Psyllid ID: psy3274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MKARHIYICEYHKCLIQSVRNKRRRKDSEDDSNENDESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHEcccccccccccccccccc
Coil and Loop (DISEMBL)
MKARHIYICEYHKCLIQSVrnkrrrkdseddsnendespdvdlfQLQVNTLRRYKKYFKvtsrpglnkAQLAETLLKHfktipvveKDVLSFFFYTVKSntnkldqkngntgent
Flexible Loop (DISEMBL)
mkarhiyiceyhkcliqsvrnkrrrkdseddsnendespdvdlfqlqvNTLRRYKKYfkvtsrpglnkaQLAETLLKHFKTIPVVEKDVLSFFFYTVksntnkldqkngntgent
Low Complexity Region (SEG)
MKARHIYICEYHKCLIQSVRNKRRRKdseddsnendesPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT
Disordered region (IsUnstruct)
****HIYICEYHKCLIQS***********************DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVK*****************
Disordered Region (DISOPRED)
***RHIYICEYHK****************************DLFQLQVNTLRRYKKY***************ETLLKHFKTIPVVEKDVLSFFFYTVK*****************
Disordered Region (DISEMBL)
MKARHIYICEYHKCLIQSV*******************PDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK********
Disordered Region (DISPRO)
*KARHIYICEYHKCLIQSVRN***************ESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSN***************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKARHIYICEYHKCLIQSVRNKRRRKDSEDDSNENDESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q17Q39	173	Histone deacetylase compl	N/A	N/A	0.982	0.653	0.675	3e-42
Q7PXY4	174	Histone deacetylase compl	yes	N/A	0.982	0.649	0.666	2e-41
Q29IK8	173	Histone deacetylase compl	yes	N/A	0.965	0.641	0.632	1e-36
Q9VXB3	173	Histone deacetylase compl	yes	N/A	0.913	0.606	0.648	5e-36
Q28H91	181	Histone deacetylase compl	yes	N/A	0.913	0.580	0.648	8e-35
Q2TAD4	181	Histone deacetylase compl	N/A	N/A	0.913	0.580	0.648	8e-35
A4FVD8	181	Histone deacetylase compl	N/A	N/A	0.913	0.580	0.648	1e-34
Q5SQF8	182	Histone deacetylase compl	yes	N/A	0.913	0.576	0.638	2e-34
Q9HAJ7	183	Histone deacetylase compl	yes	N/A	0.921	0.579	0.633	2e-34
Q6NYV5	178	Histone deacetylase compl	yes	N/A	0.947	0.612	0.598	2e-34

>sp|Q17Q39|SAP30_AEDAE Histone deacetylase complex subunit SAP30 homolog OS=Aedes aegypti GN=AAEL000149 PE=3 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 99/114 (86%), Gaps = 1/114 (0%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           ARHIYIC++HK  IQ  R KRRR+DSEDDSNE D + P+VDL+QLQVNTLRRYK+++KV+
Sbjct: 60  ARHIYICDFHKGRIQCARTKRRRRDSEDDSNETDTDLPEVDLYQLQVNTLRRYKRFYKVS 119

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
           +RPG+NKAQL+ET++KHFKTIP+ EK++L++F Y VKSN+NKLDQKN  + E T
Sbjct: 120 TRPGINKAQLSETIMKHFKTIPIKEKEILTYFIYMVKSNSNKLDQKNNTSNEAT 173

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).
Aedes aegypti (taxid: 7159)

>sp|Q7PXY4|SAP30_ANOGA Histone deacetylase complex subunit SAP30 homolog OS=Anopheles gambiae GN=AGAP001654 PE=3 SV=4

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 97/114 (85%), Gaps = 1/114 (0%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           ARHIYIC++HK  IQ  R KRRR+DSEDDSNE D + P+VDL+QLQVNTLRRYK+++KV+
Sbjct: 61  ARHIYICDFHKARIQCARTKRRRRDSEDDSNETDTDLPEVDLYQLQVNTLRRYKRFYKVS 120

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
           +RP  NKAQL+ET++KHFKTIP+ EK++L++F Y VKSN+NKLDQKN  + E T
Sbjct: 121 TRPSSNKAQLSETIMKHFKTIPIKEKEILTYFIYMVKSNSNKLDQKNNASAEAT 174

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Anopheles gambiae (taxid: 7165)

>sp|Q29IK8|SAP30_DROPS Histone deacetylase complex subunit SAP30 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sap30 PE=3 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 93/117 (79%), Gaps = 6/117 (5%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND----ESPDVDLFQLQVNTLRRYKKYF 58
           A+HIYIC++HK  IQSVR KRRRKDSEDDSNE D    E PD  L+QL V+TLRRYK++F
Sbjct: 59  AQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD--LYQLSVSTLRRYKRHF 116

Query: 59  KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
           KV +R G+ +AQLA+T++KHFKTIP+ EK++++FF Y VK  TNKLDQKNG   + T
Sbjct: 117 KVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGTNKLDQKNGIGNDTT 173

Component of the class 1 Sin3A-histone deacetylase (Rpd3) complex (HDAC). Appears to be a non-essential subunit of this complex which is not required for cell cycle regulation of progression through the G2 phase of the cell cycle.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VXB3|SAP30_DROME Histone deacetylase complex subunit SAP30 homolog OS=Drosophila melanogaster GN=Sap30 PE=1 SV=1

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/111 (64%), Positives = 91/111 (81%), Gaps = 6/111 (5%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND----ESPDVDLFQLQVNTLRRYKKYF 58
           A+HIYIC++HK  IQSVR KRRRKDSEDDSNE D    E PD  L+QL V+TLRRYK++F
Sbjct: 59  AQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD--LYQLGVSTLRRYKRHF 116

Query: 59  KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNG 109
           KV +R G+ +AQLA+T++KHFKTIP+ EK++++FF Y VK  +NKLDQKNG
Sbjct: 117 KVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGSNKLDQKNG 167

Component of the class 1 Sin3A-histone deacetylase (Rpd3) complex (HDAC). Appears to be a non-essential subunit of this complex which is not required for cell cycle regulation of progression through the G2 phase of the cell cycle.

Drosophila melanogaster (taxid: 7227)

>sp|Q28H91|SP30L_XENTR Histone deacetylase complex subunit SAP30L OS=Xenopus tropicalis GN=sap30l PE=2 SV=1

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 4   RHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFKV 60
           RH+YIC++HK  IQSVRNKR+RK S+D  DS E++ + P+VDLFQLQVNTLRRYK+Y+K+
Sbjct: 66  RHLYICDFHKNYIQSVRNKRKRKTSDDGGDSPEHETDVPEVDLFQLQVNTLRRYKRYYKL 125

Query: 61  TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
            +RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 126 QTRPGLNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 173

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Xenopus tropicalis (taxid: 8364)

>sp|Q2TAD4|S30LB_XENLA Histone deacetylase complex subunit SAP30L-B OS=Xenopus laevis GN=sap30l-b PE=2 SV=1

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 4   RHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFKV 60
           RH+YIC++HK  IQSVRNKR+RK S+D  DS E++ + P+VDLFQLQVNTLRRYK+Y+K+
Sbjct: 66  RHLYICDFHKNYIQSVRNKRKRKTSDDGGDSPEHETDVPEVDLFQLQVNTLRRYKRYYKL 125

Query: 61  TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
            +RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 126 QTRPGLNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 173

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Xenopus laevis (taxid: 8355)

>sp|A4FVD8|S30LA_XENLA Histone deacetylase complex subunit SAP30L-A OS=Xenopus laevis GN=sap30l-a PE=2 SV=1

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 4   RHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFKV 60
           RH+YIC++HK  IQSVRNKR+RK S+D  DS E++ + P+VDLFQLQVNTLRRYK+Y+K+
Sbjct: 66  RHLYICDFHKNYIQSVRNKRKRKTSDDGGDSPEHETDIPEVDLFQLQVNTLRRYKRYYKL 125

Query: 61  TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
            +RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 126 QTRPGLNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 173

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Xenopus laevis (taxid: 8355)

>sp|Q5SQF8|SP30L_MOUSE Histone deacetylase complex subunit SAP30L OS=Mus musculus GN=Sap30l PE=1 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 90/108 (83%), Gaps = 3/108 (2%)

Query: 4   RHIYICEYHKCLIQSVRNKRRRKDSED--DSNENDES-PDVDLFQLQVNTLRRYKKYFKV 60
           RH+YIC++HK  IQSVRNKR+RK S+D  DS E+D   P+VDLFQLQVNTLRRYK+++K+
Sbjct: 68  RHLYICDFHKNFIQSVRNKRKRKASDDGGDSPEHDADIPEVDLFQLQVNTLRRYKRHYKL 127

Query: 61  TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
            +RPG NKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 128 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 175

Involved in the functional recruitment of the class 1 Sin3-histone deacetylase complex (HDAC) to the nucleolus.

Mus musculus (taxid: 10090)

>sp|Q9HAJ7|SP30L_HUMAN Histone deacetylase complex subunit SAP30L OS=Homo sapiens GN=SAP30L PE=1 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 91/109 (83%), Gaps = 3/109 (2%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFK 59
            RH+YIC++HK  IQSVRNKR+RK S+D  DS E+D + P+VDLFQLQVNTLRRYK+++K
Sbjct: 68  VRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLRRYKRHYK 127

Query: 60  VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
           + +RPG NKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 128 LQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176

Involved in the functional recruitment of the class 1 Sin3-histone deacetylase complex (HDAC) to the nucleolus.

Homo sapiens (taxid: 9606)

>sp|Q6NYV5|SP30L_DANRE Histone deacetylase complex subunit SAP30L OS=Danio rerio GN=sap30l PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 90/112 (80%), Gaps = 3/112 (2%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND---ESPDVDLFQLQVNTLRRYKKYFK 59
            RH+YIC++HK  IQSVRNKR+RK S+D     D   E P+VDLFQLQVNTLRRYK+++K
Sbjct: 63  VRHLYICDFHKNFIQSVRNKRKRKTSDDGGESPDHEVEVPEVDLFQLQVNTLRRYKRHYK 122

Query: 60  VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNT 111
           + +RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKS+ ++LDQK+ ++
Sbjct: 123 IQTRPGLNKAQLAETVSRHFRNIPVNEKETLTYFIYMVKSSKSRLDQKSDSS 174

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
157112936	173	sap30 [Aedes aegypti] gi|121957826|sp|Q1	0.982	0.653	0.675	1e-40
91080611	171	PREDICTED: similar to sap30 [Tribolium c	0.930	0.625	0.722	3e-40
242003303	172	histone deacetylase complex subunit SAP3	0.973	0.651	0.701	7e-40
347966326	174	AGAP001654-PA [Anopheles gambiae str. PE	0.982	0.649	0.666	9e-40
332375674	172	unknown [Dendroctonus ponderosae]	0.930	0.622	0.712	2e-39
346466187	284	hypothetical protein [Amblyomma maculatu	0.930	0.376	0.681	4e-39
427795127	180	Putative sap30-like protein, partial [Rh	0.939	0.6	0.675	6e-39
322797835	180	hypothetical protein SINV_05351 [Solenop	0.982	0.627	0.661	1e-38
321478263	185	hypothetical protein DAPPUDRAFT_205604 [	0.913	0.567	0.683	2e-38
241122590	180	sap30, putative [Ixodes scapularis] gi|2	0.921	0.588	0.660	6e-37

>gi|157112936|ref|XP_001657686.1| sap30 [Aedes aegypti] gi|121957826|sp|Q17Q39.1|SAP30_AEDAE RecName: Full=Histone deacetylase complex subunit SAP30 homolog gi|108884652|gb|EAT48877.1| AAEL000149-PA [Aedes aegypti]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 99/114 (86%), Gaps = 1/114 (0%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           ARHIYIC++HK  IQ  R KRRR+DSEDDSNE D + P+VDL+QLQVNTLRRYK+++KV+
Sbjct: 60  ARHIYICDFHKGRIQCARTKRRRRDSEDDSNETDTDLPEVDLYQLQVNTLRRYKRFYKVS 119

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
           +RPG+NKAQL+ET++KHFKTIP+ EK++L++F Y VKSN+NKLDQKN  + E T
Sbjct: 120 TRPGINKAQLSETIMKHFKTIPIKEKEILTYFIYMVKSNSNKLDQKNNTSNEAT 173

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080611|ref|XP_974119.1| PREDICTED: similar to sap30 [Tribolium castaneum] gi|270005819|gb|EFA02267.1| hypothetical protein TcasGA2_TC007931 [Tribolium castaneum]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 97/108 (89%), Gaps = 1/108 (0%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           A+HIYIC++HK +IQ  R KRRRKDSEDDSNE D + P+VDLFQL VNTLRRYK+++KV+
Sbjct: 58  AKHIYICDFHKMIIQCARTKRRRKDSEDDSNETDTDVPEVDLFQLGVNTLRRYKRHYKVS 117

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNG 109
           +RPGLNKAQLA+TL+KHFK+I V EK+V++FF YTVK+N+NKLDQKNG
Sbjct: 118 ARPGLNKAQLADTLMKHFKSIQVKEKEVVTFFIYTVKTNSNKLDQKNG 165

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003303|ref|XP_002422687.1| histone deacetylase complex subunit SAP30, putative [Pediculus humanus corporis] gi|212505509|gb|EEB09949.1| histone deacetylase complex subunit SAP30, putative [Pediculus humanus corporis]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 97/114 (85%), Gaps = 2/114 (1%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           A+HIYIC+YHK +IQS R KRRRKDSEDDSNE D + P++DL QLQ+NTL+RYKK++K+ 
Sbjct: 60  AKHIYICDYHKGVIQSARTKRRRKDSEDDSNEQDIDMPEIDLNQLQLNTLKRYKKHYKIP 119

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
           S+P +NK QLAETL+KH KTIPVVEK+ L+FF Y VKSN+NKLDQKNG   ENT
Sbjct: 120 SKPTMNKTQLAETLMKHLKTIPVVEKETLTFFIYMVKSNSNKLDQKNG-VNENT 172

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966326|ref|XP_321441.4| AGAP001654-PA [Anopheles gambiae str. PEST] gi|384872702|sp|Q7PXY4.4|SAP30_ANOGA RecName: Full=Histone deacetylase complex subunit SAP30 homolog gi|333470110|gb|EAA00919.4| AGAP001654-PA [Anopheles gambiae str. PEST]

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 97/114 (85%), Gaps = 1/114 (0%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           ARHIYIC++HK  IQ  R KRRR+DSEDDSNE D + P+VDL+QLQVNTLRRYK+++KV+
Sbjct: 61  ARHIYICDFHKARIQCARTKRRRRDSEDDSNETDTDLPEVDLYQLQVNTLRRYKRFYKVS 120

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
           +RP  NKAQL+ET++KHFKTIP+ EK++L++F Y VKSN+NKLDQKN  + E T
Sbjct: 121 TRPSSNKAQLSETIMKHFKTIPIKEKEILTYFIYMVKSNSNKLDQKNNASAEAT 174

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375674|gb|AEE62978.1| unknown [Dendroctonus ponderosae]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 94/108 (87%), Gaps = 1/108 (0%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
           ARHIYIC++HK +IQ  R KRRRK+SE+DSNE D + P+VDL+ LQVNTLRRYK+++KV 
Sbjct: 58  ARHIYICDFHKMIIQCARTKRRRKESEEDSNETDTDIPEVDLYHLQVNTLRRYKRHYKVP 117

Query: 62  SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNG 109
           +RPGLNKAQLA+ L+KHFKTIPV E DV++FF YTVK+N NKLDQKNG
Sbjct: 118 TRPGLNKAQLADNLMKHFKTIPVKETDVVTFFIYTVKTNGNKLDQKNG 165

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346466187|gb|AEO32938.1| hypothetical protein [Amblyomma maculatum]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 94/110 (85%), Gaps = 3/110 (2%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNENDES---PDVDLFQLQVNTLRRYKKYFK 59
           ARHIYIC+YHK +IQSVR KR+RKDSEDD+  N++    P+VDLFQLQVNTLRRYK+++K
Sbjct: 171 ARHIYICDYHKGVIQSVRTKRKRKDSEDDNGSNEQEMDIPEVDLFQLQVNTLRRYKRHYK 230

Query: 60  VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNG 109
           V  RPGLNKA+LA+TL +HF+TIP+ EK+ ++FF Y VK+N NKLDQKNG
Sbjct: 231 VPMRPGLNKAELADTLARHFRTIPIAEKEAITFFIYMVKNNKNKLDQKNG 280

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795127|gb|JAA63015.1| Putative sap30-like protein, partial [Rhipicephalus pulchellus]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNENDES---PDVDLFQLQVNTLRRYKKYFK 59
           ARHIYIC+YHK +IQSVR KR+RKDSEDD+  N++    P+VDLFQLQVNTLRRYK+++K
Sbjct: 67  ARHIYICDYHKGVIQSVRTKRKRKDSEDDNGSNEQEMDIPEVDLFQLQVNTLRRYKRHYK 126

Query: 60  VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGN 110
           V  RPGLNKA+LA+TL +HF+TIP+ EK+ ++FF Y VK+N NKLDQKNG+
Sbjct: 127 VPMRPGLNKAELADTLARHFRTIPIAEKEAITFFIYMVKNNKNKLDQKNGS 177

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797835|gb|EFZ19743.1| hypothetical protein SINV_05351 [Solenopsis invicta]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 99/121 (81%), Gaps = 8/121 (6%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRR-------KDSEDDSNEND-ESPDVDLFQLQVNTLRRY 54
           ARHIYIC+YHK +IQ  R K+++       KDSE+DS E D + P+VDLFQLQV TLRRY
Sbjct: 59  ARHIYICDYHKQVIQCARTKQQQQQQQRRRKDSEEDSGETDNDVPEVDLFQLQVGTLRRY 118

Query: 55  KKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGEN 114
           K+++KV++RPGLNKAQLA+TL+KHFKTIPVVEK+ LSFF YTVK+N NKLDQKNG +  +
Sbjct: 119 KRHYKVSTRPGLNKAQLADTLMKHFKTIPVVEKEALSFFIYTVKTNANKLDQKNGLSSSD 178

Query: 115 T 115
           T
Sbjct: 179 T 179

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478263|gb|EFX89220.1| hypothetical protein DAPPUDRAFT_205604 [Daphnia pulex]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 95/117 (81%), Gaps = 12/117 (10%)

Query: 3   ARHIYICEYHKCLIQSVR-NKRRRKDSEDDSNEND-----------ESPDVDLFQLQVNT 50
           ARHIYIC+YHK LIQSVR  +R+RKDSEDDSNE D           ++P+VDLFQLQ+NT
Sbjct: 69  ARHIYICDYHKSLIQSVRVRQRKRKDSEDDSNETDRDTLSLQERERDAPEVDLFQLQINT 128

Query: 51  LRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
           LRRYK+++KV +RPGLNKAQLAETL++HF+TIPVVEK+ L  F YTVKSN NKLD K
Sbjct: 129 LRRYKRHYKVPTRPGLNKAQLAETLMRHFRTIPVVEKEALHSFLYTVKSNKNKLDLK 185

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241122590|ref|XP_002403592.1| sap30, putative [Ixodes scapularis] gi|215493482|gb|EEC03123.1| sap30, putative [Ixodes scapularis]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 92/109 (84%), Gaps = 3/109 (2%)

Query: 3   ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNENDES---PDVDLFQLQVNTLRRYKKYFK 59
           A+HIYIC+YHK +IQSVR KR+RKDSEDD+  N++    P+VDLFQLQVNTLRRYK+++K
Sbjct: 67  AQHIYICDYHKGVIQSVRTKRKRKDSEDDNGSNEQEMDIPEVDLFQLQVNTLRRYKRHYK 126

Query: 60  VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
           V  RPGLNKA+LA+ L +HF+TIP+ EK+ ++FF Y VK+N NKLDQKN
Sbjct: 127 VPMRPGLNKAELADNLARHFRTIPIAEKEAITFFIYMVKNNRNKLDQKN 175

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
ZFIN|ZDB-GENE-030131-5287	178	sap30l "sap30-like" [Danio rer	0.939	0.606	0.567	1.8e-30
UNIPROTKB|Q9HAJ7	183	SAP30L "Histone deacetylase co	0.913	0.573	0.583	2.3e-30
MGI|MGI:1354709	182	Sap30l "SAP30-like" [Mus muscu	0.913	0.576	0.583	2.3e-30
UNIPROTKB|E1C1G4	214	SAP30 "Uncharacterized protein	0.913	0.490	0.583	4.4e-29
UNIPROTKB|E2QY22	220	SAP30 "Uncharacterized protein	0.913	0.477	0.577	4.4e-29
UNIPROTKB|Q29IK8	173	Sap30 "Histone deacetylase com	0.973	0.647	0.556	4.4e-29
UNIPROTKB|I3LU53	124	SAP30 "Uncharacterized protein	0.921	0.854	0.572	5.6e-29
UNIPROTKB|E1B806	220	SAP30 "Uncharacterized protein	0.913	0.477	0.577	7.1e-29
UNIPROTKB|O75446	220	SAP30 "Histone deacetylase com	0.913	0.477	0.577	7.1e-29
FB|FBgn0030788	173	Sap30 "SIN3-associated polypep	0.973	0.647	0.547	1.9e-28

ZFIN|ZDB-GENE-030131-5287 sap30l "sap30-like" [Danio rerio (taxid:7955)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 63/111 (56%), Positives = 85/111 (76%)

Query:     4 RHIYICEYHKCLIQSVRNKRRRKXXXXXXXX---XXXXPDVDLFQLQVNTLRRYKKYFKV 60
             RH+YIC++HK  IQSVRNKR+RK               P+VDLFQLQVNTLRRYK+++K+
Sbjct:    64 RHLYICDFHKNFIQSVRNKRKRKTSDDGGESPDHEVEVPEVDLFQLQVNTLRRYKRHYKI 123

Query:    61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNT 111
              +RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKS+ ++LDQK+ ++
Sbjct:   124 QTRPGLNKAQLAETVSRHFRNIPVNEKETLTYFIYMVKSSKSRLDQKSDSS 174

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9HAJ7 SAP30L "Histone deacetylase complex subunit SAP30L" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 63/108 (58%), Positives = 82/108 (75%)

Query:     4 RHIYICEYHKCLIQSVRNKRRRKXXXXXXXX---XXXXPDVDLFQLQVNTLRRYKKYFKV 60
             RH+YIC++HK  IQSVRNKR+RK               P+VDLFQLQVNTLRRYK+++K+
Sbjct:    69 RHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLRRYKRHYKL 128

Query:    61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
              +RPG NKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct:   129 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1354709 Sap30l "SAP30-like" [Mus musculus (taxid:10090)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 63/108 (58%), Positives = 82/108 (75%)

Query:     4 RHIYICEYHKCLIQSVRNKRRRKXXXXXXXX---XXXXPDVDLFQLQVNTLRRYKKYFKV 60
             RH+YIC++HK  IQSVRNKR+RK               P+VDLFQLQVNTLRRYK+++K+
Sbjct:    68 RHLYICDFHKNFIQSVRNKRKRKASDDGGDSPEHDADIPEVDLFQLQVNTLRRYKRHYKL 127

Query:    61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
              +RPG NKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct:   128 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 175

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C1G4 SAP30 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 63/108 (58%), Positives = 81/108 (75%)

Query:     3 ARHIYICEYHKCLIQSVRNKRRRKXXXXXXXX---XXXXPDVDLFQLQVNTLRRYKKYFK 59
             ARH+YIC++HK LIQSVRN+R+RK               P+VDL+QLQVNTLRRYK++FK
Sbjct:   101 ARHLYICDFHKNLIQSVRNRRKRKGSDDDGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFK 160

Query:    60 VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
             + +RPGLNKAQL E +  HF+TIPV EKD L++F Y+VK++ NK D K
Sbjct:   161 LQTRPGLNKAQLVEIIGCHFRTIPVNEKDTLAYFIYSVKNDKNKPDLK 208

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

UNIPROTKB|E2QY22 SAP30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 63/109 (57%), Positives = 82/109 (75%)

Query:     3 ARHIYICEYHKCLIQSVRNKRRRKXXXXXXXXX----XXXPDVDLFQLQVNTLRRYKKYF 58
             ARH+YIC+YHK LIQSVRN+R+RK                P+VDL+QLQVNTLRRYK++F
Sbjct:   106 ARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHF 165

Query:    59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
             K+++RPGLNKAQL E +  HF++IPV EKD L++F Y+VK++ NK D K
Sbjct:   166 KLSTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 214

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|Q29IK8 Sap30 "Histone deacetylase complex subunit SAP30 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/115 (55%), Positives = 83/115 (72%)

Query:     3 ARHIYICEYHKCLIQSVRNKRRRKXXXXXXXXXXXXPDV--DLFQLQVNTLRRYKKYFKV 60
             A+HIYIC++HK  IQSVR KRRRK                 DL+QL V+TLRRYK++FKV
Sbjct:    59 AQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPDLYQLSVSTLRRYKRHFKV 118

Query:    61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
              +R G+ +AQLA+T++KHFKTIP+ EK++++FF Y VK  TNKLDQKNG  G +T
Sbjct:   119 QTRQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGTNKLDQKNG-IGNDT 172

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=ISS

UNIPROTKB|I3LU53 SAP30 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/110 (57%), Positives = 82/110 (74%)

Query:     2 KARHIYICEYHKCLIQSVRNKRRRKXXXXXXXXX----XXXPDVDLFQLQVNTLRRYKKY 57
             +ARH+YIC+YHK LIQSVRN+R+RK                P+VDL+QLQVNTLRRYK++
Sbjct:     9 QARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRH 68

Query:    58 FKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
             FK+ +RPGLNKAQL E +  HF++IPV EKD L++F Y+VK++ NK D K
Sbjct:    69 FKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 118

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|E1B806 SAP30 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 63/109 (57%), Positives = 81/109 (74%)

Query:     3 ARHIYICEYHKCLIQSVRNKRRRKXXXXXXXXX----XXXPDVDLFQLQVNTLRRYKKYF 58
             ARH+YIC+YHK LIQSVRN+R+RK                P+VDL+QLQVNTLRRYK++F
Sbjct:   106 ARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHF 165

Query:    59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
             K+ +RPGLNKAQL E +  HF++IPV EKD L++F Y+VK++ NK D K
Sbjct:   166 KLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 214

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|O75446 SAP30 "Histone deacetylase complex subunit SAP30" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 63/109 (57%), Positives = 81/109 (74%)

Query:     3 ARHIYICEYHKCLIQSVRNKRRRKXXXXXXXXX----XXXPDVDLFQLQVNTLRRYKKYF 58
             ARH+YIC+YHK LIQSVRN+R+RK                P+VDL+QLQVNTLRRYK++F
Sbjct:   106 ARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHF 165

Query:    59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
             K+ +RPGLNKAQL E +  HF++IPV EKD L++F Y+VK++ NK D K
Sbjct:   166 KLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 214

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

FB|FBgn0030788 Sap30 "SIN3-associated polypeptide 30" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 63/115 (54%), Positives = 83/115 (72%)

Query:     3 ARHIYICEYHKCLIQSVRNKRRRKXXXXXXXXXXXXPDV--DLFQLQVNTLRRYKKYFKV 60
             A+HIYIC++HK  IQSVR KRRRK                 DL+QL V+TLRRYK++FKV
Sbjct:    59 AQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPDLYQLGVSTLRRYKRHFKV 118

Query:    61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
              +R G+ +AQLA+T++KHFKTIP+ EK++++FF Y VK  +NKLDQKNG  G +T
Sbjct:   119 QTRQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGSNKLDQKNG-LGNDT 172

GO:0003714 "transcription corepressor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28H91	SP30L_XENTR	No assigned EC number	0.6481	0.9130	0.5801	yes	N/A
Q29IK8	SAP30_DROPS	No assigned EC number	0.6324	0.9652	0.6416	yes	N/A
Q7PXY4	SAP30_ANOGA	No assigned EC number	0.6666	0.9826	0.6494	yes	N/A
Q5SQF8	SP30L_MOUSE	No assigned EC number	0.6388	0.9130	0.5769	yes	N/A
Q9VXB3	SAP30_DROME	No assigned EC number	0.6486	0.9130	0.6069	yes	N/A
Q9HAJ7	SP30L_HUMAN	No assigned EC number	0.6330	0.9217	0.5792	yes	N/A
Q6NYV5	SP30L_DANRE	No assigned EC number	0.5982	0.9478	0.6123	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam13867	53	pfam13867, SAP30_Sin3_bdg, Sin3 binding region of	6e-21
pfam13866	68	pfam13866, zf-SAP30, SAP30 zinc-finger	3e-06

>gnl|CDD|206038 pfam13867, SAP30_Sin3_bdg, Sin3 binding region of histone deacetylase complex subunit SAP30

 Score = 78.5 bits (194), Expect = 6e-21
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 46 LQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVK 98
          L VNTLRRYK++FK+ +RP  +K QLAE + KHF + P+ E++V++ F Y VK
Sbjct: 1  LGVNTLRRYKRHFKLVTRPNSSKEQLAEAVQKHFMSQPLDEQEVIAGFLYAVK 53

This C-terminal domain of the SAP30 proteins appears to be the binding region for Sin3. Length = 53

>gnl|CDD|206037 pfam13866, zf-SAP30, SAP30 zinc-finger

 Score = 41.1 bits (96), Expect = 3e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)

Query: 3  ARHIYICEYHKCLIQSVRNKRRRKDS 28
          ARH+YIC++HK LIQSVRN+R+RK S
Sbjct: 43 ARHLYICDFHKNLIQSVRNRRKRKGS 68

SAP30 is a subunit of the histone deacetylase complex, and this domain is a zinc-finger. Solution of the structure shows a novel fold comprising two beta-strands and two alpha-helices with the zinc organising centre showing remote resemblance to the treble clef motif. In silico analysis of the structure revealed a highly conserved surface dominated by basic residues. NMR-based analysis of potential ligands for the SAP30 zn-finger motif indicated a strong preference for nucleic acid substrates. The zinc-finger of SAP3 probably functions as a double-stranded DNA-binding motif, thereby expanding the known functions of both SAP30 and the mammalian Sin3 co-repressor complex. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF13867	53	SAP30_Sin3_bdg: Sin3 binding region of histone dea	99.92
PF13866	78	zf-SAP30: SAP30 zinc-finger; PDB: 2KDP_A 2LD7_A.	99.45
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	97.29
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	94.47
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	90.36
PF07498	43	Rho_N: Rho termination factor, N-terminal domain;	87.76
PF12949	35	HeH: HeH/LEM domain; PDB: 2OUT_A.	85.0
TIGR00578	584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	83.11

>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A

Probab=99.92  E-value=7.6e-26  Score=144.28  Aligned_cols=53  Identities=51%  Similarity=0.799  Sum_probs=41.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCCChHHHHHHHHHHHh
Q psy3274          46 LQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVK   98 (115)
Q Consensus        46 L~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV~E~evI~~Fiy~VK   98 (115)
                      |+++|||||+++|+|+..|+++|+|||++|++||+++||+|+|||++|||+||
T Consensus         1 L~~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~s~~v~E~evI~~Fly~vk   53 (53)
T PF13867_consen    1 LQTPTLRRYKKHYKLPERPRSSKEQLANAVRKHFNSQPVDENEVIANFLYKVK   53 (53)
T ss_dssp             S-HHHHHHHHHHTT----SS--HHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence            68999999999999999999999999999999999999999999999999997

>PF13866 zf-SAP30: SAP30 zinc-finger; PDB: 2KDP_A 2LD7_A

Probab=99.45  E-value=1.5e-14  Score=99.87  Aligned_cols=29  Identities=79%  Similarity=1.297  Sum_probs=18.1

Q ss_pred             CccceeecccchhhhHHhhhhccCCCCCC
Q psy3274           2 KARHIYICEYHKCLIQSVRNKRRRKDSED   30 (115)
Q Consensus         2 ~a~h~yicd~hk~~iqs~r~~r~~~~s~~   30 (115)
                      +|+|||||||||++|||||++|+|++|||
T Consensus        50 sa~H~YiCd~Hk~~Iqs~R~kr~rk~~ed   78 (78)
T PF13866_consen   50 SARHIYICDFHKNMIQSVRNKRKRKDSED   78 (78)
T ss_dssp             T-S-----HHHHHHHHTTSSS-S-SS--S
T ss_pred             ccchhhHHHHHHHHHhcccccccccccCC
Confidence            68999999999999999999999999986

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=97.29  E-value=0.00071  Score=40.00  Aligned_cols=37  Identities=11%  Similarity=0.155  Sum_probs=34.2

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHhhh
Q psy3274          43 LFQLQVNTLRRYKKYFKVTSRPGL-NKAQLAETLLKHF   79 (115)
Q Consensus        43 f~kL~~~tLrRYkr~f~L~~~p~~-sK~QLa~~V~kHF   79 (115)
                      |+..+.+-|+.|-..+++.+++.. +|+||++.|++|+
T Consensus         1 fdtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~y   38 (38)
T PF10281_consen    1 FDTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKKNY   38 (38)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhC
Confidence            677899999999999999999998 9999999999874

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=94.47  E-value=0.092  Score=30.53  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhh
Q psy3274          43 LFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHF   79 (115)
Q Consensus        43 f~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF   79 (115)
                      |+.|.++.|+.+.+..+|++  +-+|++|++-+..||
T Consensus         1 l~~l~v~eLk~~l~~~gL~~--~G~K~~Li~Rl~~~l   35 (35)
T PF02037_consen    1 LSKLTVAELKEELKERGLST--SGKKAELIERLKEHL   35 (35)
T ss_dssp             TTTSHHHHHHHHHHHTTS-S--TSSHHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHCCCCC--CCCHHHHHHHHHHhC
Confidence            46788999999999999954  455999999999986

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=90.36  E-value=0.92  Score=25.95  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhh
Q psy3274          43 LFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKH   78 (115)
Q Consensus        43 f~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kH   78 (115)
                      ++.+..+.|+...+.++|++  .-+|++|+.-+.+|
T Consensus         1 ~~~l~~~~Lk~~l~~~gl~~--~G~K~~Lv~Rl~~~   34 (35)
T smart00513        1 LAKLKVSELKDELKKRGLST--SGTKAELVDRLLEA   34 (35)
T ss_pred             CCcCcHHHHHHHHHHcCCCC--CCCHHHHHHHHHHh
Confidence            45788999999999999975  44699999998876

>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts

Probab=87.76  E-value=0.84  Score=27.56  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhh
Q psy3274          42 DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKH   78 (115)
Q Consensus        42 Df~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kH   78 (115)
                      ||.+++..-|+.+-+.+++.-...+.|.||+.+|.+.
T Consensus         1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~   37 (43)
T PF07498_consen    1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILKA   37 (43)
T ss_dssp             HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence            4678899999999999999878889999999988765

It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....

>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A

Probab=85.00  E-value=0.89  Score=27.04  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q psy3274          44 FQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLL   76 (115)
Q Consensus        44 ~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~   76 (115)
                      ..|.++-||+.-..+++..+.+..|++|+..+.
T Consensus         2 ~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~   34 (35)
T PF12949_consen    2 KSLTVAQLKRILDEHGIEFPSNAKKAELVALFN   34 (35)
T ss_dssp             TT--SHHHHHHHHHHT---SSS--SHHHHHH--
T ss_pred             CcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHc
Confidence            468899999999999999999999999998764

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)

Probab=83.11  E-value=1.7  Score=38.88  Aligned_cols=37  Identities=32%  Similarity=0.559  Sum_probs=32.2

Q ss_pred             CcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhc
Q psy3274          42 DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFK   80 (115)
Q Consensus        42 Df~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~   80 (115)
                      .|++|+++.|+-|.+.++|.  .+..|++|++.|.+||.
T Consensus       548 ~l~kltv~~Lk~~l~~~g~~--~~~kKadLi~~i~~~~~  584 (584)
T TIGR00578       548 TLGKLTVSVLKDFCRAYGLR--SGSKKQELLDALTKHFK  584 (584)
T ss_pred             ChhhccHHHHHHHHHHcCCC--ccccHHHHHHHHHHHhC
Confidence            67889999999999999876  44569999999999983

Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
2ld7_A	94	Solution Structure Of The Msin3a Pah3-Sap30 Sid Com		1e-20
2kdp_A	71	Solution Structure Of The Sap30 Zinc Finger Motif L		1e-05

>pdb|2LD7|A Chain A, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex Length = 94

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 39  PDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVK 98
           P+VDL+QLQVNTLRRYK++FK+ +RPGLNKAQL E +  HFK+IPV EKD L+ F Y+V+
Sbjct: 20  PEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVR 79
Query: 99  SNTNKLDQK 107
           ++ NK D K
Sbjct: 80  NDKNKSDLK 88

>pdb|2KDP|A Chain A, Solution Structure Of The Sap30 Zinc Finger Motif Length = 71

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 23/24 (95%)
Query: 3  ARHIYICEYHKCLIQSVRNKRRRK 26
          ARH+YIC+YHK LIQSVRN+R+RK
Sbjct: 46 ARHLYICDYHKNLIQSVRNRRKRK 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
2ld7_A	94	Histone deacetylase complex subunit SAP30; transcr	3e-30
2kdp_A	71	Histone deacetylase complex subunit SAP30; SIN3, z	1e-07

>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus} Length = 94

 Score =  102 bits (256), Expect = 3e-30
 Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 27  DSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVV 85
           D   DS   D ++P+VDL+QLQVNTLRRYK++FK+ +RPGLNKAQL E +  HFK+IPV 
Sbjct: 7   DDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVN 66

Query: 86  EKDVLSFFFYTVKSNTNKLDQKNGN 110
           EKD L+ F Y+V+++ NK D K  +
Sbjct: 67  EKDTLTCFIYSVRNDKNKSDLKADS 91

>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens} Length = 71

 Score = 44.7 bits (105), Expect = 1e-07
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query: 3  ARHIYICEYHKCLIQSVRNKRRRKDS 28
          ARH+YIC+YHK LIQSVRN+R+RK S
Sbjct: 46 ARHLYICDYHKNLIQSVRNRRKRKGS 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2ld7_A	94	Histone deacetylase complex subunit SAP30; transcr	100.0
2kdp_A	71	Histone deacetylase complex subunit SAP30; SIN3, z	99.47
2do1_A	55	Nuclear protein HCC-1; SAP domain, structural geno	92.61
2rnn_A	114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	90.28
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	90.26
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	88.27
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	85.5
2kvu_A	75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	84.25

>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}

Probab=100.00  E-value=6.6e-39  Score=225.40  Aligned_cols=90  Identities=53%  Similarity=0.816  Sum_probs=86.4

Q ss_pred             cCCCCCCCCCCCC-CCCccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhhCCc
Q psy3274          24 RRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTN  102 (115)
Q Consensus        24 ~~~~s~~~s~~~d-~~p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV~E~evI~~Fiy~VK~~k~  102 (115)
                      +-|+|++||+++| +.|+|||++|+++|||||+++|+|+++|+++|+|||++|++||+++||+|+|||++|||+||++++
T Consensus         4 ~~~~~~~~~~~~~~~~p~vdf~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~kHF~s~~VdE~evI~~Fly~VK~~~~   83 (94)
T 2ld7_A            4 GSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKN   83 (94)
T ss_dssp             SCCSCSSSSCSCSSCCCCCCCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCSS
T ss_pred             CcccccCCCCcccCCCCCcCHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCc
Confidence            4568999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCC
Q psy3274         103 KLDQKNGNTGE  113 (115)
Q Consensus       103 Kfd~k~~~~~~  113 (115)
                      ||+||+|++++
T Consensus        84 kf~~~~~~~~~   94 (94)
T 2ld7_A           84 KSDLKADSGVH   94 (94)
T ss_dssp             CCCCCCCSCCC
T ss_pred             cccCcCCCCCC
Confidence            99999998753

>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}

Probab=99.47  E-value=5.2e-15  Score=99.35  Aligned_cols=27  Identities=74%  Similarity=1.261  Sum_probs=25.8

Q ss_pred             CccceeecccchhhhHHhhhhccCCCC
Q psy3274           2 KARHIYICEYHKCLIQSVRNKRRRKDS   28 (115)
Q Consensus         2 ~a~h~yicd~hk~~iqs~r~~r~~~~s   28 (115)
                      +|+|||||||||++|||||++|+||+|
T Consensus        45 ~a~HiYICd~HK~~iqs~Rskr~rk~s   71 (71)
T 2kdp_A           45 SARHLYICDYHKNLIQSVRNRRKRKGS   71 (71)
T ss_dssp             TCSCCCCCHHHHHHHHTTSSSCSCSCC
T ss_pred             CCcEEEehhhhhhhhhhhhhhhhhcCC
Confidence            699999999999999999999999976

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=92.61  E-value=0.25  Score=31.04  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             CccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCC
Q psy3274          39 PDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTI   82 (115)
Q Consensus        39 p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~   82 (115)
                      -.+|+++|.+.-|+...+..+|++.  -+|++|++-|+.||..-
T Consensus         6 ~~~~l~klkV~eLK~~L~~rGL~~~--G~KaeLieRL~~~l~~~   47 (55)
T 2do1_A            6 SGVELHKLKLAELKQECLARGLETK--GIKQDLIHRLQAYLEEH   47 (55)
T ss_dssp             CCCCTTTSCHHHHHHHHHHHTCCCC--SCHHHHHHHHHHHHHHT
T ss_pred             cccCHHHCcHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcC
Confidence            4679999999999999999999653  47999999999999765

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}

Probab=90.28  E-value=1  Score=32.12  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             cCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCC----C--hHHHHHHHHHHHhhC
Q psy3274          41 VDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPV----V--EKDVLSFFFYTVKSN  100 (115)
Q Consensus        41 vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV----~--E~evI~~Fiy~VK~~  100 (115)
                      ..+.+|.++-|+.+.+..+|.  ..-.|++|.+-|..||.....    +  -...|...||++...
T Consensus        35 ~~l~kLtVaELK~~cr~~GL~--~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g   98 (114)
T 2rnn_A           35 TLMELLKVSELKDICRSVSFP--VSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKN   98 (114)
T ss_dssp             HHHTTCCHHHHHHHHHHTTCC--TTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHcCCC--cCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcC
Confidence            358899999999999999985  445699999999999987543    2  236677899999863

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=90.26  E-value=0.79  Score=28.18  Aligned_cols=42  Identities=31%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             CCccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcC
Q psy3274          38 SPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKT   81 (115)
Q Consensus        38 ~p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s   81 (115)
                      ...+|+++|.+.-|+...+..+|++  .-+|++|++-++.+...
T Consensus         5 ~s~~~~~klkV~eLK~eLk~RgL~~--~G~Ka~Li~RL~~~~~~   46 (50)
T 1zrj_A            5 SSGMDVRRLKVNELREELQRRGLDT--RGLKAELAERLQAALSG   46 (50)
T ss_dssp             SCCCCGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHHHHCC
T ss_pred             cCcCCHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHhc
Confidence            4578999999999999999999965  45599999999998764

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=88.27  E-value=1.1  Score=27.64  Aligned_cols=40  Identities=23%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             cCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCC
Q psy3274          41 VDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTI   82 (115)
Q Consensus        41 vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~   82 (115)
                      .|+++|.+.-|+...+..+|++  .-+|++|++-+..|+...
T Consensus         3 ~~~~kltV~eLK~~Lk~RGL~~--~G~KadLieRL~~~~~~~   42 (51)
T 1h1j_S            3 ADYSSLTVVQLKDLLTKRNLSV--GGLKNELVQRLIKDDEES   42 (51)
T ss_dssp             CSGGGCCHHHHHHHHHHTTCCC--CSSHHHHHHHHHHHHHHS
T ss_pred             chHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHHhc
Confidence            4899999999999999999965  456999999999998753

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A

Probab=84.25  E-value=2.4  Score=28.25  Aligned_cols=43  Identities=19%  Similarity=0.132  Sum_probs=36.2

Q ss_pred             CCCccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcC
Q psy3274          37 ESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKT   81 (115)
Q Consensus        37 ~~p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s   81 (115)
                      +..+.|+++|.+.-|+...+..+|++.  -+|++|++-++.++..
T Consensus        20 g~l~~~l~klkVaeLK~eLk~RGL~~s--G~KaeLIeRL~~~~~~   62 (75)
T 2kvu_A           20 GALPANLDDMKVAELKQELKLRSLPVS--GTKTELIERLRAYQDQ   62 (75)
T ss_dssp             SSCCTTTTTSCHHHHHHHHHHTTCCCC--SCHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHCcHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHc
Confidence            345569999999999999999999554  4599999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1jeqa1	51	DNA binding C-terminal domain of ku70 {Human (Homo	95.97
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	87.71
d1zrja1	37	Heterogeneous nuclear ribonucleoprotein U-like pro	85.69

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.006  Score=36.55  Aligned_cols=39  Identities=31%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             ccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhc
Q psy3274          40 DVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFK   80 (115)
Q Consensus        40 ~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~   80 (115)
                      +-+|++|.+..|+-+.+.++|++.  -.|++|++-|..||.
T Consensus        12 ~~~L~kltV~~LK~~lk~~gL~~s--GkKa~Li~Ri~~~l~   50 (51)
T d1jeqa1          12 KGTLGKFTVPMLKEACRAYGLKSG--LKKQELLEALTKHFQ   50 (51)
T ss_dssp             HTCGGGCCHHHHHHHHHHTTCCCC--SSHHHHHHHHHHHHT
T ss_pred             cCcHhhCcHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHhh
Confidence            357999999999999999999766  479999999999995

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.71  E-value=0.57  Score=26.75  Aligned_cols=38  Identities=21%  Similarity=0.164  Sum_probs=33.2

Q ss_pred             cCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhc
Q psy3274          41 VDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFK   80 (115)
Q Consensus        41 vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~   80 (115)
                      .|++.|.+..|+...+.-+|++.  -+|++|++-|.+|-.
T Consensus         3 ~dy~~ltv~eLK~~lk~rgL~~s--G~Ka~Li~RL~~~d~   40 (44)
T d1h1js_           3 ADYSSLTVVQLKDLLTKRNLSVG--GLKNELVQRLIKDDE   40 (44)
T ss_dssp             CSGGGCCHHHHHHHHHHTTCCCC--SSHHHHHHHHHHHHH
T ss_pred             CcHHHCcHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHhh
Confidence            58999999999999999999654  469999999999853

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.95  Score=24.94  Aligned_cols=35  Identities=37%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             cCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy3274          41 VDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLK   77 (115)
Q Consensus        41 vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~k   77 (115)
                      ||++++.+.-|+...+..+|++.  -+|++|++-+..
T Consensus         1 ~d~~~m~V~eLK~~Lk~rgL~~s--G~Ka~Li~RL~~   35 (37)
T d1zrja1           1 MDVRRLKVNELREELQRRGLDTR--GLKAELAERLQA   35 (37)
T ss_dssp             CCGGGSCHHHHHHHHHHTTCCCC--SCHHHHHHHHHH
T ss_pred             CChHHCcHHHHHHHHHHCCCCCC--CCHHHHHHHHHH
Confidence            68999999999999999999554  569999987764