ 409 (655)
Q Consensus 384 ~~~f~~~~v~~~~~p~~ava~GAa~~ 409 (655)
++.| +.++..+..|.+..-+|.|+-
T Consensus 247 e~~l-~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 247 EKQL-ALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred HHHh-ccccccCCCcceechhhhhhc
Confidence 9999 889999999998888887753
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=121.32 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=127.2
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcc-----cccccCCCc-eEEEEEeCCceeEEEEEEEe
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYG-----LDKNLKGEK-NVLIFDLGGGTFDVSVLAID 245 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~-----~~~~~~~~~-~vlV~D~GggT~dvsv~~~~ 245 (655)
.-.++++| ....+.+.++++.||+++..+..+|.|.+-.+. .... .... +++++|+|+++|+++++.
T Consensus 134 ~v~v~a~~----~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~-- 206 (348)
T TIGR01175 134 QVLLAATR----KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLH-- 206 (348)
T ss_pred EEEEEEec----HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEE--
Confidence 34455554 567888899999999999999999999876653 1111 1233 499999999999999996
Q ss_pred CCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcc
Q psy3270 246 EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID 325 (655)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~ 325 (655)
+| .+.. .....+||.+|++.+.+.+ +.+ ..+||+.|...+....
T Consensus 207 ~g-~~~~---~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~------------- 250 (348)
T TIGR01175 207 PG-RMLF---TREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL------------- 250 (348)
T ss_pred CC-eEEE---EEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc-------------
Confidence 33 2211 1125699999999886433 222 2458888865432110
Q ss_pred eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHc--CCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccC---------
Q psy3270 326 FYSKITRARFEELCMDLFRQTLAPVERALNDA--KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL--------- 394 (655)
Q Consensus 326 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~--------- 394 (655)
.-.+++++.++++...|.+.++.. ......++.|+|+||+++++.+.+.+++.| +.++..
T Consensus 251 --------~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~ 321 (348)
T TIGR01175 251 --------YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMAL 321 (348)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhccc
Confidence 012456677777777778877643 222345899999999999999999999999 333321
Q ss_pred ----------CCCchhHHHhHHHHHH
Q psy3270 395 ----------SINPDEAVAYGAAVQA 410 (655)
Q Consensus 395 ----------~~~p~~ava~GAa~~a 410 (655)
...|..++|.|+|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 322 DAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 1245678888888764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-10 Score=117.11 Aligned_cols=186 Identities=20% Similarity=0.312 Sum_probs=117.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHccccc-cc---CCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 174 AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK-NL---KGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 174 ~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~-~~---~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
.++++| ....+...++++.|||++..+=-+|.|.+-.+.... .. .....++++|+|+.++.+.++. +| .
T Consensus 129 ll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g-~ 201 (340)
T PF11104_consen 129 LLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NG-K 201 (340)
T ss_dssp EEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TT-E
T ss_pred EEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CC-E
Confidence 445554 456677788999999999888777877655544321 11 1345799999999999999986 44 3
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEe
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSK 329 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~ 329 (655)
..... ...+||.++++.|.+.+.-.+ .+||+.|..-+-..
T Consensus 202 ~~f~R---~i~~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~------------------ 241 (340)
T PF11104_consen 202 PIFSR---SIPIGGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE------------------ 241 (340)
T ss_dssp EEEEE---EES-SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT----------------------
T ss_pred EEEEE---EEeeCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc------------------
Confidence 22221 256999999999987642221 24677766522100
Q ss_pred ecHHHHHHHhhHHHHhhhhHHHHHHHH--cCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc---------CCC--
Q psy3270 330 ITRARFEELCMDLFRQTLAPVERALND--AKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN---------LSI-- 396 (655)
Q Consensus 330 itr~~~e~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~---------~~~-- 396 (655)
+...+.+.+.++++...|.+.++- +......|+.|+|+||++++|++.+.|++.| +.++. .+.
T Consensus 242 ---~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~ 317 (340)
T PF11104_consen 242 ---EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKI 317 (340)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCccc
Confidence 233456677777777777777763 2234557999999999999999999999999 44322 111
Q ss_pred --------CchhHHHhHHHHHH
Q psy3270 397 --------NPDEAVAYGAAVQA 410 (655)
Q Consensus 397 --------~p~~ava~GAa~~a 410 (655)
.|..++|.|.|+++
T Consensus 318 ~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 318 NSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhhHHHHHHHHhhcC
Confidence 36789999999875
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=128.50 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=145.5
Q ss_pred cceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
-..+++++|..++..+|+.+.+. .+..|+..+.++++|.+|+++++. .+.+|+|+|+++|+++.+. +|..
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~--~G~~ 165 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVVDSGDGVTHVVPVY--DGYV 165 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEEECCCCeeEEEEEE--CCEE
Confidence 46799999999998888888775 667999999999999999999864 5679999999999998875 3412
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC---Cce-----------EE
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS---TEA-----------SL 315 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~---~~~-----------~i 315 (655)
+ ........+||.++|+.|.+++..... ..+.. .-...++.+|+.+..- ... ..
T Consensus 166 ~--~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (371)
T cd00012 166 L--PHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLE 233 (371)
T ss_pred c--hhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccc
Confidence 1 122234679999999999998854321 00111 1122356666654321 000 00
Q ss_pred EEccccCCcceEEeecHHHHH---HHhhHH-----HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHHh
Q psy3270 316 EIDALHEGIDFYSKITRARFE---ELCMDL-----FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~e---~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
....+.++. .+.++.+.|. .++.|. ...+.+.|.+++.....+ ..-.+.|+|+||+|++|++.++|.+
T Consensus 234 ~~~~lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~ 311 (371)
T cd00012 234 KTYELPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQK 311 (371)
T ss_pred eeEECCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHH
Confidence 001122222 3445544331 233332 236778888888776432 3346789999999999999999998
Q ss_pred hhCCC---------cccCCCCchhHHHhHHHHHHHH
Q psy3270 386 FFNGK---------SLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 386 ~f~~~---------~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.+... .+....+|..++-+||+++|..
T Consensus 312 el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 312 ELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88311 2234568889999999999853
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=121.00 Aligned_cols=209 Identities=16% Similarity=0.217 Sum_probs=136.9
Q ss_pred cceEE--EEeCCCCCHHHH-HHHHHHHHHc------------CCcceeecChHHHHHHHcccccc------cCCCceEEE
Q psy3270 171 VSEAV--ITVPAYFNDSQR-QATKDAGSIA------------GLNVLRIINEPTAAALAYGLDKN------LKGEKNVLI 229 (655)
Q Consensus 171 ~~~~v--itVPa~~~~~~r-~~~~~a~~~A------------Gl~~~~li~Ep~Aaal~~~~~~~------~~~~~~vlV 229 (655)
+.+++ ...|..+...++ ..+++..... -+..+.++.||.+|.+.+..... ......++|
T Consensus 110 ~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilv 189 (344)
T PRK13917 110 VVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSV 189 (344)
T ss_pred cceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEE
Confidence 44444 588888754443 5566554321 12447789999999887765422 123457899
Q ss_pred EEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC
Q psy3270 230 FDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS 309 (655)
Q Consensus 230 ~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~ 309 (655)
+|+|+||||++++. ++ .+ +...++....|..++.+.|.+++.... ++..+. .. + ++++ |..
T Consensus 190 IDIG~~TtD~~v~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~~---~----ie~~---l~~ 250 (344)
T PRK13917 190 IDFGSGTTDLDTIQ--NL-KR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--PY---M----LEKG---LEY 250 (344)
T ss_pred EEcCCCcEEEEEEe--Cc-EE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--HH---H----HHHH---HHc
Confidence 99999999999986 23 22 233344467899999999888875332 222221 11 1 2222 211
Q ss_pred CCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCC
Q psy3270 310 STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389 (655)
Q Consensus 310 ~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~ 389 (655)
. .+.+. .+.. +.+ ++++.++++++++++.+.+...+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 12221 1111 122 4567788999999998888888754 3478999999999987 88999999964
Q ss_pred CcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 390 KSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 390 ~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
+....||..|.|+|...+|..+.+
T Consensus 316 --~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 --VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred --eEEcCChHHHHHHHHHHHHHHHhc
Confidence 356679999999999999986654
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=124.75 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=137.4
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
-..+++|.|...+..+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++|+++.+. +|..
T Consensus 95 ~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~--~G~~ 165 (373)
T smart00268 95 EHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVV--DGYV 165 (373)
T ss_pred cCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEE--CCEE
Confidence 357899999999999999998886 5679999999999999999886 34679999999999999886 3412
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC---C--------------c
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS---T--------------E 312 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~---~--------------~ 312 (655)
+ ........+||.++|+.|.+++...- ...... .-...++.+|+.+..- . .
T Consensus 166 ~--~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (373)
T smart00268 166 L--PHAIKRIDIAGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSK 233 (373)
T ss_pred c--hhhheeccCcHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccc
Confidence 1 12222357999999999998875510 011110 1122355555543210 0 0
Q ss_pred eEEEEccccCCcceEEeecHHHH-HHHhhHH-----HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHH
Q psy3270 313 ASLEIDALHEGIDFYSKITRARF-EELCMDL-----FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQ 384 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~-e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~ 384 (655)
..... .+.++..+.+...|-.. |.++.|. ...+.+.|.+++..+..+ ..-.+.|+|+||+|++|++.++|.
T Consensus 234 ~~~~~-~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~ 312 (373)
T smart00268 234 LEKTY-ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLE 312 (373)
T ss_pred cceeE-ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHH
Confidence 00011 12233333222122111 1223331 235677778888765422 223467999999999999999999
Q ss_pred hhhCCC-------cccCCCCchhHHHhHHHHHHH
Q psy3270 385 DFFNGK-------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 385 ~~f~~~-------~v~~~~~p~~ava~GAa~~a~ 411 (655)
+.+... .+..+.++..++=.||+++|.
T Consensus 313 ~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 313 KELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 887211 223334566777778877764
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=111.89 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=128.5
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHc---------CCcceeecChHHHHHHHcccccc--cCCCceEEEEEeCCceeE
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIA---------GLNVLRIINEPTAAALAYGLDKN--LKGEKNVLIFDLGGGTFD 238 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~A---------Gl~~~~li~Ep~Aaal~~~~~~~--~~~~~~vlV~D~GggT~d 238 (655)
.+..+|+..|..+...++..+++..... -+..+.+++||.+|.+.+..... ......++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4667999999999988999998876532 33567899999999887755321 124567899999999999
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEc
Q psy3270 239 VSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318 (655)
Q Consensus 239 vsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~ 318 (655)
+.++. ++ .+ +...++....|-.++-+.|.+.+.+++ +.+...+...+ +.+ |..... +.+
T Consensus 181 ~~~~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i-------~~~---l~~g~~--~~~- 239 (320)
T TIGR03739 181 WLVAR--GM-RL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRI-------DLA---LRTGKQ--PRI- 239 (320)
T ss_pred eehcc--CC-EE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHH-------HHH---HHhCCc--eee-
Confidence 98774 33 33 344455566887777777777665544 33211111111 111 111110 011
Q ss_pred cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 319 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
.+.. +.|+ +.+ +..+..+++++..+.+.+. ...+++.|+|+||++. .+++.|++.|+...+....||
T Consensus 240 ---~gk~--~di~-~~~-~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 ---YQKP--VDIK-RCL-ELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred ---ccee--cCch-HHH-HHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 0111 1222 112 2333344444444444332 1245889999999998 468999999976555566799
Q ss_pred hhHHHhHHHHHH
Q psy3270 399 DEAVAYGAAVQA 410 (655)
Q Consensus 399 ~~ava~GAa~~a 410 (655)
..|.|+|-..+|
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-11 Score=117.37 Aligned_cols=54 Identities=85% Similarity=1.291 Sum_probs=49.0
Q ss_pred HHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 105 RQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 105 r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
|+++.+|..+|||+++++||||+|||++||++. ...+.+.+++|+|||+|+.+|
T Consensus 188 rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDK-k~gEknilVfDLGGGTFDVSl 241 (663)
T KOG0100|consen 188 RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK-KDGEKNILVFDLGGGTFDVSL 241 (663)
T ss_pred HhhhcccceeccceEEEeecCccHHHHHhcccc-cCCcceEEEEEcCCceEEEEE
Confidence 678999999999999999999999999999985 456789999999999999864
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=107.94 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=133.7
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..++++.|..++...|+.+.+.+ +..|++.+.++++|.+|+++++.. +-+|+|+|.+.|.++-+. +|
T Consensus 93 ~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVVD~G~~~t~v~pV~--dG- 162 (393)
T PF00022_consen 93 SDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVVDIGYSSTSVVPVV--DG- 162 (393)
T ss_dssp GGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEEEESSS-EEEEEEE--TT-
T ss_pred ccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------cccccccceeeeeeeeee--ec-
Confidence 3467999999999999999888765 577999999999999999988754 459999999999988764 44
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHh---hcccccc----ccHHHHHHHHHHHHHHHHhc--------------
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKR---KHKKDIL----ANTRAVRRLRTACERAKRTL-------------- 307 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~---~~~~~~~----~~~~~~~~l~~~~e~~K~~l-------------- 307 (655)
.. +........+||.++++.|.+.+.++-.. .+...-. ...-....-....+.+|+.+
T Consensus 163 ~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~ 241 (393)
T PF00022_consen 163 YV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQ 241 (393)
T ss_dssp EE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHH
T ss_pred cc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccc
Confidence 21 11112235699999999998888773100 0000000 00000001111223333322
Q ss_pred -CCCCceEEEEccccCCcceEEeecHHHHH---HHhhHHHH------------hhhhHHHHHHHHcCCCC--CCcceEEE
Q psy3270 308 -SSSTEASLEIDALHEGIDFYSKITRARFE---ELCMDLFR------------QTLAPVERALNDAKLDK--GSIHDVVL 369 (655)
Q Consensus 308 -s~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~~------------~i~~~i~~~l~~~~~~~--~~i~~ViL 369 (655)
+......+.+ .++. .+.+..+.|. -++.|... .+.+.|.+++..+..+. .-.+.|+|
T Consensus 242 ~~~~~~~~~~l---Pdg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl 316 (393)
T PF00022_consen 242 ASENPEKSYEL---PDGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVL 316 (393)
T ss_dssp HCSTTTEEEE----TTSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEE
T ss_pred cccccceeccc---cccc--ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEE
Confidence 1222233333 2343 3344443332 23333221 46677788887765332 22578999
Q ss_pred ecCccchHHHHHHHHhhhCC-------CcccCCC-CchhHHHhHHHHHHH
Q psy3270 370 VGGSIRIPKIQKMLQDFFNG-------KSLNLSI-NPDEAVAYGAAVQAA 411 (655)
Q Consensus 370 vGG~s~~p~v~~~l~~~f~~-------~~v~~~~-~p~~ava~GAa~~a~ 411 (655)
+||+|++|++.++|.+.+.. .++..+. +|..++=.||+++|.
T Consensus 317 ~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 317 TGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp ESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred ecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeec
Confidence 99999999999999888722 1233344 789999999999985
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-09 Score=119.49 Aligned_cols=71 Identities=73% Similarity=1.023 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCC
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYF 182 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~ 182 (655)
.||+++.+|+++|||+++++++||+|||+.|+++.. .+..+++||+|||+|+.+|.+... | ++.|++.-
T Consensus 134 ~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~~---g------~~ev~at~ 202 (579)
T COG0443 134 AQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIGD---G------VFEVLATG 202 (579)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEcC---C------EEEEeecC
Confidence 369999999999999999999999999999999877 788999999999999998776541 1 67777765
Q ss_pred CH
Q psy3270 183 ND 184 (655)
Q Consensus 183 ~~ 184 (655)
.+
T Consensus 203 gd 204 (579)
T COG0443 203 GD 204 (579)
T ss_pred CC
Confidence 43
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-08 Score=105.03 Aligned_cols=204 Identities=18% Similarity=0.164 Sum_probs=130.3
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHccccccc---CCCceEEEEEeCCceeEEEEEEEeC
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNL---KGEKNVLIFDLGGGTFDVSVLAIDE 246 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~---~~~~~vlV~D~GggT~dvsv~~~~~ 246 (655)
-..+++|.|..++..+|+.+.+.+ +..+.+-+.+..+|.++++++...... ....+-+|+|+|.|+|+++-+. +
T Consensus 102 ~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~ 179 (414)
T PTZ00280 102 EHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--D 179 (414)
T ss_pred CCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--C
Confidence 346899999999999999998876 455899999999999999887432211 0123569999999999998775 2
Q ss_pred CceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC---------------
Q psy3270 247 GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST--------------- 311 (655)
Q Consensus 247 ~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~--------------- 311 (655)
|..+ ........+||.++|+.|.+++.+.. ..+... ..+..++.+|+.+..-.
T Consensus 180 G~~l--~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 247 (414)
T PTZ00280 180 GYVI--GSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPK 247 (414)
T ss_pred CEEc--ccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcc
Confidence 4111 11112246999999999999875421 111110 11223566666653210
Q ss_pred --ceEEEEccccCCcceEEeecHHHHH---HHhhHHH------HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHH
Q psy3270 312 --EASLEIDALHEGIDFYSKITRARFE---ELCMDLF------RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPK 378 (655)
Q Consensus 312 --~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~ 378 (655)
...+..+...++....+.+..+.|. -++.|-+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|+
T Consensus 248 ~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~G 327 (414)
T PTZ00280 248 NHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKG 327 (414)
T ss_pred cccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcC
Confidence 0112222222233445677776664 2444522 14567777777766433 234577999999999999
Q ss_pred HHHHHHhhhC
Q psy3270 379 IQKMLQDFFN 388 (655)
Q Consensus 379 v~~~l~~~f~ 388 (655)
+.++|++.+.
T Consensus 328 f~eRL~~El~ 337 (414)
T PTZ00280 328 FDKRLQRDVR 337 (414)
T ss_pred HHHHHHHHHH
Confidence 9999998883
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-08 Score=106.04 Aligned_cols=147 Identities=35% Similarity=0.485 Sum_probs=102.6
Q ss_pred cccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHH
Q psy3270 135 LDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 214 (655)
Q Consensus 135 ~~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~ 214 (655)
+.+++.++.+...-.+.-+.+..+|+..++..+..++.++||+||+||++.||+++.+||+.|||++++|++|.+|+|++
T Consensus 101 i~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ 180 (727)
T KOG0103|consen 101 IKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALA 180 (727)
T ss_pred eeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhh
Confidence 33444444444444444456667899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEEEEeCCce---eEEEEEEEeCCceEEEEE---ecCCCCCCcchHH-----HHHHHHHHHHHHhhcc
Q psy3270 215 YGLDKNLKGEKNVLIFDLGGGT---FDVSVLAIDEGSLFQVKS---TAGDTHLGGEDFD-----NRLVTFFADEFKRKHK 283 (655)
Q Consensus 215 ~~~~~~~~~~~~vlV~D~GggT---~dvsv~~~~~~~~~~v~~---~~~~~~lGG~~~d-----~~l~~~~~~~~~~~~~ 283 (655)
||..++ |+-+.. ..+.++.++.. .+.+-. ..|....=+..+| +.+-+.+.+.|..+++
T Consensus 181 ygiyKt----------DLP~~~ekpr~v~fvD~GHS-~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk 249 (727)
T KOG0103|consen 181 YGIYKT----------DLPENEEKPRNVVFVDIGHS-SYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFK 249 (727)
T ss_pred cccccc----------cCCCcccCcceEEEEecccc-cceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhc
Confidence 999876 222222 23444444333 222221 2244445577788 4556667777777777
Q ss_pred ccccccHHH
Q psy3270 284 KDILANTRA 292 (655)
Q Consensus 284 ~~~~~~~~~ 292 (655)
.....+.+.
T Consensus 250 ~kykidv~s 258 (727)
T KOG0103|consen 250 TKYKIDVRS 258 (727)
T ss_pred cccccchhh
Confidence 655544433
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-08 Score=115.79 Aligned_cols=58 Identities=69% Similarity=1.111 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 102 DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 102 ~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
+.||+++.+||++|||+++++|+||+|||++|+++.. .+..+++||+|||+++.++.+
T Consensus 173 ~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 173 DAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred hHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEEEEEE
Confidence 4699999999999999999999999999999998643 467899999999999986543
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.3e-08 Score=100.25 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=99.3
Q ss_pred cceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHH
Q psy3270 200 NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK 279 (655)
Q Consensus 200 ~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~ 279 (655)
..+.+++||.||.+.+... ..+...++|+|+||+|+|++++. ++ .-.+....+...+|-..+...+.+.+.. .
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~--~~~~~~~lVVDIGG~T~Dv~~v~--~~-~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-~- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD--LDEDESVLVVDIGGRTTDVAVVR--GG-LPDISKCSGTPEIGVSDLYDAIAQALRS-A- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT--S-TTSEEEEEEE-SS-EEEEEEE--GG-G--EEEEEEETTSSTHHHHHHHHHHTT----
T ss_pred eeEEEEcccHHHHHHHHHh--hcccCcEEEEEcCCCeEEeeeec--CC-ccccchhccCCchhHHHHHHHHHHHHHH-h-
Confidence 4678899999999887655 33456799999999999999986 22 2223333444578888888888776644 1
Q ss_pred hhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCC
Q psy3270 280 RKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 359 (655)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~ 359 (655)
+... +... ++.+-.. ...... +....... -..+++.+.++..++++.+.|.+.+..
T Consensus 214 ---~~~~--s~~~-------~~~ii~~--~~~~~~--~~~~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~--- 269 (318)
T PF06406_consen 214 ---GIDT--SELQ-------IDDIIRN--RKDKGY--LRQVINDE-----DVIDDVSEVIEEAVEELINRILRELGD--- 269 (318)
T ss_dssp ---SBHH--HHHH-------HHHHHHT--TT-HHH--HHHHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ---cCCC--cHHH-------HHHHHHh--hhccce--ecccccch-----hhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 1110 0011 1111000 000000 00000000 123445555555566666655555543
Q ss_pred CCCCcceEEEecCccchHHHHHHHHhhhC--CCcccCCCCchhHHHhHHH
Q psy3270 360 DKGSIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAA 407 (655)
Q Consensus 360 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~ava~GAa 407 (655)
..+++.|+||||++.+ +.+.|++.|+ ...+...-||.+|.|+|-+
T Consensus 270 -~~~~~~I~~vGGGA~l--l~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 -FSDIDRIFFVGGGAIL--LKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-S-SEEEEESTTHHH--HHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred -hccCCeEEEECCcHHH--HHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 3467899999999975 7899999985 3466777899999999964
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.1e-08 Score=109.17 Aligned_cols=88 Identities=55% Similarity=0.837 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEE
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLI 147 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~ 147 (655)
.++..+.+.+..........-+-.+ |+||++.||+++.+||++|||+++++|+||+|||+.|+++.. .+..+++
T Consensus 132 ~iL~~lk~~ae~~lg~~v~~~VITV----Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV 205 (616)
T PRK05183 132 EILKALRQRAEETLGGELDGAVITV----PAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAV 205 (616)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEE----CCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEE
Confidence 4556666666665555555567777 999999999999999999999999999999999999998643 3678899
Q ss_pred EeccccchhhHHHH
Q psy3270 148 FDLGGGTFDVSMRE 161 (655)
Q Consensus 148 ~d~g~~~~~~~l~~ 161 (655)
+|+|||+++.++.+
T Consensus 206 ~DlGGGT~DvSv~~ 219 (616)
T PRK05183 206 YDLGGGTFDISILR 219 (616)
T ss_pred EECCCCeEEEEEEE
Confidence 99999999975543
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-08 Score=112.96 Aligned_cols=60 Identities=58% Similarity=0.894 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++++||++|||+++++++||+|||++|+++.. .+...+++|+|||+++.++.+
T Consensus 152 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 152 FNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEE
Confidence 899999999999999999999999999999999998753 345789999999999986544
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-08 Score=113.54 Aligned_cols=60 Identities=77% Similarity=1.161 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++++||++|||+++++|+||+|||++|+++.. .+..++++|+||++++.++.+
T Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 146 FNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEEEEEE
Confidence 889999999999999999999999999999999998653 467899999999999986544
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-08 Score=113.60 Aligned_cols=59 Identities=88% Similarity=1.235 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 102 DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 102 ~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
+.||+++.+||++|||+++++++||+|||+.|++......+..++++|+|+++++.++.
T Consensus 153 ~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (653)
T PTZ00009 153 DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLL 211 (653)
T ss_pred HHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEE
Confidence 57999999999999999999999999999999987665567889999999999997553
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-08 Score=112.17 Aligned_cols=61 Identities=69% Similarity=1.072 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 99 YFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 99 ~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
||++.||+++.+||++|||+++++++||+|||+.|+++.. .+..++++|+||++++.++.+
T Consensus 139 ~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 139 YFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEEEEEE
Confidence 6999999999999999999999999999999999998753 567899999999999986543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-08 Score=113.11 Aligned_cols=60 Identities=78% Similarity=1.166 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|++.||+++.+||++|||+++++++||+|||++|++... ..+...++||+|||+++.++.
T Consensus 144 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 144 FTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEEEEE
Confidence 889999999999999999999999999999999998653 345678999999999997543
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=99.04 Aligned_cols=216 Identities=15% Similarity=0.191 Sum_probs=135.9
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..++..+|+.+.+.+ +..|+..+.++.+|.+++++++. .+-+|+|+|.++|+++-+. +|.
T Consensus 100 ~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~--dG~ 170 (378)
T PTZ00004 100 EEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGY 170 (378)
T ss_pred ccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEE--CCE
Confidence 3456889999999999998887765 66799999999999999988753 3559999999999998765 331
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC---------------C--
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS---------------T-- 311 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~---------------~-- 311 (655)
.+ ........+||.++|+.|.+.+... +..+.. .. -...++.+|+.+..- .
T Consensus 171 ~l--~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~ 238 (378)
T PTZ00004 171 SL--PHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKY 238 (378)
T ss_pred Ee--ecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCcccc
Confidence 11 1222235799999999998887432 111111 00 111244455443210 0
Q ss_pred ceEEEEccccCCcceEEeecHHHHH---HHhhHH------HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHH
Q psy3270 312 EASLEIDALHEGIDFYSKITRARFE---ELCMDL------FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQ 380 (655)
Q Consensus 312 ~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~ 380 (655)
...+. +.+|.. +.+..+.|. -++.|- ...+.+.|.+++..+..+ ..-...|+|+||+|.+|++.
T Consensus 239 ~~~y~---lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 313 (378)
T PTZ00004 239 EESYE---LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLP 313 (378)
T ss_pred ceEEE---CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHH
Confidence 11122 233433 344554442 344543 224556677777766432 23357799999999999999
Q ss_pred HHHHhhhCCC-------cccCCCCchhHHHhHHHHHHH
Q psy3270 381 KMLQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 381 ~~l~~~f~~~-------~v~~~~~p~~ava~GAa~~a~ 411 (655)
++|...+... ++..+.++..++=+||+++|.
T Consensus 314 ~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 314 ERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9999887211 223344566777778877764
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-08 Score=112.16 Aligned_cols=60 Identities=75% Similarity=1.156 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++.+||++|||+++++++||+|||++|+... ..+...+++|+|||+++.++..
T Consensus 185 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 185 FNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK--NDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhcccc--CCCcEEEEEeCCCCeEEEEEEE
Confidence 89999999999999999999999999999999999864 3467899999999999986543
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.8e-07 Score=89.30 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=103.7
Q ss_pred ecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhcc
Q psy3270 204 IINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283 (655)
Q Consensus 204 li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~ 283 (655)
.++|.+|-+.....-.+ . .-.|+|+||..+-+.+++ +| ...-.........|+..|.+.+.+.+ +
T Consensus 74 ~~~ei~~~~~g~~~~~~--~--~~~vidiGgqd~k~i~~~--~g-~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~ 138 (248)
T TIGR00241 74 IVTEISCHGKGANYLAP--E--ARGVIDIGGQDSKVIKID--DG-KVDDFTMNDKCAAGTGRFLEVTARRL--------G 138 (248)
T ss_pred ceEEhhHHHHHHHHHCC--C--CCEEEEecCCeeEEEEEC--CC-cEeeeeecCcccccccHHHHHHHHHc--------C
Confidence 56787776655433222 1 225999999988887776 55 33333345556778888888887664 2
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcC----CCCceEEEEccc-cCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcC
Q psy3270 284 KDILANTRAVRRLRTACERAKRTLS----SSTEASLEIDAL-HEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAK 358 (655)
Q Consensus 284 ~~~~~~~~~~~~l~~~~e~~K~~ls----~~~~~~i~i~~~-~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 358 (655)
.++ .+++.+|..-. -+..+.+..+.- ... +....++ ++++..+++.+...+.+.+...+
T Consensus 139 ~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~~~~ 202 (248)
T TIGR00241 139 VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQRLK 202 (248)
T ss_pred CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC
Confidence 221 12333332211 111122221110 000 0001222 45666777777776666665443
Q ss_pred CCCCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 359 LDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 359 ~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
++ .|+|+||.+++|++.+.+++.+ +.++..+.+|..+.|+|||+
T Consensus 203 -----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 203 -----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred -----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 34 6999999999999999999999 78888888999999999997
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=98.35 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=136.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..+...+|+.+.+. .+..++.-+.+...|.+++++++. .+-+|+|+|.+.|.++-+.- |.
T Consensus 100 ~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~PV~d--G~ 170 (376)
T PTZ00281 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTVPIYE--GY 170 (376)
T ss_pred ccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEEEEEe--cc
Confidence 346788898999999999998885 466788999999999999988753 35699999999999875542 31
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC----------------c
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----------------E 312 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----------------~ 312 (655)
. +........+||.++++.|.+.+... +..+.. .. -+..++.+|+.+..-. .
T Consensus 171 ~--~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~ 238 (376)
T PTZ00281 171 A--LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALE 238 (376)
T ss_pred c--chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccc
Confidence 1 11222235799999999998877442 111111 00 0123555665542100 0
Q ss_pred eEEEEccccCCcceEEeecHHHH---HHHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHH
Q psy3270 313 ASLEIDALHEGIDFYSKITRARF---EELCMDLF-----RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
..+. +.++.. +.+..+.| |.++.|.+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|++.++
T Consensus 239 ~~y~---LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 313 (376)
T PTZ00281 239 KSYE---LPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADR 313 (376)
T ss_pred eeEE---CCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHH
Confidence 1111 233332 34554433 23344422 13556677777665432 2235679999999999999999
Q ss_pred HHhhhCCC-------cccCCCCchhHHHhHHHHHHH
Q psy3270 383 LQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 383 l~~~f~~~-------~v~~~~~p~~ava~GAa~~a~ 411 (655)
|+..+... ++..+.++..++=+|++++|+
T Consensus 314 L~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 314 MNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 98887211 233344667788888888875
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-08 Score=111.29 Aligned_cols=61 Identities=80% Similarity=1.263 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 99 YFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 99 ~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
+|++.||+++.+||++|||+++++++||+|||++|++... .+..+++||+||++++.++.+
T Consensus 143 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 143 YFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEEEE
Confidence 6999999999999999999999999999999999998763 568899999999999976543
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-06 Score=83.08 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccc-ccc-C--CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCC
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNL-K--GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTH 260 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~-~~~-~--~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~ 260 (655)
+......+|.+.|||....+=-|..|.--+|... .+. . ...+++|+|+|+..+.+.++.-+.. + ...+..
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~-----l-y~r~~~ 222 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKI-----L-YTREVP 222 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCee-----e-eEeecc
Confidence 3455667899999999988888888876655421 111 1 1224789999999999999873322 1 122367
Q ss_pred CCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhh
Q psy3270 261 LGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCM 340 (655)
Q Consensus 261 lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~ 340 (655)
+||+.++..+.+.+ +.+. ..++.+|....... +--.+...
T Consensus 223 ~g~~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~ 262 (354)
T COG4972 223 VGTDQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLR 262 (354)
T ss_pred CcHHHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHH
Confidence 99999999886543 2221 23666775543222 11235566
Q ss_pred HHHHhhhhHHHHHHHHc--CCCCCCcceEEEecCccchHHHHHHHHhhh
Q psy3270 341 DLFRQTLAPVERALNDA--KLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 341 ~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
++++.+.+.|.+.|+-. .-...+|+.|+|.||++.+-++.+.+.+.+
T Consensus 263 ~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 263 PFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 67777777777776642 223457999999999999999999999998
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6e-08 Score=110.63 Aligned_cols=59 Identities=75% Similarity=1.160 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|++.||+++.+||++|||+++++++||+|||++|+.+.. .+...++||+||++++.++.
T Consensus 183 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~DvSi~ 241 (673)
T PLN03184 183 FNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDVSVL 241 (673)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEE
Confidence 889999999999999999999999999999999998653 45789999999999997654
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-08 Score=109.84 Aligned_cols=61 Identities=80% Similarity=1.207 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++.+||++|||+++++++||+|||++|++... ..+..++++|+||++++.++..
T Consensus 141 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 141 FNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEE
Confidence 889999999999999999999999999999999998653 4568899999999999986543
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-08 Score=103.15 Aligned_cols=57 Identities=77% Similarity=1.127 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
.||+++.+|.+++||++++++|||+||++.||++... .....++|+|+++|+.++.+
T Consensus 174 sqRqaTkdag~iagl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtfdisile 230 (640)
T KOG0102|consen 174 SQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTFDISILE 230 (640)
T ss_pred HHHHHhHhhhhhccceeeccCCccchhHHhhcccccC--CCceEEEEcCCceeeeeeeh
Confidence 3899999999999999999999999999999998765 67789999999999976543
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=93.20 Aligned_cols=216 Identities=16% Similarity=0.193 Sum_probs=135.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..++..+|+.+.+.. +.-+.+.+.+.+.|.+++++++. .+-+|+|+|.|.++++-+. +|.
T Consensus 99 ~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV~--dG~ 169 (375)
T PTZ00452 99 EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPVF--EGH 169 (375)
T ss_pred ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEEE--CCE
Confidence 3467899999999999999988765 56788889999999999988753 3559999999999998765 341
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC----------------Cc
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----------------TE 312 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----------------~~ 312 (655)
.+ ........+||.++++.|.+.+.+. +..+... .. +..++.+|+.+..- ..
T Consensus 170 ~l--~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 237 (375)
T PTZ00452 170 QI--PQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQD 237 (375)
T ss_pred Ee--ccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcC
Confidence 11 1222235699999999888877431 1111110 00 11234444443211 01
Q ss_pred eEEEEccccCCcceEEeecHHHHH---HHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHH
Q psy3270 313 ASLEIDALHEGIDFYSKITRARFE---ELCMDLF-----RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
..+. +.+|. .+.+..+.|. -++.|.+ ..+.+.|.+++..+... ..-...|+|+||+|.+|++.++
T Consensus 238 ~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 312 (375)
T PTZ00452 238 SPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANR 312 (375)
T ss_pred ceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHH
Confidence 1122 23343 3455555552 2333422 23456677777765432 3345789999999999999999
Q ss_pred HHhhhCC-----Cc--ccCCCCchhHHHhHHHHHHH
Q psy3270 383 LQDFFNG-----KS--LNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 383 l~~~f~~-----~~--v~~~~~p~~ava~GAa~~a~ 411 (655)
|++.+.. .+ +..+.++..++=+|++++|.
T Consensus 313 L~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 313 LSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 9888721 12 22334555677778888774
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.9e-07 Score=94.07 Aligned_cols=218 Identities=15% Similarity=0.164 Sum_probs=135.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|=|..++..+|+.+.+.+ +.-|++-+.+.+.|.+|+++++. .+-+|+|+|.+.|.++-+. +|.
T Consensus 105 ~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tglVVD~G~~~t~v~PV~--~G~ 175 (380)
T PTZ00466 105 EEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGTVLDCGDGVCHCVSIY--EGY 175 (380)
T ss_pred ccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEEEEeCCCCceEEEEEE--CCE
Confidence 3566888999999999999987764 66788889999999999988753 3569999999999987664 341
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC---C----------CceEE
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS---S----------TEASL 315 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~---~----------~~~~i 315 (655)
.+ ........+||.++++.|.+.+.+. .+..+.. .-+..++.+|+.+.. + .....
T Consensus 176 ~~--~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~-------~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 243 (380)
T PTZ00466 176 SI--TNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS-------AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTL 243 (380)
T ss_pred Ee--ecceeEecCchhHHHHHHHHHHHhc---CCCCCcH-------HHHHHHHHHHHhCeEecCChHHHHhhccccccce
Confidence 21 1222235799999999998877431 1111111 112224455554421 0 00001
Q ss_pred EEccccCCcceEEeecHHHH---HHHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHHh
Q psy3270 316 EIDALHEGIDFYSKITRARF---EELCMDLF-----RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
.. .+.+|.. +.+..+.| |-++.|-+ ..+.+.|.+.+..+..+ ..-...|+|+||+|.+|++.++|+.
T Consensus 244 ~y-~LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 244 PY-ILPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred eE-ECCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 11 1233332 34555554 23333321 13456667777665433 2345789999999999999999998
Q ss_pred hhCCC-----c--ccCCCCchhHHHhHHHHHHH
Q psy3270 386 FFNGK-----S--LNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 386 ~f~~~-----~--v~~~~~p~~ava~GAa~~a~ 411 (655)
.+... + +..+.++..++=+|++++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 87221 1 23334566777788888874
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.4e-07 Score=94.91 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEE
Q psy3270 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIF 148 (655)
Q Consensus 69 v~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~ 148 (655)
.+..+|+++...+.... ..-..+|+++|++|++.+|+++.+|++.+|++.+.++++|+||+++++.+. ..+.+.+++
T Consensus 77 ~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lvv 153 (334)
T PRK13927 77 VTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPV--TEPTGSMVV 153 (334)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcc--cCCCeEEEE
Confidence 34556666655443332 122489999999999999999999999999999999999999999998854 345678999
Q ss_pred eccccchhhHH
Q psy3270 149 DLGGGTFDVSM 159 (655)
Q Consensus 149 d~g~~~~~~~l 159 (655)
|+|+++++..+
T Consensus 154 DiGggttdvs~ 164 (334)
T PRK13927 154 DIGGGTTEVAV 164 (334)
T ss_pred EeCCCeEEEEE
Confidence 99999999754
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.6e-08 Score=108.48 Aligned_cols=60 Identities=80% Similarity=1.204 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++.+||++|||+++++++||+|||++|+.+.. .+.+.+++|+|||+++.++.+
T Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 146 FNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEEEEEE
Confidence 789999999999999999999999999999999998643 457899999999999986543
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-07 Score=102.82 Aligned_cols=58 Identities=84% Similarity=1.174 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
.||+++.+|+.+|||+++++|+||+||++.|+++.....+.+++++|+||+++++++.
T Consensus 157 ~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l 214 (620)
T KOG0101|consen 157 SQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVL 214 (620)
T ss_pred HHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeE
Confidence 4999999999999999999999999999999999888888899999999999998544
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-07 Score=98.57 Aligned_cols=82 Identities=37% Similarity=0.581 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCcee
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTF 237 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~ 237 (655)
..+..|+.+...+++++|||||.+|++.+|+++.+|+++||++++.||++-+|+|+.|+..+. . |++++..
T Consensus 145 ~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rR--k-------~i~~~~q 215 (902)
T KOG0104|consen 145 YAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRR--K-------EINETPQ 215 (902)
T ss_pred HHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcc--c-------cCCCCce
Confidence 445678889999999999999999999999999999999999999999999999999998766 1 5788999
Q ss_pred EEEEEEEeCCc
Q psy3270 238 DVSVLAIDEGS 248 (655)
Q Consensus 238 dvsv~~~~~~~ 248 (655)
-+-+|.++.++
T Consensus 216 ~~i~YDMGs~s 226 (902)
T KOG0104|consen 216 HYIFYDMGSGS 226 (902)
T ss_pred EEEEEecCCCc
Confidence 99999887764
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=91.27 Aligned_cols=91 Identities=29% Similarity=0.373 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEE
Q psy3270 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVL 146 (655)
Q Consensus 67 ~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~ 146 (655)
-+.+..+|+++++.+..........+|+|+|++|+..+|+++.++++.+|++.+.+++||+||+++++.... .+.+.+
T Consensus 78 ~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~l 155 (335)
T PRK13930 78 FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNM 155 (335)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceE
Confidence 355788888888766554455578999999999999999999999999999999999999999999987532 345679
Q ss_pred EEeccccchhhHH
Q psy3270 147 IFDLGGGTFDVSM 159 (655)
Q Consensus 147 ~~d~g~~~~~~~l 159 (655)
++|+|+++++..+
T Consensus 156 VvDiG~gttdvs~ 168 (335)
T PRK13930 156 VVDIGGGTTEVAV 168 (335)
T ss_pred EEEeCCCeEEEEE
Confidence 9999999998754
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-07 Score=105.95 Aligned_cols=88 Identities=52% Similarity=0.753 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEE
Q psy3270 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVL 146 (655)
Q Consensus 67 ~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~ 146 (655)
..++..+...+..........-+-. ||++|++.||+++++||++|||+++++|+||+|||+.|++.... .+..++
T Consensus 117 ~~~l~~l~~~a~~~~~~~~~~~vit----VPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vl 191 (602)
T PF00012_consen 117 AMILKYLKEMAEKYLGEKVTDVVIT----VPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD-KGKTVL 191 (602)
T ss_dssp HHHHHHHHHHHHHHHTSBEEEEEEE----E-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEE
T ss_pred ccchhhhcccchhhcccccccceee----echhhhhhhhhcccccccccccccceeecccccccccccccccc-ccccee
Confidence 4456666666665555444333334 59999999999999999999999999999999999999887655 678999
Q ss_pred EEeccccchhhHH
Q psy3270 147 IFDLGGGTFDVSM 159 (655)
Q Consensus 147 ~~d~g~~~~~~~l 159 (655)
++|+||++++.++
T Consensus 192 v~D~Gggt~dvs~ 204 (602)
T PF00012_consen 192 VVDFGGGTFDVSV 204 (602)
T ss_dssp EEEEESSEEEEEE
T ss_pred ccccccceEeeee
Confidence 9999999999754
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-05 Score=86.32 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=63.2
Q ss_pred ceEEeecHHHHHHHhh---HHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcc---------
Q psy3270 325 DFYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL--------- 392 (655)
Q Consensus 325 ~~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v--------- 392 (655)
+..+.|+...+...+. -.+..++..+-+++...+ .|-++|+|--||+|.||..+.+..+ .++
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~Y 803 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHGY 803 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCCe
Confidence 4556889999988774 566667777777776654 4669999999999999999999873 111
Q ss_pred -----------cCCCCchhHHHhHHHHHHHHHc
Q psy3270 393 -----------NLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 393 -----------~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..--||-..||.||.+++....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 1234899999999998875544
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=83.87 Aligned_cols=93 Identities=30% Similarity=0.394 Sum_probs=78.8
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhC-CCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLG-GKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~-~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
.+.--+++..+|+++++.+....+ .....++++||..-++-+|+|+.+|++.||...+.+++||.|||+++++... .
T Consensus 74 VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~--e 151 (342)
T COG1077 74 VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM--E 151 (342)
T ss_pred EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc--C
Confidence 455566788889998887764444 3455789999999999999999999999999999999999999999998754 3
Q ss_pred CeeEEEEeccccchhh
Q psy3270 142 EKNVLIFDLGGGTFDV 157 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~ 157 (655)
+.+.+++|+|+|+++.
T Consensus 152 p~G~mvvDIGgGTTev 167 (342)
T COG1077 152 PTGSMVVDIGGGTTEV 167 (342)
T ss_pred CCCCEEEEeCCCceeE
Confidence 4589999999999985
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=74.63 Aligned_cols=190 Identities=22% Similarity=0.197 Sum_probs=101.0
Q ss_pred HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHH
Q psy3270 195 SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274 (655)
Q Consensus 195 ~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~ 274 (655)
+..|.++..-=.|+.+|.+....... .+....++|+|||+||.|++.-+ + .+...--. -.|+.++..|...
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG--t~~PlaIlDmG~GSTDAsii~~~-g-~v~~iHlA----GAG~mVTmlI~sE- 176 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG--TDKPLAILDMGGGSTDASIINRD-G-EVTAIHLA----GAGNMVTMLINSE- 176 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TT-S--EEEEEEE-----SHHHHHHHHHHH-
T ss_pred HHHCCceEEccccHHHHHhcccCCCC--CCCCeEEEecCCCcccHHHhCCC-C-cEEEEEec----CCchhhHHHHHHh-
Confidence 45577777777899999998876654 56779999999999999999743 3 23222211 2466666555332
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC-----------CCceEEEEcccc-----------CC--cceEEee
Q psy3270 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-----------STEASLEIDALH-----------EG--IDFYSKI 330 (655)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~-----------~~~~~i~i~~~~-----------~~--~~~~~~i 330 (655)
.+.+ . +.-||.+|+-=-. +....+.-+.+. ++ .++...+
T Consensus 177 -------LGl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 177 -------LGLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp -------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred -------hCCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 2221 1 1237777753110 001111000000 00 0111123
Q ss_pred cHHHHHHHhhHHHHhh-hhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHHhhhCCC-------cccCCCCchh
Q psy3270 331 TRARFEELCMDLFRQT-LAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPDE 400 (655)
Q Consensus 331 tr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~p~~ 400 (655)
+-+++..+=+..=+++ ..-..++|+....+ ..+|+.|+|||||+.=--|-+++.+.+..- .++-.--|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3333333322222222 22344555554322 347899999999998888888888887332 4555668999
Q ss_pred HHHhHHHHHH
Q psy3270 401 AVAYGAAVQA 410 (655)
Q Consensus 401 ava~GAa~~a 410 (655)
|||.|.++.-
T Consensus 320 AVATGLvlsy 329 (332)
T PF08841_consen 320 AVATGLVLSY 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998753
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-06 Score=83.62 Aligned_cols=93 Identities=32% Similarity=0.377 Sum_probs=69.7
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
+.--+++..+|+++.+.+.......-..++|+||...|+.+|+++.+++..+|...+.+++||.|||+++|++. ..+.
T Consensus 68 I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i--~~~~ 145 (326)
T PF06723_consen 68 IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDI--FEPR 145 (326)
T ss_dssp ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--T--TSSS
T ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCC--CCCC
Confidence 44456788888888887755433456789999999999999999999999999999999999999999999985 5678
Q ss_pred eEEEEeccccchhhH
Q psy3270 144 NVLIFDLGGGTFDVS 158 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~ 158 (655)
+.+++|+|+++++..
T Consensus 146 g~miVDIG~GtTdia 160 (326)
T PF06723_consen 146 GSMIVDIGGGTTDIA 160 (326)
T ss_dssp -EEEEEE-SS-EEEE
T ss_pred ceEEEEECCCeEEEE
Confidence 999999999999964
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00031 Score=70.70 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=50.8
Q ss_pred HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc-CCCCchhHHHhHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN-LSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~ava~GAa~~a~~ 412 (655)
++.-+...+.+.+...++..++. +.|+|+||.++.|.+++.+++.+ +.++. .+.+|..+-|+|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 33444444444444444443322 34999999999999999999999 56665 5778999999999999854
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.4e-06 Score=85.67 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=82.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCc--eEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 66 PEEISSMVLTKMREIAEVYLGGKVS--EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 66 ~~ev~a~~l~~l~~~ae~~~~~~i~--~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
.-++++++|++++..|+.+++..+. .+|||+|++|++.||+++.+|++.||++.+.+++||+|||++++++. ..+.
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~--~~~~ 150 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPV--DEPV 150 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCc--CCCc
Confidence 3378999999999999988887664 89999999999999999999999999999999999999999998764 3457
Q ss_pred eEEEEeccccchhhHH
Q psy3270 144 NVLIFDLGGGTFDVSM 159 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~l 159 (655)
+.+++|+|+++++..+
T Consensus 151 ~~lvvDiG~gtt~v~v 166 (335)
T PRK13929 151 ANVVVDIGGGTTEVAI 166 (335)
T ss_pred eEEEEEeCCCeEEEEE
Confidence 8899999999998754
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=74.23 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=73.7
Q ss_pred cceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
-.-++||-|+.=+...|+.+.+. .+...++...|+.+|+++|++.|. .+.||+|+|++++.++-+. +| .
T Consensus 106 ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr-------stalVvDiGa~~~svsPV~--DG-~ 175 (426)
T KOG0679|consen 106 EHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR-------STALVVDIGATHTSVSPVH--DG-Y 175 (426)
T ss_pred ccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC-------CceEEEEecCCCceeeeee--cc-e
Confidence 45689999997778888877765 467788899999999999998753 4569999999999998765 34 2
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADE 277 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~ 277 (655)
.--.+.. ..++||+.++..+.+.|...
T Consensus 176 Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 176 VLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 2222222 25799999999999888664
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=78.88 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=74.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..+....|..+.+. .+...+..+.+..++.++..+.+.. ..+.+|+|+|.+.++++=+-- |
T Consensus 105 ~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~-----~~~g~ViD~G~~~t~v~PV~D--G- 176 (444)
T COG5277 105 EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS-----DETGLVIDSGDSVTHVIPVVD--G- 176 (444)
T ss_pred cCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC-----CCceEEEEcCCCceeeEeeec--c-
Confidence 345799999999999988887765 5677888888888888888776643 247899999999999986642 2
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADE 277 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~ 277 (655)
+.+........+||++++..|.+.+...
T Consensus 177 -~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 -IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred -ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 1112222235699999999998887663
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00062 Score=69.59 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCcc----------------------eeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEE
Q psy3270 184 DSQRQATKDAGSIAGLNV----------------------LRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSV 241 (655)
Q Consensus 184 ~~~r~~~~~a~~~AGl~~----------------------~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv 241 (655)
+..+++++++.+.+|... -..++|-+|-+.+...-.+ +.. .|+|+||- |.-+
T Consensus 170 p~~~~~l~~~le~l~~~~~~I~~~~~TGYGR~~v~~~~~aD~~~~Ei~ah~kgA~~f~p---~~d-tIiDIGGQ--D~K~ 243 (396)
T COG1924 170 PIAEKALKEALEELGEKLEEILGLGVTGYGRNLVGAALGADKVVVEISAHAKGARYFAP---DVD-TVIDIGGQ--DSKV 243 (396)
T ss_pred hhHHHHHHHHHHHcccChheeeeeeeecccHHHhhhhhcCCcceeeeehhHHHHHHhCC---CCc-EEEEecCc--ceeE
Confidence 335677777777666531 2234566665444322211 111 89999996 6667
Q ss_pred EEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcccc
Q psy3270 242 LAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALH 321 (655)
Q Consensus 242 ~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~ 321 (655)
+++.+| ...-..-..-+.-|.-.|-+.+++.| +.++ ..+-+.+++.+..-.-+..+.+..++-.
T Consensus 244 i~i~dG-~v~df~mN~~CAAGtGrFLE~~A~~L--------gv~v-------~E~~~~A~~~~~~v~i~S~CaVF~eSev 307 (396)
T COG1924 244 IKLEDG-KVDDFTMNDKCAAGTGRFLEVIARRL--------GVDV-------EELGKLALKATPPVKINSRCAVFAESEV 307 (396)
T ss_pred EEEeCC-eeeeeEeccccccccchHHHHHHHHh--------CCCH-------HHHHHHHhcCCCCcccCCeeEEEehHHH
Confidence 777777 44433333333334333333333322 2222 2222334444432222233333222100
Q ss_pred CCcceEEeecHHHHHHHhhHHHHhhhhHHHH-HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 322 EGIDFYSKITRARFEELCMDLFRQTLAPVER-ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 322 ~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
.+..=.-...|+++..+...+.+.+.. +++...... -|+|+||.+....+.+.+++.+ +.++.+|.+|..
T Consensus 308 ----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql 378 (396)
T COG1924 308 ----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQL 378 (396)
T ss_pred ----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccch
Confidence 000000012355666666666555544 555444332 2999999999999999999999 789999999999
Q ss_pred HHHhHHHHHHHH
Q psy3270 401 AVAYGAAVQAAI 412 (655)
Q Consensus 401 ava~GAa~~a~~ 412 (655)
.-|.|||++|..
T Consensus 379 ~GAiGAAL~a~~ 390 (396)
T COG1924 379 MGAIGAALIAKE 390 (396)
T ss_pred hhHHHHHHHHhh
Confidence 999999999854
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00054 Score=68.04 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=49.3
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc----ccCCCCchhHHHhHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS----LNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~----v~~~~~p~~ava~GAa~~a 410 (655)
+++.-+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.+++.+++.. +..+.+|+.+-|+|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344444445555444445543311 1359999999999999999999985433 4556688999999999864
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=72.31 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=96.1
Q ss_pred eecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeC-CceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhh
Q psy3270 203 RIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDE-GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRK 281 (655)
Q Consensus 203 ~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~ 281 (655)
.+++|.+|-|....... +..-.|+|+||-.+ -++++++ | .+.-......+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~----P~vrTIIDIGGQDs--K~I~ld~~G-~V~dF~MNDKCAAGTGrFLE~mA~~L------- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY----PGTRTVLDIGGQDT--KGIQIDDHG-IVENFQMNDRCAAGCGRYLGYIADEM------- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC----CCCCEEEEeCCCce--EEEEEcCCC-cEeeeeecCcccccchHHHHHHHHHc-------
Confidence 45689998777654432 22337999999754 4566653 5 33222222223334333333333222
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCC
Q psy3270 282 HKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK 361 (655)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~ 361 (655)
+.++ ..|-..+.+.+....-+..+.+..++-.-. -..--+++ ++++.-+...+...+...+...+
T Consensus 315 -gi~l-------eEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~--- 379 (432)
T TIGR02259 315 -NMGL-------HELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG--- 379 (432)
T ss_pred -CCCH-------HHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---
Confidence 2221 112222333333333333343333221000 00112333 33444444555554455554431
Q ss_pred CCcceEEEecCccchHHHHHHHHhhhC----CCcccCCCCchhHHHhHHHHHH
Q psy3270 362 GSIHDVVLVGGSIRIPKIQKMLQDFFN----GKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~v~~~~~p~~ava~GAa~~a 410 (655)
..-+.|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112459999999999999999999994 4567788999999999999875
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00029 Score=73.72 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=52.1
Q ss_pred HHhhHHHHhhhhHHHH-HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVER-ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
+++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.+ +.++..+.+|..+-|+|||++|.
T Consensus 332 DIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 332 DVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 3444444444444442 34433322 34999999999999999999999 67888899999999999999984
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.3e-05 Score=81.33 Aligned_cols=96 Identities=25% Similarity=0.345 Sum_probs=79.5
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGE 142 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~ 142 (655)
.+...+++..+|+++++.+..........+|||||++|+..||+++.+|++.||++.+.+++||+||+++|+++. ..+
T Consensus 69 ~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~--~~~ 146 (336)
T PRK13928 69 VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDI--SQP 146 (336)
T ss_pred eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcc--cCC
Confidence 345556788888998866543333345579999999999999999999999999999999999999999999854 345
Q ss_pred eeEEEEeccccchhhHHH
Q psy3270 143 KNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 143 ~~~~~~d~g~~~~~~~l~ 160 (655)
.+.+++|+|+++++..+.
T Consensus 147 ~~~lVvDiGggttdvsvv 164 (336)
T PRK13928 147 SGNMVVDIGGGTTDIAVL 164 (336)
T ss_pred CeEEEEEeCCCeEEEEEE
Confidence 678999999999997543
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.4e-05 Score=74.80 Aligned_cols=49 Identities=35% Similarity=0.568 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 104 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 104 ~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
||+++.++++.|||++..+++||.|+++.|+.. ..+++|+|+++++..+
T Consensus 76 ~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-------~~~vvDiGggtt~i~i 124 (239)
T TIGR02529 76 DPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-------NGAVVDVGGGTTGISI 124 (239)
T ss_pred cHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------CcEEEEeCCCcEEEEE
Confidence 789999999999999999999999999988754 2589999999988643
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=76.15 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEE
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLI 147 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~ 147 (655)
+.+..+++++........+..-..+|+|+|++|++.+|+++.++++.+|++.+.+++||+||+++|+... ..+...++
T Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lV 154 (333)
T TIGR00904 77 EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPV--EEPTGSMV 154 (333)
T ss_pred HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcc--cCCceEEE
Confidence 3345555665554433223333489999999999999999999999999999999999999999998754 34567899
Q ss_pred EeccccchhhHH
Q psy3270 148 FDLGGGTFDVSM 159 (655)
Q Consensus 148 ~d~g~~~~~~~l 159 (655)
+|+|+++++..+
T Consensus 155 vDiG~gttdvs~ 166 (333)
T TIGR00904 155 VDIGGGTTEVAV 166 (333)
T ss_pred EEcCCCeEEEEE
Confidence 999999998754
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0049 Score=62.52 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=42.1
Q ss_pred cceEEEec-CccchHHHHHHHHhhhC--CCcccCCCCchhHHHhHHHHHHH
Q psy3270 364 IHDVVLVG-GSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 364 i~~ViLvG-G~s~~p~v~~~l~~~f~--~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 46799999 79999999999999873 56778888999999999999874
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=70.30 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHH------------cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 185 SQRQATKDAGSI------------AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 185 ~~r~~~~~a~~~------------AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
..++++++|++. ||+++-.++. |.|++.+.... +++..++++|+|||||++++++ +|...
T Consensus 98 ~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~iaVf~--~G~l~-- 169 (475)
T PRK10719 98 ARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTANYALFD--AGKVI-- 169 (475)
T ss_pred hHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceEEEEEE--CCEEE--
Confidence 345666777775 7777777766 99999888743 3788999999999999999997 34122
Q ss_pred EEecCCCCCCcchHHHH
Q psy3270 253 KSTAGDTHLGGEDFDNR 269 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~ 269 (655)
..+..++||+.++.+
T Consensus 170 --~T~~l~vGG~~IT~D 184 (475)
T PRK10719 170 --DTACLNVGGRLIETD 184 (475)
T ss_pred --EEEEEecccceEEEC
Confidence 222367999998754
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00027 Score=76.80 Aligned_cols=57 Identities=37% Similarity=0.492 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
..++.+.+||+.|||+++++++||+|||+.|+.. ...+...+++|+||++++.++..
T Consensus 171 ~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~--~~~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 171 QAEGILERAAKRAGFKDVEFQFEPVAAGLDFEAT--LTEEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccc--cCCCCeEEEEEeCCCeEEEEEEE
Confidence 4466788999999999999999999999999874 34567899999999999875543
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=65.90 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=69.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
.+|+-||..|.-.+.+.+... ....||....++.|+.||.+..|+. ...|+|+|+-+|.++.++- | + .
T Consensus 229 ~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVEd--G-v-s 297 (618)
T KOG0797|consen 229 HAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVED--G-V-S 297 (618)
T ss_pred eEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEeec--C-c-c
Confidence 568888988887766555554 5778999999999999999887765 3489999999999988763 3 1 1
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
+..+.--...||.||++.|+-++.+
T Consensus 298 ~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 298 LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred ccCceEEeccCCchHHHHHHHHHHh
Confidence 1111112468999999999877654
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00021 Score=66.11 Aligned_cols=81 Identities=28% Similarity=0.461 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEe
Q psy3270 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFD 149 (655)
Q Consensus 70 ~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d 149 (655)
+-.+.|++++.+|+.+|.+++.+.-++|+.--+...+...+..+-||++++.+++||+||+.-.+++ ...++|
T Consensus 74 aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-------dg~VVD 146 (277)
T COG4820 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-------DGGVVD 146 (277)
T ss_pred HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-------CCcEEE
Confidence 3457899999999999999999999999998777888889999999999999999999999877775 346789
Q ss_pred ccccchhh
Q psy3270 150 LGGGTFDV 157 (655)
Q Consensus 150 ~g~~~~~~ 157 (655)
+|||++-.
T Consensus 147 iGGGTTGI 154 (277)
T COG4820 147 IGGGTTGI 154 (277)
T ss_pred eCCCccee
Confidence 99998875
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.18 Score=55.27 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=51.1
Q ss_pred EeecHHHHHHHhhHH---HHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcc------------
Q psy3270 328 SKITRARFEELCMDL---FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL------------ 392 (655)
Q Consensus 328 ~~itr~~~e~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v------------ 392 (655)
+.|.-+++++.+-.- +...+..+-+++.- -+-|-++|+|--||+|+|+..+....+ .++
T Consensus 745 l~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yrvg 818 (1014)
T COG4457 745 LAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYRVG 818 (1014)
T ss_pred eeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEeccceecc
Confidence 455556665544322 22333333333332 335679999999999999999988762 111
Q ss_pred --------cCCCCchhHHHhHHHHHHHHHc
Q psy3270 393 --------NLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 393 --------~~~~~p~~ava~GAa~~a~~l~ 414 (655)
.+--||...+|.||-+++..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 1223899999999988886553
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0022 Score=61.87 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=55.8
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHcCCC-CCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 335 FEELCMDLFRQTLAPVERALNDAKLD-KGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 335 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
..++++.+++.+.-.+...++...-. ...++.|+++||.++.|.+.+++.+.| +.++... +..++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 45555556666655555555443111 234789999999999999999999999 6777665 4488999999999864
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.04 Score=53.30 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=112.6
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
....+.+|=|.--....|+.|.+. .+.-|+.-+.+.-...-+..+-++. .=+|+|-|.|.|.+.-+- .+-
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-------tGvVvDSGDGVTHi~PVy--e~~ 170 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-------TGVVVDSGDGVTHIVPVY--EGF 170 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-------ceEEEecCCCeeEEeeee--cce
Confidence 345788999998888889988876 4677887776655444444333332 238999999988876443 121
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcC-------------CCCceEE
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLS-------------SSTEASL 315 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls-------------~~~~~~i 315 (655)
.+.-+ .+...+.|+|+++-+.+.+..+- |..+-.. ... ....+|+.|. ..+..-+
T Consensus 171 ~l~HL--trRldvAGRdiTryLi~LLl~rG---YafN~tA---DFE----TVR~iKEKLCYisYd~e~e~kLalETTvLv 238 (389)
T KOG0677|consen 171 VLPHL--TRRLDVAGRDITRYLIKLLLRRG---YAFNHTA---DFE----TVREIKEKLCYISYDLELEQKLALETTVLV 238 (389)
T ss_pred ehhhh--hhhccccchhHHHHHHHHHHhhc---ccccccc---chH----HHHHHHhhheeEeechhhhhHhhhhheeee
Confidence 11111 12345889999999988875431 1111111 111 1223343332 1111111
Q ss_pred EEccccCCcceEEeecHHHHH---HHhhHHH-----HhhhhHHHHHHHHcCCCC--CCcceEEEecCccchHHHHHHHHh
Q psy3270 316 EIDALHEGIDFYSKITRARFE---ELCMDLF-----RQTLAPVERALNDAKLDK--GSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
.--.+.+|.- +.+--+.|+ .+++|.+ ..+.+++..+++.+.++. .--.+|+|.||++.-|++-.+|++
T Consensus 239 ~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEk 316 (389)
T KOG0677|consen 239 ESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEK 316 (389)
T ss_pred eeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHH
Confidence 1112334432 244444454 5666643 234566677777766542 234689999999999999888877
Q ss_pred hh
Q psy3270 386 FF 387 (655)
Q Consensus 386 ~f 387 (655)
.+
T Consensus 317 El 318 (389)
T KOG0677|consen 317 EL 318 (389)
T ss_pred HH
Confidence 65
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0038 Score=55.00 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCC--cchHH--HHHHHHH
Q psy3270 227 VLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLG--GEDFD--NRLVTFF 274 (655)
Q Consensus 227 vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lG--G~~~d--~~l~~~~ 274 (655)
++++|+|++++.+.+++......+.++....-...| |.+++ +.+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 579999999999999987443356665522111111 77777 6665544
|
|
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.021 Score=59.66 Aligned_cols=92 Identities=18% Similarity=0.297 Sum_probs=57.2
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE-EEEEeCCc
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS-VLAIDEGS 248 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs-v~~~~~~~ 248 (655)
..-+++|=|..|....|+.+.+.. +.-+.+-+.+ +..|.+ |... -.+-+|+|+|.|-+++. ++. |
T Consensus 99 e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~g-----~ttG~VvD~G~gvt~~vPI~e---G- 165 (372)
T KOG0676|consen 99 EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YASG-----RTTGLVVDSGDGVTHVVPIYE---G- 165 (372)
T ss_pred cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHcC-----CeeEEEEEcCCCceeeeeccc---c-
Confidence 367999999999999998888764 3333333333 222322 3222 23459999999977544 443 2
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
+.+........+||+++++-+...|.+
T Consensus 166 -~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 166 -YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred -cccchhhheecccchhhHHHHHHHHHh
Confidence 222222334679999999877666655
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.071 Score=57.51 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=105.0
Q ss_pred eEEEEEeCCceeEEEEEEEeC------CceEEEEEecCCCCCCcchHHHHHHHHHHHHHH---------hhccccccccH
Q psy3270 226 NVLIFDLGGGTFDVSVLAIDE------GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK---------RKHKKDILANT 290 (655)
Q Consensus 226 ~vlV~D~GggT~dvsv~~~~~------~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~---------~~~~~~~~~~~ 290 (655)
+-|++=+|-+|+++.+-.... |.....+....-..-||..-.-.+.+||.+... .+++.++. .
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--E 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--H
Confidence 345555777777777654321 111111111222335788888888888877631 11111111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEccccCC------c-------ceEEeecHHHHHHHhhHHHHhhh---hHHHHHH
Q psy3270 291 RAVRRLRTACERAKRTLSSSTEASLEIDALHEG------I-------DFYSKITRARFEELCMDLFRQTL---APVERAL 354 (655)
Q Consensus 291 ~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~------~-------~~~~~itr~~~e~~~~~~~~~i~---~~i~~~l 354 (655)
....++..-+++.+...+.... -+.++.+.++ . .+++.-+.+.+..+....++-+. +.|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2344455555666655532221 1222222211 1 12233445555566555555554 3455555
Q ss_pred HHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 355 NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 355 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++.+ -.|+.|+.+||-.+.|.+.+.+.+.. +.++..+ ..++++++|+|+.|+.-.+
T Consensus 426 ~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 426 EDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 5555 45899999999999999999999998 6666655 6788999999999986554
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.017 Score=64.95 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=65.1
Q ss_pred eecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 329 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 329 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
.-+|..+..+++.+++-+.-.++..++...-....++.|.++||.++++...+.+.+.| +.++....+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 44677778888888888776666665544222234788999999999999999999999 788876644 4578999999
Q ss_pred HHHHHcC
Q psy3270 409 QAAILSG 415 (655)
Q Consensus 409 ~a~~l~~ 415 (655)
.|+.-.|
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9986655
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.016 Score=64.30 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=54.7
Q ss_pred HHhhHHHHhhhhHHHH---HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVER---ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
.+++.+++.+.-.+.. .+++.+ ..++.|+++||+++++...+++.+.| +.++....+.+++.++|||+.|+.-
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~ 435 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHACG---IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIA 435 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHh
Confidence 3344444444433333 344433 24788999999999999999999999 7888666667778899999999876
Q ss_pred cC
Q psy3270 414 SG 415 (655)
Q Consensus 414 ~~ 415 (655)
.|
T Consensus 436 ~G 437 (484)
T PRK15027 436 AN 437 (484)
T ss_pred cC
Confidence 65
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.02 Score=64.46 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=54.4
Q ss_pred HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45566666655555555555432 35788999999999999999999999 6677665444 6889999999975
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.012 Score=59.70 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=79.0
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
+.-.+.+...|+++++.|+.++|.++..++++||.+|+..+|+++.++++.|||++..++++|.|++..++..
T Consensus 63 i~di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------- 135 (267)
T PRK15080 63 VVDFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------- 135 (267)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------
Confidence 3447778889999999999999999999999999999999999999999999999999999999999887553
Q ss_pred eEEEEeccccchhhH
Q psy3270 144 NVLIFDLGGGTFDVS 158 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~ 158 (655)
..+++|+|+++++..
T Consensus 136 ~~~vvDIGggtt~i~ 150 (267)
T PRK15080 136 NGAVVDIGGGTTGIS 150 (267)
T ss_pred CcEEEEeCCCcEEEE
Confidence 258999999999864
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.04 Score=62.18 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=53.5
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCc-cchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.+++.+++.+.-.+...++...-....++.|.++||+ ++++.+.+++.+.| +.++... .+.++.++|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 3455555555444333333322112347889999999 99999999999999 6777554 4567889999999986554
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.095 Score=50.04 Aligned_cols=143 Identities=21% Similarity=0.140 Sum_probs=88.1
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
....++. ++..++++++.||+.+|.+++++++++|+..-.... .-...-++...+-.+....++..+....+..
T Consensus 41 ~I~d~~~-~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~-----~~~~i~i~~~~i~~~di~~~~~~a~~~~~~~ 114 (187)
T smart00842 41 VIVDIEA-AARAIREAVEEAERMAGVKIDSVYVGISGRHLKSVN-----VSGVVAIPDKEITQEDIDRVLEAAKAVALPP 114 (187)
T ss_pred EEECHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEcCCceEEEe-----eEEEEECCCCEECHHHHHHHHHHhhccCCCC
Confidence 3455444 489999999999999999999999999998421000 0000111122344445555565555544555
Q ss_pred CeeEEEEeccccchhh-HHHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHH
Q psy3270 142 EKNVLIFDLGGGTFDV-SMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 214 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~-~l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~ 214 (655)
+...+-+.+.+..++. .-...+..+.|. ...-.+++.| ....+.+.+|.+.||+++..++.+|.|++.+
T Consensus 115 ~~~il~~~~~~~~~D~~~~v~~P~gm~g~~l~~~~~lv~~~----~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 115 DREILHVLPQEYILDGQEGIKDPIGMSGVRLEVDVHVVTAP----KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred CCEEEEEeeeEEEECCCCCCCCCCCCCccEEEEEEEEEEEe----hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 5555555555554442 111122222222 2344556665 4578889999999999999999999998754
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.055 Score=60.01 Aligned_cols=78 Identities=26% Similarity=0.431 Sum_probs=54.2
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..+++.+++.+.-.+...++... .....++.|.++||.++++.+.+++.+.| +.++... ...++.++|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhc
Confidence 33444444444444444333321 11124788999999999999999999999 6777665 466688999999998766
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
+
T Consensus 440 g 440 (481)
T TIGR01312 440 G 440 (481)
T ss_pred C
Confidence 5
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.052 Score=60.46 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=54.6
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..+++.+++.+.-.+...++... .....++.|.++||.++++...+.+.+.| +.++... ...++.++|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 34455555555544444443332 11224788999999999999999999999 6787654 455688999999998665
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
|
T Consensus 453 G 453 (498)
T PRK00047 453 G 453 (498)
T ss_pred C
Confidence 5
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.055 Score=60.37 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=53.7
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCC-CCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKL-DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.+++.+++.+.-.+...++...- ....++.|.++||.++++.+.+.+.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34445555554444444433211 0123788999999999999999999999 77776554 555889999999987655
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.049 Score=60.13 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=54.0
Q ss_pred HHHhhHHHHhhhhHHHH---HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVER---ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
..+++.+++.+.-.++. .+++.+ ...++.|.++||++++|...+.+.+.| +.++...-+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 34555555554444333 444432 124688999999999999999999999 688866544 46889999999986
Q ss_pred HcC
Q psy3270 413 LSG 415 (655)
Q Consensus 413 l~~ 415 (655)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 655
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.056 Score=60.80 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=52.7
Q ss_pred HhhHHHHhhhhHHH---HHHHHcCCCCCCcceEEEecCc-cchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVE---RALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 338 ~~~~~~~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
+++.+++-+.-.+. +.|+..+ ..++.|+++||. ++.+.+.+.+.+.| +.++.+..++ ++.|+|||+.|+.-
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~ 484 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVA 484 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHH
Confidence 44444444443333 3334333 347889999999 99999999999999 6888666554 68899999999876
Q ss_pred cC
Q psy3270 414 SG 415 (655)
Q Consensus 414 ~~ 415 (655)
.|
T Consensus 485 ~G 486 (536)
T TIGR01234 485 AG 486 (536)
T ss_pred cC
Confidence 65
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.071 Score=57.81 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=60.0
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCC-CCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDK-GSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
+.+....++.+.-.++..|+...... ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.+++. ++.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 34444555555555555554443333 46888999999999999999999999 688888888887 9999999999888
Q ss_pred CC
Q psy3270 415 GD 416 (655)
Q Consensus 415 ~~ 416 (655)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 73
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.049 Score=60.61 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..+++.+++.+.-.++..++... .....++.|.++||.++++...+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhc
Confidence 33444445555444444443321 11224788999999999999999999999 7788654 455788999999997665
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
|
T Consensus 449 G 449 (493)
T TIGR01311 449 G 449 (493)
T ss_pred C
Confidence 5
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.33 Score=49.06 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCcceEEEecC-ccchHHHHHHHHhhh--CCCcccCCCCchhHHHhHHHH
Q psy3270 362 GSIHDVVLVGG-SIRIPKIQKMLQDFF--NGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 362 ~~i~~ViLvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~ava~GAa~ 408 (655)
..+..|+++|| .+..|.+++.+...+ .+.++..+-|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34778999999 678999999998876 235667788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.06 Score=59.54 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=53.9
Q ss_pred HHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++.+.+++.+.-.++..++... .....++.|.++||+++++...+.+.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhcC
Confidence 3445555555444444443322 11224788999999999999999999999 77776554 456889999999987555
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.34 Score=53.71 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.++-+..|+++-.|=.|-+|--.+.+...........+|+|+|||+|.+++++ ++......+ .++|.-
T Consensus 92 N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~~~S----l~lG~v 165 (496)
T PRK11031 92 NADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT--GAQATSLFS----LSMGCV 165 (496)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec--CCceeeeeE----Eeccch
Confidence 45566666677789988666666666555555554443344689999999999999976 331222222 568988
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 166 rl~e~f 171 (496)
T PRK11031 166 TWLERY 171 (496)
T ss_pred HHHHHh
Confidence 777665
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.082 Score=59.08 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHhhHHHHhhhhHHHHHHHHc----CC--CCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERALNDA----KL--DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQ 409 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~----~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~ 409 (655)
..+++.+++.+.-.++..++.. +. ....++.|.++||+++++...+.+.+.| +.++... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 3445555555554444444432 21 1234788999999999999999999999 7788554 4557889999999
Q ss_pred HHHHcC
Q psy3270 410 AAILSG 415 (655)
Q Consensus 410 a~~l~~ 415 (655)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 976655
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.082 Score=59.00 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=53.3
Q ss_pred HHHhhHHHHhhhhHHHHHH----HHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERAL----NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
..+++.+++.+.-.+...+ +..+ ..++.|.++||.++++...+.+.+.| +.++....++ ++.++|||+.|+
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~ 447 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGL 447 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHH
Confidence 3445555555544433332 2233 24788999999999999999999999 6888665444 688999999998
Q ss_pred HHcC
Q psy3270 412 ILSG 415 (655)
Q Consensus 412 ~l~~ 415 (655)
.-.|
T Consensus 448 ~~~G 451 (505)
T TIGR01314 448 KALG 451 (505)
T ss_pred HhcC
Confidence 6554
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.099 Score=57.53 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=42.6
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||+++.+...+.+.+.+ +.++... +.++.++|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999 6777543 367899999999987655
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.13 Score=54.08 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=47.4
Q ss_pred HHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 354 LNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 354 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.+..+........|+.|||.|+...|-+.|.+.| +.++..- +-.++.+.|+|+.|+.
T Consensus 433 ~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 433 AEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred hccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 3445666667899999999999999999999999 6666544 7788999999999864
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.11 Score=58.24 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=53.0
Q ss_pred HHHhhHHHHhhhhHHHH---HHHH-cCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVER---ALND-AKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~---~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
..+++.+++.+.-.+.. .+++ .+. .++.|.++||+++++...+.+.+.| +.++....++ ++.++|||+.|+
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~ 455 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAG 455 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHH
Confidence 33444445555433333 3333 232 4788999999999999999999999 7888766544 578999999998
Q ss_pred HHcC
Q psy3270 412 ILSG 415 (655)
Q Consensus 412 ~l~~ 415 (655)
.-.|
T Consensus 456 ~~~G 459 (520)
T PRK10939 456 VGAG 459 (520)
T ss_pred HHhC
Confidence 6655
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.12 Score=57.21 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=42.3
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||+++++...+.+.+.+ +.++... +.++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999 6777543 247899999999987655
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.5 Score=47.56 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=52.4
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHccc----ccc---cCCCceEEEEEeCCceeEEEE
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGL----DKN---LKGEKNVLIFDLGGGTFDVSV 241 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~----~~~---~~~~~~vlV~D~GggT~dvsv 241 (655)
.-..+++|=|..--+.-.+.+.+. -+.-+++-+. -.+||.+.... ... -..+...+|+|-|.+-|.+.-
T Consensus 92 ~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~---kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip 168 (400)
T KOG0680|consen 92 KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVL---KTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP 168 (400)
T ss_pred CcceEEEecccccccchhhhHHHHHHHHhccceEe---ecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh
Confidence 345678887776544433333332 3444554322 23344443322 111 013458999999999777664
Q ss_pred EEEeCCceEEEEEecCCCCCCcchHHHHHHHHH
Q psy3270 242 LAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274 (655)
Q Consensus 242 ~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~ 274 (655)
+-......-.|+ ...+||..+++.|.+.+
T Consensus 169 ~v~g~~~~qaV~----RiDvGGK~LTn~LKE~i 197 (400)
T KOG0680|consen 169 VVKGIPYYQAVK----RIDVGGKALTNLLKETI 197 (400)
T ss_pred hhcCcchhhceE----EeecchHHHHHHHHHHh
Confidence 432211011122 25699999999987765
|
|
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=93.67 E-value=10 Score=46.70 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=49.3
Q ss_pred ecHHHHHHHhhHHH-HhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 330 ITRARFEELCMDLF-RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 330 itr~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
++-++...-+..+. +...+.|+......+.++.+ -.++..||++ |...-.|.+.++-..+..+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444444433 34455666666666766654 2344455554 66778888888545588888999999999886
Q ss_pred HH
Q psy3270 409 QA 410 (655)
Q Consensus 409 ~a 410 (655)
--
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.096 Score=56.03 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=48.9
Q ss_pred hhHHHHHHHHcCCCCC--CcceEEEecCccchHHHHHHHHhhhCC-------CcccCCCCchhHHHhHHHHHHHH
Q psy3270 347 LAPVERALNDAKLDKG--SIHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 347 ~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f~~-------~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.+.+..+|+....... .+.+|+|+||+|.+|++.++|...+.. ..|....||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 3445555555432222 278999999999999999999988732 24556679999999999999875
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.56 Score=52.27 Aligned_cols=80 Identities=28% Similarity=0.292 Sum_probs=47.6
Q ss_pred cHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHH
Q psy3270 331 TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 331 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 410 (655)
+|.+|-..+-.-+--.+....+.|.+.. ...++.|.++||+++.+...+++.+.| +.++..+...+.+.+.||++.+
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~~--g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~ 447 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEELG--GKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAA 447 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHH
Confidence 5544443333222222333334444441 234568999999999999999999999 6777755444444444444444
Q ss_pred HHH
Q psy3270 411 AIL 413 (655)
Q Consensus 411 ~~l 413 (655)
...
T Consensus 448 ~~~ 450 (502)
T COG1070 448 AAL 450 (502)
T ss_pred HHh
Confidence 433
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.5 Score=48.21 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEE
Q psy3270 186 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 186 ~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 243 (655)
.-+.+..+-+..|+++-.|=-|-+|--.+.|.-..+......+|+|+|||+|.+++..
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEec
Confidence 4456677777889888777777777666666655544467899999999999999986
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=91.15 E-value=3.5 Score=42.67 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=38.8
Q ss_pred CCcceEEEecCccchHHHHHHHHhhhCCC---cccCCCCc----hhHHHhHHHHHHHHHcCC
Q psy3270 362 GSIHDVVLVGGSIRIPKIQKMLQDFFNGK---SLNLSINP----DEAVAYGAAVQAAILSGD 416 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---~v~~~~~p----~~ava~GAa~~a~~l~~~ 416 (655)
.+++.|+|.|-.+++|-+.+.+++.|... ++ ..+.+ -...|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 45788999999999999988888777321 11 11222 245899999999877763
|
The function of this family is unknown. |
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.82 Score=46.85 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.+.-+..|+++-.|=.|-+|.-.+.+...........+|+|+|||+|.+++++ ++......+ .++|.-
T Consensus 72 N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~~~S----l~lG~v 145 (285)
T PF02541_consen 72 NSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFE--NGKVVFSQS----LPLGAV 145 (285)
T ss_dssp THHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEE--TTEEEEEEE----ES--HH
T ss_pred CHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEE--CCeeeEeee----eehHHH
Confidence 33444555556679887555555555443334333333467799999999999999986 332223233 568888
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.95 Score=45.94 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=48.7
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhh----CCCcccCCCCchhHHHhHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF----NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f----~~~~v~~~~~p~~ava~GAa~~a 410 (655)
++++...+.+.+.+...++........ |+|+||..+.+.+++.+.+.+ +..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 344445555566666666665543322 999999999977777664444 33445567789999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.95 E-value=3.1 Score=47.65 Aligned_cols=45 Identities=29% Similarity=0.500 Sum_probs=32.1
Q ss_pred CCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEE
Q psy3270 198 GLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 198 Gl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 243 (655)
+.++..+.+-|.|..+....-.....+ +++++||||.|||++++.
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 335566788888876665443121223 699999999999999987
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.4 Score=49.21 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.++-+..|+++-.|=.+-+|--.+.+...........+|+|+|||+|.+++++- +......+ .++|.-
T Consensus 97 N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~--~~~~~~~S----~~lG~v 170 (513)
T PRK10854 97 NATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGEN--FEPILVES----RRMGCV 170 (513)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecC--CCeeEeEE----Eeccee
Confidence 444555566667799875555555555444455544333456899999999999999863 21222222 257777
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 171 rl~e~f 176 (513)
T PRK10854 171 SFAQLY 176 (513)
T ss_pred eHHhhh
Confidence 776654
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.8 Score=47.10 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=42.9
Q ss_pred HHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 107 ATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 107 ~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
.+..+++.|||++..++.+|.|++..+... ...+.+.+.+|+|+++++..+.
T Consensus 170 ~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~--~e~~~gv~vvDiGggtTdisv~ 221 (420)
T PRK09472 170 NIVKAVERCGLKVDQLIFAGLASSYAVLTE--DERELGVCVVDIGGGTMDIAVY 221 (420)
T ss_pred HHHHHHHHcCCeEeeEEehhhHHHHHhcCh--hhhhcCeEEEEeCCCceEEEEE
Confidence 346789999999999999999999987544 2346789999999999997543
|
|
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.93 E-value=20 Score=35.94 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCCCcceEEEecCccchHHHHHHHHhhhCC-Ccc--cCCCCchhHHHhHHHH
Q psy3270 360 DKGSIHDVVLVGGSIRIPKIQKMLQDFFNG-KSL--NLSINPDEAVAYGAAV 408 (655)
Q Consensus 360 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~v--~~~~~p~~ava~GAa~ 408 (655)
-+..+|.|+|+||.++...+-++|.+...- .++ .-.-+-.+|.|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 356799999999999999999999887621 122 2223555788888864
|
|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.6 Score=46.69 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCC-CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKG-SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~-~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
+.+++..++.+.-...++++...-... .+..+-+=||.|+..++.+...+.+ +.++.++ .-.|+.|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp-~~~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERP-VVLETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecc-ccchhhHHHHHHHHhhhh
Confidence 455666666666665555554332222 5788889999999999999999999 6777766 445688999999998766
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
+
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 5
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.52 Score=48.38 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=9.7
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
..+++.+.|++.....+..+.+ -.++.+||.+ |.+...+.+.++-..+..+..|.-+.|.||++
T Consensus 220 ~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 220 ANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3444455555554444554433 2355566666 66777888877444555555678899999885
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=86.82 E-value=17 Score=36.86 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=92.1
Q ss_pred cChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEE-ecC-CCCCCcchHHHHHHHHHHHHHHhhc
Q psy3270 205 INEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS-TAG-DTHLGGEDFDNRLVTFFADEFKRKH 282 (655)
Q Consensus 205 i~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~-~~~-~~~lGG~~~d~~l~~~~~~~~~~~~ 282 (655)
+..|+=..++|..... ..-.+++|.|+-..|..+.|- +|..+.=.. +.| -..++ -.+|-.+...+-.
T Consensus 129 ~aSpEKi~iay~a~~~-~~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG~lh-GpLDlE~ir~Id~------ 197 (326)
T TIGR03281 129 IASPEKVSIAYNAYCL-TGFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPGVLH-GPLDLEAIRNIDA------ 197 (326)
T ss_pred cCCHHHHHHHHHHHHH-cCCCCEEEEecCCCeEEEEEE---CCEEEccccccccCccccc-CcccHHHHHhccc------
Confidence 4567777777765443 123689999999999988874 342211111 111 11122 3455544433311
Q ss_pred cccccccHHHHHHHHHHHH-HHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhH------HHHhhhhHHHHHHH
Q psy3270 283 KKDILANTRAVRRLRTACE-RAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMD------LFRQTLAPVERALN 355 (655)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~e-~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~------~~~~i~~~i~~~l~ 355 (655)
.+ .+-..||...-..+. ..+.+ ...+++||.+.+.. -++.+...+...+.
T Consensus 198 -----------------g~~tan~aFs~aGa~kIa--~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIa 254 (326)
T TIGR03281 198 -----------------GKKTANEAFSHAGAVKIA--CADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVAMEIA 254 (326)
T ss_pred -----------------CcccHHHHHhhcCeeEEe--ccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 00 111223322222211 11111 14567777665422 22333332222222
Q ss_pred HcCCCCCCcceEEEecC--ccchH-HHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 356 DAKLDKGSIHDVVLVGG--SIRIP-KIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 356 ~~~~~~~~i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
...........|+|.|- +++.| .+++.|++.| ..++.. +.. .+.|.|+|+.|--+.+
T Consensus 255 sLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 255 SLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred hheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhC
Confidence 22211122347999987 99999 9999999999 444433 233 7889999999977665
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.5 Score=44.66 Aligned_cols=74 Identities=24% Similarity=0.269 Sum_probs=46.3
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccC----CCCchhHHHhHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL----SINPDEAVAYGAAVQAA 411 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~----~~~p~~ava~GAa~~a~ 411 (655)
++++.-+.+-+...|.+.++.... .++.|+++||+++.|.+.+.|++.+++..+.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 444555555555666666666542 27889999999999999999999997644432 34555444555567775
Q ss_pred H
Q psy3270 412 I 412 (655)
Q Consensus 412 ~ 412 (655)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 4
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=86.50 E-value=48 Score=35.15 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=57.0
Q ss_pred eecHHHHHHHhhHHHHhhh-hHHHHHHHHcCCCCCCcce-EEEecCccchHHHHHHHHhhhCCCcccCCC-CchhHHHhH
Q psy3270 329 KITRARFEELCMDLFRQTL-APVERALNDAKLDKGSIHD-VVLVGGSIRIPKIQKMLQDFFNGKSLNLSI-NPDEAVAYG 405 (655)
Q Consensus 329 ~itr~~~e~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~-~p~~ava~G 405 (655)
.-.+.++...++..+++++ ..++..++..+ ++. ++|.||....-..-..|.+..+-..+.+++ --|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4577788888888887765 45666666665 455 999999999988888888875334555444 448999999
Q ss_pred HHHHHHHHcC
Q psy3270 406 AAVQAAILSG 415 (655)
Q Consensus 406 Aa~~a~~l~~ 415 (655)
||+++....+
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986554
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=85.05 E-value=50 Score=34.10 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=29.9
Q ss_pred HcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEE
Q psy3270 196 IAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242 (655)
Q Consensus 196 ~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 242 (655)
..|++ +.+.|+..|+|++-.........++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 33664 67899999999875433222245678889999875 55554
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=84.69 E-value=9.7 Score=39.26 Aligned_cols=71 Identities=25% Similarity=0.366 Sum_probs=41.5
Q ss_pred HHHHHcCCcceeecChHHHHHHHc-ccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHH
Q psy3270 192 DAGSIAGLNVLRIINEPTAAALAY-GLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRL 270 (655)
Q Consensus 192 ~a~~~AGl~~~~li~Ep~Aaal~~-~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l 270 (655)
..-+..|+++- +++..+=|.+.| +........ ..+++|+|||+|.++++. ++......+ .++|.-.+.+.+
T Consensus 93 ~i~~~tgi~i~-visg~eEa~l~~~gv~~~~~~~-~~~v~DiGGGSte~~~~~--~~~~~~~~S----l~lG~vrl~e~f 164 (300)
T TIGR03706 93 EAEAILGLPIE-VISGEEEARLIYLGVAHTLPIA-DGLVVDIGGGSTELILGK--DFEPGEGVS----LPLGCVRLTEQF 164 (300)
T ss_pred HHHHHHCCCeE-EeChHHHHHHHHHHHHhCCCCC-CcEEEEecCCeEEEEEec--CCCEeEEEE----EccceEEhHHhh
Confidence 33445688764 555555555544 333222222 349999999999999875 232222222 567777776654
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.62 E-value=14 Score=38.62 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCCcceEEEecCccchHHHHHHHHhhhCCCccc----CCCCchhHHHhHHHHHHHHH
Q psy3270 359 LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 359 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~----~~~~p~~ava~GAa~~a~~l 413 (655)
.-....+..+++||+.+.|.+.+.|...+++..|. ..+++|..=|.+-|+.|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34556788999999999999999999999764443 25678877778888888654
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=83.78 E-value=3.7 Score=43.76 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=64.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 65 APEEISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 65 ~~~ev~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
.--+....+++++... .++. .-..++++.|...+..+|+.+.+.+ +..|.+.+.+++++.++++++|
T Consensus 72 ~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------- 141 (373)
T smart00268 72 ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG------- 141 (373)
T ss_pred eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------
Confidence 3455666777777653 2333 2357899999999999999999987 5789999999999999999886
Q ss_pred CeeEEEEeccccchhh
Q psy3270 142 EKNVLIFDLGGGTFDV 157 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~ 157 (655)
....+++|+|++.+..
T Consensus 142 ~~~~lVVDiG~~~t~v 157 (373)
T smart00268 142 RTTGLVIDSGDGVTHV 157 (373)
T ss_pred CCEEEEEecCCCcceE
Confidence 4567788888777664
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=83.50 E-value=3.7 Score=43.75 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHh-hhhcCCceeeeccchhHHHHhhccccccCCCee
Q psy3270 68 EISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKN 144 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a-~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~ 144 (655)
+....+++++... .+.. .-..+++++|..++..+|+.+.+. .+..|...+.+++++.++++++|. ..
T Consensus 75 ~~~e~~~~~~~~~---~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~ 144 (371)
T cd00012 75 DDMEKIWDHLFFN---ELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TT 144 (371)
T ss_pred HHHHHHHHHHHHH---hcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------Ce
Confidence 3445666666543 2222 346789999999998888888775 777999999999999999998865 56
Q ss_pred EEEEeccccchhh
Q psy3270 145 VLIFDLGGGTFDV 157 (655)
Q Consensus 145 ~~~~d~g~~~~~~ 157 (655)
.+++|+|++.+..
T Consensus 145 ~lVVDiG~~~t~i 157 (371)
T cd00012 145 GLVVDSGDGVTHV 157 (371)
T ss_pred EEEEECCCCeeEE
Confidence 7777877776664
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=33 Score=35.76 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=22.1
Q ss_pred cceEEEecCccchHHHHHHHHhhh
Q psy3270 364 IHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 364 i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
+..|+|+||-+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 567999999999999999999976
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=82.26 E-value=69 Score=33.54 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=37.6
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCC--CcccCCC---CchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNG--KSLNLSI---NPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~--~~v~~~~---~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|+|.||.+...++++.|.+.+.. ..+..+. --|.++++|+|=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 467799999999999999999998732 2333332 3478899998854443333
|
|
| >PLN02920 pantothenate kinase 1 | Back alignment and domain information |
|---|
Probab=80.90 E-value=26 Score=37.09 Aligned_cols=49 Identities=12% Similarity=-0.062 Sum_probs=36.8
Q ss_pred CCcceEEEecCccchH-HHHHHHHhhh-----CCCcccCCCCchhHHHhHHHHHH
Q psy3270 362 GSIHDVVLVGGSIRIP-KIQKMLQDFF-----NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~p-~v~~~l~~~f-----~~~~v~~~~~p~~ava~GAa~~a 410 (655)
..++.|+++|++.|.+ ..++.|.-.+ ++.+....-+....-|+||++..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4588899999999998 6676454332 34556666788899999998765
|
|
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=80.02 E-value=9 Score=40.45 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=45.7
Q ss_pred hhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc----CCCCchhHHHhHHHHHHHH
Q psy3270 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 339 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~----~~~~p~~ava~GAa~~a~~ 412 (655)
+.-+.+-+...|.+.++... ...+.|+++||+++.|.+.++|++.++ .++. ...+|+.-=|..-|++|..
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33344444555566665433 224679999999999999999999995 3332 2246665556666777754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 655 | ||||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 0.0 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 0.0 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 0.0 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-120 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-117 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 1e-116 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-116 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-116 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-115 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-115 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-115 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-115 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-114 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-114 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-114 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-114 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-114 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-114 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-114 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-114 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 1e-114 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-114 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-113 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-113 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-113 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-113 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-113 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-112 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-112 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 1e-112 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-112 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-112 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-112 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-111 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-111 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-110 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-101 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-87 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 9e-87 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 2e-85 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 3e-84 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 2e-82 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-82 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 5e-68 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 5e-62 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 3e-61 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 1e-52 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 3e-49 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 6e-49 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 9e-49 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-48 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-46 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 2e-46 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-45 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 4e-43 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 5e-43 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-40 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 2e-40 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 5e-37 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-36 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 3e-30 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 4e-27 | ||
| 3lof_A | 113 | C-Terminal Domain Of Human Heat Shock 70kda Protein | 1e-16 | ||
| 2lmg_A | 75 | Solution Structure Of The C-Terminal Domain (537-61 | 7e-15 | ||
| 1ud0_A | 113 | Crystal Structure Of The C-Terminal 10-Kda Subdomai | 5e-12 | ||
| 2p32_A | 120 | Crystal Structure Of The C-Terminal 10 Kda Subdomai | 1e-10 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-06 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 6e-06 |
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b. Length = 113 | Back alignment and structure |
|
| >pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of Human Heat Shock Protein 70 Length = 75 | Back alignment and structure |
|
| >pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of Hsc70 Length = 113 | Back alignment and structure |
|
| >pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From C. Elegans Hsp70 Length = 120 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 655 | |||
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 1e-111 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 6e-97 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 2e-73 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 3e-60 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 1e-112 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 1e-112 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 1e-123 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 3e-79 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 1e-108 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 1e-108 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-106 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 6e-91 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 8e-86 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 5e-83 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 5e-77 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 1e-66 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 2e-33 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 1e-28 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 1e-18 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 2e-28 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 2e-24 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 3e-22 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 3e-08 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 3e-14 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 3e-10 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 4e-14 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 9e-10 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 3e-06 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 6e-04 |
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 896 bits (2318), Expect = 0.0
Identities = 337/429 (78%), Positives = 376/429 (87%), Gaps = 1/429 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 127 MKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + E+NVLIFDLGGGTFDVS+L I G +F+VKSTAGDTHLGGEDFDNR+V F EF
Sbjct: 187 KKVGAERNVLIFDLGGGTFDVSILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEF 245
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHKKDI N RAVRRLRTACERAKRTLSSST+AS+EID+L+EGIDFY+ ITRARFEEL
Sbjct: 246 KRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEEL 305
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
DLFR TL PVE+AL DAKLDK IHD+VLVGGS RIPKIQK+LQDFFNGK LN SINP
Sbjct: 306 NADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP 365
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S +QD+LL+DV PLSLGIETAGGVMT +++RN+ IP KQ
Sbjct: 366 DEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQT 425
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQ V IQV+EGERAMTKDNNLLG F LTGIPPAPRGVP+IEVTFD+DANGI
Sbjct: 426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI 485
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSA D STGK +ITI NDKGRLSK+DI+RM+ EAEKYKAED+KQR++V++KN LESY
Sbjct: 486 LNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESY 545
Query: 579 AFAVKQAAE 587
AF +K E
Sbjct: 546 AFNMKATVE 554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-111
Identities = 121/156 (77%), Positives = 137/156 (87%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NTVFDAKRLIGR+F+D +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE
Sbjct: 59 VAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEE 118
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
+SSMVLTKM+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTA
Sbjct: 119 VSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 178
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK + E+NVLIFDLGGGTFDVS+ IA
Sbjct: 179 AAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAA 214
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 824 bits (2131), Expect = 0.0
Identities = 135/514 (26%), Positives = 235/514 (45%), Gaps = 30/514 (5%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ + +++ I VP ++ + QR DA IAGLN +RI+N+ TAA ++YG+
Sbjct: 126 VKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIF 185
Query: 219 KNL-----KGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
K + + V D+G ++ S++A +G +V TA D H GG DFD +
Sbjct: 186 KTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEH 244
Query: 274 FADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRA 333
FADEFK K+K DI N +A R+ TA E+ K+ LS++T A ++++ +D S+++R
Sbjct: 245 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSRE 304
Query: 334 RFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN 393
EEL L + PV +AL AKL + V ++GG+ RIP +++ + + F GK L+
Sbjct: 305 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLS 363
Query: 394 LSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGV----MTKIVER 449
++N DEA+A GAA AI S ++ D+ P S+ V ++
Sbjct: 364 TTLNQDEAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPA 421
Query: 450 NSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGI--PPAPRGVPKI 507
S P + T D A + T + + + +TG+ P VP +
Sbjct: 422 GSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-V 478
Query: 508 EVTFDLDANGILNVS----------AKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEK 557
++ D +G+ + D+ T K + +TI L ++ ++ + +
Sbjct: 479 KLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENE 538
Query: 558 YKAEDDKQRERVAAKNKLESYAFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWL-EGN 615
A+D E KN LE Y + ++ E+ SDA+KT + + WL +
Sbjct: 539 MLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEG 598
Query: 616 SLAEKEEFEDRLKTLQQTCTPIMTKLHQAGGKGP 649
+ K ++ + + L I + +
Sbjct: 599 FDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKK 632
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = 6e-97
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPE 67
N KNTV + KR+IG + +++ KH+ +V D K +V + GE F+
Sbjct: 57 QTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSAT 116
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
++++M + K+++ + +++ I VP ++ + QR DA IAGLN +RI+N+ T
Sbjct: 117 QLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVT 176
Query: 128 AAALAYGLDKNL-----KGEKNVLIFDLGGGTFDVSMREIAE 164
AA ++YG+ K + + V D+G ++ S+ +
Sbjct: 177 AAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK 218
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 638 bits (1648), Expect = 0.0
Identities = 245/494 (49%), Positives = 331/494 (67%), Gaps = 21/494 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGS---LFQVKSTAGDTHLGGEDFDNRLVTFFA 275
K G + + ++DLGGGTFD+S++ IDE F+V +T GDTHLGGEDFD+RL+ +
Sbjct: 183 KG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 276 DEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS--TEASLE-IDALHEG---IDFYSK 329
+EFK+ D+ + A++RL+ A E+AK LSS+ T+ +L I A G ++ K
Sbjct: 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNI--K 299
Query: 330 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389
+TRA+ E L DL +++ P++ AL DA L I DV+LVGG R+P +QK + +FF G
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-G 358
Query: 390 KSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVER 449
K +NPDEAVA GAAVQ +L+GD ++DVLL+DV PLSLGIET GGVMT ++ +
Sbjct: 359 KEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAK 414
Query: 450 NSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEV 509
N+ IP K Q F+T DNQ+AVTI V +GER DN LG FNL GI PAPRG+P+IEV
Sbjct: 415 NTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEV 474
Query: 510 TFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERV 569
TFD+DA+GIL+VSAKD ++GK ++ITI+ G L++D+I +M+ +AE D K E V
Sbjct: 475 TFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELV 533
Query: 570 AAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKT 629
+N+ + + ++ E++G KL DKT++ A +A T L+G K E +++
Sbjct: 534 QTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGED---KAAIEAKMQE 590
Query: 630 LQQTCTPIMTKLHQ 643
L Q +M Q
Sbjct: 591 LAQVSQKLMEIAQQ 604
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 2e-73
Identities = 92/160 (57%), Positives = 119/160 (74%), Gaps = 6/160 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V+ + K AP +I
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQI 115
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAA
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGG 169
ALAYGLDK G + + ++DLGGGTFD+S+ EI EV
Sbjct: 176 ALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEK 214
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 613 bits (1582), Expect = 0.0
Identities = 219/422 (51%), Positives = 297/422 (70%), Gaps = 13/422 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++ AE YLG V+ AVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAALAYGLD
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + ++ +L++DLGGGTFDVS+L + +G +F+VK+TAGD HLGG+DFD ++ + ++F
Sbjct: 157 K--EEDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQF 213
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRAR 334
K++H D+ + A++RL+ A E+AK+ LS T+ + I A G + +TRA+
Sbjct: 214 KQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAK 273
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FEEL L +T+ PV +AL DA L I V+LVGGS RIP +Q+ ++ GK +
Sbjct: 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHK 332
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
+NPDE VA GAA+Q +++G+ ++DV+L+DV PLSLGIET GGV TK++ERN+ IP
Sbjct: 333 GVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIP 388
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
+ Q FTT +DNQ V I V +GER M DN LG F LTGIPPAPRGVP+IEVTFD+D
Sbjct: 389 TSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID 448
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGI++V AKD T K + ITI++ G LS+++I RM+ EAE+ D K++E +N+
Sbjct: 449 ANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRKRKEAAELRNE 507
Query: 575 LE 576
+
Sbjct: 508 AD 509
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 3e-60
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 30/154 (19%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 70
NP NT+ KR +G ++ VE +G K++ P+EIS
Sbjct: 59 TNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEIS 90
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+++L ++ AE YLG V+ AVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAA
Sbjct: 91 AIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAA 150
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
LAYGLDK + ++ +L++DLGGGTFDVS+ E+ +
Sbjct: 151 LAYGLDK--EEDQTILVYDLGGGTFDVSILELGD 182
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 211/260 (81%), Positives = 232/260 (89%), Gaps = 3/260 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLGGKV AVITVPAYFNDSQRQATKDAG+I GLNVLRIINEPTAAA+AYGLD
Sbjct: 146 MKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLD 205
Query: 219 K--NLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFAD 276
K GEKNVLIFDLGGGTFDVS+L I++G +F+VKSTAGDTHLGGEDFDNR+V+ A+
Sbjct: 206 KKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAE 264
Query: 277 EFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFE 336
EFKRKHKKDI N RAVRRLRTACERAKRTLSSST+AS+EID+L+EG+DFY+ ITRARFE
Sbjct: 265 EFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFE 324
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
EL DLFR TL PVE+AL DAKLDKG I ++VLVGGS RIPKIQK+LQDFFNGK LN SI
Sbjct: 325 ELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSI 384
Query: 397 NPDEAVAYGAAVQAAILSGD 416
NPDEAVAYGAAVQAAIL GD
Sbjct: 385 NPDEAVAYGAAVQAAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-112
Identities = 128/158 (81%), Positives = 138/158 (87%), Gaps = 2/158 (1%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NT+FDAKRLIGRKFED +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEE
Sbjct: 78 VAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEE 137
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
ISSMVLTKM+EIAE YLGGKV AVITVPAYFNDSQRQATKDAG+I GLNVLRIINEPTA
Sbjct: 138 ISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTA 197
Query: 129 AALAYGLDK--NLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK GEKNVLIFDLGGGTFDVS+ I +
Sbjct: 198 AAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED 235
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 369 bits (951), Expect = e-123
Identities = 138/269 (51%), Positives = 181/269 (67%), Gaps = 21/269 (7%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGS---LFQVKSTAGDTHLGGEDFDNRLVTFFA 275
K G + + ++DLGGGTFD+S++ IDE F+V +T GDTHLGGEDFD+RL+ +
Sbjct: 183 KG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 276 DEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI-------DA---LHEGID 325
+EFK+ D+ + A++RL+ A E+AK LSS+ + ++ DA H I
Sbjct: 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI- 298
Query: 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD 385
K+TRA+ E L DL +++ ++ AL DA L I DV+LVGG R+P +QK + +
Sbjct: 299 ---KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAE 355
Query: 386 FFNGKSLNLSINPDEAVAYGAAVQAAILS 414
FF GK +NPDEAVA GAAVQ +L+
Sbjct: 356 FF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 255 bits (655), Expect = 3e-79
Identities = 94/160 (58%), Positives = 120/160 (75%), Gaps = 6/160 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V KG +K AP +I
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQI 115
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAA
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGG 169
ALAYGLDK G + + ++DLGGGTFD+S+ EI EV
Sbjct: 176 ALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEK 214
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 322 bits (828), Expect = e-108
Identities = 107/149 (71%), Positives = 134/149 (89%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DVAPLSLGIETAGGVMT +++RN+RIP K +TFTTY+DNQ V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LGTF L+GIPPAPRGVP+IEVTF++DANGILNVSA+D STGK+ RITIQN+KGRL++ D
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
IDRM+ EA++++ ED +QRERV A+N+LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 321 bits (826), Expect = e-108
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV L+LGIET GGVMT +++RN+ IP K+ Q F+T DNQ V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LLG F LTGIPPAPRGVP+IEVTF LDANGIL VSA D TGK+E ITI NDKGRL++++
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
IDRM+ EAEK+ +ED + +V ++NKLE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = e-106
Identities = 86/149 (57%), Positives = 120/149 (80%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PL+LGIET GGVMTK++ RN+ IP K+ Q F+T +D+Q+AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LG F++TGIPPAPRGVP+IEVTF++D NGIL+VSA+D TG ++TI ND RLS +D
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
I+RM+ +A+K+ A+D Q+E+V ++N+LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 6e-91
Identities = 102/223 (45%), Positives = 143/223 (64%), Gaps = 4/223 (1%)
Query: 424 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMT 483
VLL+DV PLSLGIET GGVMT ++ +N+ IP K Q F+T DNQ+AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 484 KDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRL 543
DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD ++GK ++ITI+ G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 544 SKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQ 603
++D+I +M+ +AE D K E V +N+ + + ++ E++G KL DKT++
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 604 ACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGG 646
A +A T L+G +K E +++ L Q +M Q
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 8e-86
Identities = 92/179 (51%), Positives = 116/179 (64%), Gaps = 5/179 (2%)
Query: 409 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQ 468
L + +DV PLSLGIET GGV TK++ RN+ IP K+ Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 469 NAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSST 528
V I+V +GER M DN LLG F L GIPPAPRGVP+IEVTFD+DANGI++VSAKD T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 529 GKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 587
G+ ++I IQ+ G LSKDDI+ M+ AEKY ED +++ERV A N E + E
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 5e-83
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 4/220 (1%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PLSLG+ET GG++ K++ RN+ IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
L F L GIP P G I VTF +DA+G+L+V+A + STG I ++ G L+ +
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSA 607
I M+ ++ Y +D K R K + ++ A + LS A++ + A +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 608 TLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGGK 647
+G+ + + E +K + + + +
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVR 217
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 5e-77
Identities = 89/149 (59%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PLSLGIET GG+MTK++ RN+ IP K+ Q F+T +D Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LLG F+L GIPPAPRGVP++EVTFD+DANGI+NVSA+D TGK ++I IQ+ G LSKD
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
I+ M+ EAEK AED K++E V N+ E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 1e-66
Identities = 72/137 (52%), Positives = 93/137 (67%), Gaps = 4/137 (2%)
Query: 405 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTY 464
G++ + +VDV PLSLGIET GGVMT ++ +N+ IP K Q F+T
Sbjct: 2 GSSHHHHHHGLV----PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA 57
Query: 465 SDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAK 524
DNQ+AVTI V +GER DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAK
Sbjct: 58 EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAK 117
Query: 525 DSSTGKAERITIQNDKG 541
D ++GK ++ITI+ G
Sbjct: 118 DKNSGKEQKITIKASSG 134
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-33
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 555 AEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWL 612
+ + + LESYAF +KQ ED K+S DK + C L WL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 613 EGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGG---------------KGPDVEEVD 655
+ N AEKEEFE + K L+ PI++KL+Q+ G GP +EEVD
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTIEEVD 120
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 44/248 (17%), Positives = 82/248 (33%), Gaps = 59/248 (23%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
E LG ++ +A +P +A + AGL ++ +++EP AAA A G++
Sbjct: 84 VERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGINDG-- 141
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
++ D+GGGT ++V+ ++ + D GG L + F
Sbjct: 142 -----IVVDIGGGTTGIAVI-----EKGKI-TATFDEPTGGTHLSLVLAGSYKIPF---- 186
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDL 342
A E K+ S E + + E
Sbjct: 187 --------------EEA-ETIKKDFSRHREIMRVVRPVIE-------------------- 211
Query: 343 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402
+ + + + V +VGG+ + + F GK + + I+P
Sbjct: 212 ------KMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVT 264
Query: 403 AYGAAVQA 410
G A+
Sbjct: 265 PLGIALFG 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+ ++ +++ E LG ++ +A +P +A + AGL ++ +++EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 158
AAA A G++ ++ D+GGGT ++
Sbjct: 131 AAARALGINDG-------IVVDIGGGTTGIA 154
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-28
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 19/112 (16%)
Query: 563 DKQRERVAAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACSATLTWLEGNSLAEK 620
+ ERV+AKN LESYAF +K A ED G K+S+ADK V C ++WL+ N+LAEK
Sbjct: 2 NAAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEK 61
Query: 621 EEFEDRLKTLQQTCTPIMTKLHQAGG-----------------KGPDVEEVD 655
+EFE + K L+Q C PI++ L+Q G GP +EEVD
Sbjct: 62 DEFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-24
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 24/112 (21%)
Query: 568 RVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFED 625
+ LESYAF +K ED K++D DK + C+ ++WL+ N AEKEEFE
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 626 RLKTLQQTCTPIMTKLHQAGG----------------------KGPDVEEVD 655
+ K L++ C PI+TKL+Q+ G GP +EEVD
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 3e-22
Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 36/247 (14%)
Query: 166 YLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 225
Y + + +++ T + G + ++++ E A + L
Sbjct: 107 YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQE--LDELD 164
Query: 226 NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKD 285
++LI DLGG T D+S + G L + GD+ LG + +
Sbjct: 165 SLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDAL----------- 210
Query: 286 ILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQ 345
RT SS A I + +I + + +
Sbjct: 211 ----------------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNE 254
Query: 346 TLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVA 403
L +E+ + + + V+++GG + I ++ + + N +
Sbjct: 255 ALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLV 312
Query: 404 YGAAVQA 410
G +
Sbjct: 313 NGMYLIG 319
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 84 YLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143
Y + + +++ T + G + ++++ E A + L
Sbjct: 107 YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQE--LDELD 164
Query: 144 NVLIFDLGGGTFDVSM 159
++LI DLGG T D+S
Sbjct: 165 SLLIIDLGGTTLDISQ 180
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 3e-14
Identities = 36/262 (13%), Positives = 79/262 (30%), Gaps = 51/262 (19%)
Query: 161 EIAEVYLGGKVSEAVIT-VPAYFNDSQRQATKDA------------GSIAGLNVLRIINE 207
E G V + + P D + +A K+A G + N+ R+I
Sbjct: 110 ESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMR 169
Query: 208 PTAAALAYGL---DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264
P A L + ++ D+G T DV + + + V + +G
Sbjct: 170 PQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP--VVELSFSLQIGVG 227
Query: 265 DFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI 324
D + L + + ++ + + R K+ +
Sbjct: 228 DAISAL----SRKIAKETGFVVPFDLAQEALSHPVMFRQKQ------------------V 265
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 384
+++ E+L + + ++ + ++ VGG + I +
Sbjct: 266 GG-PEVSGPILEDLANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFE 315
Query: 385 DFFNGKSLNLSI-NPDEAVAYG 405
+ G + + + A A G
Sbjct: 316 EIAPGTLVKIKPEDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 3e-10
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 16/124 (12%)
Query: 52 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVIT-VPAYFNDSQRQATKD 110
+ + A +E ++ + E G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 111 A------------GSIAGLNVLRIINEPTAAALAYGL---DKNLKGEKNVLIFDLGGGTF 155
A G + N+ R+I P A L + ++ D+G T
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTT 202
Query: 156 DVSM 159
DV
Sbjct: 203 DVLT 206
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 4e-14
Identities = 31/260 (11%), Positives = 73/260 (28%), Gaps = 52/260 (20%)
Query: 162 IAEVYLGGKVSEA--VITVPA--YFNDSQRQATKDA------------GSIAGLNVLRII 205
I +V K ++ V+ P N ++ +D + I
Sbjct: 94 ITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDIT 153
Query: 206 NEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGED 265
+ + + + +N K KNV + D GG S+ + S G +D
Sbjct: 154 IKAEGSGVLFLEQENFK-NKNVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKD 208
Query: 266 FDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID 325
R+ D + +++ N +A L G
Sbjct: 209 LIIRV----GDALTDLNNGNLITNEQAESALN------------------------NGYM 240
Query: 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD 385
+ + + L + + + ++ +GG+ + +++ +
Sbjct: 241 KKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISK 298
Query: 386 FFNGKSLNLSINPDEAVAYG 405
+ + ++ N G
Sbjct: 299 TY-PNNSIITNNSQWTTCEG 317
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 80 IAEVYLGGKVSEA--VITVPA--YFNDSQRQATKDA------------GSIAGLNVLRII 123
I +V K ++ V+ P N ++ +D + I
Sbjct: 94 ITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDIT 153
Query: 124 NEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
+ + + + +N K KNV + D GG S+
Sbjct: 154 IKAEGSGVLFLEQENFK-NKNVAVIDFGGLNMGFSL 188
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 8e-11
Identities = 69/460 (15%), Positives = 141/460 (30%), Gaps = 128/460 (27%)
Query: 258 DTHLGGEDFDNR-LVTFFADEFKRKHK-KDILANTRAV---------RRLRTACERAKR- 305
D G + + +++ F D F KD+ +++ + A R
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 306 --TLSSSTEASLEI---DALHEGIDF-YSKI-TRARFEELCMDLFRQTLAPVERALNDA- 357
TL S E ++ + L F S I T R + ++ + +R ND
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQ 124
Query: 358 KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA-YGAAVQAAILSGD 416
K ++V R+ K L+ ++L L + P + V G SG
Sbjct: 125 VFAK---YNVS------RLQPYLK-LR-----QAL-LELRPAKNVLIDGVLG-----SGK 163
Query: 417 TS---SAIQDVLLVDVAP-----LSLG-IETAGGVMTKIVERNSRIPCKQQQTFTTYSDN 467
T + L+L + V+ + + +I +T+ SD+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDH 219
Query: 468 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRG------V--PKIEVTFDLDANGIL 519
+ + +++ + LL + P V K F+L IL
Sbjct: 220 SSNIKLRI---HSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLSCK-IL 269
Query: 520 NVSAKDSS------TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAED----------- 562
++ + I++ + L+ D++ +L + + +D
Sbjct: 270 -LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 563 ------DKQRERVAAKNKLESYAF-AVKQAAEDSGSKLSDADKTSVSQACS--------- 606
+ R+ +A + + + E S + L A+ + S
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 607 -ATLT--WLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQ 643
L+ W + K + ++ KLH+
Sbjct: 389 TILLSLIWFDV----IKSDVMV-----------VVNKLHK 413
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 8e-10
Identities = 108/700 (15%), Positives = 211/700 (30%), Gaps = 230/700 (32%)
Query: 28 FEDQKIQE-DIKHWPFTVVSDGGKPKIQVEYKGEIKKF--APEEISS------MVLTKMR 78
FED + D K V D K + K EI + + +S +L+K
Sbjct: 25 FEDAFVDNFDCKD-----VQDMPKSILS---KEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 79 EIAEVYLGGK-------VSEAVITVP-------AYFNDSQRQATKDAGSIAGLNVLRIIN 124
E+ + ++ + + T + + + + D A NV R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--- 133
Query: 125 EPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFND 184
L L L+ KNVLI + G GK T A
Sbjct: 134 LQPYLKLRQAL-LELRPAKNVLIDGVLG---------------SGK------TWVA---- 167
Query: 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIF--DLGGGTFDVSVL 242
L+V ++ + + IF +L +VL
Sbjct: 168 --------------LDVCL--------------SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 243 AIDEGSLFQVKS--TAGDTH-----LGGEDFDNRLVTFFADEFKRKHKKDIL-----ANT 290
+ + L+Q+ T+ H L L + ++ +L N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNA 256
Query: 291 RAVRRLRTACERAKRTLSSSTEASLEIDAL------HEGIDFYSK-ITRARFEEL---CM 340
+A +C + L ++ + D L H +D +S +T + L +
Sbjct: 257 KAWNAFNLSC----KILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 341 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIR-------------IPKIQKMLQDFF 387
D Q L P E + + ++ SIR K+ +++
Sbjct: 312 DCRPQDL-PRE-----VL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 388 NGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGI-------ETAG 440
N + P E + ++ + + L +
Sbjct: 364 N------VLEPAEYRKM--FDRLSVFPPS----------AHIPTILLSLIWFDVIKSDVM 405
Query: 441 GVMTKIVERNSRIPCKQQQTFTTYS--DNQNAVTIQVFEGERAMTKDNNLLGTFNL---- 494
V+ K+ + + ++Q +T S + +++ E E A+ + +++ +N+
Sbjct: 406 VVVNKLHKYSL---VEKQPKESTISIPSIYLELKVKL-ENEYALHR--SIVDHYNIPKTF 459
Query: 495 ---TGIPPAPRG---------VPKIEVT--FDLDANGILN---VSAKDSSTGKAERITIQ 537
IPP + IE L L+ + K A
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-----W 514
Query: 538 NDKGRLSKDDIDRMLAEAEKYK---AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLS 594
N G + L + + YK ++D + ER+ N + + + + E+ L
Sbjct: 515 NASGSILNT-----LQQLKFYKPYICDNDPKYERLV--NAILDF---LPKIEEN----LI 560
Query: 595 DADKTSVSQACSATLTWLEGNSLAEKEE--FEDRLKTLQQ 632
+ T + + +L ++E FE+ K +Q+
Sbjct: 561 CSKYTDLLRI-----------ALMAEDEAIFEEAHKQVQR 589
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 9e-10
Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 39/215 (18%)
Query: 203 RIINEPTAAALAYGLDKNLK----GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGD 258
+I+ +P L ++ E + D G GT + V+ +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR--VEEESFV 213
Query: 259 THLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318
+ G DF R+ A +K + +S +
Sbjct: 214 INKGTIDFYKRI----ASHVSKKSE------------------------GASITPRMIEK 245
Query: 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 378
L ++ T F++ + V + SI +++ GG I
Sbjct: 246 GLEYKQCKLNQKTVIDFKDEFYKEQDSLIEEVMSNFEITVGNINSIDRIIVTGGGANI-- 303
Query: 379 IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413
L ++ + + + G +L
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELL 337
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 27/194 (13%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTA 256
AGL + + +P A + ++ L+ D+G + + +L + L
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR-GDKPLAV----- 216
Query: 257 GDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE 316
L G+DF + F + E KRT +T + +
Sbjct: 217 RVLTLSGKDFTEAIARSFNLDLLA-------------------AEEVKRTYGMATLPTED 257
Query: 317 IDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALN--DAKLDKGSIHDVVLVGGSI 374
+ L + + + R + + + + R+L +L++ S L+GG
Sbjct: 258 EELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGS 317
Query: 375 RIPKIQKMLQDFFN 388
++ + +L D
Sbjct: 318 KLRGLASLLTDTLG 331
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 44/205 (21%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKN--VLIFDLGGGTFDVSVLAIDEGSLFQVKS 254
+ ++ + + A L EK+ V++ +LG + G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTT---PEKDRGVVVVNLGYNFTGLIA--YKNGVP---IK 230
Query: 255 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRT-----LSS 309
+ +G + V KD+ + + ER T +
Sbjct: 231 ISYVP-VGMKH-----VI-----------KDV---SAVLDTSFEESERLIITHGNAVYND 270
Query: 310 STEASLEIDALHEG------IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGS 363
E ++ L S I AR E+ M ++ VE + +
Sbjct: 271 LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREI-MSKSKKFFREVEAKIVEEGEIGI- 328
Query: 364 IHDVVLVGGSIRIPKIQKMLQDFFN 388
VVL GG +IP+I ++ + F
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVFK 353
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 655 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 100.0 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.97 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.97 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.96 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.95 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.94 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.91 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.9 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.88 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.88 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.83 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.82 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.74 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.59 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.55 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.51 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.5 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.47 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.46 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.39 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.26 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 99.17 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.15 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 98.89 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.52 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 98.42 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 98.41 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 98.38 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 98.38 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 98.25 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 98.24 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 98.22 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.22 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 98.05 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 97.98 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 97.9 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 97.88 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 97.82 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.64 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 97.49 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.32 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.24 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 96.85 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 96.77 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 96.37 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 96.21 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 96.14 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 96.01 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.99 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 95.98 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 95.92 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 95.63 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 95.63 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 95.54 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 95.47 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 95.42 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 95.42 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 95.37 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 95.36 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 95.33 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 95.17 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 94.82 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 94.55 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 94.35 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 92.74 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 92.49 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 91.58 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 91.34 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 90.19 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 90.15 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 88.59 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 87.77 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 87.61 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 86.36 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 86.04 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 83.04 | |
| 3qbx_A | 371 | Anhydro-N-acetylmuramic acid kinase; acetate and s | 82.66 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 82.22 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 81.65 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-94 Score=812.02 Aligned_cols=547 Identities=49% Similarity=0.800 Sum_probs=508.1
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.+||.||++++|||||++|+||.++...++|||+++. .+|.+.+.+ ++ ..++|+++++++|+++++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~ 125 (605)
T 4b9q_A 50 VGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKK 125 (605)
T ss_dssp ESHHHHHTTTTCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHhCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999984 566666654 45 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++
T Consensus 126 ~ae~~lg~~v~~~------------------------------------------------------------------- 138 (605)
T 4b9q_A 126 TAEDYLGEPVTEA------------------------------------------------------------------- 138 (605)
T ss_dssp HHHHHHTSCCCEE-------------------------------------------------------------------
T ss_pred HHHHHhCCCCCeE-------------------------------------------------------------------
Confidence 9999988777666
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|||||++|++.||+++++|++.|||+++++++||+|||++|+.... ..+.+++|||+||||||+
T Consensus 139 ---------------VITVPa~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~-~~~~~vlV~DlGGGT~Dv 202 (605)
T 4b9q_A 139 ---------------VITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGAFDI 202 (605)
T ss_dssp ---------------EEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSC-CSSEEEEEEEECSSCEEE
T ss_pred ---------------EEEECCCCCHHHHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhcc-CCCCEEEEEECCCCeEEE
Confidence 5566666778888888999999999999999999999999988754 256899999999999999
Q ss_pred EEEEEeC----CceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEE
Q psy3270 240 SVLAIDE----GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 315 (655)
Q Consensus 240 sv~~~~~----~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i 315 (655)
|++++.. + .++++++.|+.++||.+||++|++|+.++|..+++.++..+++.+.+|+.+||++|+.||......+
T Consensus 203 si~~~~~~~~~~-~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i 281 (605)
T 4b9q_A 203 SIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDV 281 (605)
T ss_dssp EEEEEEESSSCE-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred EEEEEecCCCCc-eEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEE
Confidence 9999987 6 9999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred EEccccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc
Q psy3270 316 EIDALHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS 391 (655)
Q Consensus 316 ~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 391 (655)
.++.+..+ .++..+|||++|+++++|+++++..+++++|+.+++...+|+.|+||||+||+|+|+++|++.| +.+
T Consensus 282 ~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f-g~~ 360 (605)
T 4b9q_A 282 NLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKE 360 (605)
T ss_dssp EEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-TSC
T ss_pred EEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-ccC
Confidence 88765432 5788999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred ccCCCCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCcee
Q psy3270 392 LNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAV 471 (655)
Q Consensus 392 v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~ 471 (655)
+..+.||++|||+|||++|+.+++. .+++.+.|++|+|||+++.+|.|.++||||++||++++.+|++..|+|+.+
T Consensus 361 ~~~~~nPdeaVA~GAai~a~~l~~~----~~~~~l~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v 436 (605)
T 4b9q_A 361 PRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAV 436 (605)
T ss_dssp CCSSSCTTTHHHHHHHHHHHHHHTS----SCSEEEECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEE
T ss_pred cCCCcChhHHHHHhHHHHHHHhcCC----CCceEEEeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceE
Confidence 8899999999999999999999983 578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHH
Q psy3270 472 TIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRM 551 (655)
Q Consensus 472 ~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~ 551 (655)
.|.+|||++..+.+|..||+|.|.++||.|.|.++|+|+|++|.||+|+|++.++.||++.+++|.+. .+||++|++++
T Consensus 437 ~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~ei~~~ 515 (605)
T 4b9q_A 437 TIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKM 515 (605)
T ss_dssp EEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTSCEEEEEEETTTCCEECCEEESC-CSCCHHHHHHH
T ss_pred EEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcCCcEEEEEEEecCCCcEEEEEecCC-CCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 47999999999
Q ss_pred HHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHH
Q psy3270 552 LAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 631 (655)
Q Consensus 552 ~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~ 631 (655)
+++++++.++|+..+++.++||+||+|+|++++.|++...++++++++++.+.++++++||+.+ +.++|++++++|+
T Consensus 516 ~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~ 592 (605)
T 4b9q_A 516 VRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELA 592 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHH
T ss_pred HHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986557899999999999999999999986 5889999999999
Q ss_pred HHHHHHHHHHHhc
Q psy3270 632 QTCTPIMTKLHQA 644 (655)
Q Consensus 632 ~~~~~i~~r~~e~ 644 (655)
+.+.|+..+++++
T Consensus 593 ~~~~~~~~~~~~~ 605 (605)
T 4b9q_A 593 QVSQKLMEIAQQQ 605 (605)
T ss_dssp HHTHHHHHHC---
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998763
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-94 Score=815.09 Aligned_cols=556 Identities=27% Similarity=0.441 Sum_probs=510.4
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++++.+||+||++++|||||++++|+.++..+++|||.++. .+|.+.+.+.+.|+.+.|+|++|++++|+++++
T Consensus 49 vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~ 128 (675)
T 3d2f_A 49 LGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKD 128 (675)
T ss_dssp ETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHH
T ss_pred ecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999985 578888888888877899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++
T Consensus 129 ~ae~~lg~~v~~~------------------------------------------------------------------- 141 (675)
T 3d2f_A 129 TVKQDTKANITDV------------------------------------------------------------------- 141 (675)
T ss_dssp HHHHHHCSCCCEE-------------------------------------------------------------------
T ss_pred HHHHHhCCCcceE-------------------------------------------------------------------
Confidence 9999988777666
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccc-c----CCCceEEEEEeCC
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN-L----KGEKNVLIFDLGG 234 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~-~----~~~~~vlV~D~Gg 234 (655)
|||||++|++.||+++++|++.||++++++++||+|||++|+.... . ..+.+++|||+||
T Consensus 142 ---------------VITVPa~f~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGG 206 (675)
T 3d2f_A 142 ---------------CIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGH 206 (675)
T ss_dssp ---------------EEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECS
T ss_pred ---------------EEEECCCCCHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCC
Confidence 5555666677788888888899999999999999999999987542 1 3567899999999
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceE
Q psy3270 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEAS 314 (655)
Q Consensus 235 gT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~ 314 (655)
||||+|++++.+| .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+....
T Consensus 207 GT~Dvsv~~~~~g-~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~ 285 (675)
T 3d2f_A 207 SSYTCSIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAP 285 (675)
T ss_dssp SCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEEecCC-eEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceE
Confidence 9999999999988 899999999999999999999999999999999999998999999999999999999999988888
Q ss_pred EEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccC
Q psy3270 315 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394 (655)
Q Consensus 315 i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~ 394 (655)
+.++++.++.++...|||++|+++|+|+++++..+|+++|+.+++++.+|+.|+||||+||+|+|+++|++.| +.++..
T Consensus 286 i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~ 364 (675)
T 3d2f_A 286 FSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLST 364 (675)
T ss_dssp EEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSCEEC
T ss_pred EEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCCccc
Confidence 9999888888999999999999999999999999999999999999999999999999999999999999999 677888
Q ss_pred CCCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCc----EEEEEEecCCccCcceeEEEEeecCCCce
Q psy3270 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGG----VMTKIVERNSRIPCKQQQTFTTYSDNQNA 470 (655)
Q Consensus 395 ~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~ 470 (655)
+.||++|||+|||++|+.+++ .++++++.+.|++|+|||+++.++ .+.+|||+|++||++++.+|++..++
T Consensus 365 ~~nPdeaVA~GAa~~a~~ls~--~~~v~~~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~--- 439 (675)
T 3d2f_A 365 TLNQDEAIAKGAAFICAIHSP--TLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDF--- 439 (675)
T ss_dssp CSCTTTHHHHHHHHHHHHTCS--SCCCCCCEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCE---
T ss_pred cCCcchHHHHHHHHHHHHhCC--CCcccceEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCc---
Confidence 999999999999999999998 456788999999999999999876 49999999999999999999886553
Q ss_pred eEEEE-EecCccccc-CCcceeeEEecCCCCCCCCCC-eEEEEEEeCCCeeEEEEEE----------eccCCCceeeeee
Q psy3270 471 VTIQV-FEGERAMTK-DNNLLGTFNLTGIPPAPRGVP-KIEVTFDLDANGILNVSAK----------DSSTGKAERITIQ 537 (655)
Q Consensus 471 ~~i~i-~~g~~~~~~-~~~~lg~~~i~~~~~~~~g~~-~i~v~~~~d~~g~l~v~~~----------~~~~~~~~~~~i~ 537 (655)
.+.+ |+|++.++. +|..||+|.|.|+||.|.|.+ +|+|+|++|.||+|+|++. ++.||+..+++|+
T Consensus 440 -~~~~~~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~ 518 (675)
T 3d2f_A 440 -SMAASYTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518 (675)
T ss_dssp -EEEEEESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEE
T ss_pred -eEEEEEcCCcccccccCceeeEEEecCcCCCCCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEe
Confidence 3444 779998887 999999999999999999985 9999999999999999995 7889999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhccC-
Q psy3270 538 NDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADKTSVSQACSATLTWLEGN- 615 (655)
Q Consensus 538 ~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~-~~~~~~e~~~l~~~l~e~~~WL~~~- 615 (655)
+...+||++|++++++++.+|..+|+.++++.++||+||+|+|++|+.|.+.. .++++++++++.+.++++++|||++
T Consensus 519 ~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~ 598 (675)
T 3d2f_A 519 AHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEG 598 (675)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 87668999999999999999999999999999999999999999999997644 7899999999999999999999976
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3270 616 SLAEKEEFEDRLKTLQQTCTPIMTKLHQAGG 646 (655)
Q Consensus 616 ~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~ 646 (655)
.++++++|++|+++|+++++||..|++++..
T Consensus 599 ~~~~~~~~~~~~~~l~~~~~~i~~r~~e~~~ 629 (675)
T 3d2f_A 599 FDSIKAKYIAKYEELASLGNIIRGRYLAKEE 629 (675)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999998743
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-93 Score=800.84 Aligned_cols=546 Identities=49% Similarity=0.807 Sum_probs=506.2
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.+||++|++++|||||++|+|+.++..++.|||.++ ..+|.+.+.+ +| +.|+|++|++++|+++++
T Consensus 50 vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~ 125 (605)
T 2kho_A 50 VGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKK 125 (605)
T ss_dssp ESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHH
T ss_pred ECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999997 5577776666 55 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++
T Consensus 126 ~ae~~l~~~v~~~------------------------------------------------------------------- 138 (605)
T 2kho_A 126 TAEDYLGEPVTEA------------------------------------------------------------------- 138 (605)
T ss_dssp HHHHHHCSCCCEE-------------------------------------------------------------------
T ss_pred HHHHHhCCCCcEE-------------------------------------------------------------------
Confidence 9999888766666
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|||||++|++.||+++++|++.||++++++++||+|||++|+.... ..+.++||||+||||||+
T Consensus 139 ---------------VitVPa~f~d~qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~-~~~~~vlV~DlGGGT~Dv 202 (605)
T 2kho_A 139 ---------------VITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDI 202 (605)
T ss_dssp ---------------EEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSS-SSEEEEEEEEECSSCEEE
T ss_pred ---------------EEEECCCCCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHhhhccc-CCCCEEEEEECCCCeEEE
Confidence 5556666777888888888999999999999999999999998653 246789999999999999
Q ss_pred EEEEEe----CCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEE
Q psy3270 240 SVLAID----EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 315 (655)
Q Consensus 240 sv~~~~----~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i 315 (655)
|++++. ++ .++++++.|+.++||++||+.|++|+.++|.++++.++..+++.+.+|+.+||++|+.||......+
T Consensus 203 si~~~~~~~~~g-~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i 281 (605)
T 2kho_A 203 SIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDV 281 (605)
T ss_dssp EEEEEECTTTSC-EEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEEecCCCC-eEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEE
Confidence 999998 56 8999999999999999999999999999999999988888899999999999999999999988888
Q ss_pred EEccccC---C-cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc
Q psy3270 316 EIDALHE---G-IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS 391 (655)
Q Consensus 316 ~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 391 (655)
.++.+.+ | .++..+|||++|+++++|+++++..+|+++|+.+++.+.+|+.|+||||+|++|+|+++|++.| +.+
T Consensus 282 ~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g~~ 360 (605)
T 2kho_A 282 NLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKE 360 (605)
T ss_dssp EEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-SSC
T ss_pred EecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-CCC
Confidence 8876554 2 4677899999999999999999999999999999999999999999999999999999999999 677
Q ss_pred ccCCCCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCcee
Q psy3270 392 LNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAV 471 (655)
Q Consensus 392 v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~ 471 (655)
+..+.||++|||+|||++|+.+++. ++++.+.|++|+|||+++.+|.|.++||+|+++|++++..|++..|+|+.+
T Consensus 361 ~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~l~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v 436 (605)
T 2kho_A 361 PRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAV 436 (605)
T ss_dssp CBCSSCTTTHHHHHHHHHHTTTTTS----CCCCCCSBCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEE
T ss_pred cCcCCCcchHHHHHHHHHHHHhcCC----ccCceEEeeeeeeccccccCCceEEEEecccccCccceEEEEecCCCceEE
Confidence 8889999999999999999999873 578899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHH
Q psy3270 472 TIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRM 551 (655)
Q Consensus 472 ~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~ 551 (655)
.|.+|||++..+.+|..||+|.|.++||.|.|.++|+|+|++|.||+|+|++.+..||+..+++|++. .+||++|++++
T Consensus 437 ~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~~i~~~ 515 (605)
T 2kho_A 437 TIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKM 515 (605)
T ss_dssp EEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECTT-SSCCHHHHHHH
T ss_pred EEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCCCceeEEEEEcCCCceeecccccc-cCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 78999999999
Q ss_pred HHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHH
Q psy3270 552 LAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 631 (655)
Q Consensus 552 ~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~ 631 (655)
++++.++..+|+..+++.++||+||+|+|++|+.|.+...++++++++++.+.++++++||+++ +.++|++++++|+
T Consensus 516 ~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~l~ 592 (605)
T 2kho_A 516 VRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELA 592 (605)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987557899999999999999999999964 8899999999999
Q ss_pred HHHHHHHHHHHh
Q psy3270 632 QTCTPIMTKLHQ 643 (655)
Q Consensus 632 ~~~~~i~~r~~e 643 (655)
+.++|+..|+++
T Consensus 593 ~~~~~~~~~~~~ 604 (605)
T 2kho_A 593 QVSQKLMEIAQQ 604 (605)
T ss_dssp TTCHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-88 Score=754.55 Aligned_cols=503 Identities=77% Similarity=1.147 Sum_probs=472.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|.+|++++.++|+||++++|||||++|+|+.++..++.|||.++..+|.+.+.+.+.++.+.|+|+++++++|+++++.
T Consensus 51 vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ 130 (554)
T 1yuw_A 51 IGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEI 130 (554)
T ss_dssp ETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred EcHHHHHhhhhChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999977899999999998888999999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|+.++|.++.++
T Consensus 131 ae~~lg~~v~~~-------------------------------------------------------------------- 142 (554)
T 1yuw_A 131 AEAYLGKTVTNA-------------------------------------------------------------------- 142 (554)
T ss_dssp HHHHHSSCCCEE--------------------------------------------------------------------
T ss_pred HHHHhCCCCCeE--------------------------------------------------------------------
Confidence 999988766666
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs 240 (655)
|||||++|++.||+++++|++.||++++++++||+|||++|+.......+..++|||+||||||+|
T Consensus 143 --------------VitVPa~f~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvs 208 (554)
T 1yuw_A 143 --------------VVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVS 208 (554)
T ss_dssp --------------EEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEE
T ss_pred --------------EEEECCCCCHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEE
Confidence 555666677788888888899999999999999999999999876433578899999999999999
Q ss_pred EEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Q psy3270 241 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDAL 320 (655)
Q Consensus 241 v~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~ 320 (655)
++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||......+.++++
T Consensus 209 v~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~ 287 (554)
T 1yuw_A 209 ILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287 (554)
T ss_dssp EEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTC
T ss_pred EEEEcCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeec
Confidence 9999888 899999999999999999999999999999999998888899999999999999999999999999999988
Q ss_pred cCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 321 HEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 321 ~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
.++.++...++|++|+++++|+++++..+|+++|+.+++.+.+|+.|+||||+|++|+|++.|++.|++.++..+.||++
T Consensus 288 ~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~ 367 (554)
T 1yuw_A 288 YEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDE 367 (554)
T ss_dssp SSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTT
T ss_pred cCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchh
Confidence 88889999999999999999999999999999999999999999999999999999999999999997788888999999
Q ss_pred HHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCc
Q psy3270 401 AVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGER 480 (655)
Q Consensus 401 ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~ 480 (655)
|||+|||++|+.+++...+.++++.+.|++|+|||+++.+|.+.++|++|+++|++++..|++..|+|+.+.|.+|||++
T Consensus 368 aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~ 447 (554)
T 1yuw_A 368 AVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 447 (554)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCc
Confidence 99999999999999854456788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhh
Q psy3270 481 AMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKA 560 (655)
Q Consensus 481 ~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~ 560 (655)
..+.+|..||+|.|.++||.|.|.++|+|+|++|.||+|+|++.++.||+..+++|+++.++||++|++++++++.+++.
T Consensus 448 ~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~ 527 (554)
T 1yuw_A 448 AMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKA 527 (554)
T ss_dssp SBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTT
T ss_pred cccccCcEEEEEEEeCCCCCcccccEEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999988778999999999999999999
Q ss_pred hcHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3270 561 EDDKQRERVAAKNKLESYAFAVKQAA 586 (655)
Q Consensus 561 ~D~~~~~~~~akN~LEs~iy~~r~~l 586 (655)
+|+..+++.++||+||+|+|.+|+.|
T Consensus 528 ~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 528 EDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp HHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988765
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-77 Score=656.36 Aligned_cols=457 Identities=51% Similarity=0.852 Sum_probs=417.1
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|.+|++++..+| ++++.+||+||++|. +..+| ..|+|+++++++|+++++.
T Consensus 49 vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~-------------------------~~~~g--~~~~~~ei~a~~L~~l~~~ 100 (509)
T 2v7y_A 49 VGEVAKRQAITNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEISAIILQYLKSY 100 (509)
T ss_dssp ESHHHHTTTTTCS-SEEECGGGTTTSCCC-------------------------EEETT--EEECHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhHHhCC-CcHHHHHHhcCCCcE-------------------------EEECC--EEEcHHHHHHHHHHHHHHH
Confidence 5899999999999 999999999999542 12244 4789999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|+.+++.++..+
T Consensus 101 ae~~l~~~~~~~-------------------------------------------------------------------- 112 (509)
T 2v7y_A 101 AEDYLGEPVTRA-------------------------------------------------------------------- 112 (509)
T ss_dssp HHHHHTSCCCEE--------------------------------------------------------------------
T ss_pred HHHHhCCCCCeE--------------------------------------------------------------------
Confidence 999887666655
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs 240 (655)
|||||++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++|||+||||||++
T Consensus 113 --------------VitvPa~~~~~qr~a~~~a~~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vlV~D~GgGT~Dvs 176 (509)
T 2v7y_A 113 --------------VITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE--EDQTILVYDLGGGTFDVS 176 (509)
T ss_dssp --------------EEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTGGGS--CSEEEEEEEECSSCEEEE
T ss_pred --------------EEEECCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHhhccC--CCCEEEEEECCCCeEEEE
Confidence 5566666778888888999999999999999999999999998764 678999999999999999
Q ss_pred EEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Q psy3270 241 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDAL 320 (655)
Q Consensus 241 v~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~ 320 (655)
++++.++ .++++++.|+.++||.+||+.|.+|+.++|..+++.++..+++.+.+|+.+||++|+.||......+.++.+
T Consensus 177 v~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~ 255 (509)
T 2v7y_A 177 ILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFI 255 (509)
T ss_dssp EEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEE
T ss_pred EEEEcCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 9999887 899999999999999999999999999999999998888889999999999999999999998888888765
Q ss_pred cC---C-cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCC
Q psy3270 321 HE---G-IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396 (655)
Q Consensus 321 ~~---~-~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~ 396 (655)
.+ | .++..+|||++|+++++|+++++..+|+++|+.+++...+++.|+||||+|++|+|+++|++.| +.++..+.
T Consensus 256 ~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~ 334 (509)
T 2v7y_A 256 SANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGV 334 (509)
T ss_dssp EEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCS
T ss_pred ccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCcCC
Confidence 43 2 4577899999999999999999999999999999998889999999999999999999999999 67788899
Q ss_pred CchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEE
Q psy3270 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVF 476 (655)
Q Consensus 397 ~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~ 476 (655)
||++|||+|||++|+.+++. .+++.+.|++|++||+++.++.+.++|+||+++|++++..|++..|+|+.+.|.+|
T Consensus 335 ~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~ 410 (509)
T 2v7y_A 335 NPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVL 410 (509)
T ss_dssp CTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSSEEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEE
T ss_pred CchhhhHhhHHHHHHHhcCC----ccCceEEEeeccccceeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEE
Confidence 99999999999999999873 46788999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHH
Q psy3270 477 EGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAE 556 (655)
Q Consensus 477 ~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~ 556 (655)
||++..+.+|..||+|.|.++||.|+|.++|+++|++|.||+|+|++.+..||+..+++|++. .+||++|++++++++.
T Consensus 411 ~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~~~ 489 (509)
T 2v7y_A 411 QGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSS-SGLSEEEIQRMIKEAE 489 (509)
T ss_dssp EESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECSS-CSCCSHHHHHHHHHHH
T ss_pred ecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEEEEEcCCCcEEEEEEEec-CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988 6799999999999999
Q ss_pred HhhhhcHHHHHHHHHHhhHH
Q psy3270 557 KYKAEDDKQRERVAAKNKLE 576 (655)
Q Consensus 557 ~~~~~D~~~~~~~~akN~LE 576 (655)
+|+.+|+..+++.++||+||
T Consensus 490 ~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 490 ENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp HSCGGGGGGGGCCCC-----
T ss_pred HhhhccHHHHHHHHHHhhcC
Confidence 99999999999999999987
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=475.14 Aligned_cols=332 Identities=80% Similarity=1.183 Sum_probs=310.0
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|..|+.++.++|.++++++||+||++++|+.++...+.|||.++..+|++.+.+.+.++...++|+++++++|+++++.
T Consensus 70 vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~ 149 (404)
T 3i33_A 70 IGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEI 149 (404)
T ss_dssp ETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred ecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998999999999999888999999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|+.+++.++.++
T Consensus 150 a~~~~~~~~~~~-------------------------------------------------------------------- 161 (404)
T 3i33_A 150 AEAYLGGKVHSA-------------------------------------------------------------------- 161 (404)
T ss_dssp HHHHHSSCCCEE--------------------------------------------------------------------
T ss_pred HHHHhccCCCcE--------------------------------------------------------------------
Confidence 999888766655
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccC--CCceEEEEEeCCceeE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK--GEKNVLIFDLGGGTFD 238 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~--~~~~vlV~D~GggT~d 238 (655)
|||||++|++.||+++++|++.||++++.+++||+|||++|+...... .+..++|||+||||||
T Consensus 162 --------------vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~d 227 (404)
T 3i33_A 162 --------------VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFD 227 (404)
T ss_dssp --------------EEEECTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEE
T ss_pred --------------EEEECCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEE
Confidence 666666778888888999999999999999999999999998875533 5788999999999999
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEc
Q psy3270 239 VSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318 (655)
Q Consensus 239 vsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~ 318 (655)
++++++.++ .++++++.++..+||.+||+.|.+++.++|..+++.++..+++.+.+|+..||++|+.||......+.++
T Consensus 228 vsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~ 306 (404)
T 3i33_A 228 VSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306 (404)
T ss_dssp EEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEE
T ss_pred EEEEEEeCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEe
Confidence 999999888 9999999999999999999999999999999999999888999999999999999999999999999998
Q ss_pred cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 319 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
.+.++.++...++|++|+++++|+++++..+|.++|+.+++...+++.|+|+||+|++|+|++.|++.|++.++..+.||
T Consensus 307 ~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p 386 (404)
T 3i33_A 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP 386 (404)
T ss_dssp EEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCT
T ss_pred eccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCH
Confidence 88888999999999999999999999999999999999999989999999999999999999999999987888899999
Q ss_pred hhHHHhHHHHHHHHHcC
Q psy3270 399 DEAVAYGAAVQAAILSG 415 (655)
Q Consensus 399 ~~ava~GAa~~a~~l~~ 415 (655)
++|||+|||++|+.+++
T Consensus 387 ~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 387 DEAVAYGAAVQAAILIG 403 (404)
T ss_dssp TTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999986
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-53 Score=455.80 Aligned_cols=330 Identities=33% Similarity=0.496 Sum_probs=294.8
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEc----CceeEeChhhhHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK----GEIKKFAPEEISSMVLTK 76 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~ev~a~~l~~ 76 (655)
+|..|++++.++|+++++++||+||++++++.++.. .+++.+...+|.+.+.+... ++.+.++|++|++++|++
T Consensus 60 ~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~ 137 (409)
T 4gni_A 60 YGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRR 137 (409)
T ss_dssp EHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCCGGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHH
T ss_pred EcHHHHHhhHhChHhhHHHHHHHhCCCccchhhhhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHH
Confidence 588999999999999999999999999998876654 45666677788888887765 356799999999999999
Q ss_pred HHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchh
Q psy3270 77 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFD 156 (655)
Q Consensus 77 l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~ 156 (655)
+++.|+.+++.++.++
T Consensus 138 l~~~a~~~~~~~~~~~---------------------------------------------------------------- 153 (409)
T 4gni_A 138 LVGAASEYLGKKVTSA---------------------------------------------------------------- 153 (409)
T ss_dssp HHHHHHHHHTSCCCEE----------------------------------------------------------------
T ss_pred HHHHHHHHhCCCCCeE----------------------------------------------------------------
Confidence 9999999888766655
Q ss_pred hHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHccccc-ccCCCceEEEEEeCCc
Q psy3270 157 VSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK-NLKGEKNVLIFDLGGG 235 (655)
Q Consensus 157 ~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~-~~~~~~~vlV~D~Ggg 235 (655)
|+|||++|++.||+++++|++.||++++.+++||+|||++|+... ....+.+++|||+|||
T Consensus 154 ------------------vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgG 215 (409)
T 4gni_A 154 ------------------VITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGS 215 (409)
T ss_dssp ------------------EEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSS
T ss_pred ------------------EEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 666666677888889999999999999999999999999998864 2346789999999999
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHHHHHHhcCCCCce
Q psy3270 236 TFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTLSSSTEA 313 (655)
Q Consensus 236 T~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~ 313 (655)
|||++++++.++ .++++++.++..+||.+||+.|.+++.+.|..+++ .++..+++.+.+|+.+||++|+.||.....
T Consensus 216 T~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~ 294 (409)
T 4gni_A 216 RSDVTVLASRSG-MYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNA 294 (409)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEE
T ss_pred ceEEEEEEEeCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCce
Confidence 999999999988 99999999999999999999999999999999888 788889999999999999999999999999
Q ss_pred EEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCC-cc
Q psy3270 314 SLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK-SL 392 (655)
Q Consensus 314 ~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v 392 (655)
.+.++.+.++.++...|||++|+++++|+++++..+|+++|+.+++...+|+.|+||||+|++|+|++.|++.|+.. .+
T Consensus 295 ~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v 374 (409)
T 4gni_A 295 SFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRI 374 (409)
T ss_dssp EEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEE
T ss_pred EEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCcccc
Confidence 99999888899999999999999999999999999999999999999889999999999999999999999999644 34
Q ss_pred ------cCCCCchhHHHhHHHHHHHHHcC
Q psy3270 393 ------NLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 393 ------~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
....||++|||+|||++|+....
T Consensus 375 ~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 375 LAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp ESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred ccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 57789999999999999987754
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=439.68 Aligned_cols=325 Identities=51% Similarity=0.834 Sum_probs=287.4
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|+++..++|+++++++||+||+.++|+.++..++.+||.++ ..+|.+.+.+ +| +.++|+++++++|+++++
T Consensus 50 ~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~ 125 (383)
T 1dkg_D 50 VGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKK 125 (383)
T ss_dssp ESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhhCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999987 4566666655 55 589999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.+++.++.++
T Consensus 126 ~a~~~~~~~~~~~------------------------------------------------------------------- 138 (383)
T 1dkg_D 126 TAEDYLGEPVTEA------------------------------------------------------------------- 138 (383)
T ss_dssp HHHHHHSSCCCEE-------------------------------------------------------------------
T ss_pred HHHHHhCCCCCeE-------------------------------------------------------------------
Confidence 9999887666666
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|+|||++|++.||+++++|++.||++++.+++||+|||++|+.... ..+.+++|||+||||||+
T Consensus 139 ---------------vitvP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lVvD~Gggttdv 202 (383)
T 1dkg_D 139 ---------------VITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDI 202 (383)
T ss_dssp ---------------EECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC--CCEEEEEEEEECSSCEEE
T ss_pred ---------------EEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC-CCCcEEEEEEcCCCeEEE
Confidence 5555666677888888899999999999999999999999987643 256789999999999999
Q ss_pred EEEEEe----CCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEE
Q psy3270 240 SVLAID----EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 315 (655)
Q Consensus 240 sv~~~~----~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i 315 (655)
++++.. ++ .++++++.++..+||.+||+.|.+++.+++..+++.++..+++.+.+|+..||++|+.||......+
T Consensus 203 sv~~~~~~~~~~-~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i 281 (383)
T 1dkg_D 203 SIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDV 281 (383)
T ss_dssp EEEEEEC----C-CCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEEecCCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 999987 45 7888888888899999999999999999999888888888899999999999999999999888888
Q ss_pred EEccccC---C-cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc
Q psy3270 316 EIDALHE---G-IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS 391 (655)
Q Consensus 316 ~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 391 (655)
.++.+.+ | .++..+|+|++|+++++|+++++.+.|.++|+.+++...+++.|+|+||+|++|+|+++|++.| +.+
T Consensus 282 ~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~-~~~ 360 (383)
T 1dkg_D 282 NLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKE 360 (383)
T ss_dssp EEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH-SSC
T ss_pred EEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh-CCC
Confidence 7765443 2 4566799999999999999999999999999999988889999999999999999999999999 567
Q ss_pred ccCCCCchhHHHhHHHHHHHHHc
Q psy3270 392 LNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 392 v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
+..+.||++|||+|||++|+.|+
T Consensus 361 v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 361 PRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp CBCSSCTTTHHHHHHHHHTTTTC
T ss_pred CCCCcChHHHHHHHHHHHHHhhC
Confidence 88889999999999999997653
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=318.11 Aligned_cols=216 Identities=47% Similarity=0.738 Sum_probs=206.3
Q ss_pred eEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCC
Q psy3270 424 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRG 503 (655)
Q Consensus 424 ~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g 503 (655)
+++.|++|+|+|+++.+|.|.+|||||++||++++.+|+|..|+|+.+.|.||||++..+.+|..||+|.|.|+||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHH
Q psy3270 504 VPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVK 583 (655)
Q Consensus 504 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r 583 (655)
.+.|+|+|.+|.||+|+|++.++.||+..+++|.+. .+||++||++++++++++..+|++.+++.++||.||+|+|.+|
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~-~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~ 159 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR 159 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT-CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeecc-ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886 5699999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3270 584 QAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQ 643 (655)
Q Consensus 584 ~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 643 (655)
+.|.+...++++++++++.+.++++++||+++ +.++|++++++|++.+.|+..|+++
T Consensus 160 ~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 160 KQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99987557899999999999999999999987 7899999999999999999999887
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=301.56 Aligned_cols=214 Identities=31% Similarity=0.529 Sum_probs=204.0
Q ss_pred eecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCCCe
Q psy3270 427 VDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPK 506 (655)
Q Consensus 427 ~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~ 506 (655)
.|++|+|||+++.+|.|.+|||+|++||++++.+|+|..|+|+.+.|.+|||++..+.+|..||+|.|.|+||+|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3270 507 IEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAA 586 (655)
Q Consensus 507 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 586 (655)
|+|+|.+|.||+|+|++.+..||+..+++|... .+||+++++++++++.+|..+|+..+++.++||+||+|+|.+|+.|
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~-~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l 159 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL 159 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCC-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEec-cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 5699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 587 EDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 587 ~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
.+...++++++++++.+.++++++||+++ +.++|++++++|++++.||..|+++.
T Consensus 160 ~~~~~~~~~~~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~~~~~i~~r~~~~ 214 (227)
T 1u00_A 160 AADAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQ 214 (227)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87557899999999999999999999964 58999999999999999999987653
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=296.97 Aligned_cols=220 Identities=25% Similarity=0.373 Sum_probs=182.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..||+++++|++.||++++.+++||+|||++|+.... .+.+++|||+||||||+++++... .+
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~aG~~~~~li~ep~Aaa~~~~~~~~--~~~~~lVvDiGggttdvsv~~~~~--~~-- 170 (344)
T 1jce_A 97 RVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVE--EPSGNMVVDIGGGTTEVAVISLGS--IV-- 170 (344)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHTTCCTT--SSSCEEEEEECSSCEEEEEEETTE--EE--
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCeEeccCCHHHHHHhcCCCCC--CCceEEEEEeCCCeEEEEEEEcCC--EE--
Confidence 568888999999999999999999999999999999999999987643 567899999999999999997532 22
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc------eEEEEc--cccCCc
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE------ASLEID--ALHEGI 324 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~------~~i~i~--~~~~~~ 324 (655)
..++..+||.+||+.|.+++.+++. .++. +..||++|+.|+.... ..+.++ .+.++.
T Consensus 171 --~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 235 (344)
T 1jce_A 171 --TWESIRIAGDEMDEAIVQYVRETYR----VAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGL 235 (344)
T ss_dssp --EEEEESCSHHHHHHHHHHHHHHHHC----EECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTE
T ss_pred --eeCCCCccChhHHHHHHHHHHHHhC----cccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCC
Confidence 2355789999999999999977653 2221 3569999999987542 244443 344666
Q ss_pred ceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCc-ceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhH
Q psy3270 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSI-HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEA 401 (655)
Q Consensus 325 ~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i-~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~a 401 (655)
+..++++|++|+++++|+++++.+.|.++|+.++.. .+.+ +.|+|+||+|++|+|+++|++.| +.++..+.||+++
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~a 314 (344)
T 1jce_A 236 PRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTA 314 (344)
T ss_dssp EEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTTTH
T ss_pred ceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHH-CCCccccCChHHH
Confidence 778899999999999999999999999999987532 2224 68999999999999999999999 5678888899999
Q ss_pred HHhHHHHHHHHHc
Q psy3270 402 VAYGAAVQAAILS 414 (655)
Q Consensus 402 va~GAa~~a~~l~ 414 (655)
||+||+++++.++
T Consensus 315 va~Gaa~~a~~~~ 327 (344)
T 1jce_A 315 VAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHGGGCHH
T ss_pred HHHHHHHHHhChH
Confidence 9999999997554
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=259.92 Aligned_cols=165 Identities=55% Similarity=0.843 Sum_probs=154.3
Q ss_pred ccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCC
Q psy3270 421 IQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPA 500 (655)
Q Consensus 421 ~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 500 (655)
...+.+.|++|+|||+++.+|.|.+|||||++||++++.+|+|..|+|+.+.|.+|||++..+.+|..||+|.|.|+||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHH
Q psy3270 501 PRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAF 580 (655)
Q Consensus 501 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 580 (655)
|+|.++|+|+|++|.||+|+|++.++.||++.+++|.+. .+||++|++++++++++++++|++.+++.++||+||+|+|
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy 175 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIH 175 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy3270 581 AVKQAA 586 (655)
Q Consensus 581 ~~r~~l 586 (655)
.+|+.|
T Consensus 176 ~~~~~l 181 (182)
T 3n8e_A 176 DTETKM 181 (182)
T ss_dssp CCSCCC
T ss_pred HHHHhh
Confidence 998755
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=236.91 Aligned_cols=151 Identities=64% Similarity=1.001 Sum_probs=146.6
Q ss_pred eeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCCC
Q psy3270 426 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVP 505 (655)
Q Consensus 426 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 505 (655)
+.|++|+|+|+++.+|.|.+|||||++||++++.+|+|..|+|+.+.|.+|||++..+.+|..||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHH
Q psy3270 506 KIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576 (655)
Q Consensus 506 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 576 (655)
+|+|+|++|.||+|+|++.++.||+..+++|.++.++||++|++++++++++|+.+|+..+++.++||+||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987889999999999999999999999999999999886
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=237.33 Aligned_cols=151 Identities=71% Similarity=1.102 Sum_probs=142.1
Q ss_pred eeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCCC
Q psy3270 426 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVP 505 (655)
Q Consensus 426 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 505 (655)
+.|++|+|+|+++.+|.|.++||||++||++++.+|+|..|+|+.+.|.+|||++..+.+|.+||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHH
Q psy3270 506 KIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576 (655)
Q Consensus 506 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 576 (655)
+|+|+|++|.||+|+|++.++.||+..+++|.++.+.||++|++++++++++++++|++.+++.++||.||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987889999999999999999999999999999999875
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-30 Score=235.53 Aligned_cols=150 Identities=59% Similarity=0.934 Sum_probs=144.0
Q ss_pred eeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCCC
Q psy3270 426 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVP 505 (655)
Q Consensus 426 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 505 (655)
+.|++|+|+|+++.+|.|.++||||++||++++.+|+|..|+|+.+.|.+|||++..+.+|.+||+|.|.|+||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHH
Q psy3270 506 KIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576 (655)
Q Consensus 506 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 576 (655)
+|+|+|++|.||+|+|++.++.||+..+++|.+. .+||++|++++++++++++++|++.+++.++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988 889999999999999999999999999999998875
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=224.16 Aligned_cols=151 Identities=57% Similarity=0.966 Sum_probs=145.4
Q ss_pred eeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCCC
Q psy3270 426 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVP 505 (655)
Q Consensus 426 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 505 (655)
+.|++|+|||+++.+|.|.+||++|++||++++..|++..|+|+.+.|.+|||++..+.+|..||+|.|.++||+|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHH
Q psy3270 506 KIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576 (655)
Q Consensus 506 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 576 (655)
+|+|+|++|.||+|+|++.+..||+...++|....++||++|++++++++.+|+.+|+..+++.++||+||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999887789999999999999999999999999999999875
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=244.39 Aligned_cols=311 Identities=13% Similarity=0.095 Sum_probs=206.4
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCce-EEEecCCC--CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccC
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSE-AVITVPAY--FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 140 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~-~vitvP~~--f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~ 140 (655)
+.-.+-++..++++++.||..+|.++++ +++++|+. .-..... -. ...++...+-.+....++..+....+.
T Consensus 50 I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g~~~~i~s~~~----~~-~i~~~~~~i~~~di~~~i~~a~~~~~p 124 (419)
T 4a2a_A 50 IKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVI----ER-DFGEEKRSITLDILSEMQSEALEKLKE 124 (419)
T ss_dssp ESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECCTTCEEEEEEE----EE-ECCSSCEECCHHHHHHHHHHHHHHHSC
T ss_pred EEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcCCcCeEEEEEe----EE-EEeCCCCEECHHHHHHHHHHhhhhcCC
Confidence 4444555899999999999999999999 99999998 2100000 00 000011122222233333333322233
Q ss_pred CCeeEEEEeccccchhhHH-HHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHccc
Q psy3270 141 GEKNVLIFDLGGGTFDVSM-REIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217 (655)
Q Consensus 141 ~~~~~~~~d~g~~~~~~~l-~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~ 217 (655)
.+...+-+-+..+.++..- .....-..|. .+.-.+++.| ....+.+.+|++.|||++..++.||+|||++|+.
T Consensus 125 ~d~~~l~~~p~~f~vDg~~~i~~P~Gm~g~~l~~~v~~v~~~----~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~ 200 (419)
T 4a2a_A 125 NGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVP----LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLT 200 (419)
T ss_dssp TTEEEEEEEEEEEEETTTEEESCCTTCEESEEEEEEEEEEEE----HHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCC
T ss_pred CCCEEEEEEeeEEEECCccCcCCCCCCcccEEEEEEEEEEEe----HHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhc
Confidence 3333332222222222100 0000000111 1233445554 4567889999999999999999999999999876
Q ss_pred ccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Q psy3270 218 DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLR 297 (655)
Q Consensus 218 ~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (655)
... .+.+++|+|+||||||+++++ +| .+.. .++.++||++||+.|...+. ...
T Consensus 201 ~~~--~~~gv~vvDiGggttdisi~~--~g-~~~~---~~~i~~GG~~it~dIa~~l~-------------------~~~ 253 (419)
T 4a2a_A 201 TPE--KDRGVVVVNLGYNFTGLIAYK--NG-VPIK---ISYVPVGMKHVIKDVSAVLD-------------------TSF 253 (419)
T ss_dssp HHH--HHHCEEEEEECSSSEEEEEEE--TT-EEEE---EEEESCCHHHHHHHHHHHHT-------------------CCH
T ss_pred ccc--ccCCEEEEEECCCcEEEEEEE--CC-EEEE---EEecccHHHHHHHHHHHHHC-------------------CCH
Confidence 543 456899999999999999987 45 3332 23478999999999987541 124
Q ss_pred HHHHHHHHhcCCC-----CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCC------CCCCcce
Q psy3270 298 TACERAKRTLSSS-----TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL------DKGSIHD 366 (655)
Q Consensus 298 ~~~e~~K~~ls~~-----~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~------~~~~i~~ 366 (655)
..||++|+.++.. ....+.++...+ .....++|++|.++++|++++++..|++.|+.++. ....++.
T Consensus 254 ~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~ 331 (419)
T 4a2a_A 254 EESERLIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGG 331 (419)
T ss_dssp HHHHHHHHHHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTC
T ss_pred HHHHHHHHHhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCE
Confidence 5799999998742 345677765533 35678999999999999999999999999999987 3456899
Q ss_pred EEEecCccchHHHHHHHHhhhCCCcccCC-----------------CCchhHHHhHHHHHHHHH
Q psy3270 367 VVLVGGSIRIPKIQKMLQDFFNGKSLNLS-----------------INPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 367 ViLvGG~s~~p~v~~~l~~~f~~~~v~~~-----------------~~p~~ava~GAa~~a~~l 413 (655)
|+|+||+|++|++++++++.| +.+++.. .+|.++++.|.++++...
T Consensus 332 IvLtGG~s~lpgl~e~~~~~~-g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 332 VVLTGGGAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp EEEESGGGGSTTHHHHHHHHH-TSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred EEEECchhchhhHHHHHHHHH-CCCeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHhhc
Confidence 999999999999999999999 4544322 389999999999988543
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=228.01 Aligned_cols=227 Identities=21% Similarity=0.239 Sum_probs=153.9
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCC------------------HHHHHHHHHHHHHcCCcceeecChHHHHHHHccccc
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFN------------------DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK 219 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~------------------~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~ 219 (655)
.+...++.+++.++.++++++|..=. ....+++++|++.||+++..++.||+|||++|+...
T Consensus 106 ~i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~ 185 (377)
T 2ych_A 106 AVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARL 185 (377)
T ss_dssp HHHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHH
T ss_pred HHHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhc
Confidence 34445667777777778887762111 122488999999999999999999999999986543
Q ss_pred ccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Q psy3270 220 NLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 299 (655)
Q Consensus 220 ~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (655)
....+.+++|+|+||||||+++++ .| ... ..++..+||.+||+.|.+.+ +.+ ...
T Consensus 186 ~~~~~~~~~vvDiGggttdi~i~~--~g-~~~---~~~~~~~GG~~i~~~i~~~~--------~~~-----------~~~ 240 (377)
T 2ych_A 186 AEEPDRVFLVLDIGAESTSLVLLR--GD-KPL---AVRVLTLSGKDFTEAIARSF--------NLD-----------LLA 240 (377)
T ss_dssp HTSTTCEEEEEEECSSCEEEEEEE--TT-EEE---EEEEESCSHHHHHHHHHHHT--------TCC-----------HHH
T ss_pred ccccCCeEEEEEECCCcEEEEEEE--CC-EEE---EEEeeechHHHHHHHHHHHh--------CCC-----------HHH
Confidence 223467899999999999999997 34 222 23457899999999997632 222 347
Q ss_pred HHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHc--CCCCCCcceEEEecCccchH
Q psy3270 300 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDA--KLDKGSIHDVVLVGGSIRIP 377 (655)
Q Consensus 300 ~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p 377 (655)
||++|+.++.............+-......++|++|+++++++++++...|++.|+.. +.....++.|+|+||+|++|
T Consensus 241 aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p 320 (377)
T 2ych_A 241 AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR 320 (377)
T ss_dssp HHHHHHHTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGST
T ss_pred HHHHHhhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccch
Confidence 9999999875432111100000001134578999999999999999999999999863 55566799999999999999
Q ss_pred HHHHHHHhhhCCCcccCC--------------------CCchhHHHhHHHHHH
Q psy3270 378 KIQKMLQDFFNGKSLNLS--------------------INPDEAVAYGAAVQA 410 (655)
Q Consensus 378 ~v~~~l~~~f~~~~v~~~--------------------~~p~~ava~GAa~~a 410 (655)
++++.+++.| +.++... .+|..++|.|+|+++
T Consensus 321 ~l~~~l~~~l-~~~v~~~~P~~~v~~~~~~~~~~~l~~~~p~~a~a~Glal~~ 372 (377)
T 2ych_A 321 GLASLLTDTL-GVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRG 372 (377)
T ss_dssp THHHHHHHHH-TSEEEECCGGGGSBCCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHh-CCCeEecCchhhcccCcccCCHHHHHhhhHHHHHHHHHHHcC
Confidence 9999999999 4443322 245567888888876
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=211.80 Aligned_cols=194 Identities=22% Similarity=0.363 Sum_probs=164.9
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCcee
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTF 237 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~ 237 (655)
.+.+.++.+.+.+...+++|+|++|...+|+.+.++++.+|+++..++.||+|++++++.. ..+|+|+|||||
T Consensus 79 ~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-------~~~viDiGggst 151 (272)
T 3h1q_A 79 ELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-------DGIVVDIGGGTT 151 (272)
T ss_dssp HHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-------SEEEEEECSSCE
T ss_pred HHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-------CEEEEEECCCcE
Confidence 5566777788888999999999999999999999999999999999999999999998753 259999999999
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy3270 238 DVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI 317 (655)
Q Consensus 238 dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i 317 (655)
+++++. .+ ... ......+||.+||+.+.+++. . -...+|++|+.++
T Consensus 152 ~~~~~~--~g-~~~---~~~~~~~Gg~~~~~~l~~~l~--------~-----------~~~~ae~~k~~~~--------- 197 (272)
T 3h1q_A 152 GIAVIE--KG-KIT---ATFDEPTGGTHLSLVLAGSYK--------I-----------PFEEAETIKKDFS--------- 197 (272)
T ss_dssp EEEEEE--TT-EEE---EECCBSCCHHHHHHHHHHHHT--------C-----------CHHHHHHHHHSST---------
T ss_pred EEEEEE--CC-EEE---EEecCCCcHHHHHHHHHHHhC--------C-----------CHHHHHHHHHhcC---------
Confidence 999986 44 222 335678999999999988762 1 1246889998875
Q ss_pred ccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCC
Q psy3270 318 DALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397 (655)
Q Consensus 318 ~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~ 397 (655)
+++++++++.++++++...+.+.++..+ +++.|+|+||+|++|++++.+++.| +.++..+.+
T Consensus 198 -------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l-~~~v~~~~~ 259 (272)
T 3h1q_A 198 -------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIH 259 (272)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH-SSCCBCCSS
T ss_pred -------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh-CCCccccCC
Confidence 6899999999999999999999998764 4778999999999999999999999 678888899
Q ss_pred chhHHHhHHHHHH
Q psy3270 398 PDEAVAYGAAVQA 410 (655)
Q Consensus 398 p~~ava~GAa~~a 410 (655)
|++++|+|||++|
T Consensus 260 p~~a~a~Gaal~a 272 (272)
T 3h1q_A 260 PLLVTPLGIALFG 272 (272)
T ss_dssp GGGHHHHHHHTTC
T ss_pred hHHHHHHHHHhcC
Confidence 9999999999864
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=180.88 Aligned_cols=119 Identities=59% Similarity=0.937 Sum_probs=109.5
Q ss_pred ccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCC
Q psy3270 421 IQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPA 500 (655)
Q Consensus 421 ~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 500 (655)
.+++.+.|++|++||+++.++.|.++|+||++||++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.++||+
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecC
Q psy3270 501 PRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQND 539 (655)
Q Consensus 501 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~ 539 (655)
|+|.++|+|+|++|.||+|+|++.++.||++..++|+++
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 132 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecC
Confidence 999999999999999999999999999999999999876
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=213.15 Aligned_cols=203 Identities=17% Similarity=0.110 Sum_probs=154.6
Q ss_pred ceEE--EEeCCCCCHHHHHHHHHHHHHc--------C------CcceeecChHHHHHHHcccccccC-CCceEEEEEeCC
Q psy3270 172 SEAV--ITVPAYFNDSQRQATKDAGSIA--------G------LNVLRIINEPTAAALAYGLDKNLK-GEKNVLIFDLGG 234 (655)
Q Consensus 172 ~~~v--itVPa~~~~~~r~~~~~a~~~A--------G------l~~~~li~Ep~Aaal~~~~~~~~~-~~~~vlV~D~Gg 234 (655)
.++| ++||++|+..||+++++++..+ | ++.+++++||+|||++|....... ...+++|+|+||
T Consensus 120 ~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGg 199 (346)
T 2fsj_A 120 VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGS 199 (346)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECS
T ss_pred eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCC
Confidence 5699 9999999999999999997776 4 356889999999999982211111 346789999999
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHHhcCCCCc
Q psy3270 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKK--DILANTRAVRRLRTACERAKRTLSSSTE 312 (655)
Q Consensus 235 gT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~e~~K~~ls~~~~ 312 (655)
||||++++++.++ . .+..+.++.++||.+|++.|.+++.+++ +. ++. ...+| . .
T Consensus 200 GTtDv~vi~~~~g-~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~----g~~~~i~---------~~~~e-------~--~ 255 (346)
T 2fsj_A 200 RTTDVLTINLMDM-E-PVVELSFSLQIGVGDAISALSRKIAKET----GFVVPFD---------LAQEA-------L--S 255 (346)
T ss_dssp SCEEEEEEETTTT-E-ECGGGCEEESCCHHHHHHHHHHHHHHHH----CCCCCHH---------HHHHH-------T--T
T ss_pred CcEEEEEEEecCC-E-EEeecCCCcchhHHHHHHHHHHHHHHHh----CCCcCCC---------HHHHh-------c--C
Confidence 9999999988666 4 4555567788999999999988776554 33 221 01122 1 1
Q ss_pred eEEEEccccCCcceEEeecHHHH-HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc
Q psy3270 313 ASLEIDALHEGIDFYSKITRARF-EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS 391 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~-e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 391 (655)
..+.+. +. .++++++ +++++++++++.+.|++.|+.+ .+.++.|+|+||+|++ +++.+++.|+...
T Consensus 256 ~~~~~~----g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~~~ 322 (346)
T 2fsj_A 256 HPVMFR----QK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTL 322 (346)
T ss_dssp SCEEET----TE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTTCB
T ss_pred CeEeEC----Cc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcCcE
Confidence 123332 22 3568999 9999999999999999999876 4568999999999999 9999999995322
Q ss_pred c-cCCCCchhHHHhHHHHHHH
Q psy3270 392 L-NLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 392 v-~~~~~p~~ava~GAa~~a~ 411 (655)
+ ....||++|+|+|+..++.
T Consensus 323 i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 323 VKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp CCCCTTTTTTHHHHHHHHHHH
T ss_pred EeccCCCcHHHHHHHHHHHHh
Confidence 2 1267999999999998763
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=201.44 Aligned_cols=227 Identities=17% Similarity=0.131 Sum_probs=164.9
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHH-cccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALA-YGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~-~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
...+|+|+|++|+..+|+++.+++ +.+|++.+.+++||+||+++ |........+.+.+|+|+||||||++++. +|
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~--~G- 183 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA--EG- 183 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE--TT-
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE--CC-
Confidence 467999999999999999999999 88999999999999999988 42111001122679999999999999985 44
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC-----------------
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----------------- 311 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----------------- 311 (655)
. .+....++..+||++||+.|.+++.+++. ...... -...+|++|+.++...
T Consensus 184 ~-~~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~ 252 (418)
T 1k8k_A 184 Y-VIGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKW 252 (418)
T ss_dssp E-ECGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGT
T ss_pred E-EcccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhccccccc
Confidence 2 22233355789999999999999865421 111111 1235777887775321
Q ss_pred ceEEEEccccCCcceEEeecHHHH---HHHhhHHH------HhhhhHHHHHHHHcC--CCCCCcceEEEecCccchHHHH
Q psy3270 312 EASLEIDALHEGIDFYSKITRARF---EELCMDLF------RQTLAPVERALNDAK--LDKGSIHDVVLVGGSIRIPKIQ 380 (655)
Q Consensus 312 ~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~v~ 380 (655)
...+.++....+.+..++++++.| |.++.|.+ ..+.+.|.++|..+. +....++.|+|+||+|++|+++
T Consensus 253 ~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~ 332 (418)
T 1k8k_A 253 IKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFG 332 (418)
T ss_dssp CEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHH
T ss_pred ceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHH
Confidence 134566655555666789999999 66666643 467888999998765 3345678899999999999999
Q ss_pred HHHHhhhCCC-----------------------cccCCCCchhHHHhHHHHHHH
Q psy3270 381 KMLQDFFNGK-----------------------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 381 ~~l~~~f~~~-----------------------~v~~~~~p~~ava~GAa~~a~ 411 (655)
++|++.|+.. ++..+.+|..++.+||+++|.
T Consensus 333 ~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 333 RRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 9998766211 122345778999999999985
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=195.25 Aligned_cols=214 Identities=18% Similarity=0.201 Sum_probs=153.8
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLF 250 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~ 250 (655)
..+++|+|++++..+|+++.+++ +.+|++.+.+++||+|||++++. .+.+|+|+||||||++.+. +| .
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-------~~~lVvDiG~gtt~v~~v~--~G-~- 169 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVTHNVPIY--EG-Y- 169 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-------SSEEEEEECSSCEEEEEEE--TT-E-
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC-------CeEEEEEcCCCceEEeEeE--CC-E-
Confidence 45999999999999999888765 88899999999999999999974 3679999999999998764 45 2
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhc----------------CCCCceE
Q psy3270 251 QVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTL----------------SSSTEAS 314 (655)
Q Consensus 251 ~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l----------------s~~~~~~ 314 (655)
.+....+...+||+++|+.|.+++..+. +......+.. .+|++|+.+ +......
T Consensus 170 ~~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~~-------~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~ 239 (375)
T 2fxu_A 170 ALPHAIMRLDLAGRDLTDYLMKILTERG---YSFVTTAERE-------IVRDIKEKLCYVALDFENEMATAASSSSLEKS 239 (375)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHHT---CCCCSHHHHH-------HHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEE
T ss_pred EeccceEEeccCHHHHHHHHHHHHHhcC---CCCCcHHHHH-------HHHHHHHHHHhhcccHHHHHHhhcccCccCeE
Confidence 2222234578999999999999987641 1111111112 244444443 2222334
Q ss_pred EEEccccCCcceEEeecHHHH---HHHhhHH-----HHhhhhHHHHHHHHcC--CCCCCcceEEEecCccchHHHHHHHH
Q psy3270 315 LEIDALHEGIDFYSKITRARF---EELCMDL-----FRQTLAPVERALNDAK--LDKGSIHDVVLVGGSIRIPKIQKMLQ 384 (655)
Q Consensus 315 i~i~~~~~~~~~~~~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~v~~~l~ 384 (655)
+.++ ++. .+.++++.| |.+++|. ...+.+.|.+.|..+. +....++.|+|+||+|++|+++++|+
T Consensus 240 ~~lp---dg~--~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~ 314 (375)
T 2fxu_A 240 YELP---DGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQ 314 (375)
T ss_dssp EECT---TSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHH
T ss_pred EECC---CCC--EEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHH
Confidence 4443 332 457888877 4455653 3557788888888653 22344678999999999999999999
Q ss_pred hhhCC-------CcccCCCCchhHHHhHHHHHHH
Q psy3270 385 DFFNG-------KSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 385 ~~f~~-------~~v~~~~~p~~ava~GAa~~a~ 411 (655)
+.++. .++..+.+|..++++||+++|.
T Consensus 315 ~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 315 KEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred HHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 98831 2344567999999999999997
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=180.85 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=140.5
Q ss_pred ceEEEEeCCC-CCHH--HH--HHHHHH------------HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCC
Q psy3270 172 SEAVITVPAY-FNDS--QR--QATKDA------------GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234 (655)
Q Consensus 172 ~~~vitVPa~-~~~~--~r--~~~~~a------------~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~Gg 234 (655)
..+|+++|.. |... |+ .++.+- ++.+++..+.+++||.||+++++... ..+..++|+|+||
T Consensus 96 ~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~aa~~~~~~~~--~~~~~~~vvDiGg 173 (320)
T 2zgy_A 96 VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQEL--DELDSLLIIDLGG 173 (320)
T ss_dssp EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHHHHHHHHS--CTTCEEEEEEECS
T ss_pred EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcHHHHHhhhccc--cCCCCEEEEEcCC
Confidence 3699999987 6531 21 222221 23445678899999999999987432 3567899999999
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-HHhcCCCCce
Q psy3270 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERA-KRTLSSSTEA 313 (655)
Q Consensus 235 gT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~-K~~ls~~~~~ 313 (655)
||||+++++ ++ .+.+....++.++||.+||+.|.+++.++ +.++. . ..+|++ |..- ...
T Consensus 174 gttd~~v~~--~g-~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i~--~-------~~ae~~lk~~~---~~~ 233 (320)
T 2zgy_A 174 TTLDISQVM--GK-LSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKGS--S-------YLADDIIIHRK---DNN 233 (320)
T ss_dssp SCEEEEEEE--GG-GCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGGG--H-------HHHHHHHHTTT---CHH
T ss_pred CeEEEEEEe--CC-eeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCCC--H-------HHHHHHHHHhh---hhh
Confidence 999999997 33 44455556778999999999999888532 22221 1 134444 3320 000
Q ss_pred EEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCC--c
Q psy3270 314 SLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK--S 391 (655)
Q Consensus 314 ~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~--~ 391 (655)
......+ ..-+++++.+++++.++++++.|.+.++.. .+++.|+|+||+|++ +++.+++.|+.. +
T Consensus 234 --~~~~~i~-----~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~ 300 (320)
T 2zgy_A 234 --YLKQRIN-----DENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL--ICDAVKKHTQIRDER 300 (320)
T ss_dssp --HHHHHSS-----SSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTHHH--HHHHHHHTSCCCGGG
T ss_pred --cccceec-----CchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChHHH--HHHHHHHHhCCCCCc
Confidence 0000000 012456777778888888888887777652 468999999999998 999999999532 5
Q ss_pred ccCCCCchhHHHhHHHHHH
Q psy3270 392 LNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 392 v~~~~~p~~ava~GAa~~a 410 (655)
+....||++|+|+||+++|
T Consensus 301 ~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 301 FFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp EECCSCGGGHHHHHHHHHH
T ss_pred eeeCCCcHHHHHHHHHHhc
Confidence 6778899999999999875
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=142.58 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=120.9
Q ss_pred cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 197 AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
++......|+||+|+++++..... ....|+|+|||+++++++. .+| .+......++...|+.+|++.+.+++.-
T Consensus 69 a~~~~~~~Vne~~aha~a~~~~~~----~~~~vl~lgG~~~~~~~~~-~~g-~~~~~~~~~~~~~g~G~f~d~~a~~l~~ 142 (276)
T 4ehu_A 69 NYSDADKQISELSCHARGVNFIIP----ETRTIIDIGGQDAKVLKLD-NNG-RLLNFLMNDKCAAGTGRFLDVMAKIIEV 142 (276)
T ss_dssp GCCSCSEECCHHHHHHHHHHHHST----TCCEEEEECSSCEEEEEEC-TTS-CEEEEEEECSCSTTSHHHHHHHHHHHTC
T ss_pred HhhCCCcccchHHHHHHHHHHhCC----CCCeEEEEcCCCceEEEEE-ecC-ceEEEEeCCCcCcchhhHHHHHHHHhcc
Confidence 556677889999999988765432 3457899999999999885 445 7787888888999999999999888743
Q ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceE------EeecHHHHHHHhhHHHHhhhhHH
Q psy3270 277 EFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFY------SKITRARFEELCMDLFRQTLAPV 350 (655)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~------~~itr~~~e~~~~~~~~~i~~~i 350 (655)
.+.... +..+....... +.+. ...|. ..-.....++++..+.+.+.+.+
T Consensus 143 ~~~~~~---------------------~~~~~a~~~~~--i~~~--~~~f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l 197 (276)
T 4ehu_A 143 DVSELG---------------------SISMNSQNEVS--ISST--CTVFAESEVISHLSENAKIEDIVAGIHTSVAKRV 197 (276)
T ss_dssp CGGGHH---------------------HHHTTCSSCCC--CCCC--SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhhH---------------------HHHhcCCCCCC--cCCc--cchhhhhHHHHhhhccccHHHHHHHHHHHHHHHH
Confidence 222110 00011111000 0000 00000 00001112455666666555555
Q ss_pred HHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 351 ERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 351 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
....... ..++.|+|+||.+++|.|++.+++.| +.++..+.+|++++|+|||++|....
T Consensus 198 ~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 198 SSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhc----ccCCeEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 5444433 34678999999999999999999999 78899999999999999999997544
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-15 Score=154.72 Aligned_cols=205 Identities=15% Similarity=0.203 Sum_probs=138.0
Q ss_pred ceEEEEeCCCCCHHHH-HHHHHHHHHcCC------------cceeecChHHHHHHHcccccccC----CCceEEEEEeCC
Q psy3270 172 SEAVITVPAYFNDSQR-QATKDAGSIAGL------------NVLRIINEPTAAALAYGLDKNLK----GEKNVLIFDLGG 234 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r-~~~~~a~~~AGl------------~~~~li~Ep~Aaal~~~~~~~~~----~~~~vlV~D~Gg 234 (655)
..+++++|..+...+| .++++++..++- ..+.+++||.||+++++...... .+..++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 4789999999988887 589998876543 56889999999999997653211 367899999999
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceE
Q psy3270 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEAS 314 (655)
Q Consensus 235 gT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~ 314 (655)
||||++++. ++ .+ +...++...+||..+++.+.+++.+++. +..+. .. ..++-+.
T Consensus 194 gTtd~~v~~--~~-~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~~-------~i~~g~~--------- 248 (355)
T 3js6_A 194 GTTIIDTYQ--NM-KR-VEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--PR-------MIEKGLE--------- 248 (355)
T ss_dssp SCEEEEEEE--TT-EE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--HH-------HHHSCCC---------
T ss_pred CcEEEEEEc--CC-EE-ccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--HH-------HHhcCCc---------
Confidence 999999983 44 22 1112233579999999999999876532 11111 10 1111110
Q ss_pred EEEccccCCcc--eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHH--HHHHHHhhhCCC
Q psy3270 315 LEIDALHEGID--FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK--IQKMLQDFFNGK 390 (655)
Q Consensus 315 i~i~~~~~~~~--~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~--v~~~l~~~f~~~ 390 (655)
+.. .+.+ -...+ .+.+++.++++++++++.|++.+.+ ++.++.|+|+||++.++. |.+.+++.|+..
T Consensus 249 ~~~----~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~ 319 (355)
T 3js6_A 249 YKQ----CKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA 319 (355)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC
T ss_pred ccc----ccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC
Confidence 000 0000 01112 2345666777777777777777653 456799999999999998 999999988432
Q ss_pred cccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 391 SLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 391 ~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.||.+|+|+|+..++..+.+
T Consensus 320 -----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 320 -----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp -----SSGGGHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHh
Confidence 79999999999999987654
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-15 Score=156.22 Aligned_cols=214 Identities=18% Similarity=0.195 Sum_probs=89.5
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLF 250 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~ 250 (655)
..+++|+|+.++..+|+++.+++ +.+|++.+.+++||.||+++++. .+.+|+|+|+|||+++.+. +| ..
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-------~~~lVVDiG~g~T~v~pv~--~G-~~ 174 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-------LTGVVVDSGDGVTHICPVY--EG-FS 174 (394)
T ss_dssp --------------------------------------------------------CCEEEECSSCEEEECEE--TT-EE
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-------ceEEEEEcCCCceEeeeeE--CC-EE
Confidence 45999999999999999999865 78899999999999999999875 3469999999999998774 34 21
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC----------------CceE
Q psy3270 251 QVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----------------TEAS 314 (655)
Q Consensus 251 ~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----------------~~~~ 314 (655)
+........+||+++|+.|.+++..+ .+......+. ..+|.+|+.+..- ....
T Consensus 175 -~~~~~~~~~~GG~~lt~~l~~~l~~~---~~~~~~~~~~-------~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~ 243 (394)
T 1k8k_B 175 -LPHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSADF-------ETVRMIKEKLCYVGYNIEQEQKLALETTVLVES 243 (394)
T ss_dssp -CSTTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTTH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEE
T ss_pred -cccceEEeeccHHHHHHHHHHHHHhc---CCCCCcHHHH-------HHHHHHHHhheeEecCHHHHHHhhccCCcCceE
Confidence 11112235799999999999988653 1111111122 2355555554321 1122
Q ss_pred EEEccccCCcceEEeecHHHHH---HHhhHH-----HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHH
Q psy3270 315 LEIDALHEGIDFYSKITRARFE---ELCMDL-----FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQ 384 (655)
Q Consensus 315 i~i~~~~~~~~~~~~itr~~~e---~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~ 384 (655)
+.+ .++. .+.++++.|. .+++|. ...+.+.|.+.|..+... ....+.|+|+||+|++|++.++|+
T Consensus 244 ~~l---pdg~--~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~ 318 (394)
T 1k8k_B 244 YTL---PDGR--IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLE 318 (394)
T ss_dssp EEC---TTSC--EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHH
T ss_pred EEC---CCCC--EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHH
Confidence 222 2333 4567777773 334442 234677888888877432 334578999999999999999999
Q ss_pred hhhCC-------------C---ccc--CCCCchhHHHhHHHHHHH
Q psy3270 385 DFFNG-------------K---SLN--LSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 385 ~~f~~-------------~---~v~--~~~~p~~ava~GAa~~a~ 411 (655)
+.+.. . ++. .+.+|..++.+|++++|.
T Consensus 319 ~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 319 RELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HHHHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred HHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 88732 0 222 255778999999999886
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=119.54 Aligned_cols=92 Identities=53% Similarity=0.891 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHH
Q psy3270 564 KQRERVAAKNKLESYAFAVKQAAED--SGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKL 641 (655)
Q Consensus 564 ~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~ 641 (655)
+++++.++||.||+|||.+++.|.+ ...+++++++.++.+.|+++.+||+++.+++.++|+.++++|++.+.||..|+
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999976 33789999999999999999999999877899999999999999999999999
Q ss_pred Hhc-C----------------CCCCCCCCCC
Q psy3270 642 HQA-G----------------GKGPDVEEVD 655 (655)
Q Consensus 642 ~e~-~----------------~~~~~~~~~~ 655 (655)
+++ | +.||++||||
T Consensus 83 y~~~~~~~~~~~~~~~~~~~~~~gp~~eevd 113 (113)
T 3lof_A 83 YQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113 (113)
T ss_dssp HHC----------------------------
T ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 975 1 1468999998
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-14 Score=146.31 Aligned_cols=192 Identities=20% Similarity=0.183 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHc-CC--cceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCC
Q psy3270 184 DSQRQATKDAGSIA-GL--NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTH 260 (655)
Q Consensus 184 ~~~r~~~~~a~~~A-Gl--~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~ 260 (655)
..+-+.+.+|.+.+ |+ ++-. .||.||++++....+ .+..++++||||||||++++.- +....... ..
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE--~eLGvaiIDmGGGTTd~sVf~~--G~lv~a~~----ip 436 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG--TTRPLAILDLGAGSTDASIINP--KGDIIATH----LA 436 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT--CCSSEEEEEECSSEEEEEEECT--TCCEEEEE----EE
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC--CcCCeEEEEeCCCcceEEEEcC--CcEEEEEE----ec
Confidence 34578899999999 99 7777 999999999988766 7889999999999999999863 32222222 45
Q ss_pred CCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC----------CCceEEEE--ccccCCcceEE
Q psy3270 261 LGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS----------STEASLEI--DALHEGIDFYS 328 (655)
Q Consensus 261 lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~----------~~~~~i~i--~~~~~~~~~~~ 328 (655)
.||++++..|..-|.- + =+..||++|+ +.. .+...+.+ +.+.. .
T Consensus 437 ~gG~~VT~DIA~~Lgt--------~----------d~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp-----~ 492 (610)
T 2d0o_A 437 GAGDMVTMIIARELGL--------E----------DRYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPP-----A 492 (610)
T ss_dssp CSHHHHHHHHHHHHTC--------C----------CHHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCG-----G
T ss_pred cchHHHHHHHHHHhCC--------C----------CHHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCc-----c
Confidence 8999999999765521 1 0235999999 642 12223444 22210 1
Q ss_pred eecH------HHHHHHhhHH--HHhhhhHHHHH----------HHHcCC-----CCCCcceEEEecCccchHHHHHHHHh
Q psy3270 329 KITR------ARFEELCMDL--FRQTLAPVERA----------LNDAKL-----DKGSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 329 ~itr------~~~e~~~~~~--~~~i~~~i~~~----------l~~~~~-----~~~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
.++| +++..+ +|. +++ ++.+++. |+..+. +..+|..|+|+||+|.++.+.++.++
T Consensus 493 ~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~ 570 (610)
T 2d0o_A 493 VFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTD 570 (610)
T ss_dssp GTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHH
T ss_pred eeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHH
Confidence 2333 444444 444 444 4444444 665443 23456899999999999999999999
Q ss_pred hhCCCccc-------CCCCchhHHHhHHHHHHH
Q psy3270 386 FFNGKSLN-------LSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 386 ~f~~~~v~-------~~~~p~~ava~GAa~~a~ 411 (655)
.|+.-+++ ..-.|.+|+|.|.+++.+
T Consensus 571 iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 571 ALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp HTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred HhCcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 99541332 234899999999998764
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-14 Score=146.53 Aligned_cols=190 Identities=20% Similarity=0.186 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHc-CC--cceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCC
Q psy3270 186 QRQATKDAGSIA-GL--NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLG 262 (655)
Q Consensus 186 ~r~~~~~a~~~A-Gl--~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lG 262 (655)
+-+.+.+|.+.+ |+ ++-. .||.||++++....+ .+..++++||||||||++++.-.. ...... ...|
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE--~elGvaiIDmGgGTTd~sVf~~g~--lv~a~~----ip~g 440 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG--CAAPLAILDLGAGSTDAAIVNAEG--QITAVH----LAGA 440 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT--CCSSEEEEEECSSEEEEEEECSSS--CEEEEE----EECC
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC--CcCCeEEEEeCCCcceEEEEcCCc--EEEEEE----eccc
Confidence 456788999999 99 6666 999999999988766 788999999999999999996433 222222 3589
Q ss_pred cchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC----------CCceEEEE--ccccCCcceEEee
Q psy3270 263 GEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS----------STEASLEI--DALHEGIDFYSKI 330 (655)
Q Consensus 263 G~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~----------~~~~~i~i--~~~~~~~~~~~~i 330 (655)
|++++..|..-|.-. | +..||++|+ +.. .+...+.+ +.+.. ..+
T Consensus 441 G~~VT~DIA~~Lg~~-------d-----------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp-----~~~ 496 (607)
T 1nbw_A 441 GNMVSLLIKTELGLE-------D-----------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSP-----AVF 496 (607)
T ss_dssp HHHHHHHHHHHHTCS-------C-----------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCG-----GGT
T ss_pred hHHHHHHHHHHhCCC-------C-----------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCc-----cee
Confidence 999999997655211 0 235999999 642 12223444 22210 022
Q ss_pred cH------HHHHHHhhHH--HHhhhhHHHHH----------HHHcCCCC-----CCcceEEEecCccchHHHHHHHHhhh
Q psy3270 331 TR------ARFEELCMDL--FRQTLAPVERA----------LNDAKLDK-----GSIHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 331 tr------~~~e~~~~~~--~~~i~~~i~~~----------l~~~~~~~-----~~i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
+| +++..+ +|. +++ ++.+++. |+..+... .+|..|+|+||+|.++.+.++.++.|
T Consensus 497 ~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL 574 (607)
T 1nbw_A 497 AKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEAL 574 (607)
T ss_dssp TCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHH
T ss_pred eeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHh
Confidence 33 444333 444 444 4444444 77766533 35689999999999999999999999
Q ss_pred CCCccc-------CCCCchhHHHhHHHHHHH
Q psy3270 388 NGKSLN-------LSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 388 ~~~~v~-------~~~~p~~ava~GAa~~a~ 411 (655)
+.-+++ ..-.|.+|+|.|.+++.+
T Consensus 575 ~~~~VRiGrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 575 SHYGVVAGQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp HTTTCEEEECCGGGTSCSCCHHHHHHHHHHH
T ss_pred CcCCeEEecCCccccCCchHHHHHHHHHhhh
Confidence 431332 234899999999998653
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=140.32 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=139.0
Q ss_pred ceEEEEeCCCCCHH--HHHHHHHHHHHc--------C------CcceeecChHHHHHHHcccccccCCCceEEEEEeCCc
Q psy3270 172 SEAVITVPAYFNDS--QRQATKDAGSIA--------G------LNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGG 235 (655)
Q Consensus 172 ~~~vitVPa~~~~~--~r~~~~~a~~~A--------G------l~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~Ggg 235 (655)
..++++.|..+... +|+.+++....- | +..+.+++||.+|.+.+. . ...+..++|+|+|||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~-~--~~~~~~v~vvDiGgg 182 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ-E--NFKNKNVAVIDFGGL 182 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC-C--CCTTCEEEEEEECSS
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc-h--hhccCCEEEEEeCCC
Confidence 46889999987743 677777766521 2 134778999998887753 1 125788999999999
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEE
Q psy3270 236 TFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 315 (655)
Q Consensus 236 T~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i 315 (655)
|||++++. .+ .+ +....+...+||.++++.|.+++.+ .+++..+... .+|++|+. . ...
T Consensus 183 Ttd~~v~~--~g-~~-~~~~~~~~~~G~~~~~~~i~~~l~~---~~~g~~i~~~---------~~e~i~~~-g---~~~- 241 (329)
T 4apw_A 183 NMGFSLYR--NC-VV-NPSERFIEEHGVKDLIIRVGDALTD---LNNGNLITNE---------QAESALNN-G---YMK- 241 (329)
T ss_dssp CEEEEEEE--TT-EE-CGGGCEEESCCHHHHHHHHHTSSSS---CSSCSCTTSB---------TTTTCSSS-C---SSC-
T ss_pred cEEEEEEE--CC-EE-eeccccchhhHHHHHHHHHHHHHHh---hccCCCCCHH---------HHHHHHhc-C---Ccc-
Confidence 99999997 34 32 2223344679999999999887754 0333332211 24444432 1 010
Q ss_pred EEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 316 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
.+.+. ..++.+++++.+++.++++.+.+++. +.+++.++.|+|+||++.+ +.+.+++.|+ .++...
T Consensus 242 ------~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~-~~v~v~ 307 (329)
T 4apw_A 242 ------KGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYP-NNSIIT 307 (329)
T ss_dssp ------EECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHST-TCEECC
T ss_pred ------cCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcC-CCCEec
Confidence 01111 13456777777777777777776665 3455568999999999998 5699999994 456778
Q ss_pred CCchhHHHhHHHHHHHHHc
Q psy3270 396 INPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~ 414 (655)
.||.+|+|+|+..++....
T Consensus 308 ~~P~~a~a~G~~~~~~~k~ 326 (329)
T 4apw_A 308 NNSQWTTCEGLYKVAVAKY 326 (329)
T ss_dssp SSGGGHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhhh
Confidence 8999999999999886554
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-12 Score=110.63 Aligned_cols=91 Identities=43% Similarity=0.657 Sum_probs=71.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3270 565 QRERVAAKNKLESYAFAVKQAAED--SGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLH 642 (655)
Q Consensus 565 ~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~ 642 (655)
+|++.++||+||+|||.+++.|.+ ....++++++++|.+.++++.+||+++.+++.++|+.++++|++++.||..|++
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999976 336799999999999999999999876668999999999999999999999987
Q ss_pred hc-----C----------CCCCCCCCCC
Q psy3270 643 QA-----G----------GKGPDVEEVD 655 (655)
Q Consensus 643 e~-----~----------~~~~~~~~~~ 655 (655)
++ | |.+|++||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~ee~d 120 (120)
T 2p32_A 93 QSAGGAPPGAAPGGAAGGAGGPTIEEVD 120 (120)
T ss_dssp CC--------------------------
T ss_pred HhccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 53 1 1367899987
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-11 Score=104.98 Aligned_cols=77 Identities=43% Similarity=0.729 Sum_probs=67.6
Q ss_pred HHHHHhhHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 568 RVAAKNKLESYAFAVKQAAED--SGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 568 ~~~akN~LEs~iy~~r~~l~~--~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
+.++||+||+|||.+++.|.+ ...+++++++++|.+.++++.+||+++.+++.++|+.++++|++++.||..|+++.
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~ 80 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQS 80 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999973 33789999999999999999999986555788999999999999999999998853
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=127.10 Aligned_cols=224 Identities=19% Similarity=0.157 Sum_probs=142.2
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccC-CCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLK-GEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
-..+++|.|.......|+.+.+.+ +..|++.+.++.+|.+|+++.+...... ...+-+|+|+|+|+|+++.+. +|.
T Consensus 123 ~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~--~G~ 200 (427)
T 3dwl_A 123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVA--EGY 200 (427)
T ss_dssp GCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEE--TTE
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEE--CCE
Confidence 357999999999999999999987 7899999999999999999887542211 135679999999999999984 341
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc-----------eEEEE
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE-----------ASLEI 317 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~-----------~~i~i 317 (655)
.+. .......+||+++|+.|.+++..+... .. -...++.+|+.+..-.. ....+
T Consensus 201 ~l~--~~~~rl~~gG~~lt~~L~~lL~~~~~~------~~-------~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~ 265 (427)
T 3dwl_A 201 VIG--SSIKTMPLAGRDVTYFVQSLLRDRNEP------DS-------SLKTAERIKEECCYVCPDIVKEFSRFDREPDRY 265 (427)
T ss_dssp ECG--GGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----
T ss_pred Eeh--hhheeccccHHHHHHHHHHHHHHcCCC------ch-------hHHHHHHHHHhcCcccCCHHHHHHHhhcCcccc
Confidence 111 111124699999999998887543321 00 11235556665532110 00000
Q ss_pred c--cc--cCCcceEEeecHHHHH---HHhhHH------HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHH
Q psy3270 318 D--AL--HEGIDFYSKITRARFE---ELCMDL------FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 318 ~--~~--~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
. .+ .+|....+++..+.|. -++.|- ...+.+.|.+.|.++..+ +.-...|+|+||+|.+|++.++
T Consensus 266 ~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~R 345 (427)
T 3dwl_A 266 LKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNR 345 (427)
T ss_dssp CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHH
T ss_pred ceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHH
Confidence 0 01 2343345677777663 344542 234677777888765422 2224669999999999999999
Q ss_pred HHhhhC-------------------C--CcccCCCCchhHHHhHHHHHHH
Q psy3270 383 LQDFFN-------------------G--KSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 383 l~~~f~-------------------~--~~v~~~~~p~~ava~GAa~~a~ 411 (655)
|++.+. . .++..+.++..++=+|++++|.
T Consensus 346 L~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 346 LQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 987651 1 1223345667899999999985
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.1e-09 Score=113.06 Aligned_cols=93 Identities=17% Similarity=0.282 Sum_probs=74.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
.+++|.|.......|+.+.+.+ +..|++.+.++.+|.||+++++.. +-+|+|+|+|+|+++.+. .|..+
T Consensus 116 pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~-------tglVVDiG~g~T~vvPI~--~G~~l- 185 (498)
T 3qb0_A 116 PALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP-------NCLVVDIGHDTCSVSPIV--DGMTL- 185 (498)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS-------SEEEEEECSSCEEEEEEE--TTEEC-
T ss_pred ceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCC-------eEEEEEcCCCcEEEEEEe--CCEEc-
Confidence 6999999998899999999975 789999999999999999988752 249999999999999985 34111
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
........+||+++|+.|.+++.+
T Consensus 186 -~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 186 -SKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp -GGGCEEESCSHHHHHHHHHHHTTT
T ss_pred -cccceeccccHHHHHHHHHHHHHh
Confidence 111112469999999999998853
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-07 Score=101.12 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=77.2
Q ss_pred HHhcCCcc-----eEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeE
Q psy3270 165 VYLGGKVS-----EAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFD 238 (655)
Q Consensus 165 ~~~~~~~~-----~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~d 238 (655)
..|+.... .+++|.|..++...|+.|.+.+ +.-|+..+.++.++.+|++++|.. +-+|+|+|.++|+
T Consensus 187 ~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-------tglVVDiG~~~T~ 259 (593)
T 4fo0_A 187 KYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-------STCIVDVGDQKTS 259 (593)
T ss_dssp HTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS-------EEEEEEECSSCEE
T ss_pred HhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC-------ceEEEEeCCCcee
Confidence 45665443 4999999999999999988764 677999999999999999998753 4599999999999
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 239 VSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 239 vsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
++-+. +|..+ ....-...+||.++++.|.++|..
T Consensus 260 v~PV~--dG~~l--~~~~~rl~~GG~~lt~~L~~lL~~ 293 (593)
T 4fo0_A 260 VCCVE--DGVSH--RNTRLCLAYGGSDVSRCFYWLMQR 293 (593)
T ss_dssp EEEEE--SSCBC--GGGCEEESCCHHHHHHHHHHHHHH
T ss_pred eeeeE--CCEEe--hhheEEecccHHHHHHHHHHHHHh
Confidence 88765 33111 111112469999999999888754
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=104.89 Aligned_cols=86 Identities=56% Similarity=0.867 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEE
Q psy3270 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIF 148 (655)
Q Consensus 69 v~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~ 148 (655)
++..+.+.+..........-+-. ||++|++.||+++.+|+++|||+++++++||+|||++|+++.. ..+..++++
T Consensus 119 iL~~lk~~ae~~lg~~v~~~VIT----VPa~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~-~~~~~vlV~ 193 (605)
T 4b9q_A 119 VLKKMKKTAEDYLGEPVTEAVIT----VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVY 193 (605)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEE----ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSC-CSSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCeEEEE----ECCCCCHHHHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhcc-CCCCEEEEE
Confidence 34444444444443333332333 5999999999999999999999999999999999999998754 356789999
Q ss_pred eccccchhhHH
Q psy3270 149 DLGGGTFDVSM 159 (655)
Q Consensus 149 d~g~~~~~~~l 159 (655)
|+|||+++.++
T Consensus 194 DlGGGT~Dvsi 204 (605)
T 4b9q_A 194 DLGGGAFDISI 204 (605)
T ss_dssp EECSSCEEEEE
T ss_pred ECCCCeEEEEE
Confidence 99999999754
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-07 Score=103.40 Aligned_cols=64 Identities=88% Similarity=1.304 Sum_probs=58.9
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 96 VPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 96 vP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
||++|++.||+++.+|++.|||+++++++||+|||++|+++.....+...+++|+||++++.++
T Consensus 146 VPa~f~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv 209 (554)
T 1yuw_A 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSI 209 (554)
T ss_dssp ECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEE
Confidence 5999999999999999999999999999999999999998765556789999999999999754
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-07 Score=104.05 Aligned_cols=64 Identities=75% Similarity=1.187 Sum_probs=57.8
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 96 VPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 96 vP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
||+||++.||+++.+|++.|||+++++++||+|||++|+++.. ..+..++++|+|||+++.++.
T Consensus 142 VPa~f~d~qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~-~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 2kho_A 142 VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISII 205 (605)
T ss_dssp ECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSS-SSEEEEEEEEECSSCEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHhhhccc-CCCCEEEEEECCCCeEEEEEE
Confidence 5999999999999999999999999999999999999998653 256789999999999997543
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-07 Score=104.64 Aligned_cols=64 Identities=39% Similarity=0.684 Sum_probs=57.8
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccc-c----CCCeeEEEEeccccchhhHH
Q psy3270 96 VPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN-L----KGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 96 vP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~-~----~~~~~~~~~d~g~~~~~~~l 159 (655)
||++|++.||+++.+|+++|||+++++++||+|||+.|+++.. + ..+...+++|+|||+++.++
T Consensus 145 VPa~f~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv 213 (675)
T 3d2f_A 145 VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSI 213 (675)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEE
Confidence 7999999999999999999999999999999999999998653 2 34678999999999999754
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-07 Score=97.38 Aligned_cols=62 Identities=79% Similarity=1.230 Sum_probs=57.1
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 96 VPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 96 vP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
||++|++.||+++.+|++.|||+++++++||+|||+.|+++.. .+...+++|+|+++++.++
T Consensus 116 vPa~~~~~qr~a~~~a~~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vlV~D~GgGT~Dvsv 177 (509)
T 2v7y_A 116 VPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE--EDQTILVYDLGGGTFDVSI 177 (509)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTGGGS--CSEEEEEEEECSSCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHhhccC--CCCEEEEEECCCCeEEEEE
Confidence 5999999999999999999999999999999999999998753 6788999999999999754
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=9.3e-07 Score=94.21 Aligned_cols=64 Identities=89% Similarity=1.288 Sum_probs=58.2
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccC--CCeeEEEEeccccchhhHH
Q psy3270 96 VPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK--GEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 96 vP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~--~~~~~~~~d~g~~~~~~~l 159 (655)
||++|++.||+++.+|++.|||+++.+++||+|||++|+...... .+..++++|+||++++..+
T Consensus 165 vPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv 230 (404)
T 3i33_A 165 VPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSI 230 (404)
T ss_dssp ECTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEE
Confidence 599999999999999999999999999999999999999876544 6788999999999999743
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.5e-07 Score=94.31 Aligned_cols=88 Identities=30% Similarity=0.427 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhcccc-ccCCCeeEE
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK-NLKGEKNVL 146 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~-~~~~~~~~~ 146 (655)
.++..+...+..........-+-. ||++|++.||+++.+|++.|||+++++++||+|||++|+... ....+..++
T Consensus 133 ~~L~~l~~~a~~~~~~~~~~~vit----vPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vl 208 (409)
T 4gni_A 133 RYLRRLVGAASEYLGKKVTSAVIT----IPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIV 208 (409)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEE----ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEE----ECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEE
Confidence 455666666666554444333333 599999999999999999999999999999999999998865 446678999
Q ss_pred EEeccccchhhHH
Q psy3270 147 IFDLGGGTFDVSM 159 (655)
Q Consensus 147 ~~d~g~~~~~~~l 159 (655)
++|+||++++.++
T Consensus 209 v~D~GgGT~dvsv 221 (409)
T 4gni_A 209 VADLGGSRSDVTV 221 (409)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEECCCCceEEEE
Confidence 9999999999743
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=79.98 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=55.5
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
++++..+++.+...+.+.++..+. .+.|+++||.++.|.+++.+.+.+ +.++..+.+|+.+.|+|||++|....
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~~ 258 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKKA 258 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHhh
Confidence 344445555555555555543321 367999999999999999999999 67788887888899999999997643
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.5e-06 Score=88.20 Aligned_cols=63 Identities=76% Similarity=1.219 Sum_probs=56.3
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 96 VPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 96 vP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
||++|++.||+++.+|++.||++++.+++||+||++.|++... ..+...+++|+|+++++..+
T Consensus 142 vP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lVvD~Gggttdvsv 204 (383)
T 1dkg_D 142 VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISI 204 (383)
T ss_dssp BCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC--CCEEEEEEEEECSSCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC-CCCcEEEEEEcCCCeEEEEE
Confidence 5999999999999999999999999999999999999988643 35678999999999999743
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=97.90 E-value=9.6e-06 Score=84.29 Aligned_cols=89 Identities=30% Similarity=0.411 Sum_probs=73.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCee
Q psy3270 65 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKN 144 (655)
Q Consensus 65 ~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~ 144 (655)
.++++.+++|++++.. .+++ ...+|||+|++|++.||+++.+|++.||++++.+++||+||++.|+.+. ..+..
T Consensus 75 ~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~~~li~ep~Aaa~~~~~~~--~~~~~ 148 (344)
T 1jce_A 75 VALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNV--EEPSG 148 (344)
T ss_dssp HHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHTTCCT--TSSSC
T ss_pred HHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEeccCCHHHHHHhcCCCC--CCCce
Confidence 4667777777666542 1233 4789999999999999999999999999999999999999999998754 35678
Q ss_pred EEEEeccccchhhHH
Q psy3270 145 VLIFDLGGGTFDVSM 159 (655)
Q Consensus 145 ~~~~d~g~~~~~~~l 159 (655)
.+++|+|+++++..+
T Consensus 149 ~lVvDiGggttdvsv 163 (344)
T 1jce_A 149 NMVVDIGGGTTEVAV 163 (344)
T ss_dssp EEEEEECSSCEEEEE
T ss_pred EEEEEeCCCeEEEEE
Confidence 899999999999743
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.8e-06 Score=86.57 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=71.8
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEE--EecCCCCCHHHHHHHHHhhhhc--------C------Cceeeeccch
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAV--ITVPAYFNDSQRQATKDAGSIA--------G------LNVLRIINEP 126 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~v--itvP~~f~~~~r~~~~~a~~~a--------g------l~~~~~i~e~ 126 (655)
.+++++..++++..++..++...+.+ .++| |+||++|+..||+++.+++.-+ | +..+++++||
T Consensus 94 ~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep 172 (346)
T 2fsj_A 94 RLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172 (346)
T ss_dssp CTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETT
T ss_pred cccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccH
Confidence 56778888888888877653333334 5699 9999999999999999997765 4 3568899999
Q ss_pred hHHHHhhccccc-cC-CCeeEEEEeccccchhhHHH
Q psy3270 127 TAAALAYGLDKN-LK-GEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 127 ~Aaa~~~~~~~~-~~-~~~~~~~~d~g~~~~~~~l~ 160 (655)
+||++.| ++.. .. .+...+++|+|+++++..+.
T Consensus 173 ~AAa~~~-l~~~~~~~~~~~vlVvDIGgGTtDv~vi 207 (346)
T 2fsj_A 173 VGAALYL-LNQGIIEQQPGYGVVIDVGSRTTDVLTI 207 (346)
T ss_dssp HHHHHHH-HHHTSSCCCSSEEEEEEECSSCEEEEEE
T ss_pred HHHHHHh-hccccccccCCcEEEEECCCCcEEEEEE
Confidence 9999988 3221 22 23567999999999997543
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=77.64 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEE
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLI 147 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~ 147 (655)
+.+..+|+++++.++.+.+.++..+++++|.+|+..+|+.+.++++.+|+++..++.+|.|+++.++.. ..++
T Consensus 71 ~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-------~~~v 143 (272)
T 3h1q_A 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-------DGIV 143 (272)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-------SEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-------CEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999998764 2599
Q ss_pred Eeccccchhh
Q psy3270 148 FDLGGGTFDV 157 (655)
Q Consensus 148 ~d~g~~~~~~ 157 (655)
+|+|+++++.
T Consensus 144 iDiGggst~~ 153 (272)
T 3h1q_A 144 VDIGGGTTGI 153 (272)
T ss_dssp EEECSSCEEE
T ss_pred EEECCCcEEE
Confidence 9999999885
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=81.69 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=87.4
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLF 250 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~ 250 (655)
..+++|.|..+....|+.|.+.+ +..|++.+.++.+|.||+++++. ..+-+|+|+|+|+|+++.+. .| .
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl------~ttGLVVDiG~g~T~VvPV~--eG-~- 291 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI------STSTCVVNIGAAETRIACVD--EG-T- 291 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC------SSCEEEEEECSSCEEEEEEE--TT-E-
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC------CCceEEEcCCCceEEEEEEe--CC-E-
Confidence 47999999999999999999987 56899999999999999998864 23569999999999999874 34 1
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC
Q psy3270 251 QVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS 310 (655)
Q Consensus 251 ~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~ 310 (655)
.+........+||+++|+.|.+++...--......+.. . .=+..++.+|+.+..-
T Consensus 292 vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t--~---~e~eiVrdIKEk~CyV 346 (655)
T 4am6_A 292 VLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDS--K---HGWLLAERLKKNFTTF 346 (655)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTS--H---HHHHHHHHHHHHHCCC
T ss_pred EEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCC--c---chHHHHHHHHHheEEE
Confidence 11111112569999999999988865310000011111 1 1123477888887654
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=4.3e-05 Score=80.35 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=92.0
Q ss_pred HhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHHHHHHhC
Q psy3270 7 LSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLG 86 (655)
Q Consensus 7 ~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ae~~~~ 86 (655)
+....+|++++..+|+++++. . ...++ -.+.-.+...+...... ..++++++... ++..|+++++
T Consensus 52 ~g~i~d~~~~~~~ik~~~~~~--~----~~~~~---v~~~i~~~~~~~~~~~~--~~v~~~el~~~----i~~ea~~~~~ 116 (377)
T 2ych_A 52 EGMVAEPAALAQEIKELLLEA--R----TRKRY---VVTALSNLAVILRPIQV--PKMPLKEMEEA----VRWEAERYIP 116 (377)
T ss_dssp TTEESCHHHHHHHHHHHHHHH--T----CCCCE---EEEEECGGGCEEEEEEE--ECCCHHHHHHH----HHHHHGGGCS
T ss_pred CCCcCCHHHHHHHHHHHHHHc--C----CCcce---EEEEecCCcEEEEEEEC--CCCCHHHHHHH----HHHHHhhcCC
Confidence 445678889999999999861 0 00111 11122222222111111 34677776543 2457888999
Q ss_pred CCCceEEEecCCCCCHHH--------------------HHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEE
Q psy3270 87 GKVSEAVITVPAYFNDSQ--------------------RQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVL 146 (655)
Q Consensus 87 ~~i~~~vitvP~~f~~~~--------------------r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~ 146 (655)
.++.++|+.+|. .+.+ .+.+.++++.|||++..++.||.|++..|+.......+.+.+
T Consensus 117 ~~~~~~vid~~~--~~~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~ 194 (377)
T 2ych_A 117 FPIDEVVLDFAP--LTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFL 194 (377)
T ss_dssp SCC-CEEEEEEE--SSCGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEE
T ss_pred CChhHceEEEEE--eCCCCCCCCcceeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEE
Confidence 999999999973 2222 388999999999999999999999999997654334567889
Q ss_pred EEeccccchhhHH
Q psy3270 147 IFDLGGGTFDVSM 159 (655)
Q Consensus 147 ~~d~g~~~~~~~l 159 (655)
++|+|+++++..+
T Consensus 195 vvDiGggttdi~i 207 (377)
T 2ych_A 195 VLDIGAESTSLVL 207 (377)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEECCCcEEEEE
Confidence 9999999999754
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0032 Score=64.55 Aligned_cols=47 Identities=21% Similarity=0.054 Sum_probs=40.7
Q ss_pred cceEEEecC-ccchHHHHHHHHhhh-----CCCcccCCCCchhHHHhHHHHHH
Q psy3270 364 IHDVVLVGG-SIRIPKIQKMLQDFF-----NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 364 i~~ViLvGG-~s~~p~v~~~l~~~f-----~~~~v~~~~~p~~ava~GAa~~a 410 (655)
++.|+++|| .+..|.+++.|++.+ ++.++..+.+|..+-|+|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 345999999 899999999999997 34677778899999999999975
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0034 Score=62.58 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=53.1
Q ss_pred ecHHHHH-HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecC-ccchHHHHHHHHhhh--CCCcccCCCCchhHHHhH
Q psy3270 330 ITRARFE-ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGG-SIRIPKIQKMLQDFF--NGKSLNLSINPDEAVAYG 405 (655)
Q Consensus 330 itr~~~e-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~ava~G 405 (655)
.+++++. .++..+.+++..+...+.+..+ ++.|+++|| .+..|.+++.+++.+ .+.++..+.+|..+.|.|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 4555444 2333334444444333334443 446999999 899999999999984 467888889999999999
Q ss_pred HHHHH
Q psy3270 406 AAVQA 410 (655)
Q Consensus 406 Aa~~a 410 (655)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99864
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0017 Score=68.11 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHhCCC--CceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHhhccccccCCCeeE
Q psy3270 69 ISSMVLTKMREIAEVYLGGK--VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNV 145 (655)
Q Consensus 69 v~a~~l~~l~~~ae~~~~~~--i~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~ 145 (655)
....+++++.. +.++.. -..+++|+|++++..+|+++.+++ +.+|++.+.++++|+||++++|. ...
T Consensus 81 ~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-------~~~ 150 (375)
T 2fxu_A 81 DMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTG 150 (375)
T ss_dssp HHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-------SSE
T ss_pred HHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC-------CeE
Confidence 44555555542 234432 346999999999999999988875 88999999999999999999986 367
Q ss_pred EEEeccccchhh
Q psy3270 146 LIFDLGGGTFDV 157 (655)
Q Consensus 146 ~~~d~g~~~~~~ 157 (655)
+++|+|+++++.
T Consensus 151 lVvDiG~gtt~v 162 (375)
T 2fxu_A 151 IVLDSGDGVTHN 162 (375)
T ss_dssp EEEEECSSCEEE
T ss_pred EEEEcCCCceEE
Confidence 999999988874
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0027 Score=67.48 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHh-hcc-ccccCCCee
Q psy3270 70 SSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALA-YGL-DKNLKGEKN 144 (655)
Q Consensus 70 ~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~-~~~-~~~~~~~~~ 144 (655)
...+++++.. +.++. ....+|+|+|++|++.+|+++.+++ +.+|++.+.++++|+||++. |.. ....... .
T Consensus 89 ~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~ 164 (418)
T 1k8k_A 89 MERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-T 164 (418)
T ss_dssp HHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-C
T ss_pred HHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-e
Confidence 4445555542 23443 2457999999999999999999999 99999999999999999877 311 1111222 5
Q ss_pred EEEEeccccchhh
Q psy3270 145 VLIFDLGGGTFDV 157 (655)
Q Consensus 145 ~~~~d~g~~~~~~ 157 (655)
.+++|+|+++++.
T Consensus 165 glVvDiG~gtt~v 177 (418)
T 1k8k_A 165 GTVIDSGDGVTHV 177 (418)
T ss_dssp EEEEEESSSCEEE
T ss_pred EEEEEcCCCceEE
Confidence 6999999999885
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0065 Score=67.03 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=63.4
Q ss_pred eecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 329 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 329 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
.-+|.++..+++.+++.+.-.++..++...-....++.|.++||.++.+.+.+.+.+.| +.++..+ ...++.|+|||+
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~ 485 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAM 485 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHH
Confidence 44788876556666666665555554433222335788999999999999999999999 6777665 456799999999
Q ss_pred HHHHHcC
Q psy3270 409 QAAILSG 415 (655)
Q Consensus 409 ~a~~l~~ 415 (655)
.|+.-.+
T Consensus 486 lA~~a~G 492 (554)
T 3l0q_A 486 MGTVAAG 492 (554)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9987665
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0097 Score=65.39 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=61.2
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
..+++.+++.+.-.++..++..+.....++.|.++||+++.+.+.+++.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHhC
Confidence 5566666777766666777766544456788999999999999999999999 6777654 5678999999999976544
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0076 Score=65.36 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=55.3
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++++.+++.+.-.++..++........++.|.++||.++.+.+.+.+.+.| +.++..+..++.+.|+|||+.|+.-.+
T Consensus 360 ~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 344555555544444444433222234678999999999999999999999 788877655555699999999987655
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=64.16 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.+++.+++.+.-.+...++...-....++.|.++||+++.+.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 367 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 367 EMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHHHHHcC
Confidence 334555555544444444332211235789999999999999999999999 6777664 5667999999999987665
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.013 Score=63.63 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=57.1
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++++.+++.+.-.+...++...... .++.|.++||.++.+.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 368 ~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 368 HLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 3455556666555666665543333 5788999999999999999999999 6777655 4556999999999987655
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0089 Score=65.22 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=55.0
Q ss_pred cHHHHHHHhhHHHHhhhhHHHH---HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHH
Q psy3270 331 TRARFEELCMDLFRQTLAPVER---ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAA 407 (655)
Q Consensus 331 tr~~~e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa 407 (655)
+|.+ +++.+++.+.-.+.. .|++.+. .++.|.++||.++.+.+.+++.+.| +.++..+ .+.++.|+|||
T Consensus 395 ~~~~---l~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA 466 (515)
T 3i8b_A 395 TREN---LARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAA 466 (515)
T ss_dssp SHHH---HHHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHH
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHH
Confidence 4544 344455544433333 3444443 4688999999999999999999999 6777664 56678999999
Q ss_pred HHHHHHcC
Q psy3270 408 VQAAILSG 415 (655)
Q Consensus 408 ~~a~~l~~ 415 (655)
+.|+.-.+
T Consensus 467 ~lA~~a~G 474 (515)
T 3i8b_A 467 RQAAWVLS 474 (515)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99986554
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.014 Score=63.59 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=56.4
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcc-cCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL-NLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v-~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.+++.+++.+.-.+...++...- .. ++.|.++||+++.+.+.+.+.+.| +.++ .. ..+.++.|+|||+.|+.-.+
T Consensus 378 ~l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 378 QILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVK-PDAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEEC-CCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEe-cCCCCchHHHHHHHHHHHhC
Confidence 34555555555555555444332 33 788999999999999999999999 6777 55 36889999999999987665
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.015 Score=63.21 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=54.1
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCC-CCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKL-DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++++.+++.+.-.+...++...- ....++.|.++||.++.+.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 377 ~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 377 HFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHHHHHHHHHhC
Confidence 34445555554444443332210 1224688999999999999999999999 6777554 5678999999999987665
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.014 Score=63.93 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=53.6
Q ss_pred HhhHHHHhhhhHHHHHHH----HcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALN----DAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~----~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
+++.+++.+.-.++..++ ..+. .++.|.++||+++.+.+.+++.+.| +.++.++ ...++.|+|||+.|+.-
T Consensus 376 i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a 450 (526)
T 3ezw_A 376 IIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLA 450 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHH
Confidence 344444544433333333 3443 4688999999999999999999999 7787665 55678999999999877
Q ss_pred cC
Q psy3270 414 SG 415 (655)
Q Consensus 414 ~~ 415 (655)
.|
T Consensus 451 ~G 452 (526)
T 3ezw_A 451 VG 452 (526)
T ss_dssp TT
T ss_pred hC
Confidence 66
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.013 Score=64.05 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=43.0
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||.++.|.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 475 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAG 475 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcC
Confidence 4778999999999999999999999 6777654 5677999999999987665
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.029 Score=60.96 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=54.2
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCC-CCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKL-DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++++.+++.+.-.+...++...- ....++.|.++||.++.+.+.+.+.+.+ +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 371 ~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 371 HLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 33444555555444444443311 1234678999999999999999999999 6777654 4566999999999986655
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=95.42 E-value=0.018 Score=62.69 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=44.3
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||+++.+.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRA-ANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-SSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEec-CCCcchhHHHHHHHHHHhC
Confidence 4678999999999999999999999 6777654 5778999999999987665
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.016 Score=63.09 Aligned_cols=77 Identities=23% Similarity=0.250 Sum_probs=54.3
Q ss_pred cHHHHHHHhhHHHHhhhhHHHH---HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHH
Q psy3270 331 TRARFEELCMDLFRQTLAPVER---ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAA 407 (655)
Q Consensus 331 tr~~~e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa 407 (655)
+|.++ ++.+++.+.-.+.. .|++.+. .++.|.++||+++.+.+.+.+.+.| +.++..+.. .++.|+|||
T Consensus 371 ~~~~l---~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~~-~e~~alGaA 442 (508)
T 3ifr_A 371 TRGHL---WRALLEAVALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLAN-PLGSAVGAA 442 (508)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEEC-CSTHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecCC-CCchHHHHH
Confidence 45444 44444444333333 3344443 4688999999999999999999999 677766543 468899999
Q ss_pred HHHHHHcC
Q psy3270 408 VQAAILSG 415 (655)
Q Consensus 408 ~~a~~l~~ 415 (655)
+.|+.-.+
T Consensus 443 ~lA~~a~G 450 (508)
T 3ifr_A 443 WVAAIGGG 450 (508)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99987665
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.9 Score=45.81 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCcceeecChHHHHHHHcccccccC-CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 186 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK-GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 186 ~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
....+.++-+..|+++-.|=.|-+|.-.+.+...... .+...+|+|+|||+|.+++++ ++......+ .++|.-
T Consensus 91 ~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~~~S----l~lG~v 164 (315)
T 3mdq_A 91 KQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEILWKQS----FEIGGQ 164 (315)
T ss_dssp HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCEEEEEE----ESCCHH
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeEeeeEE----Eechhh
Confidence 3445555556678887655556666544444333222 245799999999999999986 332222222 568887
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 165 rl~e~f 170 (315)
T 3mdq_A 165 RLIDRF 170 (315)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 777654
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.022 Score=62.07 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=43.6
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||.++.+.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 3678999999999999999999999 6777654 5567999999999987655
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.035 Score=60.38 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=42.8
Q ss_pred c-ceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 364 I-HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 364 i-~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
+ +.|.++||.++.+.+.+.+.+.| +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred ccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 5 67999999999999999999999 6777654 4566999999999987655
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.082 Score=53.52 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+..+-+..|+++-.|-.|.+|...+.+...........+|+|+|||+|.+++++ ++ .+.. ....++|+.
T Consensus 98 N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~-~~~~---~~Sl~~G~v 171 (315)
T 1t6c_A 98 NAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GY-KVRE---VISLPIGIV 171 (315)
T ss_dssp THHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TT-EEEE---EEEECCCHH
T ss_pred CHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CC-ceee---EEEEeccHH
Confidence 44455555556789988777777777666655443322345799999999999999975 34 2211 112579999
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 172 ~l~e~~ 177 (315)
T 1t6c_A 172 NLTETF 177 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888776
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.05 Score=58.91 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.++.|.++||.++++.+.+.+.+.| +.++.... .++.|.|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecCC--ccHhHHHHHHHHHH
Confidence 4678999999999999999999999 67776542 68999999766644
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.46 Score=48.55 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCcceeecChHHHHHHHcccccccC---CCceEEEEEeCCceeEEEEEEE--eC--CceEEEEEecCCC
Q psy3270 187 RQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK---GEKNVLIFDLGGGTFDVSVLAI--DE--GSLFQVKSTAGDT 259 (655)
Q Consensus 187 r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~---~~~~vlV~D~GggT~dvsv~~~--~~--~~~~~v~~~~~~~ 259 (655)
...+.++-+..|+++-.|=.|-+|.-.+.+...... .....+|+|+|||+|.++++.- .. +...... ..
T Consensus 105 ~~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~----Sl 180 (343)
T 3cer_A 105 EEFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAF----SM 180 (343)
T ss_dssp HHHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEE----EE
T ss_pred HHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeE----EE
Confidence 344455555668875444444444433333322222 2356999999999999999753 11 1011111 25
Q ss_pred CCCcchHHHHH
Q psy3270 260 HLGGEDFDNRL 270 (655)
Q Consensus 260 ~lGG~~~d~~l 270 (655)
++|+..+.+.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 69999988876
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=2.6 Score=42.64 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=44.8
Q ss_pred HhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhC--CCcccCCC---CchhHHHhHHHHHHHHHcC
Q psy3270 344 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSI---NPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 344 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~ava~GAa~~a~~l~~ 415 (655)
+.+.+.+.++.+..+ ++.|+|+||.+....+++.+.+.+. +.++..+. --|.++++|+|.+.....+
T Consensus 230 ~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~~ 301 (330)
T 2ivn_A 230 AALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAG 301 (330)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhcC
Confidence 444444555555433 5679999999999999999998772 23444443 2357889998876544433
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.033 Score=58.54 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=9.9
Q ss_pred ceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhh
Q psy3270 90 SEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 157 (655)
Q Consensus 90 ~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~ 157 (655)
..+++|+|++++..+|+++.+.+ +.+|++.+.++++|+||++++|. ...+++|+|+++++.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-------~~~lVVDiG~g~T~v 166 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-------LTGVVVDSGDGVTHI 166 (394)
T ss_dssp --------------------------------------------------------CCEEEECSSCEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-------ceEEEEEcCCCceEe
Confidence 45899999999999999999965 78899999999999999999875 356788888887764
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.15 Score=54.83 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=52.7
Q ss_pred HHHhhHHHHh--hhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhh-hCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 336 EELCMDLFRQ--TLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDF-FNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 336 e~~~~~~~~~--i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~-f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
..+.+.+++. +.-.++..++...- .+.|.++||++++|...+.+.+. | +.++..+. ..++.|+|||+.|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~~-~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRP-DCAVYTAN-AHNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHST-TSEEEEES-SCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcC-CCeEEEcC-CCchHHHHHHHHhCc
Confidence 4555666653 44455566655431 26799999999999999999999 9 77887663 456889999999964
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=90.19 E-value=16 Score=36.44 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=32.2
Q ss_pred cceEEEecCccch-HHHHHHHHhhhC---------CCcccCCCCchhHHHhHHHHHH
Q psy3270 364 IHDVVLVGGSIRI-PKIQKMLQDFFN---------GKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 364 i~~ViLvGG~s~~-p~v~~~l~~~f~---------~~~v~~~~~p~~ava~GAa~~a 410 (655)
++.|+|.||.++. +.+.+.+++.+. ...+....-.+.+.++|||.++
T Consensus 261 P~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 261 LNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp CCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred CCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4779999998876 665555555441 1234445556789999999876
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=90.15 E-value=0.12 Score=52.47 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=60.2
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCC-CCHH--HH--HHH--------HHh----hhhcCCceeeecc
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAY-FNDS--QR--QAT--------KDA----GSIAGLNVLRIIN 124 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~-f~~~--~r--~~~--------~~a----~~~agl~~~~~i~ 124 (655)
..+++..+++.+ +.++. +.. .+.++ .+|+++|.. |... || .++ ..+ ++.+++..+.+++
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 367777777653 44432 211 22334 589999987 6541 11 111 111 4566778899999
Q ss_pred chhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 125 EPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 125 e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
||.||++.++. ....+...+++|+|+++++..+
T Consensus 148 e~~aa~~~~~~--~~~~~~~~~vvDiGggttd~~v 180 (320)
T 2zgy_A 148 ESIPAGYEVLQ--ELDELDSLLIIDLGGTTLDISQ 180 (320)
T ss_dssp SSHHHHHHHHH--HSCTTCEEEEEEECSSCEEEEE
T ss_pred CcHHHHHhhhc--cccCCCCEEEEEcCCCeEEEEE
Confidence 99999998763 2345678999999999999754
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=0.63 Score=50.44 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.++-+..|+++-.|=.+-+|.-.+.+...........+|+|+|||+|.+++.+ ++......+ .++|.-
T Consensus 97 N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~~~S----l~lG~v 170 (513)
T 1u6z_A 97 NATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPILVES----RRMGCV 170 (513)
T ss_dssp THHHHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEEEEEE----ESCCHH
T ss_pred CHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeeeEEEE----EeccHH
Confidence 34455555556679876544444455444444433332223799999999999999874 341222222 579998
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 171 rlte~f 176 (513)
T 1u6z_A 171 SFAQLY 176 (513)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887766
|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=10 Score=41.14 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=53.3
Q ss_pred HHHHHHHhhHHH-HhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC-CCchhHHHhHHHHH
Q psy3270 332 RARFEELCMDLF-RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS-INPDEAVAYGAAVQ 409 (655)
Q Consensus 332 r~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~-~~p~~ava~GAa~~ 409 (655)
+.++...++..+ +-+.+.+..+.+..+ ++.|+|.||.+....+++.+.+..+-..+..+ .--|.++++|+|++
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~tg-----~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~ 354 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLARTG-----ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAA 354 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHH
Confidence 445544444433 334445555555554 57799999999999999999876532233333 24589999999999
Q ss_pred HHHHcC
Q psy3270 410 AAILSG 415 (655)
Q Consensus 410 a~~l~~ 415 (655)
+....+
T Consensus 355 a~~~~g 360 (576)
T 3ven_A 355 VAVELG 360 (576)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 987655
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=87.61 E-value=0.33 Score=49.99 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=54.3
Q ss_pred eEEEecCCCCCHHHH-HHHHHhhhhcCC------------ceeeeccchhHHHHhhccccccC----CCeeEEEEecccc
Q psy3270 91 EAVITVPAYFNDSQR-QATKDAGSIAGL------------NVLRIINEPTAAALAYGLDKNLK----GEKNVLIFDLGGG 153 (655)
Q Consensus 91 ~~vitvP~~f~~~~r-~~~~~a~~~agl------------~~~~~i~e~~Aaa~~~~~~~~~~----~~~~~~~~d~g~~ 153 (655)
.+++++|..+...+| +++.++..-.+- ..+.+++||.||++.++++.... .+...+++|+|++
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 678999999888887 588888775443 57899999999999998754221 4678899999999
Q ss_pred chhhH
Q psy3270 154 TFDVS 158 (655)
Q Consensus 154 ~~~~~ 158 (655)
+++..
T Consensus 195 Ttd~~ 199 (355)
T 3js6_A 195 TTIID 199 (355)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 99863
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.36 E-value=1.8 Score=46.67 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcch
Q psy3270 186 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGED 265 (655)
Q Consensus 186 ~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~ 265 (655)
....+.++-+..|+++-.|=.|-+|.-.+.+....... ...+|+|+|||+|.++++. ++ .+.. ....++|.-.
T Consensus 102 ~~~fl~~i~~~tG~~ievIsG~EEA~l~~~gv~~~~~~-~~~lvvDIGGGStEl~~~~--~~-~~~~---~~Sl~lG~vr 174 (508)
T 3hi0_A 102 GPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQ-PDGIAGDLGGGSLELIDIK--DK-SCGE---GITLPLGGLR 174 (508)
T ss_dssp HHHHHHHHHHHHTSCEEECCHHHHHHHHHHHHHHHSSS-CEEEEEEECSSCEEEEEEE--TT-EECC---CEEESCCHHH
T ss_pred HHHHHHHHHHHHCCCeEEecHHHHHHHHHHHHHhcCCC-CCeEEEEeCCCceEEEEee--CC-eeee---EEEecceEEe
Confidence 34455555566788764444455554444444333222 2459999999999999986 33 2211 1125688877
Q ss_pred HHHH
Q psy3270 266 FDNR 269 (655)
Q Consensus 266 ~d~~ 269 (655)
+.+.
T Consensus 175 l~e~ 178 (508)
T 3hi0_A 175 LSEQ 178 (508)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 7653
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=0.27 Score=51.82 Aligned_cols=91 Identities=9% Similarity=-0.000 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCceEEE-ecCCCC----------------------------CHHHHHHHHHhhhhcC
Q psy3270 66 PEEISSMVLTKMREIAEVYLGGKVSEAVI-TVPAYF----------------------------NDSQRQATKDAGSIAG 116 (655)
Q Consensus 66 ~~ev~a~~l~~l~~~ae~~~~~~i~~~vi-tvP~~f----------------------------~~~~r~~~~~a~~~ag 116 (655)
+.++...-+..+.+.|... ..+....++ .+|-.| ...-.+.+.++++.||
T Consensus 103 ~~~i~~~di~~~i~~a~~~-~~p~d~~~l~~~p~~f~vDg~~~i~~P~Gm~g~~l~~~v~~v~~~~~~v~n~~~~~~~AG 181 (419)
T 4a2a_A 103 KRSITLDILSEMQSEALEK-LKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTV 181 (419)
T ss_dssp CEECCHHHHHHHHHHHHHH-HSCTTEEEEEEEEEEEEETTTEEESCCTTCEESEEEEEEEEEEEEHHHHHHHHHHHHTTS
T ss_pred CCEECHHHHHHHHHHhhhh-cCCCCCEEEEEEeeEEEECCccCcCCCCCCcccEEEEEEEEEEEeHHHHHHHHHHHHHcC
Confidence 4566666667777766543 235555554 333322 1234567889999999
Q ss_pred CceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 117 LNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 117 l~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
|++..++.||.|+++.+..+. ..+.+.+.+|+|+++++..+
T Consensus 182 L~v~~lv~ep~Aaa~a~l~~~--~~~~gv~vvDiGggttdisi 222 (419)
T 4a2a_A 182 KSPFQLKSSLVSTAEGVLTTP--EKDRGVVVVNLGYNFTGLIA 222 (419)
T ss_dssp CSCEEEEEHHHHHHHHHCCHH--HHHHCEEEEEECSSSEEEEE
T ss_pred CcEEEEEEHHHHHHHHhhccc--cccCCEEEEEECCCcEEEEE
Confidence 999999999999998875432 24468999999999999754
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=83.04 E-value=26 Score=37.90 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=97.5
Q ss_pred CcceEEEEe-CCCCCHHHHHHHHH---HHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEe
Q psy3270 170 KVSEAVITV-PAYFNDSQRQATKD---AGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAID 245 (655)
Q Consensus 170 ~~~~~vitV-Pa~~~~~~r~~~~~---a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~ 245 (655)
+++.+++|. |..|+.- |-.+-- -+...|.+.+. |+.-.|-+++.........+ +++-+.||++.+-.+ .
T Consensus 72 ~id~ia~~~gPG~~~~l-~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p---~~l~vsGg~t~~~~~--~ 144 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSL-RVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP---LTLYVSGGNTQVIAY--V 144 (540)
T ss_dssp GCCEEEEEEESSCHHHH-HHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC---EEEEECSSCEEEEEE--E
T ss_pred HCcEEEEecCCCchhhH-HHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC---cEEEEcCCCcEEEEE--e
Confidence 677777777 6655433 222221 23334555443 45555544443333322222 666677888766544 4
Q ss_pred CCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcc
Q psy3270 246 EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID 325 (655)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~ 325 (655)
.+ .+++++..-|. --|+-||..- .. .|......+ .+...|...+ . .+.++....+.+
T Consensus 145 ~~-~~~~lg~t~d~-s~G~~~D~~a-~~--------lgl~~~gg~----~ie~lA~~g~------~--~~~~p~~~~~~~ 201 (540)
T 3en9_A 145 SK-KYRVFGETLDI-AVGNCLDQFA-RY--------VNLPHPGGP----YIEELARKGK------K--LVDLPYTVKGMD 201 (540)
T ss_dssp TT-EEEEEEEBSSS-CHHHHHHHHH-HH--------TTCCSSCHH----HHHHHHHTCC------C--CCCCCCCEETTE
T ss_pred CC-ceEEEeeccch-HhHHHHHHHH-HH--------cCCCCCCHH----HHHHHHHcCC------c--cCcCCCCCCCcc
Confidence 55 78888776543 3466666422 21 222222222 1222222211 0 011111111222
Q ss_pred eEEe-------------ecHHHHHHHhhH-HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhC--C
Q psy3270 326 FYSK-------------ITRARFEELCMD-LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN--G 389 (655)
Q Consensus 326 ~~~~-------------itr~~~e~~~~~-~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~ 389 (655)
+++. .+..++...++. +++.+.+.+.++++..+ ++.|+|+||-+....+++.+.+.+. +
T Consensus 202 ~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~~~~~ 276 (540)
T 3en9_A 202 IAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMCEGQN 276 (540)
T ss_dssp ECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHHHHTT
T ss_pred eecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHHHhcC
Confidence 2210 112222222222 33444455666666655 4679999999999999999998763 2
Q ss_pred CcccCCC---CchhHHHhHHH
Q psy3270 390 KSLNLSI---NPDEAVAYGAA 407 (655)
Q Consensus 390 ~~v~~~~---~p~~ava~GAa 407 (655)
.++..+. -.|.++..|.+
T Consensus 277 ~~~~~p~~~~~~Dngamia~~ 297 (540)
T 3en9_A 277 VDFYVPPKEFCGDNGAMIAWL 297 (540)
T ss_dssp CEEECCCHHHHSSCHHHHHHH
T ss_pred CEEEeCCCcCCCCCHHHHHHH
Confidence 2333332 12445555544
|
| >3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* | Back alignment and structure |
|---|
Probab=82.66 E-value=3.9 Score=41.73 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=47.8
Q ss_pred HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc----CCCCchhHHHhHHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~----~~~~p~~ava~GAa~~a~~l 413 (655)
+..-+.+-+...|-+.++... ..++.|+++||+++.|.+.++|++.+++..+. ..++|+.-=|..-|++|...
T Consensus 261 v~ATLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aFA~LA~~~ 337 (371)
T 3qbx_A 261 IQATLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRF 337 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHHHHHHHHH
Confidence 334444444555555555433 13578999999999999999999999655442 23456655556667777543
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=82.22 E-value=2.4 Score=44.66 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--CceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHhhccccccCC-Ce
Q psy3270 68 EISSMVLTKMREIAEVYLGGK--VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKG-EK 143 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~--i~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~~~~~~~~~~-~~ 143 (655)
+....+++++.. +.++.. -..+++|.|+..+...|+.+.+.. +.+|++.+.++.++.+|++++|....... ..
T Consensus 103 d~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~ 179 (427)
T 3dwl_A 103 DHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179 (427)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCC
T ss_pred HHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCc
Confidence 445566666543 234432 247899999999999999999987 78999999999999999999986543322 45
Q ss_pred eEEEEeccccchhh
Q psy3270 144 NVLIFDLGGGTFDV 157 (655)
Q Consensus 144 ~~~~~d~g~~~~~~ 157 (655)
..+++|+|++.+..
T Consensus 180 tglVVDiG~g~T~v 193 (427)
T 3dwl_A 180 TGTVVDSGDGVTHI 193 (427)
T ss_dssp CEEEEEESSSCEEE
T ss_pred eEEEEECCCCceEE
Confidence 78999999987764
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.65 E-value=21 Score=35.20 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=28.7
Q ss_pred cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEE
Q psy3270 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242 (655)
Q Consensus 197 AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 242 (655)
.|++ +.+.|+-.|+|++-..........+++++-+|.| .-.+++
T Consensus 98 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 98 TGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEE
Confidence 3654 6789999999987543322234567888888887 334443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 655 | ||||
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 7e-80 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 8e-05 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-77 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-05 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 1e-70 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 2e-58 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 9e-26 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 2e-54 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 3e-53 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 2e-28 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 9e-47 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 5e-28 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 3e-04 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 1e-25 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 6e-25 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 7e-04 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 2e-21 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 5e-20 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 3e-16 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-19 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 1e-17 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 8e-05 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 249 bits (637), Expect = 7e-80
Identities = 156/192 (81%), Positives = 171/192 (89%), Gaps = 1/192 (0%)
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
E+NVLIFDLGGGTFDVS+L I++G +F+VKSTAGDTHLGGEDFDNR+V F EFKRKH
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH 61
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDL 342
KKDI N RAVRRLRTACERAKRTLSSST+AS+EID+L+EGIDFY+ ITRARFEEL DL
Sbjct: 62 KKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
Query: 343 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402
FR TL PVE+AL DAKLDK IHD+VLVGGS RIPKIQK+LQDFFNGK LN SINPDEAV
Sbjct: 122 FRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 181
Query: 403 AYGAAVQAAILS 414
AYGAAVQAAILS
Sbjct: 182 AYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.9 bits (98), Expect = 8e-05
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 141 GEKNVLIFDLGGGTFDVSMREIAE 164
E+NVLIFDLGGGTFDVS+ I +
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIED 26
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 243 bits (622), Expect = 2e-77
Identities = 84/199 (42%), Positives = 124/199 (62%), Gaps = 8/199 (4%)
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDE---GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK 279
G + + ++DLGGGTFD+S++ IDE F+V +T GDTHLGGEDFD+RL+ + +EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 280 RKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI----DFYSKITRARF 335
+ D+ + A++RL+ A E+AK LSS+ + + + + K+TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
E L DL +++ ++ AL DA L I DV+LVGG R+P +QK + +FF GK
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 396 INPDEAVAYGAAVQAAILS 414
+NPDEAVA GAAVQ +L+
Sbjct: 180 VNPDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 44.1 bits (104), Expect = 2e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 GEKNVLIFDLGGGTFDVSMREIAEVYLGGKV 171
G + + ++DLGGGTFD+S+ EI EV
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 31
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 224 bits (571), Expect = 1e-70
Identities = 121/159 (76%), Positives = 140/159 (88%)
Query: 418 SSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFE 477
S +QD+LL+DV PLSLGIETAGGVMT +++RN+ IP KQ QTFTTYSDNQ V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 478 GERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQ 537
GERAMTKDNNLLG F LTGIPPAPRGVP+IEVTFD+DANGILNVSA D STGK +ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 538 NDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
NDKGRLSK+DI+RM+ EAEKYKAED+KQR++V++KN LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 192 bits (490), Expect = 2e-58
Identities = 103/129 (79%), Positives = 116/129 (89%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NTVFDAKRLIGR+F+D +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE
Sbjct: 56 VAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEE 115
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
+SSMVLTKM+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTA
Sbjct: 116 VSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 175
Query: 129 AALAYGLDK 137
AA+AYGLDK
Sbjct: 176 AAIAYGLDK 184
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 102 bits (255), Expect = 9e-26
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 124 MKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 183
Query: 219 K 219
K
Sbjct: 184 K 184
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 179 bits (456), Expect = 2e-54
Identities = 72/118 (61%), Positives = 91/118 (77%)
Query: 424 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMT 483
VLL+DV PLSLGIET GGVMT ++ +N+ IP K Q F+T DNQ+AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 484 KDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKG 541
DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD ++GK ++ITI+ G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 178 bits (453), Expect = 3e-53
Identities = 78/130 (60%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEE 68
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V+ + K AP +
Sbjct: 57 VTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQ 112
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTA
Sbjct: 113 ISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 172
Query: 129 AALAYGLDKN 138
AALAYGLDK
Sbjct: 173 AALAYGLDKG 182
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 109 bits (274), Expect = 2e-28
Identities = 52/93 (55%), Positives = 60/93 (64%), Gaps = 9/93 (9%)
Query: 137 KNLKGEKNVLIFDLGGGTFDVS---------MREIAEVYLGGKVSEAVITVPAYFNDSQR 187
K + + ++ G M++ AE YLG V+EAVITVPAYFND+QR
Sbjct: 90 KIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQR 149
Query: 188 QATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 220
QATKDAG IAGL V RIINEPTAAALAYGLDK
Sbjct: 150 QATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 158 bits (401), Expect = 9e-47
Identities = 52/114 (45%), Positives = 73/114 (64%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PLSLG+ET GG++ K++ RN+ IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKG 541
L F L GIP P G I VTF +DA+G+L+V+A + STG I ++ G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 109 bits (272), Expect = 5e-28
Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 15/190 (7%)
Query: 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
++ D+GGGT +V+V+++ T + G++ D +V + + ++
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSI------VTWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 284 KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLF 343
+ + + + E ++ L G+ + E +
Sbjct: 60 ERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 344 RQTLAPVERALNDAKLDKGS---IHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400
+ V L + S + L GG + + +LQ G S+ S P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLT 173
Query: 401 AVAYGAAVQA 410
AVA GA +
Sbjct: 174 AVAKGAGMVL 183
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 142 EKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDS 185
++ D+GGGT +V++ + LG V+ I + D
Sbjct: 6 PSGNMVVDIGGGTTEVAV-----ISLGSIVTWESIRIAGDEMDE 44
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 98.7 bits (246), Expect = 1e-25
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 571 AKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLK 628
+ LESYAF +K ED K++D DK + C+ ++WL+ N AEKEEFE + K
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 629 TLQQTCTPIMTKLHQAGGKGP 649
L++ C PI+TKL+Q+ G P
Sbjct: 62 ELEKVCNPIITKLYQSAGGMP 82
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (247), Expect = 6e-25
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 34/194 (17%)
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
+ L ++LI DLGG T D+S + G L + GD+ LG + + +
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
+ A I + +I +
Sbjct: 58 TKGSSYL---------------------------ADDIIIHRKDNNYLKQRINDENKISI 90
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI-- 396
+ + L +E+ + + + V+++GG + I ++ +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 148
Query: 397 NPDEAVAYGAAVQA 410
N + G +
Sbjct: 149 NSQYDLVNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (89), Expect = 7e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 137 KNLKGEKNVLIFDLGGGTFDVSM 159
+ L ++LI DLGG T D+S
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQ 23
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 87.1 bits (216), Expect = 2e-21
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 602
L++D+I +M+ +AE D K E V +N+ + + ++ E++G KL DKT++
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 603 QACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
A +A T L+G +K E +++ L Q +M
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 84.4 bits (208), Expect = 5e-20
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 3 ISLDL-----SVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEY 57
I +DL V + K V + +I +I + + K
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPM 62
Query: 58 KGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGL 117
+ A ++ ++L A+ + VI VP D +R+A DAG AG
Sbjct: 63 RD--GVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGA 120
Query: 118 NVLRIINEPTAAALAYGLD 136
+ + +I EP AAA+ G +
Sbjct: 121 SKVFLIEEPMAAAI--GSN 137
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 73.6 bits (180), Expect = 3e-16
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
A+ + VI VP D +R+A DAG AG + + +I EP AAA+ G +
Sbjct: 80 FINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 83.3 bits (205), Expect = 3e-19
Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 35/183 (19%)
Query: 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
++ D+G T DV I+ + V + +G D + L A E
Sbjct: 5 PGYGVVIDVGSRTTDVLT--INLMDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 284 KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLF 343
D+ + + + +++ E+L +
Sbjct: 63 FDL---AQEALSHPVMFRQKQVGG--------------------PEVSGPILEDLANRII 99
Query: 344 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI-NPDEAV 402
+ ++ + ++ VGG + I ++ G + + + A
Sbjct: 100 ENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 150
Query: 403 AYG 405
A G
Sbjct: 151 ALG 153
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 76.9 bits (189), Expect = 1e-17
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 602
L+ +I M+ ++ Y +D K R K + ++ A + LS A++ +
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 603 QACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLH----QAGGKGPDVEE 653
A + +G+ + + E +K + + + + KG V+E
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDE 112
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 41.8 bits (97), Expect = 8e-05
Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 222 KGEKN--VLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK 279
EK+ V++ +LG + G ++ +G + + F+
Sbjct: 2 TPEKDRGVVVVNLGYNFTGLIA--YKNGVPIKISY----VPVGMKHVIKDVSAVLDTSFE 55
Query: 280 RKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELC 339
+ I+ + AV E R L +T + L I AR E+
Sbjct: 56 ESERL-IITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI- 106
Query: 340 MDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388
M ++ VE + + VVL GG +IP+I ++ + F
Sbjct: 107 MSKSKKFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 655 | |||
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.98 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.93 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.92 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.92 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.84 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.56 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.54 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.52 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.36 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.32 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.31 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.22 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.19 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.16 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.89 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.85 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.8 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.63 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.57 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 96.12 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 95.75 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 95.55 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 94.28 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 92.28 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 89.61 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 86.23 | |
| d2hoea2 | 169 | N-acetylglucosamine kinase {Thermotoga maritima [T | 81.28 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.1e-38 Score=300.60 Aligned_cols=191 Identities=82% Similarity=1.201 Sum_probs=183.6
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACER 302 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 302 (655)
.++++||||+||||||+|++++.++ .++++++.|+..+||.+||++|++|+.++|..+++.++..+++.+.+|+.+||+
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~-~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 81 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACER 81 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCC-EEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 5688999999999999999999888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHH
Q psy3270 303 AKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 303 ~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
+|+.||.+.++.+.++.+..+.++..+|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||+|+|++.
T Consensus 82 ~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~ 161 (193)
T d1bupa2 82 AKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 161 (193)
T ss_dssp HHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred HhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 383 LQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 383 l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
|+++|++.++..+.||++|||+|||++||+||
T Consensus 162 i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 162 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99999878888899999999999999999885
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.6e-37 Score=296.97 Aligned_cols=190 Identities=44% Similarity=0.756 Sum_probs=175.5
Q ss_pred CceEEEEEeCCceeEEEEEEEeC---CceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Q psy3270 224 EKNVLIFDLGGGTFDVSVLAIDE---GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTAC 300 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~~~~---~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (655)
+++|||||+||||||+|++++.. +..++++++.++..+||++||+.|++|+.++|.++++.++..+++.+.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 35799999999999999999973 236899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEccccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccch
Q psy3270 301 ERAKRTLSSSTEASLEIDALHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRI 376 (655)
Q Consensus 301 e~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 376 (655)
|++|+.||.+.++++.++....+ .++.++|||++|+++++|+++++.++|.++|+++++++.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 99999999999998888765433 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 377 PKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 377 p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
|+|++.|++.| +.++..+.||++|||+|||++|++||
T Consensus 162 p~l~~~i~~~f-~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHH-CCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999 56788899999999999999998875
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=1e-32 Score=249.41 Aligned_cols=157 Identities=76% Similarity=1.141 Sum_probs=152.5
Q ss_pred cccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCC
Q psy3270 420 AIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPP 499 (655)
Q Consensus 420 ~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~ 499 (655)
.++++++.|++|+|+||++.+|.|.+|||||++||++++..|+|..|+|+.+.|.||||++..+.+|.+||+|.|+|+||
T Consensus 3 ~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~ 82 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPP 82 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCC
T ss_pred ccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHH
Q psy3270 500 APRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576 (655)
Q Consensus 500 ~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 576 (655)
+|+|.++|.|+|++|.||+|+|+|.+..||+..++.|.+..+.|+++|++++++++++++.+|++.|++.++||.||
T Consensus 83 ~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 83 APRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred CCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999987889999999999999999999999999999999876
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=3e-26 Score=215.98 Aligned_cols=137 Identities=75% Similarity=1.147 Sum_probs=132.5
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|..|+.++.++|+++++++|||||++++|+.++...+.+||.++.++++..+.+.+.++.+.|+|+||++++|+++++.
T Consensus 48 vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~ 127 (185)
T d1bupa1 48 IGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEI 127 (185)
T ss_dssp ETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred EeechHHHhhcCcccchhHHHHHhCCCCccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999988899999999999889999999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhcccc
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK 137 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~ 137 (655)
|+.+++.++.++|||||++|++.||+++++||++|||+++++|+||+|||++||+++
T Consensus 128 a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 128 AEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999864
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.5e-25 Score=189.91 Aligned_cols=116 Identities=60% Similarity=0.981 Sum_probs=112.3
Q ss_pred EeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCC
Q psy3270 425 LLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGV 504 (655)
Q Consensus 425 ~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~ 504 (655)
++.|++|+|+||++.+|.|.+|||||++||++++..|+|..|+|+.+.|.+||||+..+++|.+||++.|+++|+.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCC
Q psy3270 505 PKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDK 540 (655)
Q Consensus 505 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~ 540 (655)
+.|+|+|++|.||+|+|+|.+..||++.+++|....
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 999999999999999999999999999999988653
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.92 E-value=1.1e-25 Score=211.73 Aligned_cols=134 Identities=60% Similarity=0.912 Sum_probs=123.6
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|+.++.++|+++++++|||||+++.|+.++...+.+||+++. ++|...+ ...+ +.|+|++|++++|+++++
T Consensus 48 ~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~l~a~~L~~l~~ 123 (183)
T d1dkgd1 48 VGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWV--EVKG--QKMAPPQISAEVLKKMKK 123 (183)
T ss_dssp ESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEE--EETT--EEECHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHHhhhhcCCEEEEEcCCCcEEE--EECC--EEECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999984 4555544 4445 679999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccc
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 138 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~ 138 (655)
.|++++|.++.++|||||++|++.||+++.+||++|||+++++++||+|||++||++++
T Consensus 124 ~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 124 TAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp HHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC-
T ss_pred HHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999998753
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.1e-24 Score=185.27 Aligned_cols=114 Identities=45% Similarity=0.778 Sum_probs=110.7
Q ss_pred eecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCCCCCCe
Q psy3270 427 VDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPK 506 (655)
Q Consensus 427 ~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~ 506 (655)
.||+|+|+||++.+|.|.+|||||++||++++..|+|..|+|+.+.|.+||||+..+.+|..||.+.|.++|++|+|.+.
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCeeEEEEEEeccCCCceeeeeecCC
Q psy3270 507 IEVTFDLDANGILNVSAKDSSTGKAERITIQNDK 540 (655)
Q Consensus 507 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~ 540 (655)
|+|+|++|.||+|+|+|.+..||++.+++|+.+.
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCC
Confidence 9999999999999999999999999999998763
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=3.5e-22 Score=189.92 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=130.1
Q ss_pred CCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHH
Q psy3270 222 KGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACE 301 (655)
Q Consensus 222 ~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e 301 (655)
.++.++||||+||||||+|+++.... .+.+....||.+++..+..++...+....... ..........
T Consensus 4 ~~~~gvlV~DiGGGT~Dvsi~~~g~~------~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 71 (196)
T d1jcea2 4 EEPSGNMVVDIGGGTTEVAVISLGSI------VTWESIRIAGDEMDEAIVQYVRETYRVAIGER------TAERVKIEIG 71 (196)
T ss_dssp TSSSCEEEEEECSSCEEEEEEETTEE------EEEEEESCSHHHHHHHHHHHHHHHHCEECCHH------HHHHHHHHHC
T ss_pred CCCCceEEEEcCCCcEEEEEEEcCCE------eEEeeecCCCcccccchhhhhhhhhcccccch------hHHHHHHHHh
Confidence 46788999999999999999975322 22234578999999999999887765332211 1111111100
Q ss_pred HHHH-hcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCC---CcceEEEecCccchH
Q psy3270 302 RAKR-TLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKG---SIHDVVLVGGSIRIP 377 (655)
Q Consensus 302 ~~K~-~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~---~i~~ViLvGG~s~~p 377 (655)
.++. .-+......+......++.+....+++.++.+++.++++++...+.++++.+..... .++.|+||||+|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip 151 (196)
T d1jcea2 72 NVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLR 151 (196)
T ss_dssp BCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSB
T ss_pred hhhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcch
Confidence 0000 000112234455556667778889999999999999999999999999998764432 256799999999999
Q ss_pred HHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 378 KIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 378 ~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
+|++++++.| +.++....||++|||+|||+++..+
T Consensus 152 ~v~~~l~~~f-g~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 152 GLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp THHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred hHHHHHHHHH-CcCCccCCChHHHHHHHHHHHHHCH
Confidence 9999999999 6889999999999999999977443
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=2e-15 Score=120.38 Aligned_cols=79 Identities=44% Similarity=0.780 Sum_probs=72.3
Q ss_pred HHhhHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3270 571 AKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGGKG 648 (655)
Q Consensus 571 akN~LEs~iy~~r~~l~~~~--~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~ 648 (655)
++|+||+|||.+|+.|.++. .++++++++.|.+.|+++++||+++.++++++|++|+++|++++.||+.|+++.+|.+
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g~~ 81 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGM 81 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 57999999999999998654 7899999999999999999999998889999999999999999999999998886554
Q ss_pred C
Q psy3270 649 P 649 (655)
Q Consensus 649 ~ 649 (655)
|
T Consensus 82 P 82 (84)
T d1ud0a_ 82 P 82 (84)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=1.9e-14 Score=134.78 Aligned_cols=158 Identities=17% Similarity=0.271 Sum_probs=112.8
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACER 302 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 302 (655)
++.+++|+|+|+||||++++. +| .+....+ .++||++||+.|...+. . -..+||+
T Consensus 5 k~~Gv~vvDiG~~tt~i~i~~--~G-~l~~~~~---i~~GG~~iT~~Ia~~l~--------i-----------~~~~AE~ 59 (191)
T d1e4ft2 5 KDRGVVVVNLGYNFTGLIAYK--NG-VPIKISY---VPVGMKHVIKDVSAVLD--------T-----------SFEESER 59 (191)
T ss_dssp HHHCEEEEEECSSCEEEEEEE--TT-EEEEEEE---ESCCHHHHHHHHHHHHT--------C-----------CHHHHHH
T ss_pred hhCCEEEEEeCCCcEEEEEEE--CC-eEEEEEE---EeeChHHHHHHHHHHhc--------c-----------cHHHHHH
Confidence 356799999999999999976 45 3222222 46999999999987652 1 1336999
Q ss_pred HHHhcCCC-----CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC------CCCcceEEEec
Q psy3270 303 AKRTLSSS-----TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD------KGSIHDVVLVG 371 (655)
Q Consensus 303 ~K~~ls~~-----~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~------~~~i~~ViLvG 371 (655)
+|+.++.. ....+.+... +......+++..+.+++++++++++..+.+.++..... ...+..|+|+|
T Consensus 60 iK~~~g~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtG 137 (191)
T d1e4ft2 60 LIITHGNAVYNDLKEEEIQYRGL--DGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTG 137 (191)
T ss_dssp HHHHHCCSCCTTCCCCEEEEECT--TSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEES
T ss_pred HHhhccccccccccchhcccccc--cCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEec
Confidence 99986522 2223333322 22334578999999999999999999998888763211 11245699999
Q ss_pred CccchHHHHHHHHhhhCCCcccC-----------------CCCchhHHHhHHHH
Q psy3270 372 GSIRIPKIQKMLQDFFNGKSLNL-----------------SINPDEAVAYGAAV 408 (655)
Q Consensus 372 G~s~~p~v~~~l~~~f~~~~v~~-----------------~~~p~~ava~GAa~ 408 (655)
|+|++|++.+.+++.| +.+++. ..+|.+++|.|.+|
T Consensus 138 Ggs~l~gl~~~l~~~l-~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 138 GGAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGGGSTTHHHHHHHHH-CSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred chhhhhhHHHHHHHHH-CCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 9999999999999999 454421 12688999999875
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.1e-14 Score=132.97 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=100.7
Q ss_pred CCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHH
Q psy3270 222 KGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACE 301 (655)
Q Consensus 222 ~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e 301 (655)
.+..++||+|+||||||+++++ .+ ...+....++..+||.+|++.+.+++...+... .......+
T Consensus 4 ~e~~~ilViDiGggTtDi~v~~--~~-~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~-------~~~~~~~~----- 68 (163)
T d2zgya2 4 DELDSLLIIDLGGTTLDISQVM--GK-LSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------SSYLADDI----- 68 (163)
T ss_dssp CTTCEEEEEEECSSCEEEEEEE--GG-GCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG-------GHHHHHHH-----
T ss_pred CCCCCEEEEECCCCcEEEEEEc--CC-eEEEEEeeccccccchHHHHHHHHhhHHhhchh-------hhhhHHHH-----
Confidence 4567899999999999999986 33 445556667788999999999988764322110 01000000
Q ss_pred HHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHH
Q psy3270 302 RAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQK 381 (655)
Q Consensus 302 ~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 381 (655)
++.. .....+ .........++.+.+++++.++++.+.+.+.+. ...+++.|+|+||+|++ +++
T Consensus 69 -~~~~---~~~~~~-------~~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~GGGs~l--l~~ 131 (163)
T d2zgya2 69 -IIHR---KDNNYL-------KQRINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVIGGGAEL--ICD 131 (163)
T ss_dssp -HHTT---TCHHHH-------HHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEESTTHHH--HHH
T ss_pred -HHhh---cccccc-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEECchHHH--HHH
Confidence 1100 000000 001111334556666666666666555555543 45678999999999964 999
Q ss_pred HHHhhhCCC--cccCCCCchhHHHhHHHHHH
Q psy3270 382 MLQDFFNGK--SLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 382 ~l~~~f~~~--~v~~~~~p~~ava~GAa~~a 410 (655)
.+++.|+.. .+....||.+|+|+|+.++|
T Consensus 132 ~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 132 AVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 999999532 46677899999999999876
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=3.2e-13 Score=119.26 Aligned_cols=72 Identities=29% Similarity=0.278 Sum_probs=69.4
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhh
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAY 133 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~ 133 (655)
..+++.++.++++++++..++...+.++.++|||||++|++.||+++++||+.|||+++++|+||+|||+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 65 GVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHT
T ss_pred CccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEEEEeCCHHHHHhCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999975
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.32 E-value=7.5e-13 Score=122.96 Aligned_cols=63 Identities=79% Similarity=1.087 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHccccc
Q psy3270 157 VSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK 219 (655)
Q Consensus 157 ~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~ 219 (655)
..|++.++.++|.++.++|||||++|++.||++|++||+.||++++.|++||+|||++|++++
T Consensus 119 ~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 119 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp HHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHhcccC
Confidence 367899999999999999999999999999999999999999999999999999999999864
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.31 E-value=1.2e-12 Score=121.72 Aligned_cols=64 Identities=81% Similarity=1.149 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHccccc
Q psy3270 156 DVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK 219 (655)
Q Consensus 156 ~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~ 219 (655)
...|+..++.+++.++.++|||||++|++.||+++++||+.|||+++.||+||+|||++|++++
T Consensus 121 l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 121 LTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 3478889999999999999999999999999999999999999999999999999999999764
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.22 E-value=2.5e-12 Score=116.75 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=99.7
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACER 302 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 302 (655)
++.++||+|+||||||++++...+. .+ +....+....|+.+++..+.+++..++. .... .. ..+.
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~-~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~----~~~~--~~-------~~~~ 68 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDM-EP-VVELSFSLQIGVGDAISALSRKIAKETG----FVVP--FD-------LAQE 68 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTT-EE-CGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCC--HH-------HHHH
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCe-EE-EEEEeccHhHHHHHHHHHHHHHHHHHHH----hhhh--HH-------HHHH
Confidence 4678999999999999999875433 22 2222334568999999888887766553 2221 11 1111
Q ss_pred HHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHH
Q psy3270 303 AKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 303 ~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
+. .. . .... +.. .-.++.+.+.++++++.+...+...+... ...++.|+|+||+|++ +++.
T Consensus 69 ~~----~~-~--~~~~----g~~---~~~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga~l--l~~~ 129 (161)
T d2fsja1 69 AL----SH-P--VMFR----QKQ---VGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDR 129 (161)
T ss_dssp HT----TS-C--EEET----TEE---ECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HGGG
T ss_pred HH----hc-c--cccc----ccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHHHH--HHHH
Confidence 11 11 1 1111 111 12345666777777777777777766542 3568999999999987 7899
Q ss_pred HHhhhCCCcc-cCCCCchhHHHhHHHHHH
Q psy3270 383 LQDFFNGKSL-NLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 383 l~~~f~~~~v-~~~~~p~~ava~GAa~~a 410 (655)
+++.|++..+ ..+.||..|+|+|.-..|
T Consensus 130 l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 130 FEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 9999965443 345699999999987655
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1e-11 Score=109.31 Aligned_cols=58 Identities=33% Similarity=0.311 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHc
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAY 215 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~ 215 (655)
.+...++...+.++.++|||||++|++.||+++++|++.||+++++||+||+|||+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHT
T ss_pred HHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEEEEeCCHHHHHhCC
Confidence 5677788888999999999999999999999999999999999999999999999864
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.9e-10 Score=96.49 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=93.6
Q ss_pred CcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHH
Q psy3270 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEE 622 (655)
Q Consensus 543 l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~ 622 (655)
||++||++++....++..+|..+|+..++||++|++||.++..|......++++++..+...++++..||.++ +...
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~---d~~~ 77 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGD---DVDA 77 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCC---CHHH
Confidence 7899999999999999999999999999999999999999999988778899999999999999999999875 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy3270 623 FEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 623 ~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
++..++.|+..+.|+..|.++.
T Consensus 78 I~~~~~~L~~~~~~~a~~~m~~ 99 (112)
T d1u00a1 78 IEQAIKNVDKQTQDFAARRMDQ 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887764
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=3.6e-10 Score=92.14 Aligned_cols=95 Identities=29% Similarity=0.459 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHH
Q psy3270 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEE 622 (655)
Q Consensus 543 l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~ 622 (655)
||++||++|+....++...|..+|++.++||++|+|||.++..|......++++++..+.+.++++..||..+ +...
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~---d~~~ 77 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAA 77 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSS---CHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHH
Confidence 7899999999999999999999999999999999999999999987767899999999999999999999775 5788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3270 623 FEDRLKTLQQTCTPIMTK 640 (655)
Q Consensus 623 ~~~kl~~L~~~~~~i~~r 640 (655)
++.++..|+....++...
T Consensus 78 i~~~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 78 IEAKMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998887653
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=1.4e-05 Score=75.29 Aligned_cols=171 Identities=22% Similarity=0.279 Sum_probs=94.0
Q ss_pred EEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccc--cHHHHHHHHH------
Q psy3270 227 VLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILA--NTRAVRRLRT------ 298 (655)
Q Consensus 227 vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~------ 298 (655)
-+|+|+|++.|.++-+. +| . .+........+||.++++.|.+++.+.. .+... +......++.
T Consensus 4 glVVDiG~~~t~v~PV~--eG-~-~l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~~~~~~~~~~~~ke~~~~~~ 74 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--EG-Y-ALPHAIMRLDLAGRDLTDYLMKILTERG-----YSFVTTAEREIVRDIKEKLCYVA 74 (225)
T ss_dssp EEEEEECSSCEEEEEEE--TT-E-ECGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCCSHHHHHHHHHHHHHHCCCC
T ss_pred EEEEEcCCCcEEEEEEE--CC-E-EchhceEEEECcHHHHHHHHHHHHhhcc-----CCcCCHHHHHHHHHHHHHHhhcc
Confidence 48999999999988764 34 1 1111122246999999999988875432 11111 1111111111
Q ss_pred ---HHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHH---HHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcc
Q psy3270 299 ---ACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFE---ELCMDLF-----RQTLAPVERALNDAKLD--KGSIH 365 (655)
Q Consensus 299 ---~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~ 365 (655)
..|..+...+........ +.++. .+.+..+.|. -++.|.. ..+.+.|.+++..+..+ +.-..
T Consensus 75 ~d~~~e~~~~~~~~~~~~~~~---lpdg~--~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~ 149 (225)
T d2fxua2 75 LDFENEMATAASSSSLEKSYE---LPDGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYA 149 (225)
T ss_dssp SSHHHHHHHHHHCSTTCEEEE---CTTSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHT
T ss_pred cchhHHHhhcccCcccceeEE---CCCCC--EEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhc
Confidence 112222222222223333 23343 2344544332 2333321 13455566666554321 22346
Q ss_pred eEEEecCccchHHHHHHHHhhh----C---CCcccCCCCchhHHHhHHHHHHH
Q psy3270 366 DVVLVGGSIRIPKIQKMLQDFF----N---GKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 366 ~ViLvGG~s~~p~v~~~l~~~f----~---~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
.|+|+||+|.+|++.++|.+.+ + ...+..+.+|..++=+|++++|.
T Consensus 150 nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilas 202 (225)
T d2fxua2 150 NNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 202 (225)
T ss_dssp CEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred CEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhc
Confidence 7999999999999999998765 1 12334455777899999999885
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.89 E-value=9.4e-05 Score=63.42 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=88.7
Q ss_pred CceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Q psy3270 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERA 303 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 303 (655)
+....++|+||||||.+++.-++. ...+-. . -.|+.++..|...+ +.+ + +.-||.+
T Consensus 3 ~~plaIlDlG~GStDasii~~~g~-v~avhl-A----GAG~mVTmlI~~eL--------Gl~---d-------~~lAE~I 58 (202)
T d1nbwa3 3 AAPLAILDLGAGSTDAAIVNAEGQ-ITAVHL-A----GAGNMVSLLIKTEL--------GLE---D-------LSLAEAI 58 (202)
T ss_dssp CSSEEEEEECSSEEEEEEECSSSC-EEEEEE-E----CCHHHHHHHHHHHH--------TCS---C-------HHHHHHH
T ss_pred CCceEEEEcCCCccchhhccCCCc-EEEEEe-c----CCchhhHHHHHHHh--------CCC---c-------HHHHHHH
Confidence 345789999999999999974433 332221 1 24777776664332 211 0 1237777
Q ss_pred HHhcCC-----------CCceEEEEcccc-----------CC--cceEEeecHHHHHHHhhHHHHhhh-hHHHHHHHHcC
Q psy3270 304 KRTLSS-----------STEASLEIDALH-----------EG--IDFYSKITRARFEELCMDLFRQTL-APVERALNDAK 358 (655)
Q Consensus 304 K~~ls~-----------~~~~~i~i~~~~-----------~~--~~~~~~itr~~~e~~~~~~~~~i~-~~i~~~l~~~~ 358 (655)
|+-=-. +....+.-+.+. ++ .++...++-+++..+=...-++++ .-+.++|+...
T Consensus 59 KkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vs 138 (202)
T d1nbwa3 59 KKYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVS 138 (202)
T ss_dssp HHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred hhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcC
Confidence 754110 001111000000 00 122224454555444333333332 23455666543
Q ss_pred CC--CCCcceEEEecCccchHHHHHHHHhhhC-------CCcccCCCCchhHHHhHHHHH
Q psy3270 359 LD--KGSIHDVVLVGGSIRIPKIQKMLQDFFN-------GKSLNLSINPDEAVAYGAAVQ 409 (655)
Q Consensus 359 ~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~-------~~~v~~~~~p~~ava~GAa~~ 409 (655)
.. ..+|..|+|+|||+.=--|-+++.+.+. .-.++-.--|..|||.|.++.
T Consensus 139 p~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 139 PGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp TTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 33 3578999999999987777777777762 224555567999999998864
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.85 E-value=0.00016 Score=61.79 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=52.2
Q ss_pred ecHHHHHHHhhHHHHhh-hhHHHHHHHHcCC--CCCCcceEEEecCccchHHHHHHHHhhhCCC-------cccCCCCch
Q psy3270 330 ITRARFEELCMDLFRQT-LAPVERALNDAKL--DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPD 399 (655)
Q Consensus 330 itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~p~ 399 (655)
++-+++..+=...-+++ ..-+.++|+.... +..+|..|+|||||+.=--|-+++.+.+..- .++-.--|.
T Consensus 109 ~~~Eki~~vRr~aK~kvfvtNa~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPR 188 (203)
T d2d0oa3 109 LALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPR 188 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTS
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCch
Confidence 44444443333332332 2334556665432 2457999999999999888888888887332 444556799
Q ss_pred hHHHhHHHHHH
Q psy3270 400 EAVAYGAAVQA 410 (655)
Q Consensus 400 ~ava~GAa~~a 410 (655)
.|||.|.++.-
T Consensus 189 nAVAtGLvl~y 199 (203)
T d2d0oa3 189 NAVATGLILSW 199 (203)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998743
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=5.7e-05 Score=72.58 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=95.0
Q ss_pred eEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHH-------
Q psy3270 226 NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRT------- 298 (655)
Q Consensus 226 ~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 298 (655)
+=+|+|+|.+.|+++-+. +| . .+........+||.+++..|.+++.+. .+......+......+..
T Consensus 4 TGlVVDiG~~~T~v~PV~--eG-~-~l~~~~~~~~~GG~~lt~~L~~~L~~~---~~~~~~~~~~~~~~~~ke~~~~v~~ 76 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--EG-Y-VIGSCIKHIPIAGRDITYFIQQLLRDR---EVGIPPEQSLETAKAVKERYSYVCP 76 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--TT-E-ECGGGCEEESCSHHHHHHHHHHHHHTT---CCCCCGGGHHHHHHHHHHHHCCCCS
T ss_pred EEEEEEcCCCcEEEEEEE--CC-E-EchhheEEEeCcHHHHHHHHHHHHHHc---CCCCCcHHHHHHHHhHHhhhccccc
Confidence 459999999999998774 34 1 111111225699999999988877431 111111111111111111
Q ss_pred ----HHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHH---HHhhHH------HHhhhhHHHHHHHHcCCC--CCC
Q psy3270 299 ----ACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFE---ELCMDL------FRQTLAPVERALNDAKLD--KGS 363 (655)
Q Consensus 299 ----~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~ 363 (655)
+.++.+..-+.. ................+.+..+.|. -++.|- ...+.+.|.+++..+..+ +.-
T Consensus 77 d~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L 155 (258)
T d1k8ka2 77 DLVKEFNKYDTDGSKW-IKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPL 155 (258)
T ss_dssp CHHHHHHHHHHSGGGT-CEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHH
T ss_pred chHHHHHhhccccccc-ccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHH
Confidence 111111111111 1122332222233445566665552 223322 123556677777766533 223
Q ss_pred cceEEEecCccchHHHHHHHHhhhCC-----------------------CcccCCCCchhHHHhHHHHHHH
Q psy3270 364 IHDVVLVGGSIRIPKIQKMLQDFFNG-----------------------KSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 364 i~~ViLvGG~s~~p~v~~~l~~~f~~-----------------------~~v~~~~~p~~ava~GAa~~a~ 411 (655)
...|+|+||+|.+|++.++|.+.+.. ..+..+.++..++=+||+++|.
T Consensus 156 ~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 156 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 57799999999999999988766510 1222334567888889988874
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.63 E-value=0.00055 Score=64.92 Aligned_cols=71 Identities=24% Similarity=0.256 Sum_probs=54.8
Q ss_pred HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
++...++.+...+...+... .+++.|++.||.++.+++++.+++.+ +.++..+.+|+.+.|+|||++|...
T Consensus 186 i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l-~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 186 IIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHH-CCCEEcCCCccHHHHHHHHHHHHHH
Confidence 34444444555554444432 24567999999999999999999999 6788889999999999999999754
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=9.5e-05 Score=67.37 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=80.1
Q ss_pred EEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH--------
Q psy3270 228 LIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA-------- 299 (655)
Q Consensus 228 lV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 299 (655)
||+|+|.+.|.++-+. +| . .+........+||.++++.|.+.+.+.- ..............+...
T Consensus 2 lVVDiG~~~T~v~PV~--dG-~-~l~~a~~~~~igG~~lt~~l~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~v~~~~ 74 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EG-F-SLPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADFETVRMIKEKLCYVGYNI 74 (190)
T ss_dssp CEEEECSSCEEEECEE--TT-E-ECSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTHHHHHHHHHHHCCCCSSH
T ss_pred EEEEcCCCcEEEEEeE--CC-E-EcccceEEEeccHHHHHHHHHHHHHhcC---CcccchHHHHHHHHHHhhhhhhcccH
Confidence 6999999999988664 33 1 1111112246999999998877764321 111111111111111110
Q ss_pred -HHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHh---------hhhHHHHHHHHcCCC--CCCcceE
Q psy3270 300 -CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQ---------TLAPVERALNDAKLD--KGSIHDV 367 (655)
Q Consensus 300 -~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~---------i~~~i~~~l~~~~~~--~~~i~~V 367 (655)
.+..+...+........+ .++. .+.+..+.|. ..+.+++. +.+.|.+++..+..+ +.-...|
T Consensus 75 ~~e~~~~~~~~~~~~~~~l---pdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NI 148 (190)
T d1k8kb1 75 EQEQKLALETTVLVESYTL---PDGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 148 (190)
T ss_dssp HHHHHHHHHCSTTCEEEEC---TTSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTC
T ss_pred HHHHHhhhcccceeeeeec---CCCc--EEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCE
Confidence 111112222222222332 2333 3455655543 33333332 667788888876544 2235779
Q ss_pred EEecCccchHHHHHHHHhhh
Q psy3270 368 VLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 368 iLvGG~s~~p~v~~~l~~~f 387 (655)
+|+||+|.+|++.++|...+
T Consensus 149 vl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 149 VLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EEESGGGCSTTHHHHHHHHH
T ss_pred EEECcccCCCCHHHHHHHHH
Confidence 99999999999999998876
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.031 Score=50.71 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=46.4
Q ss_pred ecHHHHHHHhhH-HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHh----hh--CCCcccCCCCchhHH
Q psy3270 330 ITRARFEELCMD-LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD----FF--NGKSLNLSINPDEAV 402 (655)
Q Consensus 330 itr~~~e~~~~~-~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~----~f--~~~~v~~~~~p~~av 402 (655)
++++++..-+.. +.+-+...+..+.+..+ ++.|+++||.+....++..+.+ ++ .+.++..+.+...+.
T Consensus 128 ~~~~DiaaS~q~~v~~~l~~~a~~aa~~~~-----~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~g 202 (212)
T d2i7na2 128 ISKEDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFG 202 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhH
Confidence 344444433222 23334444444444444 6779999998777666665543 34 244566777899999
Q ss_pred HhHHHHHH
Q psy3270 403 AYGAAVQA 410 (655)
Q Consensus 403 a~GAa~~a 410 (655)
|.||++.-
T Consensus 203 alGA~l~~ 210 (212)
T d2i7na2 203 AVGALLEL 210 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998754
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=95.75 E-value=0.0046 Score=57.69 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=43.9
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.+.||.++.+.+.+.+.+.+ +.++....++ ++.++|||+.|+.-.+
T Consensus 147 ~~~~i~~~GG~s~s~~~~Qi~Advl-g~~v~~~~~~-e~~alGaA~la~~~~G 197 (235)
T d1r59o2 147 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRAANL-ETTALGAAYLAGLAVG 197 (235)
T ss_dssp CCSEEEEEESTTSCHHHHHHHHHHH-SSEEEEESCC-CTTTHHHHHHHHHHHT
T ss_pred CCcEEEecCcchhCHHHHhhhhhcc-ceeeeecccc-chHHHHHHHHHHHHcC
Confidence 4678999999999999999999999 6778776555 5889999999987766
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=94.28 E-value=0.091 Score=46.77 Aligned_cols=145 Identities=11% Similarity=-0.049 Sum_probs=71.9
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCc-eEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccch-hHHHHhhccccccC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVS-EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEP-TAAALAYGLDKNLK 140 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~-~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~-~Aaa~~~~~~~~~~ 140 (655)
.+.-.+-++..++++++.||+.+|.++. .+++++++......+.. .....+. ..+.+++. .-..+..+......
T Consensus 43 ~I~d~~~~~~~I~~~I~~aE~~a~~~i~~~v~v~~~~~~~~~~~~~---~~~~~~~-~~~~I~~~di~~l~~~a~~~~~~ 118 (193)
T d1e4ft1 43 EIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTV---IERDFGE-EKRSITLDILSEMQSEALEKLKE 118 (193)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHTSCCCSCEEEEECCTTCEEEEEE---EEEECCS-SCEECCHHHHHHHHHHHHHHHHH
T ss_pred eEEeHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEcCceeEEEEEE---EEEEecC-CCceeCHHHHHHHHHHhhhhcCC
Confidence 4566667889999999999999999994 78888877631100000 0000000 00011111 11111111111111
Q ss_pred CCeeEEEEeccccchhhH-HHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHc
Q psy3270 141 GEKNVLIFDLGGGTFDVS-MREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAY 215 (655)
Q Consensus 141 ~~~~~~~~d~g~~~~~~~-l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~ 215 (655)
.+...+...+....+|.. ....+-...|. .+.-.++++| ....+.+.+|.+.+|+++..++.+|.|+|.+.
T Consensus 119 ~~~~ilh~ip~~y~iD~~~~v~nPiGm~g~~L~~~~~~i~~~----~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 119 NGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVP----LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp TTEEEEEEEEEEEEETTTEEESCCTTCEESEEEEEEEEEEEE----HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred CCeEEEEEEcceEEEecccccCCccCCCccEEEEEEEEEEEc----HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 112222222222222210 00001111111 1222233333 45688999999999999999999999999874
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=92.28 E-value=0.07 Score=49.57 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=39.0
Q ss_pred CcceEEEecCc-cchHHHHHHHHhhh--CCCcccCCCCchhHHHhHHHHHH
Q psy3270 363 SIHDVVLVGGS-IRIPKIQKMLQDFF--NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 363 ~i~~ViLvGG~-s~~p~v~~~l~~~f--~~~~v~~~~~p~~ava~GAa~~a 410 (655)
++..|++.||. +..|.+++.+++++ .+.++..+.+++.+-|+|||+++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 34678999985 77999999999988 34566778889999999999764
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=89.61 E-value=0.23 Score=43.45 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=29.9
Q ss_pred CceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHH
Q psy3270 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRL 270 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l 270 (655)
+..++|+|+|||+|.+++++ ++......+ .++|.-.+.+.+
T Consensus 2 e~~~lviDIGGGStEli~~~--~~~i~~~~S----l~lG~vrl~e~f 42 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK--GYKVREVIS----LPIGIVNLTETF 42 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE--TTEEEEEEE----ECCCHHHHHHHH
T ss_pred CCCEEEEEeCCChHhhEEee--CCceeeEEE----eecceEEeeccc
Confidence 46799999999999999875 442333333 568988877665
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=0.49 Score=40.97 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=28.1
Q ss_pred ceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHH
Q psy3270 225 KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRL 270 (655)
Q Consensus 225 ~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l 270 (655)
...||+|+|||+|.+++++ ++......+ .++|.-.+.+.+
T Consensus 2 gr~Lv~DIGGGStEl~~~~--~~~~~~~~S----l~lG~vrl~e~~ 41 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGE--NFEPILVES----RRMGCVSFAQLY 41 (177)
T ss_dssp SCEEEEEECSSCEEEEEEE--TTEEEEEEE----ESCCHHHHHHHH
T ss_pred CCEEEEEeCCChhheEEEE--CCcEeEEEE----eccceEEeeccc
Confidence 3579999999999999874 442333333 579987776655
|
| >d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=81.28 E-value=2.2 Score=36.11 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=33.5
Q ss_pred CcceEEEecCccc-hHHHHHHHHhhhC-------CCcccCCCCchhHHHhHHHHHHH
Q psy3270 363 SIHDVVLVGGSIR-IPKIQKMLQDFFN-------GKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 363 ~i~~ViLvGG~s~-~p~v~~~l~~~f~-------~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
+++.|+|-||.++ .+.+.+.+++.+. ..++......+.+.++|||+++.
T Consensus 103 dPe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~~ 159 (169)
T d2hoea2 103 GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 159 (169)
T ss_dssp CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999886 4666666655541 12344445667899999999874
|