Psyllid ID: psy3276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--
Protein Sequence
MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFREL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHcEEEEcccccccc
Coil and Loop (DISEMBL)
mngfsigeedshgptdlqQICClvddgvrcprpignasySKRIQQIVTQKRLKLHLDNFREL
Flexible Loop (DISEMBL)
MNGFSIgeedshgptDLQQICCLVDDGVRCPRPIgnasyskriqqIVTQKRLKLhldnfrel
Low Complexity Region (SEG)
MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFREL
Disordered region (IsUnstruct)
****************LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH*******
Disordered Region (DISOPRED)
*******************ICCLVDDGVRCPR*************IVTQKRLKLHLD*FR**
Disordered Region (DISEMBL)
*************PTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFREL
Disordered Region (DISPRO)
***************DLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFREL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	62	2.2.26 [Sep-21-2011]
Q7PXY4	174	Histone deacetylase compl	yes	N/A	0.887	0.316	0.701	1e-16
Q17Q39	173	Histone deacetylase compl	N/A	N/A	0.870	0.312	0.696	5e-16
A4FVD8	181	Histone deacetylase compl	N/A	N/A	1.0	0.342	0.529	8e-13
Q9VXB3	173	Histone deacetylase compl	yes	N/A	0.870	0.312	0.660	9e-13
Q28H91	181	Histone deacetylase compl	yes	N/A	0.919	0.314	0.532	1e-12
Q2TAD4	181	Histone deacetylase compl	N/A	N/A	0.919	0.314	0.532	1e-12
Q29IK8	173	Histone deacetylase compl	yes	N/A	0.870	0.312	0.625	7e-12
Q6NYV5	178	Histone deacetylase compl	yes	N/A	0.903	0.314	0.557	1e-11
Q9HAJ7	183	Histone deacetylase compl	no	N/A	0.919	0.311	0.492	2e-10
Q5SQF8	182	Histone deacetylase compl	yes	N/A	0.919	0.313	0.5	3e-10

>sp|Q7PXY4|SAP30_ANOGA Histone deacetylase complex subunit SAP30 homolog OS=Anopheles gambiae GN=AGAP001654 PE=3 SV=4

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 2/57 (3%)

Query: 2  NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDN 58
          NGFS GEEDS GP D  QICCL+DDG RC +  GNASYSKRIQ+ VTQ+RLKL +D+
Sbjct: 5  NGFSTGEEDSRGPAD--QICCLLDDGERCRKQAGNASYSKRIQKTVTQRRLKLSIDS 59

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).
Anopheles gambiae (taxid: 7165)

>sp|Q17Q39|SAP30_AEDAE Histone deacetylase complex subunit SAP30 homolog OS=Aedes aegypti GN=AAEL000149 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 44/56 (78%), Gaps = 2/56 (3%)

Query: 2  NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          NGFS GEEDS GP D  Q+CCL+DDG RC    GNASYSKRIQ+ VTQ+RLKL +D
Sbjct: 4  NGFSTGEEDSRGPAD--QVCCLLDDGDRCRNQAGNASYSKRIQKTVTQRRLKLSID 57

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Aedes aegypti (taxid: 7159)

>sp|A4FVD8|S30LA_XENLA Histone deacetylase complex subunit SAP30L-A OS=Xenopus laevis GN=sap30l-a PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 6/68 (8%)

Query: 1  MNGFSIGEEDSHGPTD-----LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH 55
          MNGFS  E+   GP         Q CCL+D G RCPRP GNAS+SKR+Q+ ++QK+LKL 
Sbjct: 1  MNGFSTEEDSRDGPPAQAAPFFGQTCCLIDGGERCPRPAGNASFSKRVQKSISQKKLKLD 60

Query: 56 LD-NFREL 62
          +D N R L
Sbjct: 61 IDKNVRHL 68

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Xenopus laevis (taxid: 8355)

>sp|Q9VXB3|SAP30_DROME Histone deacetylase complex subunit SAP30 homolog OS=Drosophila melanogaster GN=Sap30 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 2  NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          NGFS GEEDS G TD  Q CCL+DD  RC    G ASYSKRIQ+ V QKRLKL  D
Sbjct: 3  NGFSTGEEDSRGHTD--QTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLKLSSD 56

Component of the class 1 Sin3A-histone deacetylase (Rpd3) complex (HDAC). Appears to be a non-essential subunit of this complex which is not required for cell cycle regulation of progression through the G2 phase of the cell cycle.

Drosophila melanogaster (taxid: 7227)

>sp|Q28H91|SP30L_XENTR Histone deacetylase complex subunit SAP30L OS=Xenopus tropicalis GN=sap30l PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 1  MNGFSIGEEDSHGPTD-----LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH 55
          MNGFS  E+   GP         Q CCL+D G RCPRP GNAS+SKR+Q+ ++QK+LKL 
Sbjct: 1  MNGFSTEEDSRDGPPAQAAPFFGQTCCLIDGGERCPRPAGNASFSKRVQKSISQKKLKLD 60

Query: 56 LD 57
          +D
Sbjct: 61 ID 62

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Xenopus tropicalis (taxid: 8364)

>sp|Q2TAD4|S30LB_XENLA Histone deacetylase complex subunit SAP30L-B OS=Xenopus laevis GN=sap30l-b PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 1  MNGFSIGEEDSHGPTD-----LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH 55
          MNGFS  E+   GP         Q CCL+D G RCPRP GNAS+SKR+Q+ ++QK+LKL 
Sbjct: 1  MNGFSTEEDSRDGPPAQAAPFFGQTCCLIDGGERCPRPAGNASFSKRVQKSISQKKLKLD 60

Query: 56 LD 57
          +D
Sbjct: 61 ID 62

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Xenopus laevis (taxid: 8355)

>sp|Q29IK8|SAP30_DROPS Histone deacetylase complex subunit SAP30 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sap30 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 2  NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          NGFS GEEDS G  D  Q CCL+DD  RC    G ASYSKRIQ+ V QKRL+L  D
Sbjct: 3  NGFSTGEEDSRGHAD--QTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLRLSSD 56

Component of the class 1 Sin3A-histone deacetylase (Rpd3) complex (HDAC). Appears to be a non-essential subunit of this complex which is not required for cell cycle regulation of progression through the G2 phase of the cell cycle.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q6NYV5|SP30L_DANRE Histone deacetylase complex subunit SAP30L OS=Danio rerio GN=sap30l PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 5/61 (8%)

Query: 1  MNGFSIGEEDSH----GPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHL 56
          MNGFS  EEDSH     P    Q CCL++D  RC RP GNAS+SKRIQ+ ++Q++LKL +
Sbjct: 1  MNGFST-EEDSHDGPPAPPFFGQSCCLIEDAERCGRPAGNASFSKRIQKSISQRKLKLDI 59

Query: 57 D 57
          D
Sbjct: 60 D 60

Required for the function of the class 1 Sin3-histone deacetylase complex (HDAC).

Danio rerio (taxid: 7955)

>sp|Q9HAJ7|SP30L_HUMAN Histone deacetylase complex subunit SAP30L OS=Homo sapiens GN=SAP30L PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 8/65 (12%)

Query: 1  MNGFSIGEEDSHGPTDLQ--------QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRL 52
          MNGFS  E+   GP            Q CCL++DG RC RP GNAS+SKR+Q+ ++QK+L
Sbjct: 1  MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60

Query: 53 KLHLD 57
          KL +D
Sbjct: 61 KLDID 65

Involved in the functional recruitment of the class 1 Sin3-histone deacetylase complex (HDAC) to the nucleolus.

Homo sapiens (taxid: 9606)

>sp|Q5SQF8|SP30L_MOUSE Histone deacetylase complex subunit SAP30L OS=Mus musculus GN=Sap30l PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 7/64 (10%)

Query: 1  MNGFSIGEEDSHGPTDLQ-------QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLK 53
          MNGFS  E+   GP           Q CCL+ DG RC RP GNAS+SKR+Q+ ++QK+LK
Sbjct: 1  MNGFSTEEDSREGPPAAPAAAPGYGQSCCLIADGERCVRPAGNASFSKRVQKSISQKKLK 60

Query: 54 LHLD 57
          L +D
Sbjct: 61 LDID 64

Involved in the functional recruitment of the class 1 Sin3-histone deacetylase complex (HDAC) to the nucleolus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
242003303	172	histone deacetylase complex subunit SAP3	0.919	0.331	0.728	2e-17
307192729	176	Histone deacetylase complex subunit SAP3	0.919	0.323	0.728	1e-16
307191140	176	Histone deacetylase complex subunit SAP3	0.919	0.323	0.728	2e-16
383858170	175	PREDICTED: histone deacetylase complex s	0.887	0.314	0.754	2e-16
340728543	181	PREDICTED: histone deacetylase complex s	0.887	0.303	0.754	2e-16
66509501	175	PREDICTED: histone deacetylase complex s	0.887	0.314	0.754	2e-16
350402644	175	PREDICTED: histone deacetylase complex s	0.887	0.314	0.754	2e-16
332025496	176	Histone deacetylase complex subunit SAP3	0.919	0.323	0.711	6e-16
322797835	180	hypothetical protein SINV_05351 [Solenop	0.870	0.3	0.75	6e-16
312379895	158	hypothetical protein AND_08130 [Anophele	0.887	0.348	0.701	4e-15

>gi|242003303|ref|XP_002422687.1| histone deacetylase complex subunit SAP30, putative [Pediculus humanus corporis] gi|212505509|gb|EEB09949.1| histone deacetylase complex subunit SAP30, putative [Pediculus humanus corporis]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 2/59 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59
          MNGFS GE+DS G +D  QICCLVDD  RC RP GNASYSKRIQ+ VTQ+RLKLH+DN 
Sbjct: 3  MNGFSTGEDDSRGASD--QICCLVDDNERCKRPAGNASYSKRIQKTVTQRRLKLHIDNL 59

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192729|gb|EFN75837.1| Histone deacetylase complex subunit SAP30-like protein [Harpegnathos saltator]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 2/59 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59
          MNGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD+ 
Sbjct: 1  MNGFSTGEEDSRGAAD--QICCLVDEGERCSRPAGNASYSKRIQKTVTQRRLKLNLDHM 57

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191140|gb|EFN74838.1| Histone deacetylase complex subunit SAP30-like protein [Camponotus floridanus]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 2/59 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59
          MNGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD+ 
Sbjct: 1  MNGFSTGEEDSRGAAD--QICCLVDEGERCSRPAGNASYSKRIQKTVTQRRLKLNLDHM 57

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858170|ref|XP_003704575.1| PREDICTED: histone deacetylase complex subunit SAP30 homolog [Megachile rotundata]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          MNGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD
Sbjct: 1  MNGFSTGEEDSRGAAD--QICCLVDEGERCTRPAGNASYSKRIQKTVTQRRLKLNLD 55

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728543|ref|XP_003402581.1| PREDICTED: histone deacetylase complex subunit SAP30 homolog [Bombus terrestris]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          MNGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD
Sbjct: 7  MNGFSTGEEDSRGAAD--QICCLVDEGERCTRPAGNASYSKRIQKTVTQRRLKLNLD 61

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66509501|ref|XP_624219.1| PREDICTED: histone deacetylase complex subunit SAP30 homolog [Apis mellifera] gi|380025640|ref|XP_003696577.1| PREDICTED: histone deacetylase complex subunit SAP30 homolog [Apis florea]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          MNGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD
Sbjct: 1  MNGFSTGEEDSRGAAD--QICCLVDEGERCTRPAGNASYSKRIQKTVTQRRLKLNLD 55

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402644|ref|XP_003486554.1| PREDICTED: histone deacetylase complex subunit SAP30 homolog [Bombus impatiens]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          MNGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD
Sbjct: 1  MNGFSTGEEDSRGAAD--QICCLVDEGERCTRPAGNASYSKRIQKTVTQRRLKLNLD 55

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025496|gb|EGI65659.1| Histone deacetylase complex subunit SAP30-like protein [Acromyrmex echinatior]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 47/59 (79%), Gaps = 2/59 (3%)

Query: 1  MNGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59
          MNGFS GEEDS G  D  QICCLVD+  RC RP GNASYSKRIQ+ VTQ+RLKL+LD+ 
Sbjct: 1  MNGFSTGEEDSRGAAD--QICCLVDENERCSRPAGNASYSKRIQKTVTQRRLKLNLDHM 57

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797835|gb|EFZ19743.1| hypothetical protein SINV_05351 [Solenopsis invicta]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 46/56 (82%), Gaps = 2/56 (3%)

Query: 2  NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          NGFS GEEDS G  D  QICCLVD+G RC RP GNASYSKRIQ+ VTQ+RLKL+LD
Sbjct: 3  NGFSTGEEDSRGAAD--QICCLVDEGERCSRPAGNASYSKRIQKTVTQRRLKLNLD 56

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379895|gb|EFR26045.1| hypothetical protein AND_08130 [Anopheles darlingi]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 2/57 (3%)

Query: 2  NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDN 58
          NGFS GEEDS GP D  QICCL+DDG RC +  GNASYSKRIQ+ VTQ+RLKL +D+
Sbjct: 4  NGFSTGEEDSRGPAD--QICCLLDDGERCRKQAGNASYSKRIQKTVTQRRLKLSIDS 58

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
FB|FBgn0030788	173	Sap30 "SIN3-associated polypep	0.870	0.312	0.660	2.7e-13
UNIPROTKB|Q29IK8	173	Sap30 "Histone deacetylase com	0.870	0.312	0.625	1.9e-12
ZFIN|ZDB-GENE-030131-5287	178	sap30l "sap30-like" [Danio rer	0.903	0.314	0.573	1.9e-12
UNIPROTKB|Q9HAJ7	183	SAP30L "Histone deacetylase co	0.919	0.311	0.492	1.3e-11
MGI|MGI:1354709	182	Sap30l "SAP30-like" [Mus muscu	0.919	0.313	0.5	2.2e-11
UNIPROTKB|E1C1G4	214	SAP30 "Uncharacterized protein	0.838	0.242	0.490	5.9e-09
UNIPROTKB|E1B806	220	SAP30 "Uncharacterized protein	0.806	0.227	0.509	7e-09
UNIPROTKB|O75446	220	SAP30 "Histone deacetylase com	0.806	0.227	0.509	7e-09
MGI|MGI:1929129	220	Sap30 "sin3 associated polypep	0.806	0.227	0.509	7e-09
UNIPROTKB|E2QY22	220	SAP30 "Uncharacterized protein	0.806	0.227	0.490	2.1e-08

FB|FBgn0030788 Sap30 "SIN3-associated polypeptide 30" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 37/56 (66%), Positives = 39/56 (69%)

Query:     2 NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             NGFS GEEDS G TD  Q CCL+DD  RC    G ASYSKRIQ+ V QKRLKL  D
Sbjct:     3 NGFSTGEEDSRGHTD--QTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLKLSSD 56

GO:0003714 "transcription corepressor activity" evidence=ISS

UNIPROTKB|Q29IK8 Sap30 "Histone deacetylase complex subunit SAP30 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/56 (62%), Positives = 38/56 (67%)

Query:     2 NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             NGFS GEEDS G  D  Q CCL+DD  RC    G ASYSKRIQ+ V QKRL+L  D
Sbjct:     3 NGFSTGEEDSRGHAD--QTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLRLSSD 56

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=ISS

ZFIN|ZDB-GENE-030131-5287 sap30l "sap30-like" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/61 (57%), Positives = 44/61 (72%)

Query:     1 MNGFSIGEEDSH-GPTD---LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHL 56
             MNGFS  EEDSH GP       Q CCL++D  RC RP GNAS+SKRIQ+ ++Q++LKL +
Sbjct:     1 MNGFST-EEDSHDGPPAPPFFGQSCCLIEDAERCGRPAGNASFSKRIQKSISQRKLKLDI 59

Query:    57 D 57
             D
Sbjct:    60 D 60

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9HAJ7 SAP30L "Histone deacetylase complex subunit SAP30L" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query:     1 MNGFSIGEEDSHGPTDLQ--------QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRL 52
             MNGFS  E+   GP            Q CCL++DG RC RP GNAS+SKR+Q+ ++QK+L
Sbjct:     1 MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60

Query:    53 KLHLD 57
             KL +D
Sbjct:    61 KLDID 65

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1354709 Sap30l "SAP30-like" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query:     1 MNGFSIGEEDSHGPTDLQ-------QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLK 53
             MNGFS  E+   GP           Q CCL+ DG RC RP GNAS+SKR+Q+ ++QK+LK
Sbjct:     1 MNGFSTEEDSREGPPAAPAAAPGYGQSCCLIADGERCVRPAGNASFSKRVQKSISQKKLK 60

Query:    54 LHLD 57
             L +D
Sbjct:    61 LDID 64

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C1G4 SAP30 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query:     5 SIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             S G   + GP    Q+CCL ++G RC R  GNAS+SKRIQ+ ++QK++K+ LD
Sbjct:    47 SAGAAGAGGP-GAGQLCCLREEGERCGRAAGNASFSKRIQKSISQKKVKIELD 98

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

UNIPROTKB|E1B806 SAP30 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query:     7 GEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             G   + GP    Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ LD
Sbjct:    54 GPPGAAGPGP-GQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELD 103

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|O75446 SAP30 "Histone deacetylase complex subunit SAP30" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query:     7 GEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             G   + GP    Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ LD
Sbjct:    54 GPPGAAGPGP-GQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELD 103

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

MGI|MGI:1929129 Sap30 "sin3 associated polypeptide" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query:     7 GEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             G   + GP    Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ LD
Sbjct:    54 GPPGAAGPGP-GQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELD 103

GO:0000118 "histone deacetylase complex" evidence=ISO

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0016580 "Sin3 complex" evidence=ISA

GO:0035914 "skeletal muscle cell differentiation" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2QY22 SAP30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 129 (50.5 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query:     7 GEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
             G   + GP    Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ L+
Sbjct:    54 GPPGAAGPGP-GQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELE 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       62        62   0.00091  102 3  11 22  0.39    28
                                                     29  0.41    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  89 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.38u 0.10s 7.48t   Elapsed:  00:00:04
  Total cpu time:  7.38u 0.10s 7.48t   Elapsed:  00:00:04
  Start:  Thu Aug 15 11:14:54 2013   End:  Thu Aug 15 11:14:58 2013

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28H91	SP30L_XENTR	No assigned EC number	0.5322	0.9193	0.3149	yes	N/A
Q29IK8	SAP30_DROPS	No assigned EC number	0.625	0.8709	0.3121	yes	N/A
Q7PXY4	SAP30_ANOGA	No assigned EC number	0.7017	0.8870	0.3160	yes	N/A
Q9VXB3	SAP30_DROME	No assigned EC number	0.6607	0.8709	0.3121	yes	N/A
Q6NYV5	SP30L_DANRE	No assigned EC number	0.5573	0.9032	0.3146	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	62
pfam13866	68	pfam13866, zf-SAP30, SAP30 zinc-finger	4e-13

>gnl|CDD|206037 pfam13866, zf-SAP30, SAP30 zinc-finger

 Score = 56.9 bits (137), Expect = 4e-13
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 19 QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          Q CCL + G RC RP GNAS+SKRIQ+ ++QK+LK+ LD
Sbjct: 2  QCCCLREGGERCGRPAGNASFSKRIQKSISQKKLKIDLD 40

SAP30 is a subunit of the histone deacetylase complex, and this domain is a zinc-finger. Solution of the structure shows a novel fold comprising two beta-strands and two alpha-helices with the zinc organising centre showing remote resemblance to the treble clef motif. In silico analysis of the structure revealed a highly conserved surface dominated by basic residues. NMR-based analysis of potential ligands for the SAP30 zn-finger motif indicated a strong preference for nucleic acid substrates. The zinc-finger of SAP3 probably functions as a double-stranded DNA-binding motif, thereby expanding the known functions of both SAP30 and the mammalian Sin3 co-repressor complex. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	62
PF13866	78	zf-SAP30: SAP30 zinc-finger; PDB: 2KDP_A 2LD7_A.	99.95

>PF13866 zf-SAP30: SAP30 zinc-finger; PDB: 2KDP_A 2LD7_A

Probab=99.95  E-value=1.7e-29  Score=160.25  Aligned_cols=45  Identities=64%  Similarity=1.079  Sum_probs=27.6

Q ss_pred             CCceeeeeeCCCccCCCCCCchhHHHHHHHHhhhhhccccccCCC
Q psy3276          17 LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFRE   61 (62)
Q Consensus        17 ~gq~CCLiddgeRC~r~AGnASySKRIQKtV~QkklKL~~D~~~~   61 (62)
                      .+|+|||+||||||.||||||||||||||||+||+|||++|++|-
T Consensus         8 ~~q~CcL~edGerC~rpAgnas~SKRiqktv~Qk~lKL~~d~sa~   52 (78)
T PF13866_consen    8 ADQICCLVEDGERCGRPAGNASYSKRIQKTVAQKKLKLNIDKSAR   52 (78)
T ss_dssp             -SSB--EEETTB---SB--S----HHHHHHHHHH--SEEE-TT-S
T ss_pred             CCceEEEecCCccccCcccChhHHHHHHHHHHHhccceeeccccc
Confidence            459999999999999999999999999999999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	62
2kdp_A	71	Solution Structure Of The Sap30 Zinc Finger Motif L		6e-09

>pdb|2KDP|A Chain A, Solution Structure Of The Sap30 Zinc Finger Motif Length = 71

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 15 TDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
          ++  Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ LD
Sbjct: 1  SNAGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELD 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	62
2kdp_A	71	Histone deacetylase complex subunit SAP30; SIN3, z	1e-14

>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens} Length = 71

 Score = 60.5 bits (146), Expect = 1e-14
 Identities = 23/40 (57%), Positives = 32/40 (80%)

Query: 19 QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDN 58
          Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ LD 
Sbjct: 5  QLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDK 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	62
2kdp_A	71	Histone deacetylase complex subunit SAP30; SIN3, z	99.97

>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}

Probab=99.97  E-value=7.2e-32  Score=168.57  Aligned_cols=44  Identities=52%  Similarity=0.946  Sum_probs=42.3

Q ss_pred             CceeeeeeCCCccCCCCCCchhHHHHHHHHhhhhhccccccCCC
Q psy3276          18 QQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFRE   61 (62)
Q Consensus        18 gq~CCLiddgeRC~r~AGnASySKRIQKtV~QkklKL~~D~~~~   61 (62)
                      +|+|||+||||||.||||||||||||||||+||+|||++|++|.
T Consensus         4 ~q~CcL~ddgerC~r~AgnasySKRIqKtvaq~~LKL~~d~~a~   47 (71)
T 2kdp_A            4 GQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSAR   47 (71)
T ss_dssp             SSBCCEEETTBCCCSBCCSCCCCHHHHHHHHHHCCSEEECTTCS
T ss_pred             CcEEEEecCCcCCcCcccchhHHHHHHHHHHHHhheeeccCCCc
Confidence            39999999999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00