Psyllid ID: psy3292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFLKI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccccEEEEEcHHHHHHHHcc
Coil and Loop (DISEMBL)
MLSGTTRQILAGMSATLSAFsvgqtfgwsspvlaylvspdspvpmsedesSWVVASMefgcwaipfFAGMLCDRIGRKWTLLSTATLSAFsvgqtfgwsspvlaylvspdspvpmsedesSWVVASMefgcwaipfFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLStgmlcdrkkhksSLVRLEGSALAWFLKI
Flexible Loop (DISEMBL)
MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLStgmlcdrkkhksslvrlegsalawflki
Low Complexity Region (SEG)
MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFLKI
Disordered region (IsUnstruct)
********ILAGMSATLSAFSVGQTFGWSSPVLAYLVS************SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVS************SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFL**
Disordered Region (DISOPRED)
**SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFLKI
Disordered Region (DISEMBL)
MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPD***********WVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPD***********WVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFLKI
Disordered Region (DISPRO)
**SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFLKI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGSALAWFLKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
170037666	457	sugar transporter [Culex quinquefasciatu	0.366	0.170	0.464	5e-12
157167972	455	sugar transporter [Aedes aegypti] gi|108	0.370	0.173	0.493	8e-12
157129228	456	sugar transporter [Aedes aegypti] gi|108	0.384	0.179	0.458	9e-12
125775461	491	GA11424 [Drosophila pseudoobscura pseudo	0.478	0.207	0.401	6e-11
195144546	479	GL24035 [Drosophila persimilis] gi|19410	0.478	0.212	0.401	6e-11
195502135	491	GE10174 [Drosophila yakuba] gi|194184191	0.408	0.177	0.434	9e-11
194745442	491	GF16362 [Drosophila ananassae] gi|190628	0.408	0.177	0.434	1e-10
195036446	486	GH18928 [Drosophila grimshawi] gi|193893	0.389	0.170	0.454	1e-10
24644446	491	CG1213, isoform A [Drosophila melanogast	0.408	0.177	0.423	1e-10
195568591	491	GD19830 [Drosophila simulans] gi|1941982	0.408	0.177	0.423	2e-10

>gi|170037666|ref|XP_001846677.1| sugar transporter [Culex quinquefasciatus] gi|167880961|gb|EDS44344.1| sugar transporter [Culex quinquefasciatus]

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 53/84 (63%)

Query: 1  MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFG 60
          +L     + +A ++ATL  F V  T  W+SP L  L++ DSPVP++EDE SW+VA +  G
Sbjct: 6  LLQTHRNEFVASLAATLCLFMVITTNAWTSPALPKLLADDSPVPITEDEGSWIVAILAIG 65

Query: 61 CWAIPFFAGMLCDRIGRKWTLLST 84
              P  AG+  DRIGRK TLL+T
Sbjct: 66 GLCGPIVAGVTVDRIGRKLTLLAT 89

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167972|ref|XP_001663028.1| sugar transporter [Aedes aegypti] gi|108870672|gb|EAT34897.1| AAEL012903-PA [Aedes aegypti]

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 48/79 (60%)

Query: 7  RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPF 66
           + LA ++ATLS      T  WSSP +  L + DSP+P++EDE SWVVA    G    P 
Sbjct: 12 NEYLATLAATLSIMMTVMTNAWSSPAIVKLEAEDSPIPITEDEGSWVVAIQAIGGIFGPI 71

Query: 67 FAGMLCDRIGRKWTLLSTA 85
            G+  DRIGRKWTLLS A
Sbjct: 72 ITGVAVDRIGRKWTLLSAA 90

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129228|ref|XP_001661649.1| sugar transporter [Aedes aegypti] gi|108872281|gb|EAT36506.1| AAEL011411-PA [Aedes aegypti]

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 52/85 (61%)

Query: 1  MLSGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFG 60
          +      ++LA ++AT S F V     WSSP L  L+S DSP+P++ D+ SW+VA    G
Sbjct: 6  LFKNYRNELLATLTATQSIFMVIMCSSWSSPALPKLLSADSPIPITADQGSWIVACQPVG 65

Query: 61 CWAIPFFAGMLCDRIGRKWTLLSTA 85
              P F+ +  DRIGRKWTLLSTA
Sbjct: 66 AIFGPVFSSLAMDRIGRKWTLLSTA 90

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125775461|ref|XP_001358949.1| GA11424 [Drosophila pseudoobscura pseudoobscura] gi|54638690|gb|EAL28092.1| GA11424 [Drosophila pseudoobscura pseudoobscura]

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 5   TTRQILAGMSATLSAFSVGQTFGWSSPV---LAYLVSPDSPV--PMSEDESSWVVASMEF 59
           T R  +A ++A LSAF VG   GW+SP+   L    + DSP+  P++ DE +W+ + +  
Sbjct: 39  TGRIFMAAVAANLSAFVVGTCLGWTSPIGPKLKTEDTSDSPLDRPITSDEDAWISSLIAI 98

Query: 60  GCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYL 106
           G    PF AG L DRIGRKW LLS++     + G   G S   + YL
Sbjct: 99  GALIAPFVAGPLADRIGRKWVLLSSSLFFVLAFGINMGASEVWILYL 145

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144546|ref|XP_002013257.1| GL24035 [Drosophila persimilis] gi|194102200|gb|EDW24243.1| GL24035 [Drosophila persimilis]

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 5   TTRQILAGMSATLSAFSVGQTFGWSSPV---LAYLVSPDSPV--PMSEDESSWVVASMEF 59
           T R  +A ++A LSAF VG   GW+SP+   L    + DSP+  P++ DE +W+ + +  
Sbjct: 39  TGRIFMAAVAANLSAFVVGTCLGWTSPIGPKLKTEDTSDSPLDRPITSDEDAWISSLIAI 98

Query: 60  GCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYL 106
           G    PF AG L DRIGRKW LLS++     + G   G S   + YL
Sbjct: 99  GALIAPFVAGPLADRIGRKWVLLSSSLFFVLAFGINMGASEVWILYL 145

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195502135|ref|XP_002098090.1| GE10174 [Drosophila yakuba] gi|194184191|gb|EDW97802.1| GE10174 [Drosophila yakuba]

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 7   RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPD---SPV--PMSEDESSWVVASMEFGC 61
           R  +A ++A LSAF VG T GW+SP+   L S D   SP+  P++ DE +W+ + +  G 
Sbjct: 41  RIFMAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGA 100

Query: 62  WAIPFFAGMLCDRIGRKWTLLSTATLSAFSVG 93
              PF AG L DRIGRKW LLS++     + G
Sbjct: 101 LVAPFVAGPLADRIGRKWVLLSSSLFFVLAFG 132

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745442|ref|XP_001955197.1| GF16362 [Drosophila ananassae] gi|190628234|gb|EDV43758.1| GF16362 [Drosophila ananassae]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 7   RQILAGMSATLSAFSVGQTFGWSSPV---LAYLVSPDSPV--PMSEDESSWVVASMEFGC 61
           R  LA ++A LSAF VG T GW+SP+   L    + DSP+  P++ DE +W+ + +  G 
Sbjct: 41  RIFLAAVAANLSAFVVGTTLGWTSPIGPKLKAEDTSDSPLSRPITSDEDAWISSLIAIGA 100

Query: 62  WAIPFFAGMLCDRIGRKWTLLSTATLSAFSVG 93
              PF AG L DRIGRKW LLS++     + G
Sbjct: 101 LVAPFAAGPLADRIGRKWVLLSSSLFFVLAFG 132

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195036446|ref|XP_001989681.1| GH18928 [Drosophila grimshawi] gi|193893877|gb|EDV92743.1| GH18928 [Drosophila grimshawi]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 5   TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPD---SPV--PMSEDESSWVVASMEF 59
           T R  LA ++A LSAF VG   GW+SP+   L S D   SP+  P++ DE +W+ + +  
Sbjct: 34  TGRIFLAAVAANLSAFVVGTCLGWTSPIGPKLKSADTSDSPLDRPITADEDAWISSLIAI 93

Query: 60  GCWAIPFFAGMLCDRIGRKWTLLSTATL 87
           G    PF AG L DRIGRKW LLS++  
Sbjct: 94  GALVAPFVAGPLADRIGRKWVLLSSSVF 121

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24644446|ref|NP_649599.1| CG1213, isoform A [Drosophila melanogaster] gi|24644448|ref|NP_731020.1| CG1213, isoform B [Drosophila melanogaster] gi|24644450|ref|NP_731021.1| CG1213, isoform C [Drosophila melanogaster] gi|386765192|ref|NP_001246937.1| CG1213, isoform D [Drosophila melanogaster] gi|7296661|gb|AAF51941.1| CG1213, isoform A [Drosophila melanogaster] gi|7296662|gb|AAF51942.1| CG1213, isoform B [Drosophila melanogaster] gi|21429956|gb|AAM50656.1| GH17672p [Drosophila melanogaster] gi|23175941|gb|AAN14329.1| CG1213, isoform C [Drosophila melanogaster] gi|220960232|gb|ACL92652.1| CG1213-PA [synthetic construct] gi|383292517|gb|AFH06256.1| CG1213, isoform D [Drosophila melanogaster]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 7   RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPD---SPV--PMSEDESSWVVASMEFGC 61
           R  +A ++A LSAF VG T GW+SP+   L S D   SP+  P++ DE +W+ + +  G 
Sbjct: 41  RIFMAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGA 100

Query: 62  WAIPFFAGMLCDRIGRKWTLLSTATLSAFSVG 93
              PF AG + DRIGRKW LLS++     + G
Sbjct: 101 LVAPFVAGPMADRIGRKWVLLSSSLFFVLAFG 132

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195568591|ref|XP_002102297.1| GD19830 [Drosophila simulans] gi|194198224|gb|EDX11800.1| GD19830 [Drosophila simulans]

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 7   RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPD---SPV--PMSEDESSWVVASMEFGC 61
           R  +A ++A LSAF VG T GW+SP+   L S D   SP+  P++ DE +W+ + +  G 
Sbjct: 41  RIFMAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGA 100

Query: 62  WAIPFFAGMLCDRIGRKWTLLSTATLSAFSVG 93
              PF AG + DRIGRKW LLS++     + G
Sbjct: 101 LVAPFVAGPMADRIGRKWVLLSSSLFFVLAFG 132

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
FB|FBgn0037387	491	CG1213 [Drosophila melanogaste	0.469	0.203	0.390	8.9e-16
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.342	0.135	0.379	3.8e-07
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.394	0.180	0.344	2.1e-05
FB|FBgn0037486	452	CG14605 [Drosophila melanogast	0.281	0.132	0.415	2.3e-05
FB|FBgn0031522	466	CG3285 [Drosophila melanogaste	0.366	0.167	0.35	4.3e-05
FB|FBgn0031517	469	CG15406 [Drosophila melanogast	0.370	0.168	0.378	8.5e-05
CGD|CAL0002195	526	HGT12 [Candida albicans (taxid	0.422	0.171	0.354	0.0001
UNIPROTKB|G1UB10	526	HGT12 "Potential sugar sensor	0.422	0.171	0.354	0.0001
UNIPROTKB|Q5VVV9	411	SLC2A8 "Solute carrier family	0.403	0.209	0.359	0.00017
UNIPROTKB|F1MZY9	478	SLC2A8 "Solute carrier family	0.403	0.179	0.359	0.00023

FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
 Identities = 41/105 (39%), Positives = 59/105 (56%)

Query:     7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPD---SPV--PMSEDESSWVVASMEFGC 61
             R  +A ++A LSAF VG T GW+SP+   L S D   SP+  P++ DE +W+ + +  G 
Sbjct:    41 RIFMAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGA 100

Query:    62 WAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYL 106
                PF AG + DRIGRKW LLS++     + G     S   + Y+
Sbjct:   101 LVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYM 145

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query:     8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDS--PVPMSEDESSWVVASMEFG--CWA 63
             Q +A ++A   AF+ G   GW+SP    +V        P+ +D+ SWV ++M  G  C  
Sbjct:    83 QYVAALAAAGGAFAAGTVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVC 142

Query:    64 IPFFAGMLCDRIGRKWTLL 82
             IP   G L + IGRKWT+L
Sbjct:   143 IPI--GFLINMIGRKWTML 159

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:     8 QILAGMSATLSAFSVGQTFGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPF 66
             Q +AG+SA+  A  +G + GWSSPV   + V+ +   P+S  +  WV + +  G   I  
Sbjct:     9 QYIAGLSASFGALCMGASIGWSSPVENMITVNTEYGFPISSSQFGWVSSLLTLGATVICI 68

Query:    67 FAGMLCDRIGRKWTLLSTATLSAFSVG 93
               G   D IGR+ T+L  A +  + VG
Sbjct:    69 PIGFAIDWIGRRPTML--ALIPPYMVG 93

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037486 CG14605 [Drosophila melanogaster (taxid:7227)]

 Score = 115 (45.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 27/65 (41%), Positives = 35/65 (53%)

Query:    71 LCDRIGRKWTLLSTATLSAFSV--GQTFGWSSPVLAYLVSPDSPV--PMSEDESSWVVAS 126
             +C R  R W LLST  L   S+  G + GW SP L  L+S +SP+  P+   E  W+ AS
Sbjct:     3 ICSRRNR-WQLLSTMILCIMSLTHGISLGWFSPTLPTLISDNSPIGHPIDISEVKWIGAS 61

Query:   127 MEFGC 131
                GC
Sbjct:    62 FGIGC 66

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

FB|FBgn0031522 CG3285 [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query:     8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPV--PMSEDESSWVVASMEFGCWAIP 65
             Q L  +   ++ FS G   GW SPV+  L + +SP+  P+   + SW+ + +  G     
Sbjct:    25 QFLVTLLLNIATFSHGLGVGWMSPVMRDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGN 84

Query:    66 FFAGMLCDRIGRKWTLLSTA 85
               AG+L DRIGRK  L   A
Sbjct:    85 LIAGLLMDRIGRKMVLFFIA 104

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0031517 CG15406 [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query:     7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSP-DSPVPMSED--ESSWVVASMEFGCWA 63
             RQ+L  +SATL  F  G   GW SP+L  L+SP ++P+    D  E+SW+ A +  G  +
Sbjct:    17 RQLLVSLSATLITFCHGIALGWLSPMLPKLLSPQETPLSFYIDVNEASWLGAVISIGGIS 76

Query:    64 IPFFAGMLCDRIGRKWTLLSTA 85
               F    L +R GRK ++ + A
Sbjct:    77 GNFSFSYLMNRFGRKVSIYALA 98

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0002195 HGT12 [Candida albicans (taxid:5476)]

 Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 34/96 (35%), Positives = 51/96 (53%)

Query:     3 SGTT-RQILAGMSATLSAFSVGQTFGWSSPVLA--YLVS--PDSPVPMSEDESSWVVASM 57
             SG+  R IL GM A    F  G   G  S VL+  Y+ +  P++    +  ESS +V+ +
Sbjct:    20 SGSAARGILIGMFAAFGGFLFGYDTGTISGVLSMDYVKARFPNNKTDFTSGESSLIVSIL 79

Query:    58 EFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVG 93
               G +     A +  DRIGR+WTL+  +TL  F++G
Sbjct:    80 SVGTFVGSLIAPLFSDRIGRRWTLI-LSTLIVFNLG 114

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=IDA

GO:0015578 "mannose transmembrane transporter activity" evidence=IDA

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS;IDA

GO:0008645 "hexose transport" evidence=ISS;IDA

GO:0051594 "detection of glucose" evidence=ISS

GO:0015758 "glucose transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015149 "hexose transmembrane transporter activity" evidence=ISS

GO:0008646 "high-affinity hexose transport" evidence=IEP

GO:0030447 "filamentous growth" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036244 "cellular response to neutral pH" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036178 "filamentous growth of a population of unicellular organisms in response to neutral pH" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

UNIPROTKB|G1UB10 HGT12 "Potential sugar sensor or transporter" [Candida albicans SC5314 (taxid:237561)]

 Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 34/96 (35%), Positives = 51/96 (53%)

Query:     3 SGTT-RQILAGMSATLSAFSVGQTFGWSSPVLA--YLVS--PDSPVPMSEDESSWVVASM 57
             SG+  R IL GM A    F  G   G  S VL+  Y+ +  P++    +  ESS +V+ +
Sbjct:    20 SGSAARGILIGMFAAFGGFLFGYDTGTISGVLSMDYVKARFPNNKTDFTSGESSLIVSIL 79

Query:    58 EFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVG 93
               G +     A +  DRIGR+WTL+  +TL  F++G
Sbjct:    80 SVGTFVGSLIAPLFSDRIGRRWTLI-LSTLIVFNLG 114

GO:0005353 "fructose transmembrane transporter activity" evidence=IDA

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008645 "hexose transport" evidence=ISS;IDA

GO:0008646 "high-affinity hexose transport" evidence=IEP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0015149 "hexose transmembrane transporter activity" evidence=ISS

GO:0015578 "mannose transmembrane transporter activity" evidence=IDA

GO:0015755 "fructose transport" evidence=IDA

GO:0015758 "glucose transport" evidence=ISS

GO:0015761 "mannose transport" evidence=IDA

GO:0030447 "filamentous growth" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036178 "filamentous growth of a population of unicellular organisms in response to neutral pH" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0036244 "cellular response to neutral pH" evidence=IMP

GO:0051594 "detection of glucose" evidence=ISS

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q5VVV9 SLC2A8 "Solute carrier family 2, (Facilitated glucose transporter) member 8, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 32/89 (35%), Positives = 42/89 (47%)

Query:     7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDES-SWVVASMEFGCWAIP 65
             R  LA  +A L   S G   G+SSP +  L     P P  +D + SW  A +  G  A  
Sbjct:    25 RVFLAAFAAALGPLSFGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGG 84

Query:    66 FFAGMLCDRIGRKWTLL--STATLSAFSV 92
                G L DR GRK +LL  S   ++ F+V
Sbjct:    85 VLGGWLVDRAGRKLSLLLCSVPFVAGFAV 113

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1MZY9 SLC2A8 "Solute carrier family 2, facilitated glucose transporter member 8" [Bos taurus (taxid:9913)]

 Score = 114 (45.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 32/89 (35%), Positives = 43/89 (48%)

Query:     7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVP-MSEDESSWVVASMEFGCWAIP 65
             R  LA  +A L   S G   G+SSP +  L     P P + ED +SW  A +  G  A  
Sbjct:    25 RVFLAAFAAALGPLSFGFALGYSSPAIPSLRRAAPPAPHLDEDAASWFGAIVTLGAAAGG 84

Query:    66 FFAGMLCDRIGRKWTLLSTAT--LSAFSV 92
                G L DR GRK +L+  A   ++ F+V
Sbjct:    85 VLGGWLLDRAGRKLSLVLCALPFVAGFAV 113

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.83
KOG0569|consensus	485		99.79
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.78
KOG0254|consensus	513		99.76
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.75
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.72
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.72
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.69
TIGR00891	405	2A0112 putative sialic acid transporter.	99.69
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.65
PRK03545	390	putative arabinose transporter; Provisional	99.63
KOG0255|consensus	521		99.62
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.62
TIGR00898	505	2A0119 cation transport protein.	99.61
TIGR00895	398	2A0115 benzoate transport.	99.59
PRK10642	490	proline/glycine betaine transporter; Provisional	99.59
PRK12307	426	putative sialic acid transporter; Provisional	99.58
KOG0253|consensus	528		99.57
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.57
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.56
PRK11663	434	regulatory protein UhpC; Provisional	99.55
PRK03893	496	putative sialic acid transporter; Provisional	99.55
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.55
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.54
PRK10091	382	MFS transport protein AraJ; Provisional	99.53
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.52
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.52
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.51
PRK10504	471	putative transporter; Provisional	99.5
PRK03699	394	putative transporter; Provisional	99.5
PRK09952	438	shikimate transporter; Provisional	99.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.47
TIGR00900	365	2A0121 H+ Antiporter protein.	99.47
PRK09705	393	cynX putative cyanate transporter; Provisional	99.46
PRK11043	401	putative transporter; Provisional	99.45
PRK10642	490	proline/glycine betaine transporter; Provisional	99.44
TIGR00893	399	2A0114 d-galactonate transporter.	99.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.4
PRK15075	434	citrate-proton symporter; Provisional	99.39
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.37
PRK10054	395	putative transporter; Provisional	99.36
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.35
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.35
PRK10133	438	L-fucose transporter; Provisional	99.34
PLN00028	476	nitrate transmembrane transporter; Provisional	99.34
PRK03633	381	putative MFS family transporter protein; Provision	99.33
PRK09874	408	drug efflux system protein MdtG; Provisional	99.32
KOG1330|consensus	493		99.32
PRK05122	399	major facilitator superfamily transporter; Provisi	99.31
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.31
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.3
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.3
PRK12382	392	putative transporter; Provisional	99.3
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.29
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.27
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
KOG0252|consensus	538		99.23
KOG2615|consensus	451		99.23
PTZ00207	591	hypothetical protein; Provisional	99.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.19
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.15
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.15
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.13
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.12
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.09
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.09
PRK15011	393	sugar efflux transporter B; Provisional	99.08
PRK09528	420	lacY galactoside permease; Reviewed	99.08
PRK10489	417	enterobactin exporter EntS; Provisional	99.07
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.05
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.05
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.04
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.03
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.0
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.0
TIGR00805	633	oat sodium-independent organic anion transporter.	98.98
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.98
PRK11902	402	ampG muropeptide transporter; Reviewed	98.97
KOG2532|consensus	466		98.97
PRK03699	394	putative transporter; Provisional	98.97
PRK15011	393	sugar efflux transporter B; Provisional	98.94
TIGR00891	405	2A0112 putative sialic acid transporter.	98.93
TIGR00901	356	2A0125 AmpG-related permease.	98.93
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.93
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.92
PRK11010	491	ampG muropeptide transporter; Validated	98.91
PRK09528	420	lacY galactoside permease; Reviewed	98.91
KOG3764|consensus	464		98.9
PRK03893	496	putative sialic acid transporter; Provisional	98.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.88
PRK03545	390	putative arabinose transporter; Provisional	98.85
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.84
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.82
PRK03633	381	putative MFS family transporter protein; Provision	98.82
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.81
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.8
PRK10489	417	enterobactin exporter EntS; Provisional	98.8
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.79
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.79
PRK09705	393	cynX putative cyanate transporter; Provisional	98.79
KOG2533|consensus	495		98.79
PRK12382	392	putative transporter; Provisional	98.78
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.77
PRK11010	491	ampG muropeptide transporter; Validated	98.76
PRK09874	408	drug efflux system protein MdtG; Provisional	98.71
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.71
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.71
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.69
PRK05122	399	major facilitator superfamily transporter; Provisi	98.69
PRK11902	402	ampG muropeptide transporter; Reviewed	98.66
KOG2504|consensus	509		98.66
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.66
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.64
TIGR00893	399	2A0114 d-galactonate transporter.	98.64
TIGR00900	365	2A0121 H+ Antiporter protein.	98.64
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.61
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.61
PRK10091	382	MFS transport protein AraJ; Provisional	98.61
PRK12307	426	putative sialic acid transporter; Provisional	98.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.6
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.6
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.59
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.58
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.57
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.55
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.54
PRK11663	434	regulatory protein UhpC; Provisional	98.53
PRK10054	395	putative transporter; Provisional	98.51
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.51
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.49
PRK15075	434	citrate-proton symporter; Provisional	98.48
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.47
PLN00028	476	nitrate transmembrane transporter; Provisional	98.45
TIGR00895	398	2A0115 benzoate transport.	98.45
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.43
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.43
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.43
KOG0569|consensus	485		98.41
PRK10504	471	putative transporter; Provisional	98.41
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.4
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.4
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.38
PRK09952	438	shikimate transporter; Provisional	98.37
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.37
PRK10133	438	L-fucose transporter; Provisional	98.37
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.36
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.34
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.34
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.34
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.32
PF12832	77	MFS_1_like: MFS_1 like family	98.24
TIGR00898	505	2A0119 cation transport protein.	98.22
KOG2504|consensus	509		98.22
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.2
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.19
KOG4686|consensus	459		98.15
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.14
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.13
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.12
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.09
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.08
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.07
PRK09848	448	glucuronide transporter; Provisional	98.06
COG2211	467	MelB Na+/melibiose symporter and related transport	98.06
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.01
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.97
PRK10429	473	melibiose:sodium symporter; Provisional	97.95
KOG2325|consensus	488		97.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.85
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.83
PRK09669	444	putative symporter YagG; Provisional	97.81
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.8
PF13347	428	MFS_2: MFS/sugar transport protein	97.79
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.77
TIGR00901	356	2A0125 AmpG-related permease.	97.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.75
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.75
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.63
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.6
PRK11462	460	putative transporter; Provisional	97.59
KOG2816|consensus	463		97.57
KOG0253|consensus	528		97.56
KOG3762|consensus	618		97.54
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.52
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.52
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.47
KOG3764|consensus	464		97.43
PRK11043	401	putative transporter; Provisional	97.4
PRK09669	444	putative symporter YagG; Provisional	97.28
COG0477	338	ProP Permeases of the major facilitator superfamil	97.27
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.22
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.2
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.2
PRK10429	473	melibiose:sodium symporter; Provisional	97.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.03
PF13347	428	MFS_2: MFS/sugar transport protein	97.02
KOG0254|consensus	513		96.96
KOG2563|consensus	480		96.94
KOG3762|consensus	618		96.82
KOG2532|consensus	466		96.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.78
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.65
KOG0252|consensus	538		96.64
KOG2533|consensus	495		96.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.6
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.03
PRK11462	460	putative transporter; Provisional	95.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.88
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.73
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.57
PRK09848	448	glucuronide transporter; Provisional	95.53
KOG4686|consensus	459		95.43
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.8
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.54
KOG0255|consensus	521		94.1
TIGR00805	633	oat sodium-independent organic anion transporter.	94.0
KOG0637|consensus	498		93.87
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.64
KOG2563|consensus	480		93.63
COG2211	467	MelB Na+/melibiose symporter and related transport	93.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.48
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.22
KOG3626|consensus	735		92.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.84
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	92.53
KOG2816|consensus	463		92.37
PRK03612	521	spermidine synthase; Provisional	91.86
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	91.76
KOG1330|consensus	493		91.5
KOG2615|consensus	451		91.08
KOG1237|consensus	571		90.2
PRK15462	493	dipeptide/tripeptide permease D; Provisional	89.4
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	89.34
PTZ00207	591	hypothetical protein; Provisional	88.82
PF12832	77	MFS_1_like: MFS_1 like family	86.39
KOG4332|consensus	454		86.19
KOG3574|consensus	510		85.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	84.27
KOG3098|consensus	461		80.13

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.83  E-value=4e-20  Score=161.51  Aligned_cols=186  Identities=14%  Similarity=0.102  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      .+.+|.+.+++.++.+..|+|....+.++|.+.+   +++.++.+.+++.+++.+|.++|++++|+++||+|||++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~  238 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC  238 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            4667888888899999999999999999999988   8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      .++..++. +.+++++++.+.+                  ...+..|...+....+.+.....+|..+++.++..+...+
T Consensus       239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999 8889888877655                  1222333333333445566667788888887777666544


Q ss_pred             -------------ccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhccc
Q psy3292         146 -------------GRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEG  204 (213)
Q Consensus       146 -------------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~  204 (213)
                                   +||+.+++.+++++       +..+..+++||||+|+ +.+|   +.++|.+.++++++
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~l-------l~ll~~~~lPESPrwL-~~~g---r~~eA~~iL~~i~~  379 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCV-------FAIGALTFMPESPRFF-LENG---KHDEAWMILKLIHD  379 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHH-------HHHHHHHHcCCCHHHH-HHCC---CHHHHHHHHHHHhc
Confidence                         46777666655522       2223345569999999 9999   89999999988754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569|consensus

Probab=99.79  E-value=6.4e-19  Score=146.19  Aligned_cols=193  Identities=22%  Similarity=0.205  Sum_probs=136.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-------CCCCCCCChh----hHHHHHHHHHHHHhhhhhhhHHh
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-------PDSPVPMSED----ESSWVVASMEFGCWAIPFFAGML   71 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~s~~----~~~~~~s~~~~g~~ig~~~~g~l   71 (213)
                      ..+++....+..++++.+.+||+.+..++..+.+.+       ++++...+++    ..+..++++.+|.++|++..+.+
T Consensus         4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l   83 (485)
T KOG0569|consen    4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL   83 (485)
T ss_pred             CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446677778888888889999999999987754444       2444445554    45777889999999999999999


Q ss_pred             hhhhchhHHHHHHHHHHHHHH-Hhhhc---CchhHHHH----------hcCCCCCCCCCcchh----hHHHHHHHHHHHH
Q psy3292          72 CDRIGRKWTLLSTATLSAFSV-GQTFG---WSSPVLAY----------LVSPDSPVPMSEDES----SWVVASMEFGCWA  133 (213)
Q Consensus        72 ~d~~Grr~~~~~~~~~~~~~~-~~~~~---~~~~~l~~----------~~~~~~~~~~~~~~~----~~~~~~~~lg~~~  133 (213)
                      +||+|||.+++++.++..++. ...++   ++++++..          +.....|.++.|.+|    |...++..++..+
T Consensus        84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~  163 (485)
T KOG0569|consen   84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI  163 (485)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence            999999999999999988888 66554   44444444          233344556666655    3444445555555


Q ss_pred             HHHHHHHHH------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh-cCcccccccchhhhhhccccc
Q psy3292         134 IPFFAGMLC------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS-TGMLCDRKKHKSSLVRLEGSA  206 (213)
Q Consensus       134 g~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~-~g~~~~~~~a~~~l~~~~~~~  206 (213)
                      |.+++..++      +...|++.+....+++       ++..+.+.++||||+|+ +. +|   |+|||+++++++||.+
T Consensus       164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~-------~~~l~~l~~~PESPk~L-l~~k~---~~~~A~~sl~~y~G~~  232 (485)
T KOG0569|consen  164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPA-------LLQLALLPFLPESPKYL-LIKKG---DEEEARKALKFYRGKE  232 (485)
T ss_pred             HHHHHHHHccHHhcCCCcchHHHHHHHHHHH-------HHHHHHHhcCCCCcchH-HHHcC---CHHHHHHHHHHHhCCC
Confidence            555553333      2334666666666553       33344455669999999 65 89   9999999999999874

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.78  E-value=2e-18  Score=146.52  Aligned_cols=187  Identities=17%  Similarity=0.066  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCC--CCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSP--DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      .+.++.++.++.++.+.+|+|.+..+...|.+.+.  ..+.+.++.+.+++.+.+.+|..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            56778888999999999999999999988877541  1123456677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhcCc------hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy3292          83 STATLSAFSV-GQTFGWS------SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFF  137 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~------~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~  137 (213)
                      .+.++..++. ..+++++      ...+.+                  ...+..|...+....+.......+|..+++.+
T Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~  170 (502)
T TIGR00887        91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV  170 (502)
T ss_pred             HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988 8777765      333333                  23334444444444555666677777777777


Q ss_pred             HHHHHh-----------------------HhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccc-
Q psy3292         138 AGMLCD-----------------------RIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRK-  193 (213)
Q Consensus       138 ~g~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~-  193 (213)
                      +..+..                       .++||+.+.+..++++       +..+..+++||||+|+ +.+|   ++| 
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~-------i~~~~~~~lpESpr~l-~~~~---~~~~  239 (502)
T TIGR00887       171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL-------LALYFRLTIPETPRYT-ADVA---KDVE  239 (502)
T ss_pred             HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHH-HHhC---cchH
Confidence            665532                       1379999987776632       2222345559999999 9888   553 


Q ss_pred             cchhhhhhc
Q psy3292         194 KHKSSLVRL  202 (213)
Q Consensus       194 ~a~~~l~~~  202 (213)
                      ++++.++++
T Consensus       240 ~a~~~~~~~  248 (502)
T TIGR00887       240 QAASDMSAV  248 (502)
T ss_pred             HHHHHHHHH
Confidence            456555554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254|consensus

Probab=99.76  E-value=1e-17  Score=142.52  Aligned_cols=189  Identities=24%  Similarity=0.223  Sum_probs=141.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhcc--cccchhhhhhhhCC--CCCCCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292           5 TTRQILAGMSATLSAFSVGQT--FGWSSPVLAYLVSP--DSPVPMSE--DESSWVVASMEFGCWAIPFFAGMLCDRIGRK   78 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~--~~~~~~s~--~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr   78 (213)
                      +......+..+.++.+.+|++  .++.++..+.+.+.  ..+...+.  .+.+|+.+...+|..+|+++.|+++|++|||
T Consensus        40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk  119 (513)
T KOG0254|consen   40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK  119 (513)
T ss_pred             ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            456778889999999999998  77888888777661  11222222  4569999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhhhcCchhHHHH----------hcCCCCCCCCCcchh----hHHHHHHHHHHHHHHHHHHHH--
Q psy3292          79 WTLLSTATLSAFSV-GQTFGWSSPVLAY----------LVSPDSPVPMSEDES----SWVVASMEFGCWAIPFFAGML--  141 (213)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l--  141 (213)
                      ++++++.+++.+++ +.++++|..++.+          ......|.+.+|..+    +.+.+...+...+|.+++..+  
T Consensus       120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999 9999999999887          344456666666554    444444444444444443222  


Q ss_pred             -HhH--hccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhccc
Q psy3292         142 -CDR--IGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEG  204 (213)
Q Consensus       142 -~~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~  204 (213)
                       .+.  ++||..+.+..++++       ++....+++||||+|+ +.+|   +.++++++++++++
T Consensus       200 ~~~~~~~~Wr~~~~~~~i~~~-------~~~~~~~~~pesp~~L-~~~g---~~~~a~~~l~~l~g  254 (513)
T KOG0254|consen  200 GTSKVYAGWRIPLGLALIPAV-------ILALGMLFLPESPRWL-IEKG---RLEEAKRSLKRLRG  254 (513)
T ss_pred             hhccCCccHHHHHHHHHHHHH-------HHHHHHHhCCCChHHH-HHcC---ChHHHHHHHHHHhC
Confidence             222  379977777776643       2222366679999999 9999   99999999999998

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.75  E-value=1.7e-17  Score=139.73  Aligned_cols=187  Identities=17%  Similarity=0.208  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-----CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-----PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW   79 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~   79 (213)
                      .+....++..+.++.+.+|+|.+.+++..|.+.+     ...+++.++.+.++..+.+.+|..+++++.|+++||+|||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            4567778888889999999999999999988877     11234788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-Hhhhc---------Cc---hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHH
Q psy3292          80 TLLSTATLSAFSV-GQTFG---------WS---SPVLAY------------------LVSPDSPVPMSEDESSWVVASME  128 (213)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~---------~~---~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~  128 (213)
                      +++++..++.++. ..++.         ++   ...+++                  ...+..|...+....+.......
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999988887 66653         12   222222                  22233333333333344444455


Q ss_pred             HHHHHHHHHHHHHH--------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhh
Q psy3292         129 FGCWAIPFFAGMLC--------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLV  200 (213)
Q Consensus       129 lg~~~g~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~  200 (213)
                      +|..+++++++.+.        +.+|||+.+++.+++.+   +  .+  ...+++||+|+++ ..++   ++|++++.++
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~---~--~~--~~~~~l~~s~~~l-~~~~---~~~~~~~~~~  235 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPAL---L--FL--MLLYFVPETPRYL-MSRG---KQEQAEGILR  235 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHH---H--HH--HHHHcCCCCcHHH-HHcC---CHHHHHHHHH
Confidence            56665555544443        35699999988766632   1  11  1233459999998 6666   5666555444


Q ss_pred             hc
Q psy3292         201 RL  202 (213)
Q Consensus       201 ~~  202 (213)
                      +.
T Consensus       236 ~~  237 (479)
T PRK10077        236 KI  237 (479)
T ss_pred             HH
Confidence            44

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.72  E-value=6.8e-20  Score=153.22  Aligned_cols=182  Identities=22%  Similarity=0.226  Sum_probs=128.6

Q ss_pred             HHHHHHHHHhhcccccchhhhhhhhC--------CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292          13 MSATLSAFSVGQTFGWSSPVLAYLVS--------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus        13 ~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      +.+.++.+.+|+|.+..+...+....        .+.+.+.++.+.++..+...+|..+|+++.|+++||+|||++++++
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~   82 (451)
T PF00083_consen    3 LIASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIIS   82 (451)
T ss_pred             EeeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence            34567789999999999877754442        0111111345789999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcC---chhHHHH----------hcCCCCCCCCCcch----hhHHHHHH----HHHHHHHHHHHHHHH
Q psy3292          85 ATLSAFSV-GQTFGW---SSPVLAY----------LVSPDSPVPMSEDE----SSWVVASM----EFGCWAIPFFAGMLC  142 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~---~~~~l~~----------~~~~~~~~~~~~~~----~~~~~~~~----~lg~~~g~~~~g~l~  142 (213)
                      .++..++. +.++++   |++.+.+          ......+.+..|..    ++...+..    .+|..++..+...+.
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~  162 (451)
T PF00083_consen   83 ALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS  162 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999 999999   8777766          12223344444443    23333333    444444444433333


Q ss_pred             hH---hccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhcccc
Q psy3292         143 DR---IGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGS  205 (213)
Q Consensus       143 ~~---~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~~  205 (213)
                      +.   .+||..+....++++.     .+.  ..+++||||+|+ +.+|   |+|||++++++++++
T Consensus       163 ~~~~~~~Wr~~~~~~~~~~l~-----~~~--~~~~~pESP~wL-~~~~---~~~~A~~~l~~~~~~  217 (451)
T PF00083_consen  163 YYSDNWGWRILLIFGAIPSLL-----VLL--LRFFLPESPRWL-LSKG---RDEEAEKVLRKLRGK  217 (451)
T ss_pred             ccccccccccccccccccccc-----ccc--ccccccccccee-cccc---ccccccccccccccc
Confidence            32   3499999888888542     122  234459999999 9999   999999999997644

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.2e-16  Score=129.28  Aligned_cols=153  Identities=19%  Similarity=0.158  Sum_probs=140.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH
Q psy3292           4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS   83 (213)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~   83 (213)
                      +++..+......+++.|..|.++..+.+.+|++.+   |+++|+...|++.+.|.++..+++++...++||+.||+.++.
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            35566777888889999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292          84 TATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                      ...++.+++ ..++++|++.+.+                  ......|...+....+.+.+..+++..+|.+++.++.|.
T Consensus        84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~  163 (394)
T COG2814          84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL  163 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999999999 9999999999887                  345567777788888999999999999999999999999


Q ss_pred             hccchhhhhhcccch
Q psy3292         145 IGRKWTLLSTGMLCD  159 (213)
Q Consensus       145 ~g~~~~~~~~~~~~~  159 (213)
                      +|||.+|+.....++
T Consensus       164 ~GWR~~F~~ia~l~l  178 (394)
T COG2814         164 FGWRATFLAIAVLAL  178 (394)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999998877754

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.69  E-value=7e-17  Score=133.87  Aligned_cols=149  Identities=9%  Similarity=-0.049  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH
Q psy3292           7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT   86 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~   86 (213)
                      ..+.....+.++.+.+.+|....+...|.+.+   +++.++++.++..+++.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~   81 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV   81 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence            34556677777778889999999999999988   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh----
Q psy3292          87 LSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----  143 (213)
Q Consensus        87 ~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~----  143 (213)
                      +..++. ..++++|.+.+.+                  ...+..|...+....+.......+|..+++++++++.+    
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999 9999999887766                  01111121122223345555667788888888888764    


Q ss_pred             --Hhccchhhhhhcccc
Q psy3292         144 --RIGRKWTLLSTGMLC  158 (213)
Q Consensus       144 --~~g~~~~~~~~~~~~  158 (213)
                        ..|||+.+++.++++
T Consensus       162 ~~~~gwr~~f~~~~~~~  178 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPS  178 (412)
T ss_pred             CCccchhHHHHHHHHHH
Confidence              469999999877663

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.69  E-value=2.9e-16  Score=128.98  Aligned_cols=152  Identities=14%  Similarity=0.126  Sum_probs=124.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      +.++++|.......++.+.++++....++..|.+.+   +++.++.+.+++.+.+.++..+++++.|.++||+|||+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~   81 (405)
T TIGR00891         5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMV   81 (405)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            446677888888889999999999999999999998   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292          83 STATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                      ++.++..++. ...+.++++.+..                  ...+..|...+....+.......+|..+++.+.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 8888888877655                  11122222233334466666778889999999998888


Q ss_pred             Hhc--cchhhhhhccc
Q psy3292         144 RIG--RKWTLLSTGML  157 (213)
Q Consensus       144 ~~g--~~~~~~~~~~~  157 (213)
                      ..|  ||+.+.+..++
T Consensus       162 ~~~~~w~~~f~~~~~~  177 (405)
T TIGR00891       162 VWGDGWRALFFISILP  177 (405)
T ss_pred             hcCccHHHHHHHHHHH
Confidence            876  99988765544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.66  E-value=5.8e-16  Score=131.27  Aligned_cols=148  Identities=18%  Similarity=0.115  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH
Q psy3292           7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT   86 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~   86 (213)
                      +++.+...+.++.+....|....+..+|.+.+   +++.++++.+|..+.+.++..++.++.|+++||+|||+.++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~   79 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT   79 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            35667888888999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HhhhcCchhHHHH-----------h-------c-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292          87 LSAFSV-GQTFGWSSPVLAY-----------L-------V-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus        87 ~~~~~~-~~~~~~~~~~l~~-----------~-------~-~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                      ++.++. .+++++|.+.+.+           .       . ....|...+....+.......+|..+||.+++++.++.|
T Consensus        80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999 9999999888766           0       0 001111122223356667788899999999999999999


Q ss_pred             cchhhhhhccc
Q psy3292         147 RKWTLLSTGML  157 (213)
Q Consensus       147 ~~~~~~~~~~~  157 (213)
                      ||+.+++....
T Consensus       160 wr~~f~i~~~~  170 (495)
T PRK14995        160 WGSVFLINVPI  170 (495)
T ss_pred             hHHHHHHHHHH
Confidence            99999887655

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.65  E-value=1.2e-15  Score=125.96  Aligned_cols=170  Identities=17%  Similarity=0.185  Sum_probs=131.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH
Q psy3292           4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS   83 (213)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~   83 (213)
                      ..+++|.+...+.+..+.+++|....+...|.+.+   +++.++++.+++.+.+.++..+++++.|+++||+|||+++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            45688888899999999999999999999999999   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292          84 TATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                      +.++..++. ...+.++.+.+.+                  ...+..|...+....+.......+|..+++.+++.+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  165 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD  165 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999988888 8888888877655                  111122222223333555566677888888888888888


Q ss_pred             hccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292         145 IGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT  182 (213)
Q Consensus       145 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~  182 (213)
                      .+||+.+++.+++.+      ........+.||+|...
T Consensus       166 ~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~  197 (406)
T PRK11551        166 AAWRHIFYVGGVGPL------LLVPLLMRWLPESRAFA  197 (406)
T ss_pred             cCHHHHHHHHHHHHH------HHHHHHHHhCCCChhHH
Confidence            899998887665422      11111223348888765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.63  E-value=2.9e-15  Score=123.25  Aligned_cols=150  Identities=15%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA   85 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~   85 (213)
                      +++|.....+.++.+....+.....+..|.+.+   +++.++++.++..+.+.++..+++++.|++.||+|||+.+..+.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            334444444455555554444455667899998   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292          86 TLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                      .+..++. ...+++|++.+.+                  ...+..|...+....+.......+|..+|+++++.+.+.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g  161 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG  161 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            9999999 9999999888766                  11122233333444566777788899999999999999999


Q ss_pred             cchhhhhhcccc
Q psy3292         147 RKWTLLSTGMLC  158 (213)
Q Consensus       147 ~~~~~~~~~~~~  158 (213)
                      ||+.+++.++++
T Consensus       162 w~~~f~~~~~~~  173 (390)
T PRK03545        162 WRTTFLAIGGGA  173 (390)
T ss_pred             HHHHHHHHHHHH
Confidence            999998877663

>KOG0255|consensus

Probab=99.62  E-value=7.9e-16  Score=131.20  Aligned_cols=148  Identities=18%  Similarity=0.111  Sum_probs=112.2

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------h
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------L  106 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------~  106 (213)
                      .+..+.....+..+++.+|.++|+++.|+++||+|||++++.+.++..++. ..++++|++.+.+              .
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence            556788899999999999999999999999999999999999999999999 9999999999887              0


Q ss_pred             cCCCCCCCCCcchhhHH---HHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3292         107 VSPDSPVPMSEDESSWV---VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTL  183 (213)
Q Consensus       107 ~~~~~~~~~~~~~~~~~---~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g  183 (213)
                      ..........++.++..   ......++.+++..++++..  +||+.+++..+++++     .+..  .++.||||||+ 
T Consensus       192 ~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~-----~~~~--~~l~~Es~rwl-  261 (521)
T KOG0255|consen  192 GFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGL-----FLLL--WFLPPESPRWL-  261 (521)
T ss_pred             hHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH-----HHHH--HHccCcChHHH-
Confidence            00111122333333332   33445566666677777766  899999998888542     1111  33336999999 


Q ss_pred             hhcCcccccccchhhhhhc
Q psy3292         184 LSTGMLCDRKKHKSSLVRL  202 (213)
Q Consensus       184 ~~~g~~~~~~~a~~~l~~~  202 (213)
                      +.+|   +.++|.+.+++.
T Consensus       262 ~~~g---~~~~a~~~l~~~  277 (521)
T KOG0255|consen  262 LSKG---RIDEAIKILKKI  277 (521)
T ss_pred             HHcC---chHHHHHHHHHH
Confidence            9999   888888888875

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.62  E-value=3.4e-15  Score=124.73  Aligned_cols=174  Identities=22%  Similarity=0.219  Sum_probs=123.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCC--------CChhhHHHHHHHHHHHHhhhhhhhHHhhhh
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVP--------MSEDESSWVVASMEFGCWAIPFFAGMLCDR   74 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~   74 (213)
                      +++++.+..+.++.++.+.+++|.+..++..|...+   +++        .++.+.+++.+++.++..+++++.|+++||
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~   97 (481)
T TIGR00879        21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR   97 (481)
T ss_pred             cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence            345667777888888889999999999988877766   333        558999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHH-HhhhcCc---hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHH
Q psy3292          75 IGRKWTLLSTATLSAFSV-GQTFGWS---SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCW  132 (213)
Q Consensus        75 ~Grr~~~~~~~~~~~~~~-~~~~~~~---~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~  132 (213)
                      +|||+++..+.++..++. ...+..+   ++.+.+                  ...+..|...+....+.......+|..
T Consensus        98 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  177 (481)
T TIGR00879        98 FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL  177 (481)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH
Confidence            999999999999998888 7644332   223433                  122223333333344555666677777


Q ss_pred             HHHHHH---HHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy3292         133 AIPFFA---GMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTG  187 (213)
Q Consensus       133 ~g~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g  187 (213)
                      +++.++   +...+..|||+.+++..+..+       +.....+++||+|++. ..++
T Consensus       178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~-------~~~~~~~~l~~~~~~~-~~~~  227 (481)
T TIGR00879       178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAG-------LLFLGLFFLPESPRWL-VGKG  227 (481)
T ss_pred             HHHHHHHHhhcCCCCccHHHHHHHHHHHHH-------HHHHHHhcCCCChHHH-HHcC
Confidence            777777   555577899999988554421       1122234448988877 5554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.61  E-value=2.9e-15  Score=127.15  Aligned_cols=154  Identities=19%  Similarity=0.176  Sum_probs=110.2

Q ss_pred             hhhhhhhCCCCCCCCC---hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-
Q psy3292          31 PVLAYLVSPDSPVPMS---EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s---~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-  105 (213)
                      +..|.+.+   |++++   +.+.++..+++.+|..+|+++.|+++||+|||+++.++.++..++. ..+++++++.+.+ 
T Consensus       110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  186 (505)
T TIGR00898       110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF  186 (505)
T ss_pred             cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            34566777   78888   8999999999999999999999999999999999999999999999 9999999887766 


Q ss_pred             -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHH
Q psy3292         106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLL  168 (213)
Q Consensus       106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~  168 (213)
                                       ...+..|...+....+.....+.+|..+++.+++.+.+   ||+.+++.++++++   .    
T Consensus       187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~---~----  256 (505)
T TIGR00898       187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFL---F----  256 (505)
T ss_pred             HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHH---H----
Confidence                             11122222222222233334455566666666555443   89998887766321   1    


Q ss_pred             HHHHHHHHHHHHHHHhhcCcccccccchhhhhh
Q psy3292         169 STGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVR  201 (213)
Q Consensus       169 ~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~  201 (213)
                      ....+++||+|+|+ ..++   +.+++++.+++
T Consensus       257 ~~~~~~~~esp~~l-~~~~---~~~~a~~~l~~  285 (505)
T TIGR00898       257 FLLSWFVPESPRWL-ISQG---RIEEALKILQR  285 (505)
T ss_pred             HHHHHhcCCChHHH-HHCC---CHHHHHHHHHH
Confidence            11224459999999 8888   77776666554

>TIGR00895 2A0115 benzoate transport

Probab=99.59  E-value=1.2e-14  Score=118.91  Aligned_cols=150  Identities=19%  Similarity=0.150  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      +++++.......+..+..+++....++..|.+.+   +++.++.+.+++.+...++..+++++.|+++||+|||+.+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~   88 (398)
T TIGR00895        12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS   88 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence            3445666666677778888888888888999988   8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      ..+..++. ...+.++.+.+.+                  ...+..|...+....+.......+|..+++.+.+++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  168 (398)
T TIGR00895        89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF  168 (398)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence            99988888 8888888776655                  0111112222233345566667889999999999999999


Q ss_pred             ccchhhhhhccc
Q psy3292         146 GRKWTLLSTGML  157 (213)
Q Consensus       146 g~~~~~~~~~~~  157 (213)
                      ||++.+.+.++.
T Consensus       169 g~~~~~~~~~~~  180 (398)
T TIGR00895       169 GWRSLFYVGGIA  180 (398)
T ss_pred             cceeehhhhhhH
Confidence            999998877544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.59  E-value=2.1e-14  Score=121.69  Aligned_cols=164  Identities=18%  Similarity=-0.028  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhh-HHH-----HHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDE-SSW-----VVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      ..+...+.++.+.+++|.+.++...|.+.+   ++..+.+. .++     ..++..++..+|+++.|+++||+|||+++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   91 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            345667778999999999999999998887   55433211 122     247778999999999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhcCchhH--------HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy3292          83 STATLSAFSV-GQTFGWSSPV--------LAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIP  135 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~--------l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~  135 (213)
                      ++.+++.++. .+++++|+..        +.+                  ...+..|...+....++......+|..+|+
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~  171 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA  171 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999 9999999864        222                  223333433333333444444445555555


Q ss_pred             HHHHHHH--------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292         136 FFAGMLC--------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT  182 (213)
Q Consensus       136 ~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~  182 (213)
                      .+...+.        +.+|||+.+++..++++   +  .+.  .....||+|++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l---~--~~~--~~~~~~esp~~~  219 (490)
T PRK10642        172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGI---I--GLY--LRHALEETPAFQ  219 (490)
T ss_pred             HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH---H--HHH--HHHcCCCChhHH
Confidence            4443333        25799999988665422   1  111  122349999986

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.58  E-value=1.6e-14  Score=119.99  Aligned_cols=150  Identities=15%  Similarity=0.151  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      +++++.....+.++.+.++++.....+..|.+.+   +++.++.+.++..+++.++..+++++.|+++||+|||+++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            3455666777888888999999999999999998   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      .+...++. ...++++.+.+.+                  ...+..|...+....+.......+|..+++.+.+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            99999999 9889888877766                  1122222222333334555556777777777777778889


Q ss_pred             ccchhhhhhccc
Q psy3292         146 GRKWTLLSTGML  157 (213)
Q Consensus       146 g~~~~~~~~~~~  157 (213)
                      |||+.+++..++
T Consensus       170 ~w~~~f~i~~~~  181 (426)
T PRK12307        170 GWRAAFFVGLLP  181 (426)
T ss_pred             CHHHHHHHHHHH
Confidence            999999875433

>KOG0253|consensus

Probab=99.57  E-value=8.5e-15  Score=116.16  Aligned_cols=182  Identities=14%  Similarity=0.037  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA   85 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~   85 (213)
                      +.|+.....+..+.+.+.+.....+-+.|...+   .++.++.+..++....+.|..+|+..+|..+|++|||+...+..
T Consensus        74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            456677777778888877777777777788888   88899999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HhhhcCchhHHHHh------c-----------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292          86 TLSAFSV-GQTFGWSSPVLAYL------V-----------SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR  147 (213)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~l~~~------~-----------~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~  147 (213)
                      ....+.. +...++|+..+.++      .           .+..|...+... ..+...+.+|..+...+.-.++.++||
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~-~V~~~~waig~v~ea~law~vm~~~gw  229 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLL-TVMSFFWAIGQVFEALLAWGVMSNFGW  229 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            9999999 99999999888771      1           111111111111 223367888999999999999999999


Q ss_pred             chhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhc
Q psy3292         148 KWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRL  202 (213)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~  202 (213)
                      ||.+...+.+   .    .+.....+++|||||+. +.+|   +.++|.+.|+|.
T Consensus       230 r~~l~~~~~p---l----~~~a~f~~w~~ESpRf~-~~~G---~~~kAletL~ki  273 (528)
T KOG0253|consen  230 RYLLFTSSTP---L----MFAARFLVWVYESPRFY-LAKG---DDYKALETLHKI  273 (528)
T ss_pred             HHHHHHHHhH---H----HHHHHHHhhcccCcchh-hhcC---ChHHHHHHHHHH
Confidence            9999888866   2    22233345559999999 9999   889988887765

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.57  E-value=2.4e-14  Score=118.13  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      +++.|.......++.+....+.-...+.+|.+.+   +++.++++.++..+.+.++..+++++.|++.||+|||+.+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            3445554444455544444444444566788888   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      ..+..++. ...++++++.+.+                  ...+..|...+....+...+..++|..+|+.+++.+.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~  171 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI  171 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999 8888888887766                  1112222222333346666677899999999999999999


Q ss_pred             ccchhhhhhccc
Q psy3292         146 GRKWTLLSTGML  157 (213)
Q Consensus       146 g~~~~~~~~~~~  157 (213)
                      |||+.+++.++.
T Consensus       172 gw~~~f~~~~~l  183 (394)
T PRK10213        172 GWRNVFNAAAVM  183 (394)
T ss_pred             CHHHHHHHHHHH
Confidence            999999877655

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.57  E-value=2.5e-14  Score=118.72  Aligned_cols=144  Identities=17%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292          11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF   90 (213)
Q Consensus        11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~   90 (213)
                      .+....+..+....+.....|.+|.+.+   +++.++.+.++..+++.++..+++++.|+++||+|||+++..+.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            3344455555555667777888899888   8999999999999999999999999999999999999999999999999


Q ss_pred             HH-HhhhcCchhHHHH------h------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292          91 SV-GQTFGWSSPVLAY------L------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL  151 (213)
Q Consensus        91 ~~-~~~~~~~~~~l~~------~------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~  151 (213)
                      +. ...++++.+.+.+      .            ..+..+........+...+...+|..+|+++++.+.+..|||+.+
T Consensus        94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f  173 (413)
T PRK15403         94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF  173 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99 9999999877765      0            001111111122235566677889999999999999999999999


Q ss_pred             hhhccc
Q psy3292         152 LSTGML  157 (213)
Q Consensus       152 ~~~~~~  157 (213)
                      ++..+.
T Consensus       174 ~~~~~~  179 (413)
T PRK15403        174 AIIAVM  179 (413)
T ss_pred             HHHHHH
Confidence            887766

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.56  E-value=2.5e-14  Score=118.21  Aligned_cols=150  Identities=13%  Similarity=0.108  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      +++.+.......+..+...++.....+..|.+.+   +++.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   84 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG   84 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            4566667777777777777778888888899988   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH---h---------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY---L---------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      .....++. ...++++++.+..   +               ..+..|...+....+.......++..+|+.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402         85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999888 8888888776655   0               001111111112224445556678889999999999999


Q ss_pred             ccchhhhhhccc
Q psy3292         146 GRKWTLLSTGML  157 (213)
Q Consensus       146 g~~~~~~~~~~~  157 (213)
                      |||+.+++.++.
T Consensus       165 ~w~~~~~~~~~~  176 (406)
T PRK15402        165 PWRGMFVLFAAL  176 (406)
T ss_pred             CccHHHHHHHHH
Confidence            999998776665

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.55  E-value=6.5e-14  Score=116.90  Aligned_cols=147  Identities=12%  Similarity=0.073  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292           8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL   87 (213)
Q Consensus         8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~   87 (213)
                      ++.+.....++.+...++....+...|.+.+   +++.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            3344455556666666777777888899998   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292          88 SAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus        88 ~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                      ..++. ...++++++.+..                  ...+..|...+....+......++|..+++.+.+++.+.+|||
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            99999 8888888876654                  0111111112222335556667889999999999999999999


Q ss_pred             hhhhhhccc
Q psy3292         149 WTLLSTGML  157 (213)
Q Consensus       149 ~~~~~~~~~  157 (213)
                      +.+.+.+++
T Consensus       178 ~~f~~~~i~  186 (434)
T PRK11663        178 YGMMIAGII  186 (434)
T ss_pred             HHHHHHHHH
Confidence            999887665

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.55  E-value=3.6e-14  Score=120.11  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA   85 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~   85 (213)
                      ++.+.....+.++.+.+++|.+..++..|.+.+   +++.++.+.++..+.+.++..+++++.|+++||+|||+.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   92 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI   92 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            445566677777888889999999999999988   89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HhhhcCchhHHHH------h------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292          86 TLSAFSV-GQTFGWSSPVLAY------L------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~l~~------~------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                      ++..++. ...++++++.+.+      .            ..+..+...+....+.......+|..+++.+.+.+.+.+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  172 (496)
T PRK03893         93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999 8888888877655      0            1111111111222355666678888999999999999999


Q ss_pred             cchhhhhhccc
Q psy3292         147 RKWTLLSTGML  157 (213)
Q Consensus       147 ~~~~~~~~~~~  157 (213)
                      ||+.+.+..++
T Consensus       173 w~~~f~~~~~~  183 (496)
T PRK03893        173 WRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHH
Confidence            99998764443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.55  E-value=1.7e-14  Score=121.66  Aligned_cols=145  Identities=11%  Similarity=0.069  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292          11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF   90 (213)
Q Consensus        11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~   90 (213)
                      +...+.++.+...+|....++..|.+.+   +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   79 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3455666788888999999999999999   8999999999999999999999999999999999999999999999999


Q ss_pred             HH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292          91 SV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL  151 (213)
Q Consensus        91 ~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~  151 (213)
                      +. ...+++|.+.+.+                  ...+..|...+....+.......+|..+|+.+++++.+++|||+.+
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f  159 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF  159 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence            99 9999998887765                  1111222222233345566667888899999999999999999999


Q ss_pred             hhhcccc
Q psy3292         152 LSTGMLC  158 (213)
Q Consensus       152 ~~~~~~~  158 (213)
                      +...+++
T Consensus       160 ~~~~~~~  166 (485)
T TIGR00711       160 LINVPIG  166 (485)
T ss_pred             hhhhHHH
Confidence            8877663

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.54  E-value=1.6e-14  Score=118.13  Aligned_cols=146  Identities=14%  Similarity=0.075  Sum_probs=103.5

Q ss_pred             cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-
Q psy3292          28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-  105 (213)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-  105 (213)
                      ..++..|.+++   |++.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+......+. .....++++.+.+ 
T Consensus         9 ~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (368)
T TIGR00903         9 TFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC   85 (368)
T ss_pred             HHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34678899999   999999999999999999999999999999999999998766655554444 3344367766655 


Q ss_pred             --h--------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHH
Q psy3292         106 --L--------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS  169 (213)
Q Consensus       106 --~--------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~  169 (213)
                        +              ..+..|...+....+.......+|..+++++++++.+.+|||+.++..++++++   . .+  
T Consensus        86 R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~---~-~~--  159 (368)
T TIGR00903        86 QLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA---G-II--  159 (368)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH---H-HH--
Confidence              0              111122222233335555667889999999999999999999999886666431   1 11  


Q ss_pred             HHHHHHHHHHHHH
Q psy3292         170 TGMLCDRIGRKWT  182 (213)
Q Consensus       170 ~~~~~~~es~~~~  182 (213)
                      ...++.||+|++.
T Consensus       160 ~~~~~lp~~p~~~  172 (368)
T TIGR00903       160 LVLAALPALPFQA  172 (368)
T ss_pred             HHHHHcCCCCCCC
Confidence            2233448888654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.53  E-value=4.9e-14  Score=115.72  Aligned_cols=140  Identities=17%  Similarity=0.106  Sum_probs=111.7

Q ss_pred             HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292          15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G   93 (213)
Q Consensus        15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~   93 (213)
                      ..++.+..+.......+.+|.+.+   +++.++++.++..+.+.++..+++++.|++.||+|||+++..+..+..++. .
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            344556666667777888899999   999999999999999999999999999999999999999999999999999 9


Q ss_pred             hhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292          94 QTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus        94 ~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                      .++++|++.+.+                  ...+..+...+....+.......+|..+|+++++++.+..|||+.+.+.+
T Consensus        85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence            999999888766                  01111121111222344555667888889999999999999999998877


Q ss_pred             cc
Q psy3292         156 ML  157 (213)
Q Consensus       156 ~~  157 (213)
                      +.
T Consensus       165 ~~  166 (382)
T PRK10091        165 VF  166 (382)
T ss_pred             HH
Confidence            66

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.52  E-value=1.7e-13  Score=114.25  Aligned_cols=96  Identities=19%  Similarity=0.045  Sum_probs=76.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCC---CCChhhHHH---HHHHHHHHHhhhhhhhHHhhhhhc
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPV---PMSEDESSW---VVASMEFGCWAIPFFAGMLCDRIG   76 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~s~~~~~~---~~s~~~~g~~ig~~~~g~l~d~~G   76 (213)
                      +++.+++.....+.++.+.+++|....+...|.+.+   ++   +.++.+.+.   ..+...++..+|+++.|+++||+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~G   91 (432)
T PRK10406         15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHG   91 (432)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            346677777777788999999999999988898887   55   344444333   344555666699999999999999


Q ss_pred             hhHHHHHHHHHHHHHH-HhhhcCchh
Q psy3292          77 RKWTLLSTATLSAFSV-GQTFGWSSP  101 (213)
Q Consensus        77 rr~~~~~~~~~~~~~~-~~~~~~~~~  101 (213)
                      ||+++..+...+.++. ..++++++.
T Consensus        92 rr~~l~~~~~~~~~~~~~~~~~~~~~  117 (432)
T PRK10406         92 RKKSMLISVCMMCFGSLVIACLPGYE  117 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCch
Confidence            9999999999999999 999888764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.52  E-value=3.8e-14  Score=114.18  Aligned_cols=139  Identities=25%  Similarity=0.371  Sum_probs=113.0

Q ss_pred             HHHHHhhcccccchhhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292          17 LSAFSVGQTFGWSSPVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ   94 (213)
Q Consensus        17 ~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~   94 (213)
                      ++.+..+++.+...+..| .+.+   +++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++. ..
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            445566666777788888 8888   899999999999999999999999999999999999999999999999996 66


Q ss_pred             hhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292          95 TFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM  156 (213)
Q Consensus        95 ~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~  156 (213)
                      .++++.+.+.+                  ...+..|...++...+.......+|..+|+.+++.+.+..|||+.+++.++
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            56666664444                  233344444455556778888999999999999999999999999988887


Q ss_pred             cc
Q psy3292         157 LC  158 (213)
Q Consensus       157 ~~  158 (213)
                      .+
T Consensus       160 ~~  161 (352)
T PF07690_consen  160 LS  161 (352)
T ss_dssp             HH
T ss_pred             hh
Confidence            74

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.51  E-value=1.1e-13  Score=113.13  Aligned_cols=134  Identities=16%  Similarity=0.104  Sum_probs=107.8

Q ss_pred             HhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc
Q psy3292          21 SVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS   99 (213)
Q Consensus        21 ~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~   99 (213)
                      ..+.+.....+..|.+.+   +++.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++. ...+.++
T Consensus        16 ~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        16 LGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            334556667788899988   899999999999999999999999999999999999999999999999999 8888888


Q ss_pred             hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         100 SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       100 ~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+.+.+                  ...+..|...+....+.......+|..+|+.+++.+.+..|||+.+++..+.
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~  168 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA  168 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            777655                  1112222222233346666678889999999999999999999988776655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10504 putative transporter; Provisional

Probab=99.50  E-value=2.2e-13  Score=114.69  Aligned_cols=143  Identities=15%  Similarity=0.110  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHH
Q psy3292          12 GMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFS   91 (213)
Q Consensus        12 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~   91 (213)
                      .....++.+...++....++..|.+.+   +++.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            344556677788888888889999998   89999999999999999999999999999999999999999998888888


Q ss_pred             H-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhh
Q psy3292          92 V-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL  152 (213)
Q Consensus        92 ~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~  152 (213)
                      . ...++++.+.+.+                  ...+..|........+......++|..+|+.+++.+.+..|||+.+.
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            8 8788888776654                  00111111111122345555667899999999999999999999998


Q ss_pred             hhccc
Q psy3292         153 STGML  157 (213)
Q Consensus       153 ~~~~~  157 (213)
                      +....
T Consensus       169 ~~~~~  173 (471)
T PRK10504        169 INIPV  173 (471)
T ss_pred             HHHHH
Confidence            76655

>PRK03699 putative transporter; Provisional

Probab=99.50  E-value=3.7e-13  Score=110.96  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH
Q psy3292           7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT   86 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~   86 (213)
                      +++.......++.+..+.+....++..|.+.+   +++.|+++.++..+.+.++..+++++.|++.||+|||+++..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~   80 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFA   80 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34444556667788888888888889999999   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HhhhcCchhHHHH----------hcCCC----CCCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHh-Hhc
Q psy3292          87 LSAFSV-GQTFGWSSPVLAY----------LVSPD----SPVPMSEDES----SWVVASMEFGCWAIPFFAGMLCD-RIG  146 (213)
Q Consensus        87 ~~~~~~-~~~~~~~~~~l~~----------~~~~~----~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~-~~g  146 (213)
                      +..++. ...++++++.+.+          .....    ......++..    +.......+|..+++.+.+.+.+ ..|
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g  160 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE  160 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999 8888888876654          00000    0111222223    23334556777888888887754 579


Q ss_pred             cchhhhhhccc
Q psy3292         147 RKWTLLSTGML  157 (213)
Q Consensus       147 ~~~~~~~~~~~  157 (213)
                      ||+.+...+++
T Consensus       161 w~~~f~~~~~~  171 (394)
T PRK03699        161 WYWVYACIGLV  171 (394)
T ss_pred             HHHHHHHHHHH
Confidence            99999876665

>PRK09952 shikimate transporter; Provisional

Probab=99.48  E-value=8.2e-13  Score=110.44  Aligned_cols=161  Identities=14%  Similarity=0.026  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhhhh-hCCCCCC--CCChhhHHHHH-----HHHHHHHhhhhhhhHHhhhhhchh
Q psy3292           7 RQILAGMSATLSAFSVGQTFGWSSPVLAYL-VSPDSPV--PMSEDESSWVV-----ASMEFGCWAIPFFAGMLCDRIGRK   78 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~--~~s~~~~~~~~-----s~~~~g~~ig~~~~g~l~d~~Grr   78 (213)
                      +++.+.....++.+.+++|....+...|.+ .+   ++  +.++. .++..     ++..++..+|+++.|+++||+|||
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr   94 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNR---EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence            334567777788999999999988777643 33   22  44544 45543     345566789999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhhhcCchhH--------HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHH
Q psy3292          79 WTLLSTATLSAFSV-GQTFGWSSPV--------LAY------------------LVSPDSPVPMSEDESSWVVASMEFGC  131 (213)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~~~--------l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~  131 (213)
                      +++..+..++.++. .+++++++..        +..                  ...+..|    +++++...+....|.
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p----~~~rg~~~~~~~~g~  170 (438)
T PRK09952         95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP----KNKKAFYSSGVQVGY  170 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC----CCCCcHHHHHHHHHH
Confidence            99999999999999 9999999763        222                  1112222    233344444444444


Q ss_pred             HHHHHHH----HHHH--------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292         132 WAIPFFA----GMLC--------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT  182 (213)
Q Consensus       132 ~~g~~~~----g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~  182 (213)
                      .+|++++    ..+.        +.+|||..+++..++.+   +.  +  ......||+|++.
T Consensus       171 ~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l---~~--~--~l~~~~~es~~~~  226 (438)
T PRK09952        171 GVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL---IA--L--WVRNGMEESAEFE  226 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH---HH--H--HHHHhCCCChhHH
Confidence            4444443    4443        24799999988766522   11  1  1122348999886

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.47  E-value=4.3e-13  Score=110.38  Aligned_cols=130  Identities=19%  Similarity=0.182  Sum_probs=99.1

Q ss_pred             ccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292          25 TFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL  103 (213)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l  103 (213)
                      ......+..|.+.+   +++.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.....++. ...++++.+.+
T Consensus        23 ~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   99 (394)
T PRK11652         23 AQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVL   99 (394)
T ss_pred             HHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            34556677888888   899999999999999999999999999999999999999999999999888 88888887766


Q ss_pred             HH------hcC--------CCCCCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         104 AY------LVS--------PDSPVPMSEDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       104 ~~------~~~--------~~~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+      ...        ...+....+++.    +.......++..+|+.+++.+.+..|||+.+....+.
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~  171 (394)
T PRK11652        100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL  171 (394)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            55      000        000111222223    2333445666778888899999999999998876655

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.47  E-value=1.3e-13  Score=111.48  Aligned_cols=137  Identities=16%  Similarity=0.089  Sum_probs=105.9

Q ss_pred             HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292          18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF   96 (213)
Q Consensus        18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~   96 (213)
                      +.+...+..+...+..|.+.+   +.+.++.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++. ...+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            344445556666778888888   788999999999999999999999999999999999999999988887777 6666


Q ss_pred             cC-----chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292          97 GW-----SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS  153 (213)
Q Consensus        97 ~~-----~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~  153 (213)
                      ..     +.+.+.+                  ...+..|...+....+.......+|..+|+.+++.+.+..|||+.++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            55     6666544                  111222222223334666777889999999999999999999999877


Q ss_pred             hccc
Q psy3292         154 TGML  157 (213)
Q Consensus       154 ~~~~  157 (213)
                      ..+.
T Consensus       164 ~~~~  167 (365)
T TIGR00900       164 DAVG  167 (365)
T ss_pred             HHHH
Confidence            6655

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.46  E-value=1.5e-12  Score=107.43  Aligned_cols=150  Identities=11%  Similarity=-0.047  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH
Q psy3292           4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS   83 (213)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~   83 (213)
                      +....|........+.+.. --....++..|.+++   |++.|+++.++..+.+.++..+++++.|+++||+|||+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~   79 (393)
T PRK09705          4 KFPLNFMLLVLVLIGLNMR-PLLTSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAI   79 (393)
T ss_pred             ccchHHHHHHHHHHHHHcc-hhhhccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHH
Confidence            3334444444444444332 223566788999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhhhcCchhHHHH----------hcC----CCCCCCCC---cchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          84 TATLSAFSV-GQTFGWSSPVLAY----------LVS----PDSPVPMS---EDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~l~~----------~~~----~~~~~~~~---~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      +..++.++. ..++++|++.+..          ...    .....+.+   ....+........|..+|+.+++++.++.
T Consensus        80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~  159 (393)
T PRK09705         80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS  159 (393)
T ss_pred             HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999 9999999988766          000    01111122   22224444445678888888888888875


Q ss_pred             -ccchhhhhhccc
Q psy3292         146 -GRKWTLLSTGML  157 (213)
Q Consensus       146 -g~~~~~~~~~~~  157 (213)
                       |||+.+.+..+.
T Consensus       160 ~~w~~~~~~~~~~  172 (393)
T PRK09705        160 ETWYQTLAWWALP  172 (393)
T ss_pred             CCHHHHHHHHHHH
Confidence             899877554433

>PRK11043 putative transporter; Provisional

Probab=99.45  E-value=6.7e-13  Score=109.53  Aligned_cols=129  Identities=18%  Similarity=0.150  Sum_probs=100.6

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA  104 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~  104 (213)
                      .....|..|.+.+   +++.++++.++..+++.++..+++++.|+++||+|||+.+..+..+..++. ...++++.+.+.
T Consensus        22 ~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (401)
T PRK11043         22 TDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL   98 (401)
T ss_pred             HHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4555677788888   889999999999999999999999999999999999999999999998888 888888877765


Q ss_pred             H---h---------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y---L---------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      +   +               ..+..+........+.......++..+++.+++++.+.+|||+.++...+.
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~  169 (401)
T PRK11043         99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI  169 (401)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            5   0               011111111111123444556778889999999999999999998776655

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.44  E-value=2.1e-12  Score=109.50  Aligned_cols=159  Identities=12%  Similarity=0.051  Sum_probs=102.8

Q ss_pred             hhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hh--hhcCchhHHHH-
Q psy3292          32 VLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQ--TFGWSSPVLAY-  105 (213)
Q Consensus        32 ~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~--~~~~~~~~l~~-  105 (213)
                      ..|.+. +   .++.++.+.++..+...++..++.+..|+++||+|||+.+..+.+...+..  ..  ..+++...+.+ 
T Consensus       272 ~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (490)
T PRK10642        272 YMPSYLSH---NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG  348 (490)
T ss_pred             HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            445554 4   567788888888888899999999999999999999999887776443322  12  22333332211 


Q ss_pred             -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhcccchhhhHHHHH
Q psy3292         106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGMLCDRIGRKWTL  167 (213)
Q Consensus       106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~l  167 (213)
                                       ...+..|...+....+.......+++.++|.+.+++.+..+ |+..++...+++       ++
T Consensus       349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~-------~i  421 (490)
T PRK10642        349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA-------VI  421 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-------HH
Confidence                             11223444444444454444455566778888898888765 454544433332       12


Q ss_pred             HHHHHHHHHHHHHHHHhhc-----Ccccccccchhhhhhccc
Q psy3292         168 LSTGMLCDRIGRKWTLLST-----GMLCDRKKHKSSLVRLEG  204 (213)
Q Consensus       168 ~~~~~~~~~es~~~~g~~~-----g~~~~~~~a~~~l~~~~~  204 (213)
                      .....++.||+|+|+ +.+     |   |+|||+++|+|+|+
T Consensus       422 ~~~~~~~~pes~~~~-~~~~~~~~~---~~~~a~~~l~~~~~  459 (490)
T PRK10642        422 GLITGVTMKETANRP-LKGATPAAS---DIQEAKEILVEHYD  459 (490)
T ss_pred             HHHHHHHhccccCCC-CCCcccccc---chhhHHHHhhcccc
Confidence            222334459999998 754     7   99999999999975

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.43  E-value=2.1e-13  Score=111.09  Aligned_cols=134  Identities=18%  Similarity=0.154  Sum_probs=107.7

Q ss_pred             HhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc
Q psy3292          21 SVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS   99 (213)
Q Consensus        21 ~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~   99 (213)
                      ...+|....+...|.+.+   +++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++. ...++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             HHHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            344566777788899988   899999999999999999999999999999999999999999999999999 8888888


Q ss_pred             hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         100 SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       100 ~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+.+.+                  ...+..|...+....+.......+|..+++.+.+.+.+..|||+.+...+++
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL  157 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            877655                  1111222222222335566667889999999999999999999999877665

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=4e-13  Score=109.01  Aligned_cols=138  Identities=12%  Similarity=0.088  Sum_probs=101.5

Q ss_pred             HHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292          16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ   94 (213)
Q Consensus        16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~   94 (213)
                      .+..+..+..+ ..++..|.+.+   +++.++++.++..+++.++..+++++.|+++||+|||+++..+.++..++. ..
T Consensus        10 ~~~~~~~~~~~-~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~   85 (377)
T TIGR00890        10 VIMCFTSGYVY-TWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY   85 (377)
T ss_pred             HHHHHHhhHHh-hhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence            33344454444 34677899998   899999999999999999999999999999999999999999999999999 99


Q ss_pred             hhcCchhHHHHh------------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292          95 TFGWSSPVLAYL------------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM  156 (213)
Q Consensus        95 ~~~~~~~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~  156 (213)
                      ++++|++.+.+.                  ..+..| ..+....+.......+|..+++.+.+.+.+..|||+.++..++
T Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~  164 (377)
T TIGR00890        86 AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence            999998877650                  000111 1122222344444455655555566666677899999988776


Q ss_pred             cc
Q psy3292         157 LC  158 (213)
Q Consensus       157 ~~  158 (213)
                      .+
T Consensus       165 ~~  166 (377)
T TIGR00890       165 IF  166 (377)
T ss_pred             HH
Confidence            63

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=1.7e-12  Score=105.84  Aligned_cols=137  Identities=18%  Similarity=0.122  Sum_probs=101.1

Q ss_pred             HHHHhhcccccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH-HHHHHHHHH-Hh
Q psy3292          18 SAFSVGQTFGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS-TATLSAFSV-GQ   94 (213)
Q Consensus        18 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~-~~~~~~~~~-~~   94 (213)
                      ..+..++..+...|.+|.+ .+   +++.++.+.+++.+++.++..+.+++.|+++||+|||+.++. +.....++. ..
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            3556667777778888764 56   789999999999999999999999999999999999887655 455556666 77


Q ss_pred             hhcCchhHHHH-------hcCCCCCC-------CCCcc--h----hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhh
Q psy3292          95 TFGWSSPVLAY-------LVSPDSPV-------PMSED--E----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST  154 (213)
Q Consensus        95 ~~~~~~~~l~~-------~~~~~~~~-------~~~~~--~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~  154 (213)
                      .++++++.+.+       ......|.       ..+++  .    .+...+..++|..+|+.+++.+.+.+|||+.+++.
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            88888776654       00111111       11111  1    23444557889999999999999999999999887


Q ss_pred             ccc
Q psy3292         155 GML  157 (213)
Q Consensus       155 ~~~  157 (213)
                      +++
T Consensus       162 ~~~  164 (375)
T TIGR00899       162 ALA  164 (375)
T ss_pred             HHH
Confidence            766

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.40  E-value=5.6e-12  Score=101.17  Aligned_cols=141  Identities=26%  Similarity=0.362  Sum_probs=114.6

Q ss_pred             HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292          15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G   93 (213)
Q Consensus        15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~   93 (213)
                      ..+..+..+++....++..|.+.+   +.+.++.+.++..+...++..+++++.|+++||+|||+.+..+.....++. .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            344566677778888888999988   789999999999999999999999999999999999999999999999999 8


Q ss_pred             hhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292          94 QTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus        94 ~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                      ..+.++.+.+.+                  ...+..|...+....+.......+|..+++.+++.+.+..+||+.++...
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            888888776655                  11122233333444566777788999999999999999999999988776


Q ss_pred             ccc
Q psy3292         156 MLC  158 (213)
Q Consensus       156 ~~~  158 (213)
                      ++.
T Consensus       161 ~~~  163 (352)
T cd06174         161 ILG  163 (352)
T ss_pred             HHH
Confidence            653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.40  E-value=2.6e-12  Score=106.62  Aligned_cols=142  Identities=13%  Similarity=0.044  Sum_probs=110.3

Q ss_pred             HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292          13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV   92 (213)
Q Consensus        13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~   92 (213)
                      ...+...+..|++.+..++..|.+++   +++.++.+.+++.+.+.++..+++++.|++.||+|||+++..+.+++.++.
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34556678888889999999999999   999999999999999999999999999999999999999999999999988


Q ss_pred             -Hhhh---cCchhHHHH-----------hcC-------CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH--------
Q psy3292          93 -GQTF---GWSSPVLAY-----------LVS-------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC--------  142 (213)
Q Consensus        93 -~~~~---~~~~~~l~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~--------  142 (213)
                       ....   .++++.+.+           ...       ...|...++...+...+..++|..+|+.+.+.+.        
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence             7543   356665544           111       1122223334456677788899999999888774        


Q ss_pred             ------------------hHhccchhhhhhccc
Q psy3292         143 ------------------DRIGRKWTLLSTGML  157 (213)
Q Consensus       143 ------------------~~~g~~~~~~~~~~~  157 (213)
                                        +..+||+.+...+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~  195 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAV  195 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              234688888766655

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.40  E-value=3.8e-13  Score=109.21  Aligned_cols=136  Identities=17%  Similarity=0.126  Sum_probs=105.7

Q ss_pred             HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292          19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~   97 (213)
                      .+.+.++....+...|.+.+   +++.++++.+++.++..++..+++++.|+++||+|||+.+..+.++..++. ...++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            34455667777788899988   899999999999999999999999999999999999999999999999999 88898


Q ss_pred             CchhHHHH------h------------cCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHHhHhccchhhhhhccc
Q psy3292          98 WSSPVLAY------L------------VSPDSPVPMSEDESSWVVASMEFGCWAIP-FFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus        98 ~~~~~l~~------~------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~-~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ++.+.+.+      .            ..+..|...+....+.......+|..+++ .+.+.+.+..|||+.+++.+.+
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII  159 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            88877665      0            01111111122223556666778888888 5677777888999998776655

>PRK15075 citrate-proton symporter; Provisional

Probab=99.39  E-value=6.3e-12  Score=104.97  Aligned_cols=149  Identities=14%  Similarity=0.032  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHH-HHHH-----HHHHhhhhhhhHHhhhhhchh
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWV-VASM-----EFGCWAIPFFAGMLCDRIGRK   78 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~~g~~ig~~~~g~l~d~~Grr   78 (213)
                      +..++.......++.+.+.+|....+...|.+.+   +++.++.+.+.. .+..     .++..+|+++.|+++||+|||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr   86 (434)
T PRK15075         10 RESKARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR   86 (434)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence            3445557888888999999999999999999999   888877765543 3322     223357899999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhhhcCchhH--------HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHH
Q psy3292          79 WTLLSTATLSAFSV-GQTFGWSSPV--------LAY------------------LVSPDSPVPMSEDESSWVVASMEFGC  131 (213)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~~~--------l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~  131 (213)
                      +.++.+.....++. ..+++++++.        +.+                  ...+..|...+....+......++|.
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence            99999999999999 9999988763        122                  12233343444444455555566677


Q ss_pred             HHHHHHHHHHH--------hHhccchhhhhhcc
Q psy3292         132 WAIPFFAGMLC--------DRIGRKWTLLSTGM  156 (213)
Q Consensus       132 ~~g~~~~g~l~--------~~~g~~~~~~~~~~  156 (213)
                      .+++.+++.+.        +.+|||+.+++..+
T Consensus       167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            77777666653        56899999987543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.38  E-value=1.9e-12  Score=105.74  Aligned_cols=129  Identities=17%  Similarity=0.186  Sum_probs=103.1

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA  104 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~  104 (213)
                      .+...|..|.+.+   +++.++++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++. ...+.++++.+.
T Consensus         7 ~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   83 (377)
T PRK11102          7 IDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI   83 (377)
T ss_pred             HHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3445688899988   899999999999999999999999999999999999999999999999999 888888877665


Q ss_pred             H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      +                  ...+..|...+....+.......+|..+++.+++.+.+..|||+.+++...+
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  154 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            5                  1111222222233335556667788999999999999999999998776655

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.37  E-value=3.9e-12  Score=107.19  Aligned_cols=147  Identities=11%  Similarity=-0.047  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292           8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL   87 (213)
Q Consensus         8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~   87 (213)
                      .+.+..+..++.+....|-...+...|.+.+   +++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~  103 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence            5556666777777777788888889999999   9999999999999999999999999999999999999998887777


Q ss_pred             HHHHH-Hhhh-----cCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292          88 SAFSV-GQTF-----GWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus        88 ~~~~~-~~~~-----~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                      ..+.. ..++     +++.+.+.+                  ...+..|...+....+.......+|..+++++..++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~  183 (467)
T PRK09556        104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN  183 (467)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence            66555 4443     577776655                  11112222223333455556667788888887777666


Q ss_pred             Hh---ccchhhhhhccc
Q psy3292         144 RI---GRKWTLLSTGML  157 (213)
Q Consensus       144 ~~---g~~~~~~~~~~~  157 (213)
                      ..   +||..+.+.+++
T Consensus       184 ~~~~~~~~~~f~~~g~~  200 (467)
T PRK09556        184 YFFDGHVIGMFIFPSII  200 (467)
T ss_pred             hhccCcchhHHHHHHHH
Confidence            54   577776665554

>PRK10054 putative transporter; Provisional

Probab=99.36  E-value=1e-11  Score=102.56  Aligned_cols=128  Identities=14%  Similarity=0.103  Sum_probs=97.3

Q ss_pred             cccchhhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292          26 FGWSSPVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL  103 (213)
Q Consensus        26 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l  103 (213)
                      .+...+..| .+.+   +++.++.+.++..+.+.++..+++++.|+++||+|||+++.++.+...++. ...+.++++.+
T Consensus        23 ~~~~~~~l~~~l~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (395)
T PRK10054         23 RGATLPFMTIYLSR---QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV   99 (395)
T ss_pred             HHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            444455554 4456   789999999999999999999999999999999999999999999888888 88888887655


Q ss_pred             HH---h---------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         104 AY---L---------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       104 ~~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..   .               ..+..|...+....+...+..++|..+|+++++.+.+ .||+..+...++.
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054        100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence            43   0               0111111122223356667788999999999998875 7999988876655

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.35  E-value=9.9e-12  Score=101.00  Aligned_cols=125  Identities=16%  Similarity=0.157  Sum_probs=93.5

Q ss_pred             cccchhhhhh-hhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-chhH
Q psy3292          26 FGWSSPVLAY-LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-SSPV  102 (213)
Q Consensus        26 ~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-~~~~  102 (213)
                      ....++..|. +.+   +++.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++. ...+++ +++.
T Consensus        17 ~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~   93 (366)
T TIGR00886        17 WFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV   93 (366)
T ss_pred             HHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4455777885 777   899999999999999999999999999999999999999999999999999 888888 8777


Q ss_pred             HHH------hc-----------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH----------hccchhhhh
Q psy3292         103 LAY------LV-----------SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----------IGRKWTLLS  153 (213)
Q Consensus       103 l~~------~~-----------~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~----------~g~~~~~~~  153 (213)
                      +.+      ..           .+..|...+....+...+..++|..+++.+++.+.+.          .+||+.+++
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886        94 LLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            655      11           1111111122222444445567888888877776653          389998843

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.35  E-value=5.7e-12  Score=103.68  Aligned_cols=126  Identities=14%  Similarity=0.069  Sum_probs=98.8

Q ss_pred             chhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--
Q psy3292          29 SSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--  105 (213)
Q Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--  105 (213)
                      ..+..|.+.+   +++.++.+.++..+.+.++..+++++.|+++||+|||+.+..+..+..++. ...++++.+.+.+  
T Consensus        22 ~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~   98 (392)
T PRK10473         22 YLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGR   98 (392)
T ss_pred             HhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3467899888   899999999999999999999999999999999999999999999999998 8888887765544  


Q ss_pred             ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                      ...+..|...+....+.......+|..+++.+++.+.+..|||+.+++....
T Consensus        99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~  166 (392)
T PRK10473         99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAM  166 (392)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHH
Confidence                            1111112222222335555666778888999999888889999998877665

>PRK10133 L-fucose transporter; Provisional

Probab=99.34  E-value=1.2e-11  Score=103.43  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292           9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS   88 (213)
Q Consensus         9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~   88 (213)
                      ........+..+..+++....++..|.+++   +++.++.+.++..+.+.++..+++++.|++.||+|||+++..+..++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            334455556678888888888999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHH-Hh---hhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy3292          89 AFSV-GQ---TFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC  142 (213)
Q Consensus        89 ~~~~-~~---~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~  142 (213)
                      .++. ..   .++++++.+.+                  ...+..+...++...+.....+.+|..+|+.+++.+.
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998 64   46788877655                  1111111111122235667778889999988877654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.34  E-value=2.4e-11  Score=102.73  Aligned_cols=137  Identities=12%  Similarity=0.081  Sum_probs=98.4

Q ss_pred             HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292          19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~   97 (213)
                      .+...++....++..|.+.+   +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.+...++. ..+++
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  121 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            33333444455677889988   899999999999999999999999999999999999999999998888888 88888


Q ss_pred             CchhHHHH------h-c----------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh---------Hhccchhh
Q psy3292          98 WSSPVLAY------L-V----------SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD---------RIGRKWTL  151 (213)
Q Consensus        98 ~~~~~l~~------~-~----------~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~---------~~g~~~~~  151 (213)
                      ++.+.+.+      + .          .+..|...+....+...+..++|..+++.+.+.+.+         ..|||+.+
T Consensus       122 ~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f  201 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF  201 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence            88877654      0 0          111111222223344444456777777666655432         25899999


Q ss_pred             hhhcccc
Q psy3292         152 LSTGMLC  158 (213)
Q Consensus       152 ~~~~~~~  158 (213)
                      ++.++++
T Consensus       202 ~i~g~l~  208 (476)
T PLN00028        202 FVPGLLH  208 (476)
T ss_pred             HHHHHHH
Confidence            8877663

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.33  E-value=2.1e-11  Score=100.13  Aligned_cols=129  Identities=9%  Similarity=-0.017  Sum_probs=102.4

Q ss_pred             HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292          15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G   93 (213)
Q Consensus        15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~   93 (213)
                      ..++.+..+.+.+..++..|.+.+   +++.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++. .
T Consensus        11 ~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633         11 LLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335666777888999999999999   889999999999999999999999999999999999999999999999999 8


Q ss_pred             hhhcCchhHHHH----------h--------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292          94 QTFGWSSPVLAY----------L--------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus        94 ~~~~~~~~~l~~----------~--------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                      ..+++|++.+.+          .        .....+...+....+......++|..+|+.+++.+.+...
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  158 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM  158 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            888888877665          0        0111122222333355666678888888888888876543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.32  E-value=1.5e-11  Score=101.45  Aligned_cols=139  Identities=22%  Similarity=0.183  Sum_probs=103.7

Q ss_pred             HHHHHHhhcccccchhhhhhhhCCCCCCCCChhh-----HHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292          16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDE-----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF   90 (213)
Q Consensus        16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~   90 (213)
                      .++.+..++..+...+.+|.+.+   +++.++.+     .+++.+.+.++..+++++.|+++||+|||+.+..+.....+
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            34455566667777888898888   67777544     48889999999999999999999999999999999988888


Q ss_pred             HH-HhhhcCchhHHHH------hcC-----------CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhh
Q psy3292          91 SV-GQTFGWSSPVLAY------LVS-----------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL  152 (213)
Q Consensus        91 ~~-~~~~~~~~~~l~~------~~~-----------~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~  152 (213)
                      +. ...+.++++.+.+      ...           ...+...+....+.......+|..+++.+++.+.+..|||+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  176 (408)
T PRK09874         97 VMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF  176 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            88 8888888776654      111           11111112222344555667888899999999999999999988


Q ss_pred             hhccc
Q psy3292         153 STGML  157 (213)
Q Consensus       153 ~~~~~  157 (213)
                      +..+.
T Consensus       177 ~~~~~  181 (408)
T PRK09874        177 ITASV  181 (408)
T ss_pred             HHHHH
Confidence            77665

>KOG1330|consensus

Probab=99.32  E-value=4e-13  Score=109.50  Aligned_cols=152  Identities=14%  Similarity=0.078  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      .+..+....+.++.+..+-+|...+....+..++   .+++++++.|++...+.++..+.+++.|+++||+.||+++..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG  104 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG  104 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence            4455667777888889999999998888888888   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH----------hcCCCCCC----CCCcchh----hHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY----------LVSPDSPV----PMSEDES----SWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~----------~~~~~~~~----~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      ..+..+.. ..++++.+|++.+          ...+..|.    ...+.++    +++......|..+|-++++.+++..
T Consensus       105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            99999999 9999988888877          11111111    2233334    4444445566667777777777776


Q ss_pred             c-cchhhhhhcccch
Q psy3292         146 G-RKWTLLSTGMLCD  159 (213)
Q Consensus       146 g-~~~~~~~~~~~~~  159 (213)
                      + |||.++..++..+
T Consensus       185 ~~Wr~af~~~avl~v  199 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGV  199 (493)
T ss_pred             cceEEEEEeehHHHH
Confidence            6 9999999988854

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.31  E-value=2.1e-11  Score=100.55  Aligned_cols=138  Identities=16%  Similarity=-0.029  Sum_probs=97.5

Q ss_pred             HHHHHhhcccccchhhhhh-hhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292          17 LSAFSVGQTFGWSSPVLAY-LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ   94 (213)
Q Consensus        17 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~   94 (213)
                      +..+...++.+...+.+|. +.+   +++.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.+...++. ..
T Consensus        22 ~~~~~~~~~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (399)
T PRK05122         22 MFTFISYLTIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY   98 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence            3344444556667788876 456   788999999999999999999999999999999999999999998877665 44


Q ss_pred             hhc---C-----chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292          95 TFG---W-----SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus        95 ~~~---~-----~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                      .++   +     ++..+.+                  ...+..|...+....+........|..+|+.+++.+.+.+||+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~  178 (399)
T PRK05122         99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA  178 (399)
T ss_pred             HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence            332   2     2223322                  0111222222333345555566778889999999999999999


Q ss_pred             hhhhhhccc
Q psy3292         149 WTLLSTGML  157 (213)
Q Consensus       149 ~~~~~~~~~  157 (213)
                      ..+.+..+.
T Consensus       179 ~~~~~~~~~  187 (399)
T PRK05122        179 GLGLLIMLL  187 (399)
T ss_pred             HHHHHHHHH
Confidence            876654433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.31  E-value=1.4e-11  Score=103.50  Aligned_cols=148  Identities=12%  Similarity=0.032  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292           8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL   87 (213)
Q Consensus         8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~   87 (213)
                      .|.++....+.......+....+...|.+.+   +++.|+++.++..+.+.++..++.++.|+++||+|||++++.+.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   93 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL   93 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence            4544444444433211222334566788888   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HhhhcCchhHHHH----h---cCC-CCCC-------CC---CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292          88 SAFSV-GQTFGWSSPVLAY----L---VSP-DSPV-------PM---SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus        88 ~~~~~-~~~~~~~~~~l~~----~---~~~-~~~~-------~~---~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                      ..++. ..+++++.+.+..    +   ... ..+.       +.   +....+.......+|..+++.+.+.+.+.+|||
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr  173 (455)
T TIGR00892        94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR  173 (455)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence            98888 8888888776542    1   000 0000       11   112224444556778888899999999999999


Q ss_pred             hhhhhhcccc
Q psy3292         149 WTLLSTGMLC  158 (213)
Q Consensus       149 ~~~~~~~~~~  158 (213)
                      +.+++.+++.
T Consensus       174 ~~f~~~~~~~  183 (455)
T TIGR00892       174 GSFLILGGLL  183 (455)
T ss_pred             HHHHHHHHHH
Confidence            9998887763

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.30  E-value=6.6e-11  Score=100.28  Aligned_cols=123  Identities=17%  Similarity=0.208  Sum_probs=95.2

Q ss_pred             hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHH-H-
Q psy3292          30 SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLA-Y-  105 (213)
Q Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~-~-  105 (213)
                      ......+.+   +++.++.+.+++.+.+.....+..++.|+++|| +|||+++.++.+++.++. ...++.+...+. + 
T Consensus        35 ~~l~~yl~~---~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~  111 (489)
T PRK10207         35 GILAVFFVK---QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIA  111 (489)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            334455566   789999999999999998888999999999999 999999999999999999 888776533322 1 


Q ss_pred             -----------------hcCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292         106 -----------------LVSPDSPVPM--SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus       106 -----------------~~~~~~~~~~--~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                                       +..+..|...  ++...+......++|..+|+.+++++.+++|||+.|++..
T Consensus       112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~  180 (489)
T PRK10207        112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG  180 (489)
T ss_pred             HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence                             1111222221  1223466778899999999999999999999999998754

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.30  E-value=3.7e-11  Score=100.89  Aligned_cols=86  Identities=14%  Similarity=0.073  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292           8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL   87 (213)
Q Consensus         8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~   87 (213)
                      +|.+.....+.......+....+...|.+.+   + +.++.+.++..+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            4444444445555555555556677788877   6 89999999999999999999999999999999999999999998


Q ss_pred             HHHHH-Hhhhc
Q psy3292          88 SAFSV-GQTFG   97 (213)
Q Consensus        88 ~~~~~-~~~~~   97 (213)
                      ..++. ..++.
T Consensus       103 ~~i~~~~~~~~  113 (452)
T PRK11273        103 AAAVMLFMGFV  113 (452)
T ss_pred             HHHHHHHHHhh
Confidence            88888 77664

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=3.2e-11  Score=99.20  Aligned_cols=129  Identities=16%  Similarity=0.059  Sum_probs=93.1

Q ss_pred             hhcccccchhhhhh-hhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---h
Q psy3292          22 VGQTFGWSSPVLAY-LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---F   96 (213)
Q Consensus        22 ~g~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~   96 (213)
                      .....+...|.+|. +.+   +++.|+.+.+++.+++.++..+++++.|+++||+|||+.+..+.+...++. ...   .
T Consensus        27 ~~~~~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~  103 (392)
T PRK12382         27 TYMTVGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI  103 (392)
T ss_pred             HHHHHHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc
Confidence            33345666677775 456   789999999999999999999999999999999999999998877665543 221   1


Q ss_pred             -----cCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292          97 -----GWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS  153 (213)
Q Consensus        97 -----~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~  153 (213)
                           .++++.+.+                  ...+..|...+....+........|..+|+.+++.+.+++||+.....
T Consensus       104 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        104 LPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence                 234444333                  111233334444455666667778889999999999999999876544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.29  E-value=1.9e-11  Score=102.90  Aligned_cols=153  Identities=13%  Similarity=0.149  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-------------------CCCCCCCChhhHHHHHHHHHHHHhhhhh
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-------------------PDSPVPMSEDESSWVVASMEFGCWAIPF   66 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~~s~~~~~~~~s~~~~g~~ig~~   66 (213)
                      +.++.+..+..++....-.|....+...+.+.+                   .+.+++.++.+.+++.+.+.++..++++
T Consensus        15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~   94 (465)
T TIGR00894        15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI   94 (465)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence            334555555555555545555555555544433                   0126789999999999999999999999


Q ss_pred             hhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--CchhHHHH------h-cCC-------CCCCCCCcchh----hHHHH
Q psy3292          67 FAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WSSPVLAY------L-VSP-------DSPVPMSEDES----SWVVA  125 (213)
Q Consensus        67 ~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~~~~l~~------~-~~~-------~~~~~~~~~~~----~~~~~  125 (213)
                      +.|+++||+|||+.+..+.++..++. ...++  .+...+.+      . ...       ..+.+.++++.    +....
T Consensus        95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  174 (465)
T TIGR00894        95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS  174 (465)
T ss_pred             chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999998888887 65433  44444433      0 011       11122222333    44555


Q ss_pred             HHHHHHHHHHHHHHHHHhHh-ccchhhhhhcccc
Q psy3292         126 SMEFGCWAIPFFAGMLCDRI-GRKWTLLSTGMLC  158 (213)
Q Consensus       126 ~~~lg~~~g~~~~g~l~~~~-g~~~~~~~~~~~~  158 (213)
                      ...+|..+++++.+++.+.. |||+.+++.++++
T Consensus       175 ~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~  208 (465)
T TIGR00894       175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVG  208 (465)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHH
Confidence            56788888999999999884 9999998877763

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.27  E-value=2.1e-10  Score=97.02  Aligned_cols=138  Identities=12%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             HHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292          20 FSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        20 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~   97 (213)
                      +.+.+.+....+.+|.|.+.+.+++.++.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++. ..+++
T Consensus        20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~   99 (475)
T TIGR00924        20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS   99 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence            3333344444566676644112389999999999999999999999999999999 899999999999999999 88888


Q ss_pred             CchhHHHH------------------hcCCCCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292          98 WSSPVLAY------------------LVSPDSPVP---MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM  156 (213)
Q Consensus        98 ~~~~~l~~------------------~~~~~~~~~---~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~  156 (213)
                      ++.+.+..                  +.....|..   .++...+......++|..+|+.+++++.+.+||++.+...++
T Consensus       100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~  179 (475)
T TIGR00924       100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV  179 (475)
T ss_pred             ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            77655433                  011111111   122234677788899999999999999999999999988664


Q ss_pred             c
Q psy3292         157 L  157 (213)
Q Consensus       157 ~  157 (213)
                      .
T Consensus       180 ~  180 (475)
T TIGR00924       180 G  180 (475)
T ss_pred             H
Confidence            4

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=2.1e-11  Score=98.65  Aligned_cols=172  Identities=15%  Similarity=0.009  Sum_probs=135.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      ++.++.+...+.++...+-+.---.+...|.+.|   +.++|.+|.+.+.+++.+...++-++.|.++||.+.|..+-.+
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            4456777788888888877777777888899999   8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchhHHHH-------hcCCC-----------CCCCCCcchhhHHHHHHHHHHHHHHHHH--HHHHh
Q psy3292          85 ATLSAFSV-GQTFGWSSPVLAY-------LVSPD-----------SPVPMSEDESSWVVASMEFGCWAIPFFA--GMLCD  143 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~l~~-------~~~~~-----------~~~~~~~~~~~~~~~~~~lg~~~g~~~~--g~l~~  143 (213)
                      .++..+.+ .++++++...+.+       +++.-           .+...+....+...+.-++|+.+.+++.  +++.+
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            99999999 9999998877665       22222           2223344444667777889999988888  99999


Q ss_pred             HhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3292         144 RIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS  185 (213)
Q Consensus       144 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~  185 (213)
                      +.+||..|+..+++++.      +..+..+...++|.=.|+.
T Consensus       181 ~~~w~~~f~~pgiiaii------val~~~~~~rd~Pqs~GLP  216 (448)
T COG2271         181 HGGWRAAFYFPGIIAII------VALILLFLLRDRPQSEGLP  216 (448)
T ss_pred             ccchhHHHHHHHHHHHH------HHHHHHHHhCCCccccCCC
Confidence            99999999998888542      1112233336677666554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=1.4e-10  Score=96.93  Aligned_cols=146  Identities=13%  Similarity=-0.018  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292           9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS   88 (213)
Q Consensus         9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~   88 (213)
                      +.......+.......+........|.+++    .+.++++.++..+++.++..+++++.|+++||+|||+.+..+.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            444444555555555556656666787765    4899999999999999999999999999999999999999988888


Q ss_pred             HHHH-Hhhhc----CchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hH
Q psy3292          89 AFSV-GQTFG----WSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC-DR  144 (213)
Q Consensus        89 ~~~~-~~~~~----~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~-~~  144 (213)
                      .++. ...+.    ++...+.+                  ...+..|...+....+.......+|..+++.+.+... +.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            8887 66554    23333322                  0111223333334445555566677777777666544 45


Q ss_pred             hccchhhhhhcccc
Q psy3292         145 IGRKWTLLSTGMLC  158 (213)
Q Consensus       145 ~g~~~~~~~~~~~~  158 (213)
                      .|||..+++.++++
T Consensus       182 ~~w~~~f~~~~~~~  195 (438)
T TIGR00712       182 NDWHAALYFPAICA  195 (438)
T ss_pred             hhhHHHHHHHHHHH
Confidence            79999998877663

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0252|consensus

Probab=99.23  E-value=2e-11  Score=99.63  Aligned_cols=94  Identities=18%  Similarity=0.039  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-----CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292           4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-----PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK   78 (213)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr   78 (213)
                      ..|+......++..+.|.++||...++.+.|.+..     .+..-+.++...+.+.++.++|..+|+++.|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            37888999999999999999999999998876654     2222346778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-Hhhhc
Q psy3292          79 WTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~~   97 (213)
                      +++...+++++++. +++++
T Consensus       115 ~vYG~~liImIi~t~~~~~s  134 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLS  134 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccC
Confidence            99999999988888 76654

>KOG2615|consensus

Probab=99.23  E-value=2.6e-11  Score=96.86  Aligned_cols=100  Identities=20%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----------------
Q psy3292          44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----------------  105 (213)
Q Consensus        44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----------------  105 (213)
                      +.+....|.+.+.+.+...+.++.+|.++||+|||++++++++...++. +.+.+.|+..+..                 
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rA  143 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRA  143 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHH
Confidence            3567788999999999999999999999999999999999999999999 9999999933322                 


Q ss_pred             hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292         106 LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                      ..++..++..+....+.+...+++|..+||.++|++++
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            34445455555556677888899999999999999998

>PTZ00207 hypothetical protein; Provisional

Probab=99.20  E-value=1.6e-10  Score=99.09  Aligned_cols=183  Identities=7%  Similarity=-0.031  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA   85 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~   85 (213)
                      .++|.......+.....|..+++ +...|.+++   +++.+..+.+++.++. .....++++.|++.||+|||+++.++.
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~y~f-sv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~   98 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFMYAF-NLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSM   98 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34454444444444444444433 245577788   8999999999988763 334567778999999999999999999


Q ss_pred             HHHHHHH-Hhhhc------CchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHH
Q psy3292          86 TLSAFSV-GQTFG------WSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWA-IPFFAG  139 (213)
Q Consensus        86 ~~~~~~~-~~~~~------~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~~~g  139 (213)
                      +++.++. ..+++      .+.+.+.+                  ......| ..+....+...+...+|.++ +++..+
T Consensus        99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~  177 (591)
T PTZ00207         99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA  177 (591)
T ss_pred             HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 88876      46665544                  1111122 12233335555556666653 444444


Q ss_pred             HHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhccc
Q psy3292         140 MLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEG  204 (213)
Q Consensus       140 ~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~  204 (213)
                      ++.+  +|++.+++.++.++    .+.+.......+|+.+++. ..++   +.+++++.+++.++
T Consensus       178 l~~~--~~~~~fl~l~vl~~----vv~ll~~~~vr~p~~~~~~-~~~~---~~~~~~~~~~~~~~  232 (591)
T PTZ00207        178 FFSD--NTSAYFFFLMSFAL----VVGILAIVFMRLPPFHLTG-YQEK---HLDEEEKAQRLMRK  232 (591)
T ss_pred             HHHH--hHHHHHHHHHHHHH----HHHHHHHhheeCCcchhhc-cccc---CCCHHHHHHHhhhh
Confidence            4443  46666665555532    1222233344457777775 5555   44555555555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.19  E-value=4.5e-10  Score=92.96  Aligned_cols=127  Identities=13%  Similarity=0.076  Sum_probs=99.4

Q ss_pred             ccchhhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292          27 GWSSPVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA  104 (213)
Q Consensus        27 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~  104 (213)
                      ....+..| .+.+   +.+.++.+.+...+...++..+.+++.|+++||+|||+.+..+.....++. ...+.++.+.+.
T Consensus        27 ~~~~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~  103 (400)
T PRK11646         27 FVVFPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLW  103 (400)
T ss_pred             HHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            33345554 4556   788999999999999999999999999999999999999999999999999 888888877665


Q ss_pred             H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      +                  ...+..|........+......++|..+|+.+++++. .+|||+.+++.++.
T Consensus       104 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646        104 LSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            5                  1111222223333446677778999999999999999 77999998877655

>TIGR00896 CynX cyanate transporter

Probab=99.15  E-value=5.4e-10  Score=90.75  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=92.3

Q ss_pred             ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH
Q psy3292          27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY  105 (213)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~  105 (213)
                      ...++.+|.+.+   +++.++++.++..+.+.++..+++++.|+++||+|||+.+.++.....++. .. ..++.+.+.+
T Consensus        17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            456788999999   999999999999999999999999999999999999999999998888777 65 6666665543


Q ss_pred             ----------hcCCCC----CCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhHhc--cchhhhhhcc
Q psy3292         106 ----------LVSPDS----PVPMSE---DESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTGM  156 (213)
Q Consensus       106 ----------~~~~~~----~~~~~~---~~~~~~~~~~~lg~~~g~~~~g~l~~~~g--~~~~~~~~~~  156 (213)
                                ......    +....+   ...+.......+|..+++.+.+.+.+..+  ||+.+.....
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~  162 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWAL  162 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence                      101111    111111   12244445566788888888888887653  7777655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.15  E-value=3.6e-10  Score=92.21  Aligned_cols=81  Identities=16%  Similarity=-0.043  Sum_probs=57.8

Q ss_pred             HHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHH-----HHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292          20 FSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVAS-----MEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G   93 (213)
Q Consensus        20 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~-----~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~   93 (213)
                      +.+.+|....+...+.+.+ +...+.++++.+...+.     ..++..+++++.|+++||+|||+++..+.++..++. .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFH-TFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             chhHHHHHHHHHHHHHHHH-HhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3455666666666666665 11223445555554443     233445789999999999999999999999999999 8


Q ss_pred             hhhcCchh
Q psy3292          94 QTFGWSSP  101 (213)
Q Consensus        94 ~~~~~~~~  101 (213)
                      ..+++++.
T Consensus        82 ~~~~~~~~   89 (394)
T TIGR00883        82 IGLLPSYA   89 (394)
T ss_pred             HhhCCChh
Confidence            88888865

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.13  E-value=7e-10  Score=94.95  Aligned_cols=128  Identities=16%  Similarity=0.232  Sum_probs=89.5

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA  104 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~  104 (213)
                      ....+..++.+..   |++.+ +...|+.....++..++.++.|.++|.+|||+.++.+.++..++. +.+.++|...+.
T Consensus        60 ~~~~a~~l~~I~~---diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~i  135 (599)
T PF06609_consen   60 LVLPASILPYINA---DIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFI  135 (599)
T ss_pred             HhccHHHHHHHHH---hcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHH
Confidence            4444566677777   77754 778899999999999999999999999999999999999999999 999999988887


Q ss_pred             H-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .                 ..++..|...+...........-.....++.++..+...-+|||.+++..+.
T Consensus       136 ag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~  205 (599)
T PF06609_consen  136 AGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIW  205 (599)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHH
Confidence            6                 1223333222211111111111122223455554555556899999888776

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.12  E-value=2.3e-09  Score=90.44  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             hhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH-HhhhcCc-hhHHHH-
Q psy3292          31 PVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV-GQTFGWS-SPVLAY-  105 (213)
Q Consensus        31 ~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~-~~~~~~~-~~~l~~-  105 (213)
                      ..+|.+ .+   +++.++.+.+.+.+.+.....+++++.|+++||+ |||+++.++.++..++. ......+ ...+.. 
T Consensus        30 ~~L~~yL~~---~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~  106 (493)
T PRK15462         30 ALLILYLTN---QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLS  106 (493)
T ss_pred             HHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            445555 44   5789999999999999999999999999999999 99999999999988887 6654321 111111 


Q ss_pred             -----------------hcCCCCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292         106 -----------------LVSPDSPVP--MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM  156 (213)
Q Consensus       106 -----------------~~~~~~~~~--~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~  156 (213)
                                       +..+..|..  .++...+......++|..++|++.+++.+.+||++.|...++
T Consensus       107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence                             111222221  233345777778889999999999999999999999987554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.09  E-value=3.8e-10  Score=93.15  Aligned_cols=117  Identities=11%  Similarity=0.103  Sum_probs=84.0

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ...+...+   +++.++.+.+++.+.+.++..+..++.|+++||+|||+++..+..+..++. ...++.+......    
T Consensus        24 ~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  100 (393)
T PRK11195         24 FAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYGLVGI  100 (393)
T ss_pred             HHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455   678889999999999999999999999999999999999999999988877 6666555422211    


Q ss_pred             -----------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292         106 -----------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL  151 (213)
Q Consensus       106 -----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~  151 (213)
                                 ...+..|........+.......+|..+||.++|++.+.. ++..+
T Consensus       101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~  156 (393)
T PRK11195        101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAAL  156 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                       1112222222223335666667888999999999999863 44443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.09  E-value=3.4e-09  Score=90.22  Aligned_cols=124  Identities=17%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             hhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCc-hhHHHH-
Q psy3292          31 PVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWS-SPVLAY-  105 (213)
Q Consensus        31 ~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~-~~~l~~-  105 (213)
                      ...+ .+.+   +++.++.+.++..+.+.......+++.|+++|| +|||+++..+.++..++. ...++++ .+.+.. 
T Consensus        42 ~~l~~yl~~---~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~  118 (500)
T PRK09584         42 GIMAVYLVK---QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMG  118 (500)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            3444 4456   788999999888888776666667899999999 599999999999999998 8777643 332222 


Q ss_pred             -----h------------cCCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -----L------------VSPDSPVPMS--EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -----~------------~~~~~~~~~~--~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                           .            ..+..|....  +...+......++|..+|+.+.+++.|.+|||+.|.+..+.
T Consensus       119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~  189 (500)
T PRK09584        119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG  189 (500)
T ss_pred             HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence                 0            0111111111  11235556778999999999999999999999999876644

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.08  E-value=7.5e-10  Score=91.33  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             HHhhcccccchhhhhh-hhCCCCCCCCChhhHHHHHHHH-HHHHhhhhhhhHHhhhhhchhHHHH-HHHHHHHHHH-Hhh
Q psy3292          20 FSVGQTFGWSSPVLAY-LVSPDSPVPMSEDESSWVVASM-EFGCWAIPFFAGMLCDRIGRKWTLL-STATLSAFSV-GQT   95 (213)
Q Consensus        20 ~~~g~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~-~~g~~ig~~~~g~l~d~~Grr~~~~-~~~~~~~~~~-~~~   95 (213)
                      +..+...+...|.+|. +.+   +++.++++.++..+.. ..+...++++.++ .||+|||+.++ .+.+...+.. ...
T Consensus        25 ~~~~~~~~~~~p~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~  100 (393)
T PRK15011         25 FLTGIAGALQTPTLSIFLTD---EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA  100 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence            3333444545666655 456   7899999999997765 5566677766666 99999998755 4455555666 777


Q ss_pred             hcCchhHHHH-------hcCC-------CCCCC--CCcchh----hHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292          96 FGWSSPVLAY-------LVSP-------DSPVP--MSEDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus        96 ~~~~~~~l~~-------~~~~-------~~~~~--~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                      ++++++.+.+       ....       ..+.+  .++...    +......++|..+|+++++.+.+++|||..++..+
T Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence            8888876543       0000       00111  111122    34455678999999999999999999999988776


Q ss_pred             cc
Q psy3292         156 ML  157 (213)
Q Consensus       156 ~~  157 (213)
                      +.
T Consensus       181 ~~  182 (393)
T PRK15011        181 VA  182 (393)
T ss_pred             HH
Confidence            65

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.08  E-value=1.1e-09  Score=90.96  Aligned_cols=115  Identities=23%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----------------
Q psy3292          43 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----------------  105 (213)
Q Consensus        43 ~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----------------  105 (213)
                      .+.+..+.+.+.++..++..++.++.|++.||+|||+.+..+.++..++. ...+.++.+.+..                
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999888888888 7777777665433                


Q ss_pred             --hcCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 --LVSPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 --~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                        ...+..|...+....+. ......+|..+++.+.|++.|.+|++..+...+++
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~  391 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI  391 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence              01112232222222222 34456789999999999999999999988876655

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.07  E-value=4.3e-10  Score=93.35  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=94.3

Q ss_pred             ccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh-----hcC
Q psy3292          25 TFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT-----FGW   98 (213)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~-----~~~   98 (213)
                      ..+...+..|.+.+   +.+.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++. ...     ..+
T Consensus        32 ~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  108 (417)
T PRK10489         32 GLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP  108 (417)
T ss_pred             HHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC
Confidence            34555677788877   677899999999999999999999999999999999999888777666655 332     134


Q ss_pred             chhHHHH--------------hcCCCCCCCCCcch----hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292          99 SSPVLAY--------------LVSPDSPVPMSEDE----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus        99 ~~~~l~~--------------~~~~~~~~~~~~~~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      +++.+.+              ......+....+++    .+......++|..+|+.+++.+.+..||++.+.+..+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~  185 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG  185 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5554433              01111222222222    24555567889999999999999999999998776655

>TIGR00897 2A0118 polyol permease family

Probab=99.05  E-value=2.2e-09  Score=88.80  Aligned_cols=121  Identities=15%  Similarity=0.186  Sum_probs=84.8

Q ss_pred             hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---hc-CchhHHH
Q psy3292          30 SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---FG-WSSPVLA  104 (213)
Q Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~~-~~~~~l~  104 (213)
                      .+..+.+.+   +++.|+++.++..+.+.++..+++++.|++.||+|||+.+..+..+..++. ...   .. ++.+.+.
T Consensus        33 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  109 (402)
T TIGR00897        33 QGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLIL  109 (402)
T ss_pred             HHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence            344555556   788999999999999999999999999999999999999999999888876 542   32 3454443


Q ss_pred             H---h---------------cCCCCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHHHhHhccchhhhh
Q psy3292         105 Y---L---------------VSPDSPVPMSEDESSWVVASMEFGC-WAIPFFAGMLCDRIGRKWTLLS  153 (213)
Q Consensus       105 ~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~-~~g~~~~g~l~~~~g~~~~~~~  153 (213)
                      .   .               ..+..|...+....+...+..++|. .+|+.+++++.+.+|++..++.
T Consensus       110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            3   0               0011122222223355555566775 5788888888888887665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.05  E-value=6.5e-10  Score=91.37  Aligned_cols=136  Identities=13%  Similarity=0.025  Sum_probs=96.8

Q ss_pred             HHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHH-HHH--H
Q psy3292          17 LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSA-FSV--G   93 (213)
Q Consensus        17 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~-~~~--~   93 (213)
                      +..+.+.+..+...|.+|.+.+   +++.|+.+.++..+.+.+...+++++.|+++||+||+........... +..  .
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~   87 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF   87 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            4455555667788899999998   899999999999999999999999999999999998544322222111 111  2


Q ss_pred             hhhcCchhHHHH-------hcCCCCCC---------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292          94 QTFGWSSPVLAY-------LVSPDSPV---------PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus        94 ~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                      ...+++++.+.+       ......|.         ..+....+......++|..+|+++++.+.+++|||..+....
T Consensus        88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~  165 (382)
T TIGR00902        88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT  165 (382)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            335566666544       11111111         112334577888889999999999999999999999876543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.04  E-value=4.6e-09  Score=85.18  Aligned_cols=146  Identities=18%  Similarity=0.089  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      .++.......+....|..-   ...+++.+.+.+   |+++|++|.+++.+...+...+..++.|++.||+|.|++..++
T Consensus        12 ~~~~L~~S~~af~v~F~VW---~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s   85 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVW---TLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS   85 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHH---HHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH
Confidence            3444444444444444432   334566677777   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCchh---HHHH-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292          85 ATLSAFSV-GQTFGWSSP---VLAY-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~---~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                      .++..+-. ..+++.+.+   .+++                 ..+...|+.......+... ..++|..+.++++..++.
T Consensus        86 ~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~  164 (417)
T COG2223          86 MLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence            99998888 887776555   6555                 1222233333333444454 678899999999999999


Q ss_pred             Hhc---cchhhhhhccc
Q psy3292         144 RIG---RKWTLLSTGML  157 (213)
Q Consensus       144 ~~g---~~~~~~~~~~~  157 (213)
                      ..|   |+.+..+-.+.
T Consensus       165 ~~g~~~w~~~~~i~~~~  181 (417)
T COG2223         165 AFGFLAWRNVAGIYVVA  181 (417)
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            999   88776655444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.03  E-value=1.1e-09  Score=90.03  Aligned_cols=134  Identities=12%  Similarity=-0.033  Sum_probs=93.6

Q ss_pred             HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh----HHHHHHHHHHHHHH-H
Q psy3292          19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK----WTLLSTATLSAFSV-G   93 (213)
Q Consensus        19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr----~~~~~~~~~~~~~~-~   93 (213)
                      .+.+....+...|.+|.+.+   +++.|+++.++..+++.++..+++++.|++.||+|||    +.+.+...  .... .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~--~~~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL--LFAVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH--HHHHHH
Confidence            34444556777888999988   8899999999999999999999999999999999984    22222211  1122 3


Q ss_pred             hhhcCchhHHHH-------hcCCCCCC---------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292          94 QTFGWSSPVLAY-------LVSPDSPV---------PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus        94 ~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ....++.+.+.+       ......|.         ..++...+......++|..+|+.+++++.+++|||..++..+..
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~  167 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG  167 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            334566666544       01111111         11223346677777899999999999999999999988765543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.00  E-value=4.2e-09  Score=85.41  Aligned_cols=123  Identities=19%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhH--HHH---
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPV--LAY---  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~--l~~---  105 (213)
                      ..+.+.+   +++.++++.+...+...++..+++++.|++.||+|||+.+..+..+..++. ...+.++...  +..   
T Consensus       227 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       227 LYKPYGQ---SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            3444555   677888899999999999999999999999999999999998888888877 6666553221  111   


Q ss_pred             ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                     ...+..|...+....+.......+|..+++++.|.+.|..||+..+.+.+++
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~  370 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAF  370 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Confidence                           0111122223333446677778899999999999999999999988776655

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.00  E-value=7.8e-09  Score=86.00  Aligned_cols=121  Identities=13%  Similarity=0.100  Sum_probs=96.3

Q ss_pred             hhhhhhhhCCCCCCCCChhh-HHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--
Q psy3292          30 SPVLAYLVSPDSPVPMSEDE-SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--  105 (213)
Q Consensus        30 ~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--  105 (213)
                      +...|.+.+   ++++|+++ .+.+.+++..+.++..++.|.++||+|.|+++.++.+...+.. +..++++...+.+  
T Consensus        46 s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        46 SFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             HHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455688888   99999999 9999999999999999999999999999999999999999999 9999988777766  


Q ss_pred             ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhh
Q psy3292         106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST  154 (213)
Q Consensus       106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~  154 (213)
                                     ......|...+....+...+...+|..++++++++ ...+|||+-..+.
T Consensus       123 ~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln  185 (511)
T TIGR00806       123 VFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Confidence                           11122333333344466677778888888888888 5567998765443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.98  E-value=7.1e-10  Score=96.74  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             HHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292          16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ   94 (213)
Q Consensus        16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~   94 (213)
                      .+..+..+.+.+..++.++.+.+   +++++.++.|++.+.+.++.+++.++.+++.||+|||+.+.++.+++.++. +.
T Consensus        39 ~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        39 TCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            34556666777888899999988   899999999999999999999999999999999999999999999999998 77


Q ss_pred             hhc
Q psy3292          95 TFG   97 (213)
Q Consensus        95 ~~~   97 (213)
                      ++.
T Consensus       116 alp  118 (633)
T TIGR00805       116 SLP  118 (633)
T ss_pred             hCh
Confidence            654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.98  E-value=3.8e-09  Score=85.29  Aligned_cols=130  Identities=16%  Similarity=0.050  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHH
Q psy3292          12 GMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFS   91 (213)
Q Consensus        12 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~   91 (213)
                      .+....-.+.+|+......+.+|++++   -++++..|.+.+..++..|..+++++.|.+.+|+|+|+.++.+..++.++
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344445567788888888899999999   99999999999999999999999999999999999999999999999999


Q ss_pred             H-Hhh---hcCchhHHHH-----------hcCCCCCC-------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292          92 V-GQT---FGWSSPVLAY-----------LVSPDSPV-------PMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus        92 ~-~~~---~~~~~~~l~~-----------~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                      + +..   ...++..+++           +....+|.       ...........+.+.+|..+||++++++.+.
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            9 764   5556665554           22333332       1112234677888999999999999999873

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.97  E-value=3.2e-09  Score=87.85  Aligned_cols=135  Identities=22%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-----chhH-HHHHHHHHHHHH
Q psy3292          18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-----GRKW-TLLSTATLSAFS   91 (213)
Q Consensus        18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-----Grr~-~~~~~~~~~~~~   91 (213)
                      -.+.+|...+.....+|.+.+   +.+.|.++.+++..+...  .+..+++|+++||+     |||| .+..+.....+.
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            466788888899999999988   889999999999777776  69999999999999     8876 577767777666


Q ss_pred             H-HhhhcC---chhHHHH-------hc-------CCCCCCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHhH-hccc
Q psy3292          92 V-GQTFGW---SSPVLAY-------LV-------SPDSPVPMSEDES----SWVVASMEFGCWAIPFFAGMLCDR-IGRK  148 (213)
Q Consensus        92 ~-~~~~~~---~~~~l~~-------~~-------~~~~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~-~g~~  148 (213)
                      . ...+.+   +.+.+..       ..       ....+...++++.    +.....+.+|..+++.+.+.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            6 666653   2333322       00       0001112233333    344445677777777777778885 5999


Q ss_pred             hhhhhhccc
Q psy3292         149 WTLLSTGML  157 (213)
Q Consensus       149 ~~~~~~~~~  157 (213)
                      ..+++.++.
T Consensus       162 ~~f~i~a~~  170 (402)
T PRK11902        162 NTYLLMAGL  170 (402)
T ss_pred             HHHHHHHHH
Confidence            999887765

>KOG2532|consensus

Probab=98.97  E-value=1.3e-09  Score=91.48  Aligned_cols=120  Identities=17%  Similarity=0.209  Sum_probs=93.4

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchh--HHHH------------
Q psy3292          41 SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSP--VLAY------------  105 (213)
Q Consensus        41 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~--~l~~------------  105 (213)
                      .+++.++++.+++.++++.|.++++++.|++.||+|-|+++..+.++..+.. +.-.+.+..  .+.+            
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            4688999999999999999999999999999999999999999999998888 766554433  2222            


Q ss_pred             ------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH-hccchhhhhhcccchh
Q psy3292         106 ------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTGMLCDR  160 (213)
Q Consensus       106 ------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~-~g~~~~~~~~~~~~~~  160 (213)
                            +.....|...+....+...+...+|..++.+++|++.+. +||+.++++.+..+++
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i  207 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLI  207 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHH
Confidence                  112222333333333556666778888888899999998 9999999998888653

>PRK03699 putative transporter; Provisional

Probab=98.97  E-value=1.3e-08  Score=83.95  Aligned_cols=123  Identities=13%  Similarity=0.071  Sum_probs=91.4

Q ss_pred             hhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---
Q psy3292          31 PVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---  105 (213)
Q Consensus        31 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---  105 (213)
                      ...|.+. +   .++.++.+.+.+.+.+.++..+|.++.|+++||+|||+.+.....+..+.. .....++...+.+   
T Consensus       226 ~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (394)
T PRK03699        226 SWVPEYAQK---KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL  302 (394)
T ss_pred             HHHHHHHHH---HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4456555 4   568899999999999999999999999999999999999888777766666 6555555433322   


Q ss_pred             ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                     ...+..+ ...+...+.......+|..++|.+.|++.|..|++..++....+
T Consensus       303 ~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~  368 (394)
T PRK03699        303 GLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL  368 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence                           0111112 11233446666777899999999999999999999888777766

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.94  E-value=2.4e-08  Score=82.39  Aligned_cols=122  Identities=11%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             hhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          32 VLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        32 ~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ..|.+ ++   +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+.. .....++.+....    
T Consensus       238 ~~p~~l~~---~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        238 NMPLFIIN---ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45544 44   578888999998888888888999999999999999998877666555555 4444555443321    


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                    ...+..|. ..+...+.......+|..+|+.++|.+.|++||+..+....++
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~  379 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM  379 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                          11222332 2444456666778899999999999999999999888776655

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.93  E-value=2.7e-08  Score=81.72  Aligned_cols=112  Identities=16%  Similarity=0.179  Sum_probs=80.4

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcCchhHHHH--------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGWSSPVLAY--------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~~~~~l~~--------------  105 (213)
                      +.+.++.+.+++.+...++..++.++.|++.||+|||+.+..+.....+..  .....++.+.+..              
T Consensus       268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (405)
T TIGR00891       268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWG  347 (405)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchh
Confidence            578899999999999999999999999999999999999887776653333  3333344332211              


Q ss_pred             ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhh
Q psy3292         106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS  153 (213)
Q Consensus       106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~  153 (213)
                          ...+..|...+....+.......+|..+|+++.|++.|+.| ++..+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence                11222333333444566667778899999999999999999 6655543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.93  E-value=9.8e-09  Score=83.36  Aligned_cols=128  Identities=16%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             ccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-----chhHHH-HHHHHHHHHHH-Hhhhc
Q psy3292          25 TFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-----GRKWTL-LSTATLSAFSV-GQTFG   97 (213)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-----Grr~~~-~~~~~~~~~~~-~~~~~   97 (213)
                      -.+..++..|.+.+   +++.|.++.++.... .+...+ .+++|++.||+     ||||.+ +.+.....+.. ..++.
T Consensus         3 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~   77 (356)
T TIGR00901         3 PLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL   77 (356)
T ss_pred             CchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence            34566778899988   899999999999655 333344 88999999998     898875 55566666665 55565


Q ss_pred             Cchh---HHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc--------cc
Q psy3292          98 WSSP---VLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--------RK  148 (213)
Q Consensus        98 ~~~~---~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g--------~~  148 (213)
                      ++..   .+..                  ...+..|...+....+.......+|..+++.+++.+.+..|        ||
T Consensus        78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr  157 (356)
T TIGR00901        78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG  157 (356)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence            3322   2222                  12222233333334455666678888889999988888888        99


Q ss_pred             hhhhhhccc
Q psy3292         149 WTLLSTGML  157 (213)
Q Consensus       149 ~~~~~~~~~  157 (213)
                      ..+++.++.
T Consensus       158 ~~f~i~ai~  166 (356)
T TIGR00901       158 YIFFWTALL  166 (356)
T ss_pred             HHHHHHHHH
Confidence            999877765

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.93  E-value=1.3e-09  Score=75.96  Aligned_cols=104  Identities=23%  Similarity=0.267  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCC
Q psy3292          54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVP  114 (213)
Q Consensus        54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~  114 (213)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++. .....++.+.+..                  ...+..|..
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            345667888999999999999999999999988888888 7777777665443                  122333434


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         115 MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       115 ~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+....+.......+|..+++.+.+.+.+..||++.+......
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL  126 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence            4444556777778899999999999999999999888776655

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.92  E-value=2.3e-08  Score=80.19  Aligned_cols=130  Identities=22%  Similarity=0.223  Sum_probs=97.3

Q ss_pred             ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH-HHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292          27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW-TLLSTATLSAFSV-GQTFGWSSPVLA  104 (213)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~-~~~~~~~~~~~~~-~~~~~~~~~~l~  104 (213)
                      .......|.+.+  +..+.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++. .....++.+...
T Consensus       192 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  269 (352)
T cd06174         192 YGLLTYLPLYLQ--EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL  269 (352)
T ss_pred             HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            333444555554  033789999999999999999999999999999999999 9999999888888 777777654443


Q ss_pred             H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292         105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC  158 (213)
Q Consensus       105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~  158 (213)
                      .                  ...+..|...+....+.......+|..+++.+.+.+.|..|++..+.+.++++
T Consensus       270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~  341 (352)
T cd06174         270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA  341 (352)
T ss_pred             HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence            3                  11222222223333456666778899999999999999999999988877763

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.91  E-value=1.1e-08  Score=86.94  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=92.1

Q ss_pred             HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-----chhHH-HHHHHHHH
Q psy3292          15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-----GRKWT-LLSTATLS   88 (213)
Q Consensus        15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-----Grr~~-~~~~~~~~   88 (213)
                      ..+..+..|...+..++.+|.+.+   +.+.+.++.+.. +...... ++.+++|+++||+     |||+. +..+.+..
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            334456677778888899999888   778898888886 3333332 6899999999999     99886 55666666


Q ss_pred             HHHH-HhhhcC---chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-Hh
Q psy3292          89 AFSV-GQTFGW---SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD-RI  145 (213)
Q Consensus        89 ~~~~-~~~~~~---~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~-~~  145 (213)
                      .++. ..++.+   +.+.+.+                  ...+..|...+....+.....+.+|..+++.+.+++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5666 665643   3444432                  11122222222222344555567788888888888888 57


Q ss_pred             ccchhhhhhccc
Q psy3292         146 GRKWTLLSTGML  157 (213)
Q Consensus       146 g~~~~~~~~~~~  157 (213)
                      |||..+++.++.
T Consensus       172 GWr~~f~i~a~l  183 (491)
T PRK11010        172 GWQGMYWLMAAL  183 (491)
T ss_pred             CHHHHHHHHHHH
Confidence            999999887766

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.91  E-value=8.3e-09  Score=85.80  Aligned_cols=129  Identities=11%  Similarity=0.052  Sum_probs=84.0

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---hc----
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---FG----   97 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~~----   97 (213)
                      .+...+..|.+.+  ++++.++.+.++..+.+.++..+++++.|+++||+|||+.+.++.....+.. ...   .+    
T Consensus        26 ~~~~~~~~~~~l~--~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (420)
T PRK09528         26 WSSWFSFFPIWLH--DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQ  103 (420)
T ss_pred             HHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566665544  1589999999999999999999999999999999999999887665544333 211   11    


Q ss_pred             CchhH-HHH---hcC----C---CCCCCCC------cchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292          98 WSSPV-LAY---LVS----P---DSPVPMS------EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus        98 ~~~~~-l~~---~~~----~---~~~~~~~------~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+... ...   ...    .   ..+....      ....+......++|..+++++++.+.+. +|+..++..++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~  179 (420)
T PRK09528        104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGS  179 (420)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHH
Confidence            11111 111   000    0   0111111      1122455666788999999999998864 888888776655

>KOG3764|consensus

Probab=98.90  E-value=8.4e-10  Score=88.82  Aligned_cols=147  Identities=17%  Similarity=0.199  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhhcccccchhhhhhhhC--C---------------------------------------------CCCC
Q psy3292          11 AGMSATLSAFSVGQTFGWSSPVLAYLVS--P---------------------------------------------DSPV   43 (213)
Q Consensus        11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~---------------------------------------------~~~~   43 (213)
                      +......+.+.+.+.++.+.|++|.+.+  .                                             +.+.
T Consensus        22 ilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~  101 (464)
T KOG3764|consen   22 ILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISL  101 (464)
T ss_pred             EEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCc
Confidence            3344455667788888888888876654  1                                             1234


Q ss_pred             CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----------------
Q psy3292          44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----------------  105 (213)
Q Consensus        44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----------------  105 (213)
                      +.++++.|++.+...+..++-.++.|++.||+|+|..++++.+++..+. ++++.++++++.+                 
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            4567789999999999999999999999999999999999999999999 9999999998877                 


Q ss_pred             -hcCCCCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -LVSPDSPV-PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -~~~~~~~~-~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                       +.....|. ..+....|..-+...+|..+||..+|.+-|..|.+..|++.+++
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v  235 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIV  235 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHH
Confidence             11111121 22233456677778899999999999999999999999887766

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.88  E-value=3.3e-08  Score=83.80  Aligned_cols=124  Identities=14%  Similarity=0.110  Sum_probs=86.3

Q ss_pred             hhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--CchhHHHH-
Q psy3292          31 PVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WSSPVLAY-  105 (213)
Q Consensus        31 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~~~~l~~-  105 (213)
                      ...|.+. +   +++.++.+.+++.+...++..+++++.|+++||+|||+.+..+..+..+.. .....  .+.+.... 
T Consensus       296 ~~lp~~l~~---~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        296 ALLPTYLKT---DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            4456665 5   678999999999999999999999999999999999999887776655554 33322  22222111 


Q ss_pred             -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                       ...+..|...+....+...+...+|..+|+++.|.+.|++|++..+...+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence                             0111112222233345666677889999999999999999998877554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.88  E-value=5.7e-08  Score=81.41  Aligned_cols=76  Identities=8%  Similarity=-0.045  Sum_probs=63.7

Q ss_pred             cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-----Cchh
Q psy3292          28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-----WSSP  101 (213)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-----~~~~  101 (213)
                      ..+++.+.+.+  .+++.|++|.+++.++..++..++.++.|++.||+|.|+++.++.++..+.. ..+++     ++++
T Consensus        52 ~~~~l~~~~~~--~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~  129 (462)
T PRK15034         52 LFSAVTVNLNK--IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFG  129 (462)
T ss_pred             HHHHHHHHhhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHH
Confidence            34555555532  2689999999999999999999999999999999999999999999998888 87775     6777


Q ss_pred             HHHH
Q psy3292         102 VLAY  105 (213)
Q Consensus       102 ~l~~  105 (213)
                      .+.+
T Consensus       130 ~lli  133 (462)
T PRK15034        130 IFIV  133 (462)
T ss_pred             HHHH
Confidence            7666

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.88  E-value=4.4e-08  Score=82.69  Aligned_cols=125  Identities=13%  Similarity=0.029  Sum_probs=81.5

Q ss_pred             hhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H--hhhcCchhHHHH
Q psy3292          30 SPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G--QTFGWSSPVLAY  105 (213)
Q Consensus        30 ~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~--~~~~~~~~~l~~  105 (213)
                      ....|.+ ++   +++.++.+.++..+...++..++.++.|+++||+|||+..........++. .  .....+.....+
T Consensus       278 ~~~~p~yl~~---~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T PRK09556        278 DNWSPVYAFQ---ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA  354 (467)
T ss_pred             HHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3445654 45   678999999999999999999999999999999999987765544433332 2  222233322211


Q ss_pred             ------------------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHh------------Hhccchhhhhh
Q psy3292         106 ------------------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCD------------RIGRKWTLLST  154 (213)
Q Consensus       106 ------------------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~------------~~g~~~~~~~~  154 (213)
                                        ...+..|........+......++ |..+++.+.|++.|            ..||+..+.+.
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~  434 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL  434 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence                              111222333333344555555565 66888999999999            56788887665


Q ss_pred             ccc
Q psy3292         155 GML  157 (213)
Q Consensus       155 ~~~  157 (213)
                      ...
T Consensus       435 ~~~  437 (467)
T PRK09556        435 DIA  437 (467)
T ss_pred             HHH
Confidence            444

>PRK03545 putative arabinose transporter; Provisional

Probab=98.85  E-value=8.9e-08  Score=78.85  Aligned_cols=120  Identities=12%  Similarity=0.017  Sum_probs=83.7

Q ss_pred             hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcCchhHHHH-----
Q psy3292          33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGWSSPVLAY-----  105 (213)
Q Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~~~~~l~~-----  105 (213)
                      .|.+.+   ..+.++.+.+++.+...++..+++++.|+++||+|||+... +..+.....  .....++.+.+..     
T Consensus       229 ~~~l~~---~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        229 EPFVQQ---VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHH---hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            344555   56788899999999999999999999999999999887544 333333333  3344455443322     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                   ...+..| ..+....+...+...+|..+|++++|++.|++|.+..+.....+
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~  368 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAAL  368 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence                         0111122 12233346677778889999999999999999999988777665

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.3e-07  Score=77.10  Aligned_cols=135  Identities=21%  Similarity=0.219  Sum_probs=102.4

Q ss_pred             HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292          19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~   97 (213)
                      .+.++=.+..++.+-|.+.+   ..+.+++..+++.-++.++..+|.++.|+++|| +.|+.+.....+..+.. ...+.
T Consensus       221 ~l~~~g~F~~ftYi~P~L~~---v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~  296 (394)
T COG2814         221 FLFMTGHFALYTYIRPFLES---VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT  296 (394)
T ss_pred             HHHHcchhhhHHhHHHHHHH---ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence            33344445666677788888   788999999999999999999999999999999 88888888877777777 55544


Q ss_pred             Cchh-HHHH---------------hcCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292          98 WSSP-VLAY---------------LVSPD--SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus        98 ~~~~-~l~~---------------~~~~~--~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+.. ...+               .....  ......+...+...+.+++|..+|..++|.+.|++|.....+..++.
T Consensus       297 ~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l  374 (394)
T COG2814         297 GASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAAL  374 (394)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            4433 3222               01111  11233455568888899999999999999999999999988888777

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.84  E-value=5.4e-08  Score=81.36  Aligned_cols=128  Identities=20%  Similarity=0.150  Sum_probs=89.0

Q ss_pred             ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---h--cC--
Q psy3292          27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---F--GW--   98 (213)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~--~~--   98 (213)
                      .......|.+.+   +.+.++.+.++......++..++.++.|+++||+|||+.+..+..+..++. ...   .  .+  
T Consensus       301 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (481)
T TIGR00879       301 NAIMYYSPTIFE---NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS  377 (481)
T ss_pred             eehHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            334445577776   677888888999999999999999999999999999999988877777666 444   1  11  


Q ss_pred             ----chhHHHH-------h-----------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292          99 ----SSPVLAY-------L-----------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM  156 (213)
Q Consensus        99 ----~~~~l~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~  156 (213)
                          +...+..       .           ..+..|...+....+.......+|..+++.+.+.+.++.|+++.+++.+.
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~  457 (481)
T TIGR00879       378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG  457 (481)
T ss_pred             ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence                1111111       0           01112222223334556666788999999999999999999988877665


Q ss_pred             c
Q psy3292         157 L  157 (213)
Q Consensus       157 ~  157 (213)
                      +
T Consensus       458 ~  458 (481)
T TIGR00879       458 L  458 (481)
T ss_pred             H
Confidence            5

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.83  E-value=9.7e-09  Score=84.72  Aligned_cols=129  Identities=14%  Similarity=0.044  Sum_probs=86.0

Q ss_pred             cccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh---hhcC--
Q psy3292          26 FGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ---TFGW--   98 (213)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~---~~~~--   98 (213)
                      .+...|..|.+ .+   +++.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.....+.. ..   .+++  
T Consensus        18 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (396)
T TIGR00882        18 MSAYFPFFPIWLHD---VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLL   94 (396)
T ss_pred             HHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34445666655 44   578999999999999999999999999999999999999987766554433 21   1121  


Q ss_pred             ---chhHHHH-------hcCCCCC---CCC----Cc--chhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292          99 ---SSPVLAY-------LVSPDSP---VPM----SE--DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC  158 (213)
Q Consensus        99 ---~~~~l~~-------~~~~~~~---~~~----~~--~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~  158 (213)
                         ......+       ......+   .+.    ++  ...+......++|..+|+.+++.+.+ .||+..++..+..+
T Consensus        95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~  172 (396)
T TIGR00882        95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA  172 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence               1111111       0010011   011    11  12356667778999999999998876 59999888776663

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.82  E-value=4.8e-08  Score=90.77  Aligned_cols=101  Identities=9%  Similarity=-0.096  Sum_probs=73.4

Q ss_pred             CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---hcCchhHHHH--------------
Q psy3292          44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---FGWSSPVLAY--------------  105 (213)
Q Consensus        44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~~~~~~~l~~--------------  105 (213)
                      ..+....+++.+++.++..+++++.|+++||+|||++++.+.++..+.. ...   ..++++.+.+              
T Consensus        43 ~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  122 (1146)
T PRK08633         43 SEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSP  122 (1146)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhch
Confidence            3345668999999999999999999999999999999998877655544 332   3455555544              


Q ss_pred             ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292         106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus       106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                          +..+..+........++......+|..+|+++++++.+.
T Consensus       123 ~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        123 AKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                112222333334445777777889999999999999876

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.82  E-value=7.3e-08  Score=79.15  Aligned_cols=124  Identities=14%  Similarity=0.090  Sum_probs=84.3

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchh-HHHH---
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSP-VLAY---  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~-~l~~---  105 (213)
                      ..+|.+.+   +.+.++++.+...+...++..+++++.|++.||+|||+.+..+.....++. ......... ....   
T Consensus       221 ~~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  297 (381)
T PRK03633        221 GLMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34677776   568899999999999999999999999999999999999888777766665 432111110 1111   


Q ss_pred             -----------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -----------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                 ...+..|........+.....+++|..+||.++|++.|.+|+++.+...+.+
T Consensus       298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~  360 (381)
T PRK03633        298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASV  360 (381)
T ss_pred             HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence                       1111111111111123334457899999999999999999998888765555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.81  E-value=1.2e-07  Score=78.26  Aligned_cols=114  Identities=20%  Similarity=0.232  Sum_probs=84.9

Q ss_pred             CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----------------
Q psy3292          44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----------------  105 (213)
Q Consensus        44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----------------  105 (213)
                      +.+..+.+...+...+...++.+..|++.||+|||+.+.++..+..+.. .....++.+.+..                 
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778888888889999999999999999999999999988888887 7677766665433                 


Q ss_pred             -hcCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -LVSPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                       ...+..+........+. ......+|..+++++.|++.|..|++..+.+..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~  383 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI  383 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence             01111122222222223 44677889999999999999999999988887766

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.81  E-value=1.5e-07  Score=77.40  Aligned_cols=121  Identities=13%  Similarity=0.022  Sum_probs=91.6

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----  105 (213)
                      ..|.+.+   +.+.++.+.+.+.+...++..++.++.+++.||+|+|+.+.++.+...+.. ...+.++.+.+..     
T Consensus       227 ~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~  303 (382)
T TIGR00902       227 FSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH  303 (382)
T ss_pred             HHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            4455656   689999999999999999999999999999999999999999999999999 8888888776554     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                   ..... |........+.+. ....+|..+|+.++|++.|++|. ..++..+.+
T Consensus       304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~  367 (382)
T TIGR00902       304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAII  367 (382)
T ss_pred             HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence                         11221 2222222234433 24568899999999999999986 555555544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.80  E-value=1e-07  Score=78.70  Aligned_cols=116  Identities=19%  Similarity=0.106  Sum_probs=86.2

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----  105 (213)
                      ..|.+.+   +.+.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++. ...+.++.+.+..     
T Consensus       242 ~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        242 WLPSLLV---GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHH---hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3567766   678899999999999999999999999999999999999888766666666 5555555443322     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchh
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWT  150 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~  150 (213)
                                   ...+..|...+....+...+...+|..+|+.+.|++.++.+....
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~  376 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVG  376 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHH
Confidence                         122233444445556777778889999999999999987654433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.80  E-value=1.3e-07  Score=78.63  Aligned_cols=124  Identities=14%  Similarity=0.008  Sum_probs=90.6

Q ss_pred             hhhhhhhCCCCC-CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---
Q psy3292          31 PVLAYLVSPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---  105 (213)
Q Consensus        31 ~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---  105 (213)
                      ...|.+.+   + ++.++.+.+++.+...++..++.++.+++.||.++++.+..+..+..++. ...+.++.....+   
T Consensus       244 ~~~p~~~~---~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        244 VLYPALAD---EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HhhHHHHH---hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            34566655   4 78889999999999999999999999999999888888888877777777 7666666544322   


Q ss_pred             ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                     ...+..|...+....+.......+|..+|+.+.|++.|.+|.+..+...+..
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~  387 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG  387 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence                           1111222222333345566667889999999999999999988877665544

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.79  E-value=1.2e-07  Score=77.32  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=83.3

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------------  105 (213)
                      +++.++.+.+++.+...+...++.++.|++.||+|||+.+.++.....+.. ...+.++.+....               
T Consensus       229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  308 (375)
T TIGR00899       229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI  308 (375)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999998888877788889999999999999999888776655555 4445455443322               


Q ss_pred             ---hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ---LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ---~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                         ...+..|.. .....+......++|..+|+.+.|.+.|..|++..+...++.
T Consensus       309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~  362 (375)
T TIGR00899       309 GMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM  362 (375)
T ss_pred             HHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence               111222322 223445666667789999999999999999999888776665

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.79  E-value=1.8e-07  Score=78.62  Aligned_cols=125  Identities=13%  Similarity=0.042  Sum_probs=77.5

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--chhHHHH-HHHHHHHHHH-Hhhh--cCchhHHH
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GRKWTLL-STATLSAFSV-GQTF--GWSSPVLA  104 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Grr~~~~-~~~~~~~~~~-~~~~--~~~~~~l~  104 (213)
                      ...|.+.+  +..+.+..+.++....+.++..++.++.|+++||+  |||+... ....+..++. ....  ..+.....
T Consensus       274 ~~~P~~l~--~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (452)
T PRK11273        274 DWSPTYLK--EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM  351 (452)
T ss_pred             HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence            45566654  03578888899999999999999999999999999  5554322 2222222222 2212  12221111


Q ss_pred             H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWA-IPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      +                  ...+..|........+.......+|..+ |+.+.|++.|+.|++..+.+....
T Consensus       352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~  423 (452)
T PRK11273        352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  423 (452)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence            1                  1112334444444556666666677654 799999999999999888766655

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.79  E-value=1.4e-07  Score=77.94  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=83.0

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh-cCchhHHHH---
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF-GWSSPVLAY---  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~-~~~~~~l~~---  105 (213)
                      ...|.+.+   +++.++.+.+...+.+.++..+|.+..+++.||+|||+.+..+..+..++. .... .++......   
T Consensus       226 ~~lp~~l~---~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  302 (393)
T PRK09705        226 AWLPAFYI---EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVC  302 (393)
T ss_pred             HHHHHHHH---HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            34566666   568899999999999999999999999999999999999888877776666 5443 322221111   


Q ss_pred             -h------------cCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292         106 -L------------VSPDS-PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML  157 (213)
Q Consensus       106 -~------------~~~~~-~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~  157 (213)
                       .            ..... |........+...+...++..+||.+.|++.|..| ++..+.+....
T Consensus       303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~  369 (393)
T PRK09705        303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC  369 (393)
T ss_pred             HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence             0            00000 11111122345556677788889999999999987 44444444433

>KOG2533|consensus

Probab=98.79  E-value=2.2e-08  Score=84.53  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=86.8

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-------hcCCCCC-
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------LVSPDSP-  112 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------~~~~~~~-  112 (213)
                      |.+....+.+.+.+++.++.++|.++.+.+.||+.-.+.+....+...+.. ......|++.+.+       ..+...| 
T Consensus        75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~  154 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPG  154 (495)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchH
Confidence            888999999999999999999999999999999997777777777666666 7777888888777       2222222 


Q ss_pred             ------CCCCcchhhHHHHHH----HHHHHHHHHHHHHHH------hHhccchhhhhhcccch
Q psy3292         113 ------VPMSEDESSWVVASM----EFGCWAIPFFAGMLC------DRIGRKWTLLSTGMLCD  159 (213)
Q Consensus       113 ------~~~~~~~~~~~~~~~----~lg~~~g~~~~g~l~------~~~g~~~~~~~~~~~~~  159 (213)
                            .+.++.+.+...+.+    .+|.++|++++..+.      ...||||.|++.+++.+
T Consensus       155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~  217 (495)
T KOG2533|consen  155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITL  217 (495)
T ss_pred             HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHH
Confidence                  234455555544444    466667766666642      24699999999887743

>PRK12382 putative transporter; Provisional

Probab=98.78  E-value=1.1e-07  Score=78.27  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ...|.+.+   +.+.+  +.+...+.+.++..+++++.|++.||+|||+.+..+..+..++. ...+.++.+....    
T Consensus       237 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        237 TFVSLYFA---SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHH---hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34455544   33443  34556667788889999999999999999999998888888888 7777766554332    


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                    ...+..|...+....+...+...+|..+|+.+.|++.|+.|++..+...+.+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~  377 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS  377 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence                          0011112222223345566667889999999999999999999998877665

>TIGR00889 2A0110 nucleoside transporter

Probab=98.77  E-value=4.2e-08  Score=81.76  Aligned_cols=112  Identities=14%  Similarity=0.142  Sum_probs=78.8

Q ss_pred             ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-ch---hHHHH---------------
Q psy3292          46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-SS---PVLAY---------------  105 (213)
Q Consensus        46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-~~---~~l~~---------------  105 (213)
                      +.++.+...++..++..++.++.|+++||+|||+++..+.++..++. ...... +.   +.+..               
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34677999999999999999999999999999999999999988887 655532 21   22211               


Q ss_pred             ---hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHh------ccchhhhhhccc
Q psy3292         106 ---LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRI------GRKWTLLSTGML  157 (213)
Q Consensus       106 ---~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~------g~~~~~~~~~~~  157 (213)
                         ...+..|...+....+... ....+|..+||+++|++.|+.      ||+..+...+++
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~  390 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY  390 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence               1111122222222335554 346789999999999999985      578887766655

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.76  E-value=2.4e-07  Score=78.75  Aligned_cols=124  Identities=15%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             hhhhhCCCCCCCCChhhHHHHHH-HHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H---hhhc-CchhHHHH-
Q psy3292          33 LAYLVSPDSPVPMSEDESSWVVA-SMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G---QTFG-WSSPVLAY-  105 (213)
Q Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~s-~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~---~~~~-~~~~~l~~-  105 (213)
                      .|.+.+   +.+.++++.++... ...++..+|.++.|+++||+|||+.+.+..++..+.. .   .... ++...+.. 
T Consensus       246 ~~~l~~---~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~  322 (491)
T PRK11010        246 TTFLIR---GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA  322 (491)
T ss_pred             HHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            344455   57899999999875 5568999999999999999999888776655444433 2   2232 23322111 


Q ss_pred             -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccch
Q psy3292         106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCD  159 (213)
Q Consensus       106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~  159 (213)
                                       ......+......+.+...+...+|..+++.+.|++.|.+||+..+.+..++++
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l  393 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV  393 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence                             122334555666777888888899999899999999999999988877776643

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.71  E-value=3.2e-07  Score=75.71  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCC
Q psy3292          49 ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSP  109 (213)
Q Consensus        49 ~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~  109 (213)
                      ..+.+.+...++..++.+..|++.||+|||+.+..+.....++. ...+.++.+.+.+                  ....
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence            34566677788888999999999999999999998888777777 6666665554433                  1111


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         110 DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..+....+...+...+...+|..+|+.++|.+.+..|++..+...+..
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~  386 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGV  386 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHH
Confidence            223334444557777788999999999999999999999988877655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.71  E-value=2.6e-07  Score=86.00  Aligned_cols=107  Identities=12%  Similarity=-0.069  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH--HHH-HHHHHH-HhhhcCchhHHHH-----------------
Q psy3292          47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS--TAT-LSAFSV-GQTFGWSSPVLAY-----------------  105 (213)
Q Consensus        47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~--~~~-~~~~~~-~~~~~~~~~~l~~-----------------  105 (213)
                      ....++..+++.+...+.+++.|.++||+|||+++..  ... ...... .....++++.+++                 
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence            3557888889999999999999999999999997533  222 222222 2233366776655                 


Q ss_pred             -hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292         106 -LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS  153 (213)
Q Consensus       106 -~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~  153 (213)
                       +.....+........+...+..++|..+|+.++|++.+..||++.+..
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence             111122223334455788888999999999999999999999988733

>TIGR00897 2A0118 polyol permease family

Probab=98.71  E-value=5.5e-07  Score=74.54  Aligned_cols=123  Identities=16%  Similarity=0.126  Sum_probs=83.6

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH-HHHHHHHHHH-Hhh-----hcCchhHH
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL-STATLSAFSV-GQT-----FGWSSPVL  103 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~-~~~~~~~~~~-~~~-----~~~~~~~l  103 (213)
                      ...|.+.+   +.+.++.+.+.+.+...++..++.++.|+++||+|||+... .+.+...+.. ...     ..++.+..
T Consensus       243 ~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       243 VFLPMFVA---ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            34577777   67889999999999999999999999999999999988753 2222222222 211     12233222


Q ss_pred             HH-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         104 AY-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       104 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..                 ...+..| ..+....+.......+|..++|.+.|.+.|..|+...+++.+.+
T Consensus       320 ~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       320 LIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            11                 1111212 23344456677778889999999999999999998888776655

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.69  E-value=1.7e-07  Score=78.10  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             hhcccccc-hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-HhhhcC
Q psy3292          22 VGQTFGWS-SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQTFGW   98 (213)
Q Consensus        22 ~g~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~~~~   98 (213)
                      +-...+.. ++..+.+.+   +++.++.+.|++.+++.++..+++++.|.++||+|| |+.+.++.+...+.. ...+.+
T Consensus        14 ~~~~~~~~~~~l~~~l~~---~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~   90 (418)
T TIGR00889        14 QWFIWGSWLVTLGSYMSK---TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT   90 (418)
T ss_pred             HHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc
Confidence            33334444 444566667   789999999999999999999999999999999965 777777777777777 777777


Q ss_pred             chhHHHH
Q psy3292          99 SSPVLAY  105 (213)
Q Consensus        99 ~~~~l~~  105 (213)
                      +++.+.+
T Consensus        91 ~~~~~~~   97 (418)
T TIGR00889        91 TPAGMFP   97 (418)
T ss_pred             CHHHHHH
Confidence            7655433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.69  E-value=4.5e-07  Score=74.79  Aligned_cols=109  Identities=9%  Similarity=0.050  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCC
Q psy3292          49 ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSP  109 (213)
Q Consensus        49 ~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~  109 (213)
                      +.++..+.+.++..++.++.|++.||+|||+.+..+..+..++. ...+.++.+....                  ...+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45666778888999999999999999999999888888877777 7666666544332                  0111


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         110 DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..|...+....+.......+|..+++.+.|.+.|..|++..++....+
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  377 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA  377 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            122222233345556667788888999999999999999888776655

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.66  E-value=8.7e-07  Score=73.33  Aligned_cols=122  Identities=19%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             hhhhCCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh---hhc-CchhHHHH--
Q psy3292          34 AYLVSPDSPVPMSEDESSWVVASME-FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ---TFG-WSSPVLAY--  105 (213)
Q Consensus        34 ~~~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~---~~~-~~~~~l~~--  105 (213)
                      +.+.+   +.+.++++.+++.+... ++..+|.++.|++.||+|||+.+..+.....+.. ..   .+. ++.+.+..  
T Consensus       234 ~~l~~---~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIR---GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI  310 (402)
T ss_pred             HHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            45555   67889999999886654 5689999999999999999998877666655443 22   333 33332221  


Q ss_pred             ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292         106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC  158 (213)
Q Consensus       106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~  158 (213)
                                      ......+.....+..+...+...+|...++.++|.+.|++|++..+.+.++++
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~  379 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA  379 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence                            11112222333445566666777888877889999999999999888877663

>KOG2504|consensus

Probab=98.66  E-value=4.6e-08  Score=83.17  Aligned_cols=145  Identities=15%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             HHHHHHHHHH-HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292           9 ILAGMSATLS-AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL   87 (213)
Q Consensus         9 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~   87 (213)
                      |.+++...+. .+.+|...+.- ...+.+++   +++.+.++.+|+.++......+.+++.+.+.||+|.|.+.+.+.++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~G-v~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFG-LLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheeh-hhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            4444444443 33455444432 45577777   8888999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HhhhcCchhHHHH-----------hc---CCCCCCCCCcchhhHHHHH----HHHHHHHHHHHHHHHHhHhccc
Q psy3292          88 SAFSV-GQTFGWSSPVLAY-----------LV---SPDSPVPMSEDESSWVVAS----MEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus        88 ~~~~~-~~~~~~~~~~l~~-----------~~---~~~~~~~~~~~~~~~~~~~----~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                      ..++. +..|+++.+++++           +.   ..+..-+.-++.++..+++    ..+|..+-+.+.-++.+.+|||
T Consensus       121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r  200 (509)
T KOG2504|consen  121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWR  200 (509)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcH
Confidence            99999 9999999999877           00   0011112234444554444    4555666666777778899999


Q ss_pred             hhhhhhccc
Q psy3292         149 WTLLSTGML  157 (213)
Q Consensus       149 ~~~~~~~~~  157 (213)
                      +.+++...+
T Consensus       201 ~~~l~~~~~  209 (509)
T KOG2504|consen  201 GALLIFGGI  209 (509)
T ss_pred             HHHHHHHHH
Confidence            999877766

>TIGR00788 fbt folate/biopterin transporter

Probab=98.66  E-value=3.5e-07  Score=77.38  Aligned_cols=139  Identities=21%  Similarity=0.212  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-----hhHHHHHHHHHH
Q psy3292          14 SATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-----RKWTLLSTATLS   88 (213)
Q Consensus        14 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-----rr~~~~~~~~~~   88 (213)
                      +.....+..|.-.-......|.+++   ++++++++.+...+...+...+-.+ +|+++||++     ||+.++++.++.
T Consensus        30 ~~~~~y~~qGl~~l~~~~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        30 IGLQVLFVKGIAGLMRLPLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHhhHHHHhhhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            3344456777762233344577777   7899999999999999999988777 999999998     777777777666


Q ss_pred             -HHHH-HhhhcCchhHHHH-------------------hcCCCCCCCCCcc---hhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292          89 -AFSV-GQTFGWSSPVLAY-------------------LVSPDSPVPMSED---ESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus        89 -~~~~-~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~---~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                       .+.. ..+..++......                   +..+..+ ...+.   ..++......+|..+|+.++|.+.++
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence             3444 4444444322211                   1122222 11111   11233333458999999999999999


Q ss_pred             hccchhhhhhccc
Q psy3292         145 IGRKWTLLSTGML  157 (213)
Q Consensus       145 ~g~~~~~~~~~~~  157 (213)
                      +||+..+++.+..
T Consensus       185 ~~~~~~f~~~a~l  197 (468)
T TIGR00788       185 TLTRILFLITAAL  197 (468)
T ss_pred             cCcchHHHHHHHH
Confidence            9999998777655

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.64  E-value=1.1e-07  Score=84.08  Aligned_cols=107  Identities=17%  Similarity=0.110  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCCC
Q psy3292          50 SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSPD  110 (213)
Q Consensus        50 ~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~  110 (213)
                      ......+..++..+|.++.|+++||+|||+++.++.++..++. ...+.++...+.+                  ...+.
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667778999999999999999999999999999988888 7777766444332                  22334


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         111 SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .|...+....++..+...+|..+||++++.+.+. +....+++.++.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~  722 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAA  722 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence            4555555566778888899999999999888764 344444444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.64  E-value=5.1e-07  Score=73.46  Aligned_cols=126  Identities=12%  Similarity=0.092  Sum_probs=79.9

Q ss_pred             chhhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH--HHH------HHHHHHHHHH-HhhhcC
Q psy3292          29 SSPVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW--TLL------STATLSAFSV-GQTFGW   98 (213)
Q Consensus        29 ~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~--~~~------~~~~~~~~~~-~~~~~~   98 (213)
                      .....|.+. +   +.+.++.+.++..+...++..++.++.|+++||+|||+  ...      .+.....+.. .....+
T Consensus       234 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (399)
T TIGR00893       234 FLTWFPTYLVQ---ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN  310 (399)
T ss_pred             HHHHHHHHHHH---HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence            334455543 4   56788999999999999999999999999999999996  111      1111111111 111111


Q ss_pred             chhHHHH-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292          99 SSPVLAY-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML  157 (213)
Q Consensus        99 ~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~  157 (213)
                      +......                 ...+..|...+....+.......+|..+++.+.|++.|..| ++..+...+..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~  387 (399)
T TIGR00893       311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAAL  387 (399)
T ss_pred             hHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHH
Confidence            2221111                 12223333333444466777778999999999999999998 88887766655

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.64  E-value=3.3e-07  Score=74.05  Aligned_cols=113  Identities=15%  Similarity=0.192  Sum_probs=81.7

Q ss_pred             hhhhhhhCCCCC-CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc-hhHHHH--
Q psy3292          31 PVLAYLVSPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS-SPVLAY--  105 (213)
Q Consensus        31 ~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~-~~~l~~--  105 (213)
                      ...|.+.+   + ++.++.+.+...+...++..++.++.+++.||+|||+.+..+.....+.. ...+.++ .+...+  
T Consensus       232 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (365)
T TIGR00900       232 ALFPYVQS---KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW  308 (365)
T ss_pred             HHhHHHHH---HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence            34566654   3 67889999999999999999999999999999999999888877777766 6666553 443322  


Q ss_pred             ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292         106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus       106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                                      ...+..|...+....+.......+|..+++.+.|.+.|++|
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                            11112222223333466666778899999999999998865

>TIGR01272 gluP glucose/galactose transporter

Probab=98.61  E-value=8.1e-07  Score=71.16  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=83.8

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----  105 (213)
                      -.+.|.++...++.++++.+...+.+..+..+|.+..+++.||+|+|+.+..+..+..++. +....++......     
T Consensus       162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g  241 (310)
T TIGR01272       162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALG  241 (310)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455543122468999999999999999999999999999999999998888877777666 5544433221111     


Q ss_pred             ------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292         106 ------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus       106 ------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                                  ......|.. .....+. ..+..+|..++|++.|.++|+.|.+..+++..
T Consensus       242 ~~~s~i~P~~~s~a~~~~~~~-~~~asai-~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       242 LFNSIMFPTIFSLALNALGRH-TSQGSGI-LCLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh-hhhhHHH-HHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence                        111111211 1222233 45677899999999999999999888876433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00896 CynX cyanate transporter

Probab=98.61  E-value=9.1e-07  Score=71.85  Aligned_cols=114  Identities=17%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH-HhhhcCchhHH--HH-
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV-GQTFGWSSPVL--AY-  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~-~~~~~~~~~~l--~~-  105 (213)
                      ...|.+.+   +.+.++.+.+...+...++..+++++.|++.||+ +||+.+..+..+..++. ...+..+....  .+ 
T Consensus       218 ~~lp~~~~---~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  294 (355)
T TIGR00896       218 GWLPAILI---SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALV  294 (355)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34577776   5688999999999999999999999999999999 56667777766666666 55554432211  11 


Q ss_pred             ---hc--------CCCCCCCCCcc----hhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292         106 ---LV--------SPDSPVPMSED----ESSWVVASMEFGCWAIPFFAGMLCDRIGR  147 (213)
Q Consensus       106 ---~~--------~~~~~~~~~~~----~~~~~~~~~~lg~~~g~~~~g~l~~~~g~  147 (213)
                         ..        .........+.    ..+...+...++..+||.+.|++.|+.|.
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               00        00000111112    22444555667778999999999999874

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.61  E-value=8.6e-07  Score=72.86  Aligned_cols=123  Identities=13%  Similarity=0.134  Sum_probs=85.5

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh-hcCchhHHHH----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT-FGWSSPVLAY----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~-~~~~~~~l~~----  105 (213)
                      ..|.+.+   ..+.++++.+.+.+...++..++.++.|++.||+|+|+.+..+..+..++. ... ..++.+....    
T Consensus       222 ~~~~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  298 (382)
T PRK10091        222 IKPYMMF---ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI  298 (382)
T ss_pred             HHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3455655   578899999999999999999999999999999999999888887777766 443 3343332211    


Q ss_pred             ----hcC-------CCCCCCCCcchhh--HHHHHHHHHHHHHHHHHHHHHhH-hccchhhhhhccc
Q psy3292         106 ----LVS-------PDSPVPMSEDESS--WVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTGML  157 (213)
Q Consensus       106 ----~~~-------~~~~~~~~~~~~~--~~~~~~~lg~~~g~~~~g~l~~~-~g~~~~~~~~~~~  157 (213)
                          ...       ...+....++..+  .....+.+|..+||.++|++.|. .|++..+......
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~  364 (382)
T PRK10091        299 CCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL  364 (382)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence                000       0001111122222  23556789999999999999996 6788888776655

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.60  E-value=5.7e-07  Score=74.76  Aligned_cols=116  Identities=15%  Similarity=0.011  Sum_probs=79.9

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH--
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY--  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~--  105 (213)
                      ...|.+.+   +.+.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+.. .....+  +......  
T Consensus       252 ~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        252 GLLPTYLA---GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            34566666   567888999999999999999999999999999999999888877766555 333222  2111111  


Q ss_pred             ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccch
Q psy3292         106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW  149 (213)
Q Consensus       106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~  149 (213)
                                      ...+..|...+....+.......+|..+||.+.|++.|++|...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA  388 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence                            00111122222333456666778899999999999999988544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.60  E-value=1.4e-06  Score=71.71  Aligned_cols=122  Identities=14%  Similarity=-0.033  Sum_probs=83.8

Q ss_pred             hhhhhCCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hhhh-----cCchhHHH
Q psy3292          33 LAYLVSPDSPVPMSEDESSWVVASME-FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTF-----GWSSPVLA  104 (213)
Q Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~-----~~~~~~l~  104 (213)
                      .+.+.+   |.+.++++.+++..... .+..++.++.|++.||+|+|+.+..+..+..+..  ....     .++.....
T Consensus       231 ~~~~l~---~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       231 SKLYLV---DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             hhHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            344555   57899999999988776 4777889999999999999999887766542222  2111     11111111


Q ss_pred             H------------------h-cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y------------------L-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~------------------~-~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .                  . .....+....+...+...+..++|..+|+.++|.+.|+.|++..+.....+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~  379 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVL  379 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            0                  1 111112234455567888889999999999999999999998888776655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.60  E-value=1.4e-06  Score=71.67  Aligned_cols=121  Identities=13%  Similarity=0.036  Sum_probs=84.5

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----  105 (213)
                      ..|.+.+   +.+.++.+.+.+.+...++..+..++.+++.||+|+|+.+..+.....++. ...+.++.+.+.+     
T Consensus       227 ~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  303 (382)
T PRK11128        227 FSAIYWQ---AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH  303 (382)
T ss_pred             HHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3455556   678899999999999999999999999999999999999999988888888 7777777665544     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                   ..... +........+... ....+|..+|+.++|.+.|++|. ..++..+..
T Consensus       304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~  367 (382)
T PRK11128        304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALV  367 (382)
T ss_pred             HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence                         00111 1101111122222 22345778999999999999987 444444433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.59  E-value=7.1e-07  Score=72.79  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             hhhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHH-HHH--Hhhh--cCchhHH
Q psy3292          30 SPVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSA-FSV--GQTF--GWSSPVL  103 (213)
Q Consensus        30 ~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~-~~~--~~~~--~~~~~~l  103 (213)
                      ....|.+. +   +++.++.+.+...+...++..++.++.|+++||+|||+.+.....+.. .+.  ...+  ..+.+..
T Consensus       239 ~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       239 TTYLPTYLTQ---TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34455554 5   567889999999999999999999999999999999998775544332 231  1112  1233322


Q ss_pred             HH------------------hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHhc-cchhhhhhc
Q psy3292         104 AY------------------LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTG  155 (213)
Q Consensus       104 ~~------------------~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~  155 (213)
                      ..                  ...+..|...+....+... ....+|..++|.+.|++.|+.| |+...+...
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            11                  1223334333333344433 3345788899999999999998 666554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.59  E-value=7.8e-07  Score=75.04  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhchhHHH
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGRKWTL   81 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Grr~~~   81 (213)
                      ++...++....-..+.++..    .+..+.+.+   +++.++.+.+++..+..+...+.+++.|.++|    |+|||+.+
T Consensus         4 ~~li~~~~~~~Giq~~~~l~----~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~   76 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQ----LSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF   76 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH
Confidence            44444444433334443332    334444555   68899999999999999999999999999999    59999998


Q ss_pred             HHH-HHHHHHHH-HhhhcCchh-----------------HHHH------------------hcCCCCCCCCC--cchhhH
Q psy3292          82 LST-ATLSAFSV-GQTFGWSSP-----------------VLAY------------------LVSPDSPVPMS--EDESSW  122 (213)
Q Consensus        82 ~~~-~~~~~~~~-~~~~~~~~~-----------------~l~~------------------~~~~~~~~~~~--~~~~~~  122 (213)
                      +.. .....++. ...++++..                 ...+                  +..+..|...+  +...++
T Consensus        77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            876 44455555 666655421                 1110                  22333333322  234456


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy3292         123 VVASMEFGCWAIPFFAGML  141 (213)
Q Consensus       123 ~~~~~~lg~~~g~~~~g~l  141 (213)
                      .....++|..+|+.+++..
T Consensus       157 ~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6677788999998888765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.58  E-value=7.4e-07  Score=75.09  Aligned_cols=124  Identities=13%  Similarity=0.067  Sum_probs=84.6

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh--hchhHHHHHH--HHHHHHHH-HhhhcCchhHHHH
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR--IGRKWTLLST--ATLSAFSV-GQTFGWSSPVLAY  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~--~Grr~~~~~~--~~~~~~~~-~~~~~~~~~~l~~  105 (213)
                      ..+|.+.+   +.+.++.+.+++.++..++..+++++.|.++||  +++|+...+.  .....+.. .....++.+.+.+
T Consensus       262 ~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i  338 (455)
T TIGR00892       262 IFLVPYAK---DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI  338 (455)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            44566666   678999999999999999999999999999997  3344433333  23333444 4445566554332


Q ss_pred             ------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292         106 ------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML  157 (213)
Q Consensus       106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~  157 (213)
                                        ...+..|........+...+...+|..+|+.++|.+.|..| ++..+.+.++.
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~  409 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI  409 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence                              11112222333344567777788999999999999999884 88888877765

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.57  E-value=3.7e-07  Score=77.07  Aligned_cols=123  Identities=15%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--Cc-h--hHH-H
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WS-S--PVL-A  104 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~-~--~~l-~  104 (213)
                      ..|.+.+   +.+.++.+..+......++..++.++.++++||+|||+.+..+..+..++. .....  .+ .  ... .
T Consensus       293 ~~p~i~~---~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~  369 (479)
T PRK10077        293 YAPEIFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  369 (479)
T ss_pred             HHHHHHH---HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            3466666   667777777777777888889999999999999999999999888887776 54322  11 1  111 0


Q ss_pred             H------h-----------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH------HHhHhccchhhhhhccc
Q psy3292         105 Y------L-----------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGM------LCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~------~-----------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~------l~~~~g~~~~~~~~~~~  157 (213)
                      .      .           ..+..|...+....+.......+|..+++.+.+.      +.|.+|++..+++.++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  445 (479)
T PRK10077        370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHH
Confidence            1      1           1111121222223344555556666666555443      34678888888776655

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.55  E-value=9.8e-07  Score=75.44  Aligned_cols=125  Identities=17%  Similarity=0.096  Sum_probs=100.0

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ..+|.+.+  +.++.++...|++.+++.+|+.+|+++.+.+.+|+++++.+..+.+...+.. ..+++++.+....    
T Consensus       239 aLlPl~a~--~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  239 ALLPLFAR--DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             HhhhHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            45676643  1568899999999999999999999999999999999999999998888888 8889888776544    


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                    ..+...|.+......+...+....+..+|.++.|.++|.+|-+..+.+.++.
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~  382 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAA  382 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence                          2233445555555566777777788899999999999999999888766544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.54  E-value=8.3e-07  Score=73.09  Aligned_cols=142  Identities=10%  Similarity=0.007  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHH--HHHHHHHhhhhhhh-HHhhhhhchhHHHHHHHHHHH
Q psy3292          13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVV--ASMEFGCWAIPFFA-GMLCDRIGRKWTLLSTATLSA   89 (213)
Q Consensus        13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--s~~~~g~~ig~~~~-g~l~d~~Grr~~~~~~~~~~~   89 (213)
                      .......+.+|.-.+...|.+|.+.+   +.+.+.++.|.+.  ++..+...+.+++. ++..||+||||..++...+..
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            34455578889999999999999999   8899999999973  56677777777777 557999999998766554322


Q ss_pred             H-HH-Hhh---hcCc-h-hHHHH------h---c----CCCCCCCCCcchhhHHHHH----HHHHHHHHHHHHHHHHhHh
Q psy3292          90 F-SV-GQT---FGWS-S-PVLAY------L---V----SPDSPVPMSEDESSWVVAS----MEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus        90 ~-~~-~~~---~~~~-~-~~l~~------~---~----~~~~~~~~~~~~~~~~~~~----~~lg~~~g~~~~g~l~~~~  145 (213)
                      . .. ...   ...+ . +.+..      .   .    ....+...++++.+...+.    ..+|..+|+...+++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 12 222   2222 1 11111      0   0    0011223344444443333    3556666766677889999


Q ss_pred             ccchhhhhhccc
Q psy3292         146 GRKWTLLSTGML  157 (213)
Q Consensus       146 g~~~~~~~~~~~  157 (213)
                      |||..+++.+..
T Consensus       161 gw~~~f~~~a~l  172 (390)
T TIGR02718       161 GQRPAFLLVACV  172 (390)
T ss_pred             CHHHHHHHHHHH
Confidence            999999887766

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.53  E-value=2.9e-06  Score=70.99  Aligned_cols=124  Identities=13%  Similarity=-0.034  Sum_probs=78.1

Q ss_pred             hhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--ch-hHHHHH---HHHHHHHHHHhhhcCchhHH
Q psy3292          31 PVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GR-KWTLLS---TATLSAFSVGQTFGWSSPVL  103 (213)
Q Consensus        31 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Gr-r~~~~~---~~~~~~~~~~~~~~~~~~~l  103 (213)
                      ...|.+. +   +.+.++.+.+...+.+.++..+|.++.|+++||+  ++ |+....   +.....+........+....
T Consensus       264 ~~~p~~l~~---~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK11663        264 DWGNLYMSE---TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQ  340 (434)
T ss_pred             HHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence            3456555 4   5788999999999999999999999999999999  33 332221   11111111111111121111


Q ss_pred             HH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         104 AY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       104 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..                  ...+..|........+.......+|..++|.+.|++.|+.|++..+...+++
T Consensus       341 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~  412 (434)
T PRK11663        341 AACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIA  412 (434)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHH
Confidence            00                  1112222223334446677778899999999999999999999888766655

>PRK10054 putative transporter; Provisional

Probab=98.51  E-value=1.5e-06  Score=71.94  Aligned_cols=115  Identities=10%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-CchhHHHH----------h---
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-WSSPVLAY----------L---  106 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-~~~~~l~~----------~---  106 (213)
                      +.+.++...+...+...+.....+++.|.+.||+++|+.+..+..+..++. ...+. ++.+.+.+          .   
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  317 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP  317 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence            456677788888888888878888999999999999999988888888777 66654 34443322          0   


Q ss_pred             -----cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         107 -----VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       107 -----~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                           .....|........+. .+...+|..+||.++|.+.|+.|....+...+..
T Consensus       318 ~~~~~~~~~~p~~~~~~~~~~-~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~  372 (395)
T PRK10054        318 GEYMLIDHIAPPGMKASYFSA-QSLGWLGAAINPLVSGVILTTLPPWSLFVILALA  372 (395)
T ss_pred             hHHHHHHHhCCcccceehHhH-HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence                 1112233333332332 2355689999999999999999988777665444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.51  E-value=1.2e-06  Score=72.53  Aligned_cols=111  Identities=21%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             cccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-HhhhcCchh
Q psy3292          24 QTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQTFGWSSP  101 (213)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~~~~~~~  101 (213)
                      +..|...|..+.+.+   +.+.|+.|.|.+.+...+...++++++|.++||.++ |+.+.++.+...+.. .....++++
T Consensus        16 ~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~   92 (400)
T PF03825_consen   16 FAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW   92 (400)
T ss_pred             HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            335566678888888   889999999999999999999999999999999874 666667666666666 666677766


Q ss_pred             HHHH-------hcCCCCCC---------CCCcchhhHHHHHHHHHHHHHHHH
Q psy3292         102 VLAY-------LVSPDSPV---------PMSEDESSWVVASMEFGCWAIPFF  137 (213)
Q Consensus       102 ~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~~  137 (213)
                      .+..       ...+..|.         ..++.+.+..+...++|..++...
T Consensus        93 ~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   93 WLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHH
Confidence            5544       11111111         123445577888888888887665

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.49  E-value=2e-06  Score=69.02  Aligned_cols=144  Identities=17%  Similarity=0.126  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHH
Q psy3292          10 LAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSA   89 (213)
Q Consensus        10 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~   89 (213)
                      .....+.+..+.---.....+|.++.+.+   |++.|.+..+.++++..+...+.+++.+++++|+|-++.+.++.++..
T Consensus        12 ~li~gIvlia~NLR~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~   88 (395)
T COG2807          12 LLLAGIVLIAFNLRPAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA   88 (395)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333444433445667788899998   999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HhhhcCchhHHHH----------hcCCCCCCCCC-------cchhhHHHHHHHHHHHHHHHHHHHHHhHh-ccchh
Q psy3292          90 FSV-GQTFGWSSPVLAY----------LVSPDSPVPMS-------EDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWT  150 (213)
Q Consensus        90 ~~~-~~~~~~~~~~l~~----------~~~~~~~~~~~-------~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-g~~~~  150 (213)
                      ++. +-... +...++.          ..+...|..++       ....+.++....+|.++++-+.-.++++. |||..
T Consensus        89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a  167 (395)
T COG2807          89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA  167 (395)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence            999 77666 3333333          22223333222       22335566666778888888888888887 79998


Q ss_pred             hhhhccc
Q psy3292         151 LLSTGML  157 (213)
Q Consensus       151 ~~~~~~~  157 (213)
                      +.+=+.+
T Consensus       168 L~~WAl~  174 (395)
T COG2807         168 LGFWALL  174 (395)
T ss_pred             HHHHHHH
Confidence            7655555

>PRK15075 citrate-proton symporter; Provisional

Probab=98.48  E-value=5.2e-06  Score=69.49  Aligned_cols=117  Identities=16%  Similarity=0.111  Sum_probs=74.6

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hhh---hcCchhHH--
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQT---FGWSSPVL--  103 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~---~~~~~~~l--  103 (213)
                      ...|.+.+  +.++.++.+.++....+.++..++.++.|+++||+|||+.+..+..+..+..  ...   ..++....  
T Consensus       259 ~~~p~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        259 VYTPTFGK--TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            34566654  0368888889999889999999999999999999999998877654432211  111   12222111  


Q ss_pred             --HH--------------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccch
Q psy3292         104 --AY--------------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKW  149 (213)
Q Consensus       104 --~~--------------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~  149 (213)
                        ..              ...+..|...+....+...+.... +..++|.+.|++.|+.|+++
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~  399 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA  399 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence              00              122334444454444554444443 46679999999999998754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.47  E-value=6e-06  Score=68.29  Aligned_cols=121  Identities=15%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH-HHHHH-HhhhcCchhHHHH----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL-SAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~-~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ..|.+.+   +++.++++.+...+...++..++.++.+++.||.+|+ .+...... ..... .....++.+.+..    
T Consensus       239 ~~p~~~~---~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  314 (394)
T PRK10213        239 IRPVYMN---LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWGSDKIVATGVAII  314 (394)
T ss_pred             HHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3477776   6788999999999999999999999999999996544 43333333 33333 3334444433322    


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                    ......|. ..+...+...+..++|..+|+.++|++.|+.|.+..+...+..
T Consensus       315 ~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~  379 (394)
T PRK10213        315 WGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL  379 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence                          01111121 1122334556677899999999999999999988777766544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.45  E-value=3.2e-06  Score=71.66  Aligned_cols=115  Identities=14%  Similarity=0.033  Sum_probs=70.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH-------HHHHHHHHHHHHH-HhhhcCchhHHHH------h-
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW-------TLLSTATLSAFSV-GQTFGWSSPVLAY------L-  106 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~-------~~~~~~~~~~~~~-~~~~~~~~~~l~~------~-  106 (213)
                      +++.++.+.+.+.+...++..++.++.|+++||+|||+       ...+...+..+.. ......+.+...+      . 
T Consensus       282 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~  361 (476)
T PLN00028        282 RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIF  361 (476)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999762       2222222222333 3333433322211      0 


Q ss_pred             ----cC---CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH---hccchhhhhhccc
Q psy3292         107 ----VS---PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR---IGRKWTLLSTGML  157 (213)
Q Consensus       107 ----~~---~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~---~g~~~~~~~~~~~  157 (213)
                          ..   ...+ ...++..+...+..+.+..+|+++++++.+.   .+++..+.+.+++
T Consensus       362 ~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~  421 (476)
T PLN00028        362 VQAACGATFGIVP-FVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVM  421 (476)
T ss_pred             HHHhhhhhcccCc-ccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHH
Confidence                00   0111 2233445666666666777777777777653   3577777766554

>TIGR00895 2A0115 benzoate transport

Probab=98.45  E-value=2.3e-06  Score=69.95  Aligned_cols=108  Identities=23%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ...|.+.+   +.+.++.+.+...+...++..++.++.|++.||+|||+............. ......+......    
T Consensus       271 ~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR00895       271 NWLPKLMV---ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI  347 (398)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            34466666   678889999999999999999999999999999999955444433333333 3222333332222    


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGML  141 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l  141 (213)
                                    ...+..|...+....+...+...+|..+||.+.|++
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                          122223333333344666667778888888888765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.44  E-value=6.4e-06  Score=68.69  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=73.1

Q ss_pred             ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-chhHHHH------------------
Q psy3292          46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-SSPVLAY------------------  105 (213)
Q Consensus        46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-~~~~l~~------------------  105 (213)
                      ++.+.+++.+...++..++.++.++++||+|||+.+..+..+..++. ...+.+ +.+...+                  
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888899999999999999999999999999988887777 655543 3232221                  


Q ss_pred             hcCCCCCC-------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292         106 LVSPDSPV-------PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus       106 ~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                      ...+..+.       .......+.......+|..+|+.+.|++.+..|++
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            11222221       11222335566667889999999999999988874

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.43  E-value=2.9e-06  Score=71.09  Aligned_cols=124  Identities=12%  Similarity=0.031  Sum_probs=74.7

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH---HHHH-Hhhh--cCchhHHHH
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS---AFSV-GQTF--GWSSPVLAY  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~---~~~~-~~~~--~~~~~~l~~  105 (213)
                      ..|.+.+ + ..+.++.+.++..+.+.++..++.++.|+++||+|+++....+....   .++. ....  ..+.+....
T Consensus       273 ~~p~~l~-~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (438)
T TIGR00712       273 WSPTYLK-E-VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMI  350 (438)
T ss_pred             hHHHHHH-H-ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            4455554 0 35788999999999999999999999999999997543222222111   1111 1111  112221111


Q ss_pred             ------------------hcCCCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ------------------LVSPDSPVPMSEDESSWVVASMEFG-CWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg-~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                        ...+..|...+....+.......+| ..+||.+.|.+.|..|+...+.+....
T Consensus       351 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~  421 (438)
T TIGR00712       351 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  421 (438)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHH
Confidence                              1112223333444456666666665 468999999999999988887655444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.43  E-value=1.3e-06  Score=55.69  Aligned_cols=75  Identities=15%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL  103 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l  103 (213)
                      --.+.|++|.+++   |.+.|.++.+++.+.+.+|.++|++...++.++..+++.+..+.+...+.. .+++..+.+..
T Consensus         8 RFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    8 RFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            3345789999999   999999999999999999999999999999999888888999999999988 88888776554

Note that many members are hypothetical proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.43  E-value=4e-06  Score=71.75  Aligned_cols=145  Identities=20%  Similarity=0.251  Sum_probs=101.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      +..+..|....+..++...+.....|       +..   +..-|+...+++.++..+-..+.+++.|.++||+.||+.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~w-------lv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAW-------LVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            44566777777777777776444433       333   34568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-Hhhh----c-CchhHHHH----------h----cCCCCCCCCCcc----hhhHHHHHHHHHHHHHHHHH
Q psy3292          83 STATLSAFSV-GQTF----G-WSSPVLAY----------L----VSPDSPVPMSED----ESSWVVASMEFGCWAIPFFA  138 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~----~-~~~~~l~~----------~----~~~~~~~~~~~~----~~~~~~~~~~lg~~~g~~~~  138 (213)
                      .+-++..+.. ...+    . .+.+.+++          +    .....|..+.++    ..+......++...+||.++
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg  159 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG  159 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence            9888765544 3222    1 23344433          0    011112222222    23556667888999999999


Q ss_pred             HHHHhHhccchhhhhhccc
Q psy3292         139 GMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       139 g~l~~~~g~~~~~~~~~~~  157 (213)
                      |.+...+|-.+.+.+.++.
T Consensus       160 G~Lva~~G~~~~f~inals  178 (524)
T PF05977_consen  160 GILVAFFGAAAAFLINALS  178 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999998888877665

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.43  E-value=8.2e-06  Score=65.56  Aligned_cols=64  Identities=25%  Similarity=0.207  Sum_probs=56.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHHHhhhcCchhHHHH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAY  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (213)
                      .++.++.+++.+...-+...++...+.|.++||+|||+.-+..++++.++++.-..++++.+++
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~  126 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLL  126 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            5899999999999999999999999999999999999999999999988885556677777766

>KOG0569|consensus

Probab=98.41  E-value=1.1e-05  Score=67.98  Aligned_cols=163  Identities=14%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      .++...+.+...++.-..|.+.-.  ...-.+.+   +-++++.+..+.+.....-..+.++....+.||+|||+.++.+
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~--~Yst~i~~---~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~  341 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIF--FYSTSIFK---TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLIS  341 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeH--HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            344444555555554444443322  22233334   5689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-Hhhhc---Cchh---HH--HH--------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy3292          85 ATLSAFSV-GQTFG---WSSP---VL--AY--------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIP  135 (213)
Q Consensus        85 ~~~~~~~~-~~~~~---~~~~---~l--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~  135 (213)
                      ..++.+.. .+...   .+..   .-  .+                    +..+..|...+..+.+.......+...+-.
T Consensus       342 ~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~  421 (485)
T KOG0569|consen  342 LSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence            98887777 54432   1111   11  11                    233344444444444555555555555555


Q ss_pred             HHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q psy3292         136 FFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGR  179 (213)
Q Consensus       136 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~  179 (213)
                      +....+.+.+|- ..++...+++.      +...+....+||++
T Consensus       422 ~~fp~l~~~~g~-~~filF~i~~~------~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  422 FAFPPLQNVIGP-YVFILFVIPLA------IFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHhcc-hhhHHHHHHHH------HHHHHHHHhCcccC
Confidence            556666777886 66666555532      12223344459987

>PRK10504 putative transporter; Provisional

Probab=98.41  E-value=1e-05  Score=68.35  Aligned_cols=118  Identities=15%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             chhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc---CchhHHH
Q psy3292          29 SSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG---WSSPVLA  104 (213)
Q Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~---~~~~~l~  104 (213)
                      .....|.+.+  ...+.++.+.++......++..++.++.+++.||+|||+.+..+..+..+.. ...+.   .+...+.
T Consensus       280 ~~~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (471)
T PRK10504        280 LPFMTPVFLQ--IGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            3344565543  1367889999999999999999999999999999999999998888777766 54442   2222111


Q ss_pred             ---H---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292         105 ---Y---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus       105 ---~---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                         .               ......|........+.......+|..+|+.+.|.+.+..|..
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence               1               1112233334444557777778899999999999999887763

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.40  E-value=1.3e-05  Score=65.96  Aligned_cols=107  Identities=10%  Similarity=-0.008  Sum_probs=79.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------------  105 (213)
                      +++.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++. ...+.++......               
T Consensus       233 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  312 (392)
T PRK10473        233 QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV  312 (392)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            567888999999999999999999999999999999999998888877777 6665544332111               


Q ss_pred             -hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292         106 -LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL  151 (213)
Q Consensus       106 -~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~  151 (213)
                       ......|.   +...+...+...++..+|+.+++++.+++|.....
T Consensus       313 ~~~~~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~  356 (392)
T PRK10473        313 AMSQALGPF---SLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWN  356 (392)
T ss_pred             HHHHHhccC---cccccHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence             11111221   22346667778889999999999999999875433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.40  E-value=2.1e-06  Score=73.19  Aligned_cols=90  Identities=17%  Similarity=0.021  Sum_probs=59.2

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-----chh-HHHH----------------hcCCCC
Q psy3292          55 ASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-----SSP-VLAY----------------LVSPDS  111 (213)
Q Consensus        55 s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-----~~~-~l~~----------------~~~~~~  111 (213)
                      ....++..++.++.+++.||+|||+.++.+..+..+.. ..++..     +.. ....                ...+..
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            34455677788999999999999999888877766655 443321     111 1111                112333


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292         112 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus       112 ~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                      |...+....+.......+|..+++.+.+++.|.
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            444444555777777888999999999988874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.38  E-value=3.9e-06  Score=69.89  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=96.5

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~------------  105 (213)
                      +++.+++++.-+.+.+..-.-..+++.|+++|| .|+|+++.++.+++.++- ..+.+.  ....+.+            
T Consensus        55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~  134 (498)
T COG3104          55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF  134 (498)
T ss_pred             cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence            367999999999999999899999999999999 799999999999999999 777663  3333333            


Q ss_pred             ------hcCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHH
Q psy3292         106 ------LVSPDSPVPM--SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRI  177 (213)
Q Consensus       106 ------~~~~~~~~~~--~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e  177 (213)
                            +..+..|+.-  ++...+......++|..++|++.+++++++||...|-..++-        ....+..+  +-
T Consensus       135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavG--------m~~gl~~f--~~  204 (498)
T COG3104         135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVG--------MIIGLVIF--LL  204 (498)
T ss_pred             cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHH--------HHHHHHHH--HH
Confidence                  1111112111  222234444556799999999999999999999888666544        12222333  66


Q ss_pred             HHHHHHhhcC
Q psy3292         178 GRKWTLLSTG  187 (213)
Q Consensus       178 s~~~~g~~~g  187 (213)
                      .|++. ...+
T Consensus       205 ~~r~~-~~~~  213 (498)
T COG3104         205 GRRHV-KGIG  213 (498)
T ss_pred             ccchh-cCCC
Confidence            77777 5544

>PRK09952 shikimate transporter; Provisional

Probab=98.37  E-value=1.7e-05  Score=66.57  Aligned_cols=113  Identities=12%  Similarity=0.024  Sum_probs=66.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh---cCc-hhHHHH-----------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF---GWS-SPVLAY-----------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~---~~~-~~~l~~-----------  105 (213)
                      +++.++...........+...++.++.|+++||+|||+.+..+.++..+.. ....   ..+ ......           
T Consensus       280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  359 (438)
T PRK09952        280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM  359 (438)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence            567777766666666667778889999999999999999887766554443 2221   122 222111           


Q ss_pred             -------hcCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhHhc--cchhhhhh
Q psy3292         106 -------LVSPDSPVPMSEDESSWVVAS-MEFGCWAIPFFAGMLCDRIG--RKWTLLST  154 (213)
Q Consensus       106 -------~~~~~~~~~~~~~~~~~~~~~-~~lg~~~g~~~~g~l~~~~g--~~~~~~~~  154 (213)
                             ...+..|...+....+..... ..+|..++|.+.+++.|..+  |+..+...
T Consensus       360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~  418 (438)
T PRK09952        360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYL  418 (438)
T ss_pred             HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence                   112233332222233333333 33678889999999988653  44444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.37  E-value=2.4e-06  Score=71.02  Aligned_cols=126  Identities=13%  Similarity=0.009  Sum_probs=78.6

Q ss_pred             hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHH-HHHHHHHHHHHH-HhhhcCchhH-HH-H
Q psy3292          30 SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWT-LLSTATLSAFSV-GQTFGWSSPV-LA-Y  105 (213)
Q Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~-~~~~~~~~~~~~-~~~~~~~~~~-l~-~  105 (213)
                      ....|.+.+ +.+.+.++.+.+...+...++..+|.++.|+++||++||+. .........++. ......+... +. .
T Consensus       262 ~~~~p~~l~-~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
T TIGR02332       262 NIWTPQILQ-SFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI  340 (412)
T ss_pred             HHHHHHHHH-hcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            345577766 22235678889999999999999999999999999997764 333333333333 2222222111 11 0


Q ss_pred             ----h----------c--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhcc
Q psy3292         106 ----L----------V--SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGM  156 (213)
Q Consensus       106 ----~----------~--~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~  156 (213)
                          .          .  .+..|...+....+.......+|..++|.+.|.+.|..| |++.++....
T Consensus       341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence                0          0  011121222233466777788899999999999999885 8887765443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10133 L-fucose transporter; Provisional

Probab=98.37  E-value=8.4e-06  Score=68.42  Aligned_cols=110  Identities=15%  Similarity=0.038  Sum_probs=78.3

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------------  105 (213)
                      ..+.++.+.+.....+.++..+|.++.+++.||+|||+++..+..+..+.. ...+.++...+..               
T Consensus       289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~  368 (438)
T PRK10133        289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTI  368 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999888877776666 5555544221111               


Q ss_pred             --hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhh
Q psy3292         106 --LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS  153 (213)
Q Consensus       106 --~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~  153 (213)
                        ...+..+.. .+...+... +..+|..+++.+.|.+.|..| -+..+++
T Consensus       369 ~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             HHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence              122222221 223334443 444688889999999999988 5666654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.36  E-value=4.7e-06  Score=67.59  Aligned_cols=110  Identities=18%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHH-HH-HHHHHHH-Hhhh--cCchhHHHH----------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLS-TA-TLSAFSV-GQTF--GWSSPVLAY----------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~-~~-~~~~~~~-~~~~--~~~~~~l~~----------  105 (213)
                      .++.++.+.+...+...++..++.++.|++.||.++ |+.... .. ....... ....  ..+......          
T Consensus       246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  325 (379)
T TIGR00881       246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVY  325 (379)
T ss_pred             HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999998643 332222 11 1112222 2111  122221111          


Q ss_pred             --------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292         106 --------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL  151 (213)
Q Consensus       106 --------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~  151 (213)
                              ...+..|...+....+.......+|..+++.+.|.+.|++||++.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence                    1122334344444556777778899999999999999999998754

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.34  E-value=1.3e-06  Score=72.76  Aligned_cols=65  Identities=14%  Similarity=-0.037  Sum_probs=51.7

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhH-HHHHHHHHHHHHH-HhhhcCc
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKW-TLLSTATLSAFSV-GQTFGWS   99 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~-~~~~~~~~~~~~~-~~~~~~~   99 (213)
                      ..+.+.+   +++.++.+.+++.++..+..++..++.|+++||    +|||| .++.+.....++. ...+.++
T Consensus        22 l~~~~~~---~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~   92 (437)
T TIGR00792        22 LLFFYTD---VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD   92 (437)
T ss_pred             HHHHHHH---ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence            3466676   789999999999999999999999999999997    68755 4566666676666 5555543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.34  E-value=5.4e-06  Score=67.80  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--chhHHHHHHHHH-HHHHH-HhhhcCch--hHHHH----------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GRKWTLLSTATL-SAFSV-GQTFGWSS--PVLAY----------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Grr~~~~~~~~~-~~~~~-~~~~~~~~--~~l~~----------  105 (213)
                      ..+.+....++..+++-.+++.|+++.|+++||.  |||...-+.+.+ ..++. ..-.+++.  .+..+          
T Consensus       282 ~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~Iy  361 (448)
T COG2271         282 VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIY  361 (448)
T ss_pred             hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999994  676554333333 33333 33344433  33222          


Q ss_pred             --------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292         106 --------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKWTLLSTGMLC  158 (213)
Q Consensus       106 --------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~~~~~~~~~~  158 (213)
                              ...+..|........|....+..+ |...+....|+++|.+||...|+...+.+
T Consensus       362 GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a  423 (448)
T COG2271         362 GPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAA  423 (448)
T ss_pred             hHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHH
Confidence                    345566666667777777766666 88888888899999999999987766553

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.34  E-value=1.5e-05  Score=65.91  Aligned_cols=108  Identities=9%  Similarity=-0.211  Sum_probs=70.1

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-----CchhHHHH----------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-----WSSPVLAY----------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~----------  105 (213)
                      +++.++.+.++......++..++.++.++++||+|+|+.+.++..+..++. .....     .+.+.+..          
T Consensus       245 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~  324 (406)
T PRK15402        245 GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIG  324 (406)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence            567888999988888888999999999999999999999888877776666 44432     22222211          


Q ss_pred             hcC-------CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccch
Q psy3292         106 LVS-------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW  149 (213)
Q Consensus       106 ~~~-------~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~  149 (213)
                      ...       ...+........+.......+|..+|+.+.+.+.+..++..
T Consensus       325 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        325 LANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            000       01111122223344445556677777777777777666544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.32  E-value=2.4e-05  Score=66.26  Aligned_cols=116  Identities=21%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh--HHHHHHHHHHHHHH-Hhhh--------cCchhHHHH-----
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK--WTLLSTATLSAFSV-GQTF--------GWSSPVLAY-----  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr--~~~~~~~~~~~~~~-~~~~--------~~~~~~l~~-----  105 (213)
                      +++.+..+...+.-+..+.+.+|+++.|++.||+|.|  ++++.+.++..+.. .-.+        .++.+.+.+     
T Consensus       311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~  390 (477)
T PF11700_consen  311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI  390 (477)
T ss_pred             hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999  88888887774444 3332        333344433     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML  157 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~  157 (213)
                                   +.....|.....+-.+.+....-....+||++.|.+.+..| -|+.+....+.
T Consensus       391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~l  456 (477)
T PF11700_consen  391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVL  456 (477)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence                         33445555544555577777778889999999999999987 56665444333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.24  E-value=7.2e-06  Score=51.60  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=51.5

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS   88 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~   88 (213)
                      .+...|..|.+.+   +.+.++.+.+.+.++..+...++++++|.++||++|++..+.....+
T Consensus        16 ~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   16 LGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            4445567777777   78999999999999999999999999999999999988877766553

>TIGR00898 2A0119 cation transport protein

Probab=98.22  E-value=1.3e-05  Score=68.16  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCch--hHHHH------------------hcCCCCC
Q psy3292          54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSS--PVLAY------------------LVSPDSP  112 (213)
Q Consensus        54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~--~~l~~------------------~~~~~~~  112 (213)
                      .....+...++.++.+++.||+|||+.+.++.++..++. ...+.++.  .....                  ...+..|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334556677889999999999999999999888887777 66655433  21111                  2334444


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292         113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus       113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                      ...+....+.......+|..++|++.+ + +..++...+.+.+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~  481 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFG  481 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHH
Confidence            444555567777778889999998888 3 3445444444433

>KOG2504|consensus

Probab=98.22  E-value=9.6e-06  Score=69.17  Aligned_cols=129  Identities=15%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH-HhhhcCchhH
Q psy3292          26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV-GQTFGWSSPV  102 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~-~~~~~~~~~~  102 (213)
                      +......+|.+.+   +.+.++.+.+.+.+...+...+|.++.|.++|+..  ++....++.+...++. ...+.++++.
T Consensus       314 ~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~  390 (509)
T KOG2504|consen  314 FNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVG  390 (509)
T ss_pred             HHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3444556688888   88999999999999999999999999999999988  4555666666677777 8888999877


Q ss_pred             HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292         103 LAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML  157 (213)
Q Consensus       103 l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~  157 (213)
                      +..                  ...+..+...-..+.+.......++..+|++++|++.|..| +...+..++..
T Consensus       391 l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~  464 (509)
T KOG2504|consen  391 LIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC  464 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence            655                  11122222333445677888889999999999999999988 78888887776

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.20  E-value=4.1e-05  Score=63.44  Aligned_cols=112  Identities=12%  Similarity=0.055  Sum_probs=77.1

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ..|.+.+   +.+.++.+.+++.+...++...+..+.+.+.|| ++.++.+..+..+..++. ...+.++.+....    
T Consensus       230 ~~p~~~~---~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        230 MLPIMVN---DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             hhhhhHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4577666   444577888888888887777777777777765 665666677777777777 6666666544322    


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                                    ...+..|........+.......+|..+|+.++|++.|+.+
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence                          12223344455555677777788999999999999998854

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.19  E-value=4.7e-05  Score=63.16  Aligned_cols=129  Identities=16%  Similarity=0.141  Sum_probs=93.1

Q ss_pred             cccchhhhhhhhCCCCCCC-CChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-CchhH
Q psy3292          26 FGWSSPVLAYLVSPDSPVP-MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-WSSPV  102 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-~~~~~  102 (213)
                      .+......+.+.+   +.+ .+.+..+.+.+...++=...-+..+++.+|+|.|+++.++.+...+-+ ..+.. ++.+.
T Consensus       223 ~~~~~~f~~~yl~---~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~  299 (400)
T PF03825_consen  223 HAAYYTFFSIYLQ---ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF  299 (400)
T ss_pred             HHHHHHHHHHHHH---HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            3333444455555   555 566667777777777777888899999999999999999999999999 88777 44333


Q ss_pred             HHH----------------------hcCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         103 LAY----------------------LVSPDSPVPMSEDESSWVVAS-MEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       103 l~~----------------------~~~~~~~~~~~~~~~~~~~~~-~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..+                      ...+..|...+....+.+..+ .++|..+|.+++|++.|++|-+..+....+.
T Consensus       300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~  377 (400)
T PF03825_consen  300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF  377 (400)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            211                      234455666666666776654 6899999999999999999988766554444

>KOG4686|consensus

Probab=98.15  E-value=1.3e-05  Score=62.68  Aligned_cols=109  Identities=15%  Similarity=0.213  Sum_probs=82.8

Q ss_pred             hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcC--chhHHHH-----
Q psy3292          35 YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGW--SSPVLAY-----  105 (213)
Q Consensus        35 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~--~~~~l~~-----  105 (213)
                      .+++   .+++|+.+.+.+.+....-.++.+++.|.++||+||+.....+.++..+..  ...|+.  .+..+..     
T Consensus       290 fF~~---rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  290 FFQK---RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHH---hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhH
Confidence            5566   889999999999999999999999999999999999988877777766655  444442  2222222     


Q ss_pred             ---------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292         106 ---------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus       106 ---------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                               ......|++.-.+..+.+.++.++|.++-++++|.++|.-|
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence                     22223444455556688999999999999999999999866

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.14  E-value=3.8e-05  Score=64.85  Aligned_cols=114  Identities=11%  Similarity=0.024  Sum_probs=78.4

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh--cC--chhHHHH
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF--GW--SSPVLAY  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~--~~--~~~~l~~  105 (213)
                      ...|.+.+  ..++.++.+.++......++..++.++.|++.||+|||+.+..+..+..++. ...+  .+  +.+....
T Consensus       276 ~~~p~~~~--~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (485)
T TIGR00711       276 YLLPLYLQ--QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL  353 (485)
T ss_pred             HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            34565543  1467899999999999999999999999999999999999988888877777 5542  22  2222111


Q ss_pred             ------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292         106 ------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus       106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                                        ......|........+.......+|..+|+.+.+.+.++..
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~  412 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT  412 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              11122233333334455666677888889888888887533

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.13  E-value=2e-05  Score=65.12  Aligned_cols=150  Identities=19%  Similarity=0.162  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHHH-HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           4 GTTRQILAGMSATL-SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         4 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      +.++.|...+.... ..+-+.+|++..... ..+-+   +.+.++...|.+.+...+.=.+.-.+.+++.+|+|.|+.++
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~-~~~f~---~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll  293 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYF-ASFFQ---SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL  293 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence            34455554443333 345566776633222 22222   33456677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHH
Q psy3292          83 STATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLC  142 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~  142 (213)
                      ++.+++.+-. .++++++.+.+..                  ......|..+..+.... .....++|..+.+.++|.+-
T Consensus       294 lag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly  373 (412)
T PF01306_consen  294 LAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY  373 (412)
T ss_dssp             HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence            9999999999 9999999887655                  11222222222221111 12235778888999999999


Q ss_pred             hHhccchhhhhhccc
Q psy3292         143 DRIGRKWTLLSTGML  157 (213)
Q Consensus       143 ~~~g~~~~~~~~~~~  157 (213)
                      |++|.+.++++.+.+
T Consensus       374 d~~G~~~tylimg~i  388 (412)
T PF01306_consen  374 DRIGFQHTYLIMGLI  388 (412)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhcCcHHHHHHHHHH
Confidence            999999888776655

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.12  E-value=7.1e-05  Score=62.31  Aligned_cols=112  Identities=12%  Similarity=0.044  Sum_probs=73.2

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----  105 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----  105 (213)
                      ..++.+.+ +...+.++...+...+.+..+..+|.++.+++.||+++|+.+.++.....+.. ...+.++...+..    
T Consensus       253 s~l~~y~~-~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~  331 (410)
T TIGR00885       253 TFIIQYAV-RLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLC  331 (410)
T ss_pred             HHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34455544 11224455555666777778889999999999999999999988888888887 7666655433322    


Q ss_pred             -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                                   ......+.+..........  ..+|.+++|++.|++.|+.
T Consensus       332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHHHh
Confidence                         1122222222222223333  3389999999999999976

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.09  E-value=7e-05  Score=61.94  Aligned_cols=128  Identities=13%  Similarity=0.041  Sum_probs=79.7

Q ss_pred             cccchhhhhhhhCCCCC-CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH--HH--Hhhh----
Q psy3292          26 FGWSSPVLAYLVSPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF--SV--GQTF----   96 (213)
Q Consensus        26 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~--~~--~~~~----   96 (213)
                      .+...|..|.+.+   + .|+++++.|.+.++..+..++.+++.|.++||+|.||-++.......+  +.  ...+    
T Consensus        23 ~gi~~pF~~iWL~---~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll   99 (412)
T PF01306_consen   23 WGIFLPFFPIWLT---QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL   99 (412)
T ss_dssp             HHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHc---cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666654   4 689999999999999999999999999999999976655444333221  22  2122    


Q ss_pred             cCchhHHHHhcCC----CCCC-------C------CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292          97 GWSSPVLAYLVSP----DSPV-------P------MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus        97 ~~~~~~l~~~~~~----~~~~-------~------~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..|...-.+....    ..+.       +      ...-+.|..+...++|.+++..++|.+.+. +.+..+++.+..
T Consensus       100 ~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~  176 (412)
T PF01306_consen  100 QSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAA  176 (412)
T ss_dssp             HTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHH
Confidence            2333222211111    1110       0      012234888899999999999999999874 556777766554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.08  E-value=0.00026  Score=59.19  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=42.9

Q ss_pred             hhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292          32 VLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS   88 (213)
Q Consensus        32 ~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~   88 (213)
                      ..|.+. +   +.+.+..+.+...+...++..+++++.|+++||+|||+.+.+...+.
T Consensus       265 ~lp~~l~~---~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        265 YMQKYLVN---TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            345543 4   46788888888888888888899999999999999999877765543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.07  E-value=9.4e-05  Score=69.10  Aligned_cols=102  Identities=13%  Similarity=0.001  Sum_probs=72.2

Q ss_pred             CCCCChh-hHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------
Q psy3292          42 PVPMSED-ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------  105 (213)
Q Consensus        42 ~~~~s~~-~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------  105 (213)
                      .++.+.. +.+++.+...++.++++++.|++.||+++++.+.++.+...++. ...+..+.+.+.+              
T Consensus       262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (1146)
T PRK08633        262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV  341 (1146)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            5678888 99999999999999999999999999999988888877777777 6666655544332              


Q ss_pred             ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292         106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus       106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                          ......|...+....+....+..+|..+++.+++.+..
T Consensus       342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11222333344444455666666777767666665543

>PRK09848 glucuronide transporter; Provisional

Probab=98.06  E-value=0.00014  Score=61.18  Aligned_cols=107  Identities=17%  Similarity=0.003  Sum_probs=68.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH-------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY-------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~-------------  105 (213)
                      .++.++...++......++..++.++.+++.||+|+|+.+.++..+..++. ...+.+  +.+.+..             
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~  337 (448)
T PRK09848        258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM  337 (448)
T ss_pred             ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            345555555554555567788899999999999999999999988888777 655543  3332221             


Q ss_pred             -----hcCCCCCCC--C-----CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292         106 -----LVSPDSPVP--M-----SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus       106 -----~~~~~~~~~--~-----~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                           +..+..|..  .     .....+.......+|..+|+.+.+.+.+..|++
T Consensus       338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~  392 (448)
T PRK09848        338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI  392 (448)
T ss_pred             HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                 111222211  1     111224445556788888888888888887764

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.06  E-value=0.00026  Score=59.36  Aligned_cols=121  Identities=15%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             chhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH
Q psy3292          29 SSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY  105 (213)
Q Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~  105 (213)
                      .+.....|.+  +..+.++.+..+.......+.+++.++..++++|+|+|+++.++.++..++. ...+.+  +.....+
T Consensus       255 ~~s~~~yy~~--y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~  332 (467)
T COG2211         255 RGSIMVYYVT--YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVV  332 (467)
T ss_pred             HhhhhheeEE--EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence            3344444442  3456677778888888888889999999999999999999999999999999 766665  3333333


Q ss_pred             ------------------hcCCCC--CCCCCcc-hhhH----HHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292         106 ------------------LVSPDS--PVPMSED-ESSW----VVASMEFGCWAIPFFAGMLCDRIGRKWTL  151 (213)
Q Consensus       106 ------------------~~~~~~--~~~~~~~-~~~~----~~~~~~lg~~~g~~~~g~l~~~~g~~~~~  151 (213)
                                        +..+..  +++.+.. ..|.    .....-+|.+++..+.|++.+..|.....
T Consensus       333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~  403 (467)
T COG2211         333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNV  403 (467)
T ss_pred             HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence                              111111  1111211 2233    33344568889999999999988875443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.01  E-value=8.1e-05  Score=63.46  Aligned_cols=103  Identities=17%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh---cCchhHHHH------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF---GWSSPVLAY------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~---~~~~~~l~~------------  105 (213)
                      .++.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++. ....   .++.+....            
T Consensus       289 v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~  368 (495)
T PRK14995        289 VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASA  368 (495)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHH
Confidence            468899999999999999999999999999999999999888887776666 4432   123322221            


Q ss_pred             ------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292         106 ------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus       106 ------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                            ......|........+......++|..+|+.+.|.+.+.
T Consensus       369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        369 LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  111223333444445666677789999999999888764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.97  E-value=0.00021  Score=58.26  Aligned_cols=54  Identities=19%  Similarity=0.014  Sum_probs=46.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT   95 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~   95 (213)
                      +++.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++. ...
T Consensus       236 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       236 IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999888777766665 443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.95  E-value=0.00024  Score=60.22  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=67.6

Q ss_pred             ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh-----cCchhHHHH--------------
Q psy3292          46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF-----GWSSPVLAY--------------  105 (213)
Q Consensus        46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~-----~~~~~~l~~--------------  105 (213)
                      +++..+.+.+...++..++.++.++++||+|+|+.+..+..+..++. ....     ..+.+.+.+              
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777778899999999999999999999988877666555 3321     222232222              


Q ss_pred             ----hcCCCCCC--CCCcc-----hhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292         106 ----LVSPDSPV--PMSED-----ESSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus       106 ----~~~~~~~~--~~~~~-----~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                          +..+..+.  +.++.     ..+.......+|..+++.+.|++.+..|.+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                12222221  11222     224444456678899999999999988874

>KOG2325|consensus

Probab=97.92  E-value=4.1e-05  Score=64.32  Aligned_cols=87  Identities=14%  Similarity=0.104  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHH
Q psy3292           7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTA   85 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~   85 (213)
                      ..|....++.+..+..+.+.++..+..-.|.+ +-|.+.+++..|++.++..+|.+++++..|.++.|.|+ |+.++.+.
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~-~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQ-KLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecchhhh-hcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            44555666667788888888888877755555 33467888999999999999999999999999999997 88888899


Q ss_pred             HHHHHHH-Hh
Q psy3292          86 TLSAFSV-GQ   94 (213)
Q Consensus        86 ~~~~~~~-~~   94 (213)
                      ++..+++ +.
T Consensus       110 ii~~~g~llY  119 (488)
T KOG2325|consen  110 LIAIIGNLLY  119 (488)
T ss_pred             HHHHHHHHHH
Confidence            9999988 65

>TIGR00788 fbt folate/biopterin transporter

Probab=97.85  E-value=0.00018  Score=61.05  Aligned_cols=105  Identities=12%  Similarity=0.015  Sum_probs=83.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc----------CchhHHHH-----
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG----------WSSPVLAY-----  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~----------~~~~~l~~-----  105 (213)
                      +.+.++.+.|...+...++..++....+.+.+|++.|+++.++.++..++. .....          ++.+....     
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            689999999999999999999999999999999999999999998888766 43211          11111000     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                                   ......|........+...++.++|..+++.+++.+.+.+|
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                         33445666667777889999999999999999999999988

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.83  E-value=0.00062  Score=56.32  Aligned_cols=114  Identities=10%  Similarity=-0.020  Sum_probs=73.0

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------------  105 (213)
                      .++.++.+.+.+.+...+|..+|++..+++.||.++|+.+..+..+ .+.. ...+.++.+....               
T Consensus       235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~  313 (393)
T PRK11195        235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVP  313 (393)
T ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence            5688999999999999999999999999999999998877776533 3333 4444444432211               


Q ss_pred             ---hcCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ---LVSPDSPVPM-SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ---~~~~~~~~~~-~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                         ...+..|... .....+......+++..++..+.+. .+.+|-+..+.+....
T Consensus       314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  368 (393)
T PRK11195        314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFG  368 (393)
T ss_pred             HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHH
Confidence               0111111111 1222234455566777777777764 4677888777665444

>PRK09669 putative symporter YagG; Provisional

Probab=97.81  E-value=0.0012  Score=55.40  Aligned_cols=102  Identities=9%  Similarity=-0.092  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hhhhc-CchhHHHH------------------
Q psy3292          47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFG-WSSPVLAY------------------  105 (213)
Q Consensus        47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~-~~~~~l~~------------------  105 (213)
                      ++..+.+.....+...++.++.++++||+|+|+.+..+.....+..  ..... .+.+.+.+                  
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444556666678888999999999999999999988776655433  22222 23332222                  


Q ss_pred             hcCCCCC--CCCC-cch----hhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292         106 LVSPDSP--VPMS-EDE----SSWVVASMEFGCWAIPFFAGMLCDRIGRK  148 (213)
Q Consensus       106 ~~~~~~~--~~~~-~~~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~  148 (213)
                      +..+..+  +..+ +..    .+.......+|..+|+.++|.+.+..|.+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            2222222  1111 112    24444556789999999999999998875

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.80  E-value=0.00021  Score=58.56  Aligned_cols=119  Identities=21%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             hhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-------chhH
Q psy3292          32 VLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-------SSPV  102 (213)
Q Consensus        32 ~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-------~~~~  102 (213)
                      .+| .+++   +++.++.+.+...+.+.+-..+..+..|+++||+|.+++.+.....+.+.. ......       +...
T Consensus       240 ~l~~~~~~---~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~  316 (417)
T COG2223         240 YLPMYLVT---QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV  316 (417)
T ss_pred             HHHHHHHH---hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence            344 4455   788999999999999999999999999999999999999999998888888 666553       2221


Q ss_pred             HHH-------h-------cCCCCCCCCCcc---hhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhh
Q psy3292         103 LAY-------L-------VSPDSPVPMSED---ESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS  153 (213)
Q Consensus       103 l~~-------~-------~~~~~~~~~~~~---~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~  153 (213)
                      ...       .       .-...|.+.+++   ..+.+..+..+|+..-|...+...+..| +...+++
T Consensus       317 ~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~  385 (417)
T COG2223         317 FVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFML  385 (417)
T ss_pred             HHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHH
Confidence            111       0       111223322222   2355666667777777888888888887 4444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.79  E-value=0.00036  Score=58.35  Aligned_cols=121  Identities=15%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHH
Q psy3292          27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVL  103 (213)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l  103 (213)
                      .......+.+.+   +.-.++...+.......++..++.+++++++||+|+|+++..+..+..++. ...+.+  |.+.+
T Consensus       242 ~~~~~~~~y~~~---~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (428)
T PF13347_consen  242 ALMNTFLPYYFT---YVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLV  318 (428)
T ss_pred             hhhhhHHHHHHH---HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHH
Confidence            333444455544   222233677888889999999999999999999999999999999999988 766665  65555


Q ss_pred             HH------------------hcCCCCCCC---CCcchhhHHHH----HHHHHHHHHHHHHHHHHhHhccchh
Q psy3292         104 AY------------------LVSPDSPVP---MSEDESSWVVA----SMEFGCWAIPFFAGMLCDRIGRKWT  150 (213)
Q Consensus       104 ~~------------------~~~~~~~~~---~~~~~~~~~~~----~~~lg~~~g~~~~g~l~~~~g~~~~  150 (213)
                      .+                  +..+..+..   ..+...+.+.+    ...++..+++.+.+.+.+..|.+..
T Consensus       319 ~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~  390 (428)
T PF13347_consen  319 LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDAN  390 (428)
T ss_pred             HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCC
Confidence            44                  111111111   11122344444    4566888888888888888776543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.77  E-value=0.0003  Score=65.90  Aligned_cols=120  Identities=13%  Similarity=-0.000  Sum_probs=79.8

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-------------
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-------------   97 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-------------   97 (213)
                      ..|.+.+  ..++.++.+.+++.+.+.+|.++|+++.|.+.|+.++++.+..+.++..+.. ...+.             
T Consensus       247 ~~p~~~~--~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  324 (1140)
T PRK06814        247 QLPLLAK--ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS  324 (1140)
T ss_pred             HhHHHHH--HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence            3455543  1468899999999999999999999999999998887766555554444433 33332             


Q ss_pred             -------CchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH-hccchhh
Q psy3292          98 -------WSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTL  151 (213)
Q Consensus        98 -------~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~-~g~~~~~  151 (213)
                             .+.+.+.+                  ......|........+.......+|..+|+++.+.+.+. .+....+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~  404 (1140)
T PRK06814        325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII  404 (1140)
T ss_pred             hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence                   33332222                  223444555556666777778888899999998888753 3444444


Q ss_pred             hh
Q psy3292         152 LS  153 (213)
Q Consensus       152 ~~  153 (213)
                      ++
T Consensus       405 ~~  406 (1140)
T PRK06814        405 LF  406 (1140)
T ss_pred             HH
Confidence            43

>TIGR00901 2A0125 AmpG-related permease

Probab=97.77  E-value=0.0002  Score=58.15  Aligned_cols=64  Identities=14%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             hhhhhhhhCCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292          30 SPVLAYLVSPDSPVPMSEDESSWVVASME-FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF   96 (213)
Q Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~   96 (213)
                      ....|.+.+   +.+.++++.+.+.+... ++..++.++.|++.||+|||+.+..+.++..+.. ...+
T Consensus       229 ~~~~~~~l~---~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  294 (356)
T TIGR00901       229 TVLTTLFLL---DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666   57889999998887665 6788999999999999999999888887776665 4443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.75  E-value=0.00034  Score=57.54  Aligned_cols=133  Identities=12%  Similarity=0.033  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292          11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF   90 (213)
Q Consensus        11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~   90 (213)
                      ..++.+-..+.+|.+.-.. ...-.-.+   +++.+..+.........+.+..|+++.|++.||+|.|++++.+.++..+
T Consensus       255 ~~FLiA~~~~~DGv~til~-~~~~fg~~---~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~  330 (438)
T COG2270         255 VLFLIARFFYIDGVNTILA-MGGVFGAA---DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI  330 (438)
T ss_pred             HHHHHHHHHHHhhHHHHHH-HHHHHHHH---HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence            3444445556666554222 11222333   7899999999999999999999999999999999999999999999877


Q ss_pred             HH-HhhhcCch---hHHHH---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292          91 SV-GQTFGWSS---PVLAY---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR  147 (213)
Q Consensus        91 ~~-~~~~~~~~---~~l~~---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~  147 (213)
                      .. ...+....   +.+-.               ......|.....+..+.+.........+||++.+.+.+..|.
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            77 44443322   22211               122334444444455777777888899999999999988775

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.0004  Score=56.07  Aligned_cols=136  Identities=14%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-hhHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS   83 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-rr~~~~~   83 (213)
                      ++..|.+++...+-++.+....+|    +|.+..   |.+.|+.+.|++.+...+.....++....+++|.. +|+....
T Consensus       207 ~~~aW~vtLfmGlqS~~~Y~~~~W----LP~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~  279 (395)
T COG2807         207 SPLAWQVTLFMGLQSLLYYIVIGW----LPAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL  279 (395)
T ss_pred             CchhHHHHHHHHhhHHHHHHHHHH----HHHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            455677777776666665444444    466666   78999999999999999999999999999999755 5777777


Q ss_pred             HHHHHHHHH-HhhhcCchhH-HH-H----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292          84 TATLSAFSV-GQTFGWSSPV-LA-Y----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~-l~-~----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                      ...++.++. ...+.+.... +. .                ......+......-.++.++...+=..+||.+.|++-|.
T Consensus       280 ~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa  359 (395)
T COG2807         280 ALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA  359 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence            777788888 6666554322 11 1                111111222222223555565556667799999999999


Q ss_pred             hcc
Q psy3292         145 IGR  147 (213)
Q Consensus       145 ~g~  147 (213)
                      .|.
T Consensus       360 ~gs  362 (395)
T COG2807         360 TGS  362 (395)
T ss_pred             cCC
Confidence            863

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.63  E-value=0.0012  Score=53.81  Aligned_cols=49  Identities=10%  Similarity=-0.002  Sum_probs=43.3

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF   90 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~   90 (213)
                      .++.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus       224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999998887765433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.001  Score=54.51  Aligned_cols=126  Identities=17%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-
Q psy3292          28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-  105 (213)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-  105 (213)
                      ..+..++.+.+ + ..+.++.+.+...+.+..+.++|.+....+.+|+...|.+.+.+++..+.+ ..++..+...+.. 
T Consensus       254 a~gsfl~~y~~-~-~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l  331 (422)
T COG0738         254 AIGSFLVSYLE-E-LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYAL  331 (422)
T ss_pred             HHHHHHHHHHH-h-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            33455566655 1 278899999999999999999999999999999999999888888877777 7777777665544 


Q ss_pred             ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                      ......| ..++ ..+....+..+|+++-|.+.|++.|+.|-...+....++
T Consensus       332 ~~ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pll  397 (422)
T COG0738         332 FLIGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLL  397 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                            2223333 2222 223344455679999999999999999987776643434

>PRK11462 putative transporter; Provisional

Probab=97.59  E-value=0.0031  Score=53.37  Aligned_cols=103  Identities=12%  Similarity=-0.060  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCch-h-HHHH------------------
Q psy3292          47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSS-P-VLAY------------------  105 (213)
Q Consensus        47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~-~-~l~~------------------  105 (213)
                      +...+.+...+.++..++.++.++++||+|+|+.+..+.....+.. ...+.++. . .+.+                  
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677788888999999999999999999988765544433333 22222111 1 1111                  


Q ss_pred             hcCCCCC--CCCC-cchh----hHHHHHHHHHHHHHHHHHHHHHhHhccch
Q psy3292         106 LVSPDSP--VPMS-EDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKW  149 (213)
Q Consensus       106 ~~~~~~~--~~~~-~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~  149 (213)
                      +..+..+  .+.+ +...    +.......+|..+|+.+.|.+.+..|.+.
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~  392 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA  392 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            1111111  1111 1122    33334567799999999999988877753

>KOG2816|consensus

Probab=97.57  E-value=0.0021  Score=54.35  Aligned_cols=119  Identities=15%  Similarity=0.025  Sum_probs=76.9

Q ss_pred             HHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-------------hcCCCCCCC---CCcch
Q psy3292          57 MEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------------LVSPDSPVP---MSEDE  119 (213)
Q Consensus        57 ~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------------~~~~~~~~~---~~~~~  119 (213)
                      ..+...+.+...|-++|++|||..+....+...+.. ...+.. ++.+..             ......+..   .+...
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~  149 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSS  149 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhhhcccccchhhhhhhhhhheeeccchhHHHHH
Confidence            356778899999999999999999999999988888 655555 222212             111111211   12223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292         120 SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT  182 (213)
Q Consensus       120 ~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~  182 (213)
                      .+.....+..+..+++.+++.+.+..|.-..+.+.....+      ....+..+++||+..--
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~------~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGI------LSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHH------HHHHHHhhccccccCcc
Confidence            3666666778889999999999988777666666655521      22233445557765433

>KOG0253|consensus

Probab=97.56  E-value=0.0015  Score=53.28  Aligned_cols=82  Identities=15%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             HHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--CchhHHHH----------------hcCCCCCCCCCc
Q psy3292          57 MEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WSSPVLAY----------------LVSPDSPVPMSE  117 (213)
Q Consensus        57 ~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~~~~l~~----------------~~~~~~~~~~~~  117 (213)
                      ..+.-.-|.++.+.+.||+|||+++-.+.+++.+.. ....+  +|......                ...+..|...+.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            345567899999999999999999999999988888 55544  33332222                334555666666


Q ss_pred             chhhHHHHHHHHHHHHHHHHH
Q psy3292         118 DESSWVVASMEFGCWAIPFFA  138 (213)
Q Consensus       118 ~~~~~~~~~~~lg~~~g~~~~  138 (213)
                      ...|...++.-+|+.+.|+++
T Consensus       470 tgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH
Confidence            667888888999999999887

>KOG3762|consensus

Probab=97.54  E-value=3.2e-05  Score=65.12  Aligned_cols=139  Identities=15%  Similarity=0.113  Sum_probs=108.6

Q ss_pred             HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292          19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~   97 (213)
                      .+..|.-.+.....+-...|   |.+..+...|.....-..|=+..-++.+++.+|+|+-+++.++..++.+-. ..+..
T Consensus       380 av~mG~g~~lv~tFLfWHle---d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L  456 (618)
T KOG3762|consen  380 AVVMGAGVGLVFTFLFWHLE---DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL  456 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence            33333333333333444455   677778888877777777778888899999999999999999999999999 88888


Q ss_pred             CchhHHHH------------------hcCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292          98 WSSPVLAY------------------LVSPDSPVPMSEDESSWVVAS-MEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC  158 (213)
Q Consensus        98 ~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~-~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~  158 (213)
                      +|.|+.+.                  ..+...|...+....+.+... ..+|-.+|++++|.+.+++|-|..|.+.++.|
T Consensus       457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc  536 (618)
T KOG3762|consen  457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC  536 (618)
T ss_pred             cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence            88887544                  456677888888877777765 68899999999999999999999999888886


Q ss_pred             hh
Q psy3292         159 DR  160 (213)
Q Consensus       159 ~~  160 (213)
                      +.
T Consensus       537 l~  538 (618)
T KOG3762|consen  537 LV  538 (618)
T ss_pred             HH
Confidence            53

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.52  E-value=0.00046  Score=58.26  Aligned_cols=46  Identities=22%  Similarity=0.298  Sum_probs=37.8

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK   78 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr   78 (213)
                      ...|.+.+  +.++.+..+.++..++..++..++.++.|+++||+++|
T Consensus       282 ~~lp~~l~--~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       282 TYLPTFIS--WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHH--HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34565543  15688999999999999999999999999999998765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.52  E-value=0.00036  Score=56.02  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             chhhhhhh-hCCCCCCCCC-hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292          29 SSPVLAYL-VSPDSPVPMS-EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF   96 (213)
Q Consensus        29 ~~~~~~~~-~~~~~~~~~s-~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~   96 (213)
                      .....|.+ .+   +++.+ +.+.+...+...++..++.++.|++.||+|+|+..........+.. ....
T Consensus       225 ~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (352)
T PF07690_consen  225 FSFFLPLYLQE---VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL  292 (352)
T ss_dssp             HHHHHHHHCCH---HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccchhhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            44555665 55   56677 7899999999999999999999999999998877777776666655 4433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.47  E-value=0.0015  Score=55.24  Aligned_cols=39  Identities=15%  Similarity=0.014  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292          54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV   92 (213)
Q Consensus        54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~   92 (213)
                      ..+..+...+..++.|+++||+|+|+++.++.....+..
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            334456778888999999999999999988887665554

>KOG3764|consensus

Probab=97.43  E-value=0.00013  Score=59.44  Aligned_cols=131  Identities=18%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             cccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH-HhhhcCchh
Q psy3292          26 FGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV-GQTFGWSSP  101 (213)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~-~~~~~~~~~  101 (213)
                      .+..=|.++.+ .|   .+..+..+.+...--..+...+|+.+.|.++||++  |-.....+.+...+.. ..-+++++.
T Consensus       286 lafLePtlslwm~e---~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~  362 (464)
T KOG3764|consen  286 LAFLEPTLSLWMLE---TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA  362 (464)
T ss_pred             HHHhCcccHHHHHH---hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH
Confidence            44444555553 33   44544557777777777888999999999999999  5444445555555555 667788877


Q ss_pred             HHHH------------------hcCC------CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         102 VLAY------------------LVSP------DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       102 ~l~~------------------~~~~------~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+.+                  ....      ...........+.....+.+|.++||.++|.+.+++|.+|...+..+.
T Consensus       363 ~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~  442 (464)
T KOG3764|consen  363 QLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGIL  442 (464)
T ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHH
Confidence            7666                  0001      111112334456677778999999999999999999999998877777


Q ss_pred             ch
Q psy3292         158 CD  159 (213)
Q Consensus       158 ~~  159 (213)
                      ++
T Consensus       443 n~  444 (464)
T KOG3764|consen  443 NL  444 (464)
T ss_pred             HH
Confidence            54

>PRK11043 putative transporter; Provisional

Probab=97.40  E-value=0.0075  Score=49.76  Aligned_cols=108  Identities=11%  Similarity=0.021  Sum_probs=66.4

Q ss_pred             hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H---hhh--cCchhHHHH-
Q psy3292          33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G---QTF--GWSSPVLAY-  105 (213)
Q Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~---~~~--~~~~~~l~~-  105 (213)
                      .|.+.+   +.+.++.+.++......++..+|.+..+++.||+|+|+..........+.. .   ...  .++...... 
T Consensus       226 ~p~~~~---~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        226 SPFILE---QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             hHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            466666   678899999998888888999999999999999999887654444333322 1   111  222221111 


Q ss_pred             -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292         106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus       106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                                       ...+..| ..+....+...+....+...++.+.|.+.|.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence                             0111122 2334444666666566666777777777664

>PRK09669 putative symporter YagG; Provisional

Probab=97.28  E-value=0.0013  Score=55.31  Aligned_cols=63  Identities=14%  Similarity=0.010  Sum_probs=48.8

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHH-HHHHHHHHHHHH-Hhhhc
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWT-LLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~-~~~~~   97 (213)
                      ..+.+.+   .+++++.+.+.+.++.-+...+..++.|.++||    +||||. ++.+.....+.. .....
T Consensus        32 l~~~~t~---~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~  100 (444)
T PRK09669         32 LAYFYTD---VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT  100 (444)
T ss_pred             HHHHHHH---hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC
Confidence            3456666   789999999999999999999999999999999    787555 445555555555 44333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.27  E-value=0.0039  Score=48.17  Aligned_cols=75  Identities=24%  Similarity=0.290  Sum_probs=55.9

Q ss_pred             hhcccccchhhhhhhhCCCCCCCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC
Q psy3292          22 VGQTFGWSSPVLAYLVSPDSPVPMSE--DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW   98 (213)
Q Consensus        22 ~g~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~   98 (213)
                      .+++.+...+..+.+.+   +.+.+.  ...++..+.+.++..+++++.|.++||+|||+.+..+......+. ...+..
T Consensus        14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T COG0477          14 LGLDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP   90 (338)
T ss_pred             HHHhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence            33556666666776666   444454  578999999999999999999999999999988887776555555 555554


Q ss_pred             c
Q psy3292          99 S   99 (213)
Q Consensus        99 ~   99 (213)
                      +
T Consensus        91 ~   91 (338)
T COG0477          91 N   91 (338)
T ss_pred             c
Confidence            4

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.22  E-value=0.0013  Score=53.35  Aligned_cols=54  Identities=15%  Similarity=0.025  Sum_probs=45.2

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT   95 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~   95 (213)
                      .++.++.+.+.+.+...+...++.++.|+++||+|||+.+..+......+. ...
T Consensus       255 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       255 QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence            568889999999999999999999999999999999888777766655555 443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.20  E-value=0.011  Score=48.61  Aligned_cols=117  Identities=13%  Similarity=0.032  Sum_probs=65.4

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh---HHHHH-HHHHHHHHH-HhhhcCchhHHHH-
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK---WTLLS-TATLSAFSV-GQTFGWSSPVLAY-  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr---~~~~~-~~~~~~~~~-~~~~~~~~~~l~~-  105 (213)
                      -.|.+.+   +.+.+.. .+...++..+...++.   +.++||..||   +.... ......+.. ...+..+...... 
T Consensus       214 wlp~~L~---~~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  286 (368)
T TIGR00903       214 WLEAALR---PAGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF  286 (368)
T ss_pred             HHHHHHH---HCCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            3566666   4455543 5666666555555554   6677776543   33222 233333333 3333332222111 


Q ss_pred             -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                       ...+..|...+....+...+...+|...++++.+.+..  |-+..+...+.+
T Consensus       287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~  353 (368)
T TIGR00903       287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAIL  353 (368)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence                             23455566667777788999899999888888887773  545555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.20  E-value=0.007  Score=46.93  Aligned_cols=82  Identities=22%  Similarity=0.227  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292           9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS   88 (213)
Q Consensus         9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~   88 (213)
                      |.............|..+.. +..-|++++   .++.|.+|...+..+..+|..+| ++.|.+.|++|.+.++.++.+..
T Consensus         2 W~~l~a~~~v~~~~Gt~Y~F-s~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~   76 (250)
T PF06813_consen    2 WLSLVASIWVQLCSGTTYTF-SAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLG   76 (250)
T ss_pred             hhhHHHHHHHHHhcCcccch-hhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHH
Confidence            33333333344444433322 344578888   88999999999999999999875 88999999999999999999999


Q ss_pred             HHHH-Hhh
Q psy3292          89 AFSV-GQT   95 (213)
Q Consensus        89 ~~~~-~~~   95 (213)
                      .++. ...
T Consensus        77 ~~GY~~~~   84 (250)
T PF06813_consen   77 FVGYGLLW   84 (250)
T ss_pred             HHHHHHHH
Confidence            8888 544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.04  E-value=0.0072  Score=51.30  Aligned_cols=64  Identities=16%  Similarity=0.054  Sum_probs=48.6

Q ss_pred             cccchhhh-hhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhch-hHHHHHHHHHHHHHH
Q psy3292          26 FGWSSPVL-AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGR-KWTLLSTATLSAFSV   92 (213)
Q Consensus        26 ~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Gr-r~~~~~~~~~~~~~~   92 (213)
                      .+..++.+ ..+.+   ..++++...|.+..+.-+--++..++.|.++|    |+|| |+.++.+.....++.
T Consensus        22 ~~~~~~~l~~yyt~---v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         22 IGIVYMYLMYYYTD---VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             HHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            34444444 45555   67999999999999999999999999999999    5699 455555666666665

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.03  E-value=0.018  Score=50.88  Aligned_cols=128  Identities=13%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCch----
Q psy3292          27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSS----  100 (213)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~----  100 (213)
                      ++.....-.+.+   ..+.+++....+...+..-..+.++++|.++|+ +||++++.++.++..++. +.+++...    
T Consensus         5 Gm~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~   81 (654)
T TIGR00926         5 GMRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH   81 (654)
T ss_pred             ecHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            334444455555   578888989889999999999999999999996 999999999999999998 76654210    


Q ss_pred             ----hHHHH------------------hcCCCCCCCC---CcchhhHHHHHHHHHHHHHHHHHHHHHhHh-------ccc
Q psy3292         101 ----PVLAY------------------LVSPDSPVPM---SEDESSWVVASMEFGCWAIPFFAGMLCDRI-------GRK  148 (213)
Q Consensus       101 ----~~l~~------------------~~~~~~~~~~---~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-------g~~  148 (213)
                          ...+.                  ......+...   .+....+.....++|..++..+.+++.+.+       ||.
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~  161 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP  161 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence                00111                  0111111100   111124555567788888888888887554       466


Q ss_pred             hhhhhhccc
Q psy3292         149 WTLLSTGML  157 (213)
Q Consensus       149 ~~~~~~~~~  157 (213)
                      ..+.+.++.
T Consensus       162 ~aF~i~~i~  170 (654)
T TIGR00926       162 LAFGVPAIL  170 (654)
T ss_pred             HHHHHHHHH
Confidence            666655554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.02  E-value=0.00089  Score=55.97  Aligned_cols=63  Identities=19%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhchhHHHH-HHHHHHHHHH-Hhhhc
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGRKWTLL-STATLSAFSV-GQTFG   97 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Grr~~~~-~~~~~~~~~~-~~~~~   97 (213)
                      ..+.+.+   ..++++...+.+..+.-+-.++-.++.|.++|    |+|||+..+ ++.....++. .....
T Consensus        24 ~~~f~~~---~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~   92 (428)
T PF13347_consen   24 LLYFYTD---VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP   92 (428)
T ss_pred             HHHHHHH---HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence            3466666   67999999999999999999999999999999    899876655 5556666666 44444

>KOG0254|consensus

Probab=96.96  E-value=0.016  Score=49.80  Aligned_cols=46  Identities=20%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292          51 SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF   96 (213)
Q Consensus        51 ~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~   96 (213)
                      .+......+...++..+..++.||+|||+.++.+...+.++. +.+.
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~  378 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAV  378 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Confidence            445555556666777778999999999999999999988888 6553

>KOG2563|consensus

Probab=96.94  E-value=0.0073  Score=50.27  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      +..+++|.+.+..++-.++.++.---.+++......   -++ +.+...|+..++.+....-.++.-++.||+|-|.+.+
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            356788998888888888887665555555555544   344 8888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-Hhhhc
Q psy3292          83 STATLSAFSV-GQTFG   97 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~~   97 (213)
                      ++.....++. +-..+
T Consensus       114 lgt~ln~iGa~Ir~is  129 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLIS  129 (480)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999999 65544

>KOG3762|consensus

Probab=96.82  E-value=0.0016  Score=55.23  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             HHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hh
Q psy3292          17 LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQ   94 (213)
Q Consensus        17 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~   94 (213)
                      +-.+.++..++.+.|.++.+.+   ++++++.+.+.+...-.+-.+.+.+++|+++||+-+|+.++++..+..+..  ..
T Consensus        18 ~f~~~~~~~~g~l~pll~vy~k---QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll   94 (618)
T KOG3762|consen   18 LFYLFFGARFGSLFPLLAVYFK---QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLL   94 (618)
T ss_pred             eeeeeeeecccccchHHHHHHH---HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhe
Confidence            3456667778888888888888   899999999999999999999999999999999999888877777766555  44


Q ss_pred             hhc
Q psy3292          95 TFG   97 (213)
Q Consensus        95 ~~~   97 (213)
                      .+.
T Consensus        95 ~fv   97 (618)
T KOG3762|consen   95 VFV   97 (618)
T ss_pred             eec
Confidence            444

>KOG2532|consensus

Probab=96.79  E-value=0.0054  Score=51.98  Aligned_cols=143  Identities=14%  Similarity=0.091  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh---------HHHHH
Q psy3292          13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK---------WTLLS   83 (213)
Q Consensus        13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr---------~~~~~   83 (213)
                      ..+.++.+.+.+.........|.|.+  +-++.+..+.|++.++..+.+.+..++.|.++||.-+|         -.=.+
T Consensus       261 wai~~~~f~~~~~~~~l~~y~PtY~~--~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  261 WAIWISAFGGNWGFYLLLTYLPTYLK--EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHH--HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            33444555555555555566687754  15688999999999999999999999999999998552         11122


Q ss_pred             HHHHHHHHH-HhhhcCc-hh--HHHH------hcC-C-----CC----CCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-
Q psy3292          84 TATLSAFSV-GQTFGWS-SP--VLAY------LVS-P-----DS----PVPMSEDESSWVVASMEFGCWAIPFFAGMLC-  142 (213)
Q Consensus        84 ~~~~~~~~~-~~~~~~~-~~--~l~~------~~~-~-----~~----~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~-  142 (213)
                      +.....+.. ..++.++ ..  .+..      ... .     .+    .........+.......+...++|.+.|.+. 
T Consensus       339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            222233333 3444442 11  1111      000 0     01    1112222335555566778888888888888 


Q ss_pred             --hHhccchhhhhhccc
Q psy3292         143 --DRIGRKWTLLSTGML  157 (213)
Q Consensus       143 --~~~g~~~~~~~~~~~  157 (213)
                        ++-.|+++|++.+.+
T Consensus       419 ~~t~~eW~~VF~i~a~i  435 (466)
T KOG2532|consen  419 DNTREEWRIVFLIAAGI  435 (466)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence              356899999887766

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.78  E-value=0.049  Score=44.80  Aligned_cols=39  Identities=15%  Similarity=0.017  Sum_probs=33.4

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWT   80 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~   80 (213)
                      .++.++.+.++......++..+++++.+++.||++|+..
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  275 (394)
T PRK11652        237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW  275 (394)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888999999999999999999999999999985443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.65  E-value=0.026  Score=47.49  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=78.4

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-----hhHHHHHHHHHHHHHH-HhhhcCc----h
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-----RKWTLLSTATLSAFSV-GQTFGWS----S  100 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-----rr~~~~~~~~~~~~~~-~~~~~~~----~  100 (213)
                      ...|.+++   +++.++.+.....+...+-- ..-++.|.++|-+-     ||+-++++.++..++. ..+..+.    .
T Consensus        11 ~~~~~l~~---~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   11 AIYPFLKD---DLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHH---HcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            45578888   89999999998888777764 44567899999863     5666666776665555 4443222    2


Q ss_pred             hHHHH------------------hcCCC---CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         101 PVLAY------------------LVSPD---SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       101 ~~l~~------------------~~~~~---~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ....+                  ...+.   .|.. +....+.....-.+|..++..+.|.+.+..+.+..+.+.++.
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~  163 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL  163 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence            21111                  11111   1111 222234444556789999999999999999999988776555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0252|consensus

Probab=96.64  E-value=0.003  Score=52.71  Aligned_cols=117  Identities=15%  Similarity=-0.035  Sum_probs=77.2

Q ss_pred             HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhH-------HHH----------------hcCCCCCCC
Q psy3292          59 FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPV-------LAY----------------LVSPDSPVP  114 (213)
Q Consensus        59 ~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~-------l~~----------------~~~~~~~~~  114 (213)
                      .+...|.++..++.|++|||+..+-+.+++.+.. ..+..+|...       ++.                ...+..|..
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            3445588888899999999999999999999999 8888888311       000                122233333


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHh-----HhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292         115 MSEDESSWVVASMEFGCWAIPFFAGMLCD-----RIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT  182 (213)
Q Consensus       115 ~~~~~~~~~~~~~~lg~~~g~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~  182 (213)
                      ++...-+.-....-+|..+|.....++.+     ..|-++++++...+++.       -.+..+++||+..-.
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-------gi~~T~l~pEtk~~~  504 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-------GILFTLLIPETKGKS  504 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-------hHheeEEeecccccC
Confidence            33333444444556788888888888888     67888888877766321       112233338887544

>KOG2533|consensus

Probab=96.63  E-value=0.02  Score=48.86  Aligned_cols=73  Identities=19%  Similarity=0.104  Sum_probs=53.1

Q ss_pred             HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHHHHHHHHHHHHHH
Q psy3292          18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWTLLSTATLSAFSV   92 (213)
Q Consensus        18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~~~~~~~~~~~~~   92 (213)
                      +.+.........+.-+|.+.+ + ..+.++.+.+.+...+.++.+++.+..|+++||    ..+|........+.....
T Consensus       281 ~~~~~~lv~~~~~~~lpl~l~-~-~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  281 CYFFLKLVNYGFSYWLPLYLK-S-NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             HHHHHhhccccHHHHHHHHHH-c-CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            333333334445566677776 1 356899999999999999999999999999999    677777666665544433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.60  E-value=0.07  Score=38.32  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=46.2

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHHHhhhcCchhHH
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVL  103 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~l  103 (213)
                      +++..+.+ +..-++++..-..-.++......+++++.+.+.+++|.|+.++++.+.+.+....-+-++.+.+
T Consensus        21 svi~s~~~-~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l   92 (156)
T PF05978_consen   21 SVIHSVHE-RNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTL   92 (156)
T ss_pred             HHHHHHhh-cCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34444444 2222344444444555666667788888999999999999999999998877722234444443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.03  E-value=0.67  Score=38.63  Aligned_cols=121  Identities=6%  Similarity=-0.099  Sum_probs=64.0

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh-----hcCchhHHHH
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT-----FGWSSPVLAY  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~  105 (213)
                      ..|.+.+  +..+.++.+.++.......+..+++.+.+.+.++.++++.......+..++. ...     ..++......
T Consensus       240 ~~P~~l~--~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~  317 (413)
T PRK15403        240 VSPVILI--DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVL  317 (413)
T ss_pred             hChHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            3465543  1457899999999888888888888888887655444443332222222222 221     1222211111


Q ss_pred             ---------------hc-CCCCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292         106 ---------------LV-SPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus       106 ---------------~~-~~~~~-~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                                     .. ....+ ....+...+........+...++..++++.+. +-+..+....
T Consensus       318 ~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~  383 (413)
T PRK15403        318 GTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLA  383 (413)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHH
Confidence                           00 00111 11234444556666666777777788877655 5455554433

>PRK11462 putative transporter; Provisional

Probab=95.90  E-value=0.062  Score=45.55  Aligned_cols=57  Identities=11%  Similarity=-0.034  Sum_probs=45.4

Q ss_pred             hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHHHH-HHHHHHHHHH
Q psy3292          33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWTLL-STATLSAFSV   92 (213)
Q Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~~~-~~~~~~~~~~   92 (213)
                      ...+.+   ..++++...|.+..+.-+--++.-++.|.++||    +|||+..+ ++.....++.
T Consensus        33 ~~fyt~---~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~   94 (460)
T PRK11462         33 MFFYTD---IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC   94 (460)
T ss_pred             HHHHHH---hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence            345555   779999999999999999999999999999995    79866554 4555666555

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.88  E-value=3.5e-05  Score=64.61  Aligned_cols=109  Identities=19%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh----hcCch------h
Q psy3292          33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT----FGWSS------P  101 (213)
Q Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~----~~~~~------~  101 (213)
                      .|.+.+   ..+.++.  -.......+...++.+...++.||+|||+.++.+.....+.. ..+    ..++.      .
T Consensus       276 ~~~i~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  276 SPSIFE---NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             cccccc---ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            355555   4444444  222223334455677777799999999999998888877777 553    11221      1


Q ss_pred             HHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292         102 VLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG  146 (213)
Q Consensus       102 ~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  146 (213)
                      .+..                  ...|..|...+....+.......++..+++.+...+.+..+
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~  413 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG  413 (451)
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1111                  11223333333333445555555666666666666666666

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.88  E-value=0.16  Score=43.20  Aligned_cols=47  Identities=17%  Similarity=0.106  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhch-----hHHH--HHHHHHHHHHH-Hhhh
Q psy3292          50 SSWVVASMEFGCWAIPFFAGMLCDRIGR-----KWTL--LSTATLSAFSV-GQTF   96 (213)
Q Consensus        50 ~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-----r~~~--~~~~~~~~~~~-~~~~   96 (213)
                      .+++.+...+...+.+++..++-.|.+|     +...  .++.++..++. ..++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~  368 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAA  368 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888776654444444     2333  56666666666 5543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.80  E-value=0.44  Score=39.74  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=69.6

Q ss_pred             CCCCChhhHH-HHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------
Q psy3292          42 PVPMSEDESS-WVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------  105 (213)
Q Consensus        42 ~~~~s~~~~~-~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------  105 (213)
                      +.++|+.|.. -+.-...-..++..++...++|..|.|+++++..+...+.. +..++++...+-+              
T Consensus        34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~eva  113 (412)
T PF01770_consen   34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVA  113 (412)
T ss_pred             ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            3788877764 34445556678888999999999999999999999999999 9999999877755              


Q ss_pred             ---hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292         106 ---LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus       106 ---~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                         ..-...|.....+..+..++...+|..++.+++-.+..
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               01111222222333456666666666666665544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.73  E-value=0.0027  Score=54.84  Aligned_cols=75  Identities=15%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh
Q psy3292          18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT   95 (213)
Q Consensus        18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~   95 (213)
                      ..+.+++..+.....+..+.+   .++++.++.|++.+.+-++..+..++..++.+|-.|-+.+-++.++..++. +.+
T Consensus        11 ~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen   11 LGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            344446777777777788877   899999999999999999999999999999999888777888888888887 665

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.57  E-value=0.33  Score=40.46  Aligned_cols=54  Identities=15%  Similarity=-0.020  Sum_probs=39.0

Q ss_pred             ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH-HHHHH-HhhhcCc
Q psy3292          46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL-SAFSV-GQTFGWS   99 (213)
Q Consensus        46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~-~~~~~-~~~~~~~   99 (213)
                      +.+..+...+...+-.++-++..|.++|+.|+||..+-.... ..++. ...+.++
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            345667777788888888999999999999976665555544 44444 6666665

>PRK09848 glucuronide transporter; Provisional

Probab=95.53  E-value=0.088  Score=44.27  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=43.8

Q ss_pred             hhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh----chhHHH-HHHHHHHHHHH
Q psy3292          34 AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI----GRKWTL-LSTATLSAFSV   92 (213)
Q Consensus        34 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~----Grr~~~-~~~~~~~~~~~   92 (213)
                      +.+.+   ..++++.+.|.+.+...+...+..++.|.++||.    |||+.. ..+.+...+..
T Consensus        33 ~y~~~---~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~   93 (448)
T PRK09848         33 SYYTD---VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS   93 (448)
T ss_pred             HHHHH---HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence            45555   6789999999999999999999999999999996    777655 44444343333

>KOG4686|consensus

Probab=95.43  E-value=0.014  Score=46.20  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHH
Q psy3292           7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTA   85 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~   85 (213)
                      ++..+....++-.|-.-+.+-.++..+.+++.   |.+++.+...++-+.+..=..+-+++.|++.|| +|-|..-++-+
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~  117 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC  117 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence            34455555555444444445555566677777   778888888888899998889999999999996 77776666666


Q ss_pred             HHHHHHH-Hhh---hcCchhHHHH------h-------cCCC-CCCCCCcch----hhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292          86 TLSAFSV-GQT---FGWSSPVLAY------L-------VSPD-SPVPMSEDE----SSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus        86 ~~~~~~~-~~~---~~~~~~~l~~------~-------~~~~-~~~~~~~~~----~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                      +...++- +.+   ....+|++..      +       .+.. ...+...++    .+...++..+|..+--.+.+++.|
T Consensus       118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            6666666 554   3456666655      1       1111 111223333    355666677788777777888888


Q ss_pred             Hhcc
Q psy3292         144 RIGR  147 (213)
Q Consensus       144 ~~g~  147 (213)
                      ..|+
T Consensus       198 ~~~~  201 (459)
T KOG4686|consen  198 TMGR  201 (459)
T ss_pred             HHHH
Confidence            7765

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.37  E-value=0.56  Score=40.26  Aligned_cols=96  Identities=11%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhhhhhh----HHhhhhhchhHHHHHHHHHHHHHH-HhhhcCch----------hHHHH---------
Q psy3292          50 SSWVVASMEFGCWAIPFFA----GMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSS----------PVLAY---------  105 (213)
Q Consensus        50 ~~~~~s~~~~g~~ig~~~~----g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~----------~~l~~---------  105 (213)
                      .+++.++..+...+..++.    +++.||++..+.+.++.++..++. ......++          +....         
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5566666665555555555    666666666677888888888888 65554432          22221         


Q ss_pred             hcCCC----CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292         106 LVSPD----SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI  145 (213)
Q Consensus       106 ~~~~~----~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~  145 (213)
                      ...+.    ......+...+...+.+.++..+|+.++|.+.+.+
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~  441 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM  441 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11110    01122344567777788888888888888887643

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.84  E-value=1.7  Score=36.20  Aligned_cols=103  Identities=20%  Similarity=0.056  Sum_probs=69.1

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh-hhchhHHHHHHHHHHHHHH-Hhhh---cCchhHHHH-----------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCD-RIGRKWTLLSTATLSAFSV-GQTF---GWSSPVLAY-----------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-~~Grr~~~~~~~~~~~~~~-~~~~---~~~~~~l~~-----------  105 (213)
                      -++.|..|...+++....|.++|-...|++.. |.++|++..+++....++. ...+   ..+.+.+..           
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~  317 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL  317 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence            67899999999999999999999999998887 6888888888888877777 5443   334344333           


Q ss_pred             -------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292         106 -------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus       106 -------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                             ...............+.......+...+|.+++|.+.|.
T Consensus       318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111111112223333444444555666677777777765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.80  E-value=0.25  Score=40.93  Aligned_cols=110  Identities=15%  Similarity=0.018  Sum_probs=68.2

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-----hhHHHHHHHHH-HHHHH-Hhh-----hcC-------chhH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-----RKWTLLSTATL-SAFSV-GQT-----FGW-------SSPV  102 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-----rr~~~~~~~~~-~~~~~-~~~-----~~~-------~~~~  102 (213)
                      |++++....+.+.++..+-.. ....+|+.+|+.+     ||..+++.... ...+. ...     .+.       +.+.
T Consensus         9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            567777888887777776654 5788899999888     77665544333 33322 222     122       1111


Q ss_pred             H-HH---------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhh
Q psy3292         103 L-AY---------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL  152 (213)
Q Consensus       103 l-~~---------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~  152 (213)
                      - ..                     +..+..|+..+....+..-.+..+|..++..+.|.+.|.++......
T Consensus        88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~  159 (403)
T PF03209_consen   88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ  159 (403)
T ss_pred             HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence            1 11                     33444455555555566667778899999999999988876655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.54  E-value=2  Score=34.44  Aligned_cols=44  Identities=18%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ..++.+.+...+.+..+..+|.++++.+.||+|.|.........
T Consensus       174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            45566667788888899999999999999999987766555443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0255|consensus

Probab=94.10  E-value=0.12  Score=44.42  Aligned_cols=65  Identities=23%  Similarity=0.076  Sum_probs=48.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHH----HHHHHHHHHHHHHHhhcC
Q psy3292         118 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS----TGMLCDRIGRKWTLLSTG  187 (213)
Q Consensus       118 ~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~es~~~~g~~~g  187 (213)
                      .......+.+.+|..+|+++.|.++|++|||.+++.+.+...   +..+...    +..+  -..|...|+..+
T Consensus       118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~---i~~~~~a~a~~~~~~--~~~Rfl~G~~~~  186 (521)
T KOG0255|consen  118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFI---IFGILTAFAPNYWMF--LIFRFLSGFFGS  186 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHH---HHHHHHHHhCcHHHH--HHHHHHHHhhcc
Confidence            344667788999999999999999999999999988887733   2333332    2345  788888887654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.00  E-value=0.21  Score=44.24  Aligned_cols=59  Identities=14%  Similarity=0.191  Sum_probs=45.1

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHH-HHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV   92 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~-g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~   92 (213)
                      ..|.+.+  ..++.++.+.+++.+...+ +..+|.++.|+++||++  .|+.+..+.+...++.
T Consensus       352 ~lP~yl~--~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       352 FLPKYLE--NQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHH--HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            4565543  1578999999999988776 67899999999999998  4567776666666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0637|consensus

Probab=93.87  E-value=0.029  Score=46.92  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhchhHHHHHHHHHH-HHHH-HhhhcCchhHHHH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGRKWTLLSTATLS-AFSV-GQTFGWSSPVLAY  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Grr~~~~~~~~~~-~~~~-~~~~~~~~~~l~~  105 (213)
                      ..+++....+.+.-+-.+...+.+++.|..+|    |+||||.++.+.... .++. +..++.+....+.
T Consensus        61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg  130 (498)
T KOG0637|consen   61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG  130 (498)
T ss_pred             HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence            47888888888888888888999999999999    599988877666554 4455 6666665554433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.64  E-value=2.2  Score=36.59  Aligned_cols=43  Identities=12%  Similarity=-0.005  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhchhHH-------HHHHHHHHHHHH
Q psy3292          50 SSWVVASMEFGCWAIPFFAGMLCDRIGRKWT-------LLSTATLSAFSV   92 (213)
Q Consensus        50 ~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~-------~~~~~~~~~~~~   92 (213)
                      .+++.+...+...+.+++.+++.||+|||+.       +.++.++..++.
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~  360 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGF  360 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHH
Confidence            4566667777777888889999999999862       445555544444

>KOG2563|consensus

Probab=93.63  E-value=0.56  Score=39.49  Aligned_cols=50  Identities=16%  Similarity=0.154  Sum_probs=38.8

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFS   91 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~   91 (213)
                      ..+.+....|+.......++++|+...|.+.||... |.+.........++
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            334455788999999999999999999999999876 55555555555555

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=93.54  E-value=2.4  Score=36.06  Aligned_cols=62  Identities=16%  Similarity=-0.001  Sum_probs=47.7

Q ss_pred             hhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHH-HHHHHHHHHHHH-HhhhcC
Q psy3292          34 AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWT-LLSTATLSAFSV-GQTFGW   98 (213)
Q Consensus        34 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~-~~~~~~   98 (213)
                      -.|.+   ..++++...|.+..+.=+--++.-++.|.+.||    +||+|. ++.+.+...+.. ++-.++
T Consensus        37 ~fYTd---v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p  104 (467)
T COG2211          37 FFYTD---VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP  104 (467)
T ss_pred             HHHhc---ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence            44555   789999999999999889999999999999995    887554 555556677666 555554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.48  E-value=0.58  Score=41.09  Aligned_cols=48  Identities=25%  Similarity=0.491  Sum_probs=38.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-Hhh
Q psy3292          48 DESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQT   95 (213)
Q Consensus        48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~   95 (213)
                      .+.++......+|..+|+.+.|.+..+++| |+.++.+.+++.++. .++
T Consensus       349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama  398 (599)
T PF06609_consen  349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA  398 (599)
T ss_pred             ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence            357888888999999999999999999988 666667777777665 443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.22  E-value=1.1  Score=37.76  Aligned_cols=104  Identities=9%  Similarity=-0.017  Sum_probs=77.6

Q ss_pred             CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh-hhcC--chh------HHHH--------
Q psy3292          44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ-TFGW--SSP------VLAY--------  105 (213)
Q Consensus        44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~-~~~~--~~~------~l~~--------  105 (213)
                      +.++...+.+.....++..+|..+......+..-|+++....++..+.. .. .+.+  |..      .+..        
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            4889999999988889999999999888888888888877777766554 21 1111  110      0000        


Q ss_pred             -----------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292         106 -----------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR  147 (213)
Q Consensus       106 -----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~  147 (213)
                                 +..+..|........+.+.++.++|..++..++..+.+.+|-
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v  383 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV  383 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                       455667777777777999999999999999999999988763

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3626|consensus

Probab=92.86  E-value=0.28  Score=43.76  Aligned_cols=82  Identities=17%  Similarity=0.202  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHH
Q psy3292          12 GMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFS   91 (213)
Q Consensus        12 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~   91 (213)
                      ..+.++..+.+++..+.....+..+-+   .++++.++.|++.+.+-+|..+...+..++..|..|-+.+-++++++.++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG  175 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence            344555666777777777777777766   88999999999999999999999999999999999988898999998888


Q ss_pred             H-Hhhh
Q psy3292          92 V-GQTF   96 (213)
Q Consensus        92 ~-~~~~   96 (213)
                      . +.++
T Consensus       176 sll~al  181 (735)
T KOG3626|consen  176 SLLFAL  181 (735)
T ss_pred             HHHHhC
Confidence            8 6664

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.84  E-value=0.45  Score=40.64  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             CCCCCcch-hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHH--HHHHHHHHHHHHHhhcC
Q psy3292         112 PVPMSEDE-SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLST--GMLCDRIGRKWTLLSTG  187 (213)
Q Consensus       112 ~~~~~~~~-~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~es~~~~g~~~g  187 (213)
                      ...+++.+ .+.+.+.+..+..+..+++|+++|++|.|+.+....+.   ..+.+.+..+  .+..+...|..+|+..|
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~---Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA  130 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS---FVCVWLLLLLGTSVWHMQLMEVFYSVTMA  130 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777 89999999999999999999999999999998877766   3334444322  24444788888888876

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=92.53  E-value=6.2  Score=33.85  Aligned_cols=45  Identities=11%  Similarity=-0.005  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-Hhh
Q psy3292          51 SWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQT   95 (213)
Q Consensus        51 ~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~   95 (213)
                      .+....+.+...+.+++..++.+|+|+ |++..++.++..++. ...
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~  354 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATV  354 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence            344555666666888899999999995 677677777776666 544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2816|consensus

Probab=92.37  E-value=2.2  Score=36.35  Aligned_cols=103  Identities=9%  Similarity=-0.039  Sum_probs=75.0

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhhhhhhhH-HhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-------------
Q psy3292          41 SPVPMSEDESSWVVASMEFGCWAIPFFAG-MLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------------  105 (213)
Q Consensus        41 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g-~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------------  105 (213)
                      ..++.++.+.+.+.+...+-..+++.+.. .+...+|-|+.+.++.....+.. ..+++++.|+++.             
T Consensus       270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~p  349 (463)
T KOG2816|consen  270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFP  349 (463)
T ss_pred             eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhH
Confidence            36788999999888888888888877777 78888999999999999999999 9999999998765             


Q ss_pred             ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292         106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD  143 (213)
Q Consensus       106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~  143 (213)
                          ..+...+.....+..++...+-.+...+++.+-+.+..
T Consensus       350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence                11222222333444455666666666666666665543

>PRK03612 spermidine synthase; Provisional

Probab=91.86  E-value=7  Score=33.93  Aligned_cols=114  Identities=21%  Similarity=0.150  Sum_probs=64.9

Q ss_pred             CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH--HHHHHH-Hh----hhcCchhHHHH--------hcC
Q psy3292          44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT--LSAFSV-GQ----TFGWSSPVLAY--------LVS  108 (213)
Q Consensus        44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~--~~~~~~-~~----~~~~~~~~l~~--------~~~  108 (213)
                      +-+....+.+.+++..|..+|+.+.+++.++.-|+....-..+  +..++. +.    .+.........        +..
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG  125 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688889999999999999999999988755444432221111  011111 11    11101111000        111


Q ss_pred             CCCCC--------C--CCcchhhHHHHHHHHHHHHHHHHHHHHH-hHhccchhhhhhccc
Q psy3292         109 PDSPV--------P--MSEDESSWVVASMEFGCWAIPFFAGMLC-DRIGRKWTLLSTGML  157 (213)
Q Consensus       109 ~~~~~--------~--~~~~~~~~~~~~~~lg~~~g~~~~g~l~-~~~g~~~~~~~~~~~  157 (213)
                      ...|.        .  ..+...+.+.+..++|..+|+++.+++. ..+|-..+.++.+.+
T Consensus       126 ~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l  185 (521)
T PRK03612        126 MEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            11111        1  1234567888899999999999988886 478876555544444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=91.76  E-value=4.8  Score=34.48  Aligned_cols=49  Identities=18%  Similarity=0.066  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH-HH-Hhhh
Q psy3292          48 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF-SV-GQTF   96 (213)
Q Consensus        48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~-~~-~~~~   96 (213)
                      +..++..++..+-..+-.++.|.++|+-|+||.++....+..+ .. ...+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~  120 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF  120 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH
Confidence            4456788888888899999999999999987776666555443 44 4444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG1330|consensus

Probab=91.50  E-value=0.53  Score=39.76  Aligned_cols=71  Identities=13%  Similarity=0.038  Sum_probs=50.1

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHH--HHHHHHHHHHHHhhc
Q psy3292         113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTG--MLCDRIGRKWTLLST  186 (213)
Q Consensus       113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~es~~~~g~~~  186 (213)
                      .+++....+.++....+...+..++.|+++|+++|++++.++..+   ..+..+...+.  .+....+|-+.|++.
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i---W~~Av~~~~fs~~Fwq~~l~R~~vGiGe  135 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI---WTLAVFASGFSNHFWQVLLCRGFVGIGE  135 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            356667778999999999999999999999999999998777655   33333332221  222266776666654

>KOG2615|consensus

Probab=91.08  E-value=0.96  Score=37.48  Aligned_cols=111  Identities=14%  Similarity=0.041  Sum_probs=78.7

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------
Q psy3292          41 SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------  105 (213)
Q Consensus        41 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------  105 (213)
                      ..++.++.+.|.+.+...+++++-+....+..||..  -+-.+..+..++.=.. ....++....+..            
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV  369 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999876  4544444444444333 4444444433322            


Q ss_pred             ------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh-ccchhh
Q psy3292         106 ------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTL  151 (213)
Q Consensus       106 ------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-g~~~~~  151 (213)
                            +.....|...+....|...+...++-++||.++|.+..+. +++..+
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~  422 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAY  422 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCcee
Confidence                  3444556666677778888889999999999999887663 444433

>KOG1237|consensus

Probab=90.20  E-value=8.6  Score=33.82  Aligned_cols=128  Identities=19%  Similarity=0.215  Sum_probs=84.3

Q ss_pred             ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292          27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLA  104 (213)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~  104 (213)
                      ++....+..+.+   +++.+...+.-..+.+..-....++..++++|. +||-+++.++.++..++. +...+.....+.
T Consensus        55 g~~~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~  131 (571)
T KOG1237|consen   55 GLVSNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL  131 (571)
T ss_pred             cchhHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            444555566666   677777888888888888888999999999996 789999999999988886 544332222111


Q ss_pred             ----------------------H---------------------hcCCCCCCCCCcc------hhhHHHHHHHHHHHHHH
Q psy3292         105 ----------------------Y---------------------LVSPDSPVPMSED------ESSWVVASMEFGCWAIP  135 (213)
Q Consensus       105 ----------------------~---------------------~~~~~~~~~~~~~------~~~~~~~~~~lg~~~g~  135 (213)
                                            +                     +.....+....+.      -..|.....+.|..+..
T Consensus       132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~  211 (571)
T KOG1237|consen  132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ  211 (571)
T ss_pred             CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence                                  1                     0111111000111      11555556677777777


Q ss_pred             HHHHHHHhHhccchhhhhhccc
Q psy3292         136 FFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       136 ~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+.-++-|..||...+-+....
T Consensus       212 t~~vyiq~~~~w~lgf~i~~~~  233 (571)
T KOG1237|consen  212 TVLVYIQDNVGWKLGFGIPTVL  233 (571)
T ss_pred             HHHHhhhhcccceeeccHHHHH
Confidence            7777777888999888766665

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=89.40  E-value=1.7  Score=37.31  Aligned_cols=44  Identities=14%  Similarity=0.376  Sum_probs=36.9

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh-ccchhhhhhccc
Q psy3292         114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTGML  157 (213)
Q Consensus       114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-g~~~~~~~~~~~  157 (213)
                      ..++.+.+...+.+.....++++++|+++|++ |+|..+.++.+.
T Consensus        41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462         41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            45666777788888888899999999999999 999988777666

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=89.34  E-value=1.8  Score=29.09  Aligned_cols=47  Identities=19%  Similarity=0.207  Sum_probs=36.7

Q ss_pred             ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292          46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV   92 (213)
Q Consensus        46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~   92 (213)
                      .....+.......++..+++...+.+.|+.|.+..+.+......+..
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF  131 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence            34556677778889999999999999999998887777666655554

>PTZ00207 hypothetical protein; Provisional

Probab=88.82  E-value=3  Score=36.78  Aligned_cols=51  Identities=8%  Similarity=0.004  Sum_probs=32.2

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHH
Q psy3292         114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLL  168 (213)
Q Consensus       114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~  168 (213)
                      ..+..+.++..+... ......++.|++.|++|+|.++.++.+.   ..+++++.
T Consensus        58 gls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll---~~iG~ll~  108 (591)
T PTZ00207         58 NLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTV---FCLGTLLF  108 (591)
T ss_pred             CcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHH---HHHHHHHH
Confidence            344445555554422 2233555789999999999999888777   33344444

>PF12832 MFS_1_like: MFS_1 like family

Probab=86.39  E-value=2  Score=26.78  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=36.1

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292         113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG  155 (213)
Q Consensus       113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~  155 (213)
                      ...+..+.+.+.++..+-..+++++.|.++|+.+++.......
T Consensus        30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            4567778899999999999999999999999999887765443

>KOG4332|consensus

Probab=86.19  E-value=1.3  Score=35.16  Aligned_cols=64  Identities=14%  Similarity=0.046  Sum_probs=40.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHHHhhhcCchhHHHH
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAY  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (213)
                      .++..+.+++.+..+-.........+.|-++||-|||+.-..-++.+.++++.-.++.+-.+++
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmV  129 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMV  129 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEee
Confidence            4566677777766666666666677788899999999865544444444444444444444433

>KOG3574|consensus

Probab=85.95  E-value=1.4  Score=36.59  Aligned_cols=126  Identities=12%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh-----hhchhHHHH---
Q psy3292          11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD-----RIGRKWTLL---   82 (213)
Q Consensus        11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-----~~Grr~~~~---   82 (213)
                      ......+-...+|.-.|..+ .+|.+.+   ..+.|.++.+...-++.  -.---+++.|+.|     |+||||..+   
T Consensus        32 ~illLl~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34455556788888898887 8898887   67788777765543322  1233467788888     999998743   


Q ss_pred             ---HHHHHHHHHH-H-hhhc-----CchhHH--H--H--hcCCCCCC--------CCCcchhhHHHHHHHHHHHHHHHHH
Q psy3292          83 ---STATLSAFSV-G-QTFG-----WSSPVL--A--Y--LVSPDSPV--------PMSEDESSWVVASMEFGCWAIPFFA  138 (213)
Q Consensus        83 ---~~~~~~~~~~-~-~~~~-----~~~~~l--~--~--~~~~~~~~--------~~~~~~~~~~~~~~~lg~~~g~~~~  138 (213)
                         ++.++..++. . ...+     ++...+  .  .  +...+.+.        .++.++.+..++..++|...|.+++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence               3444433333 2 1111     222221  1  0  12222222        2345555777777788888888776


Q ss_pred             HHHH
Q psy3292         139 GMLC  142 (213)
Q Consensus       139 g~l~  142 (213)
                      +.+-
T Consensus       186 ~~if  189 (510)
T KOG3574|consen  186 NVVF  189 (510)
T ss_pred             ccee
Confidence            6553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=84.27  E-value=23  Score=30.38  Aligned_cols=53  Identities=6%  Similarity=-0.087  Sum_probs=41.5

Q ss_pred             CChhhHHHHHHHHHHHHhhh-hhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292          45 MSEDESSWVVASMEFGCWAI-PFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG   97 (213)
Q Consensus        45 ~s~~~~~~~~s~~~~g~~ig-~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~   97 (213)
                      .+.+...++-+...+-+.+. .++.+++++|++|++.+......+.... +.++.
T Consensus        40 ~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        40 SGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV   94 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence            34567888888887776666 8899999999999999888877777666 55443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3098|consensus

Probab=80.13  E-value=13  Score=31.71  Aligned_cols=50  Identities=26%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292          54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL  103 (213)
Q Consensus        54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l  103 (213)
                      .++......+.+++.+.+.|+.|.|+.+.++...+.... ...+-+.+..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~y  106 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLY  106 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHH
Confidence            677777888999999999999999999999999999888 66666655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.62
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.62
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.53
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.42
2xut_A	524	Proton/peptide symporter family protein; transport	99.26
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.85
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.71
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.66
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.4
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.14
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.41
2xut_A	524	Proton/peptide symporter family protein; transport	96.0

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.86  E-value=1.1e-21  Score=163.82  Aligned_cols=192  Identities=17%  Similarity=0.211  Sum_probs=138.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-----CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch
Q psy3292           3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-----PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR   77 (213)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr   77 (213)
                      .++++.+.+++.++++.+.+|||.++++..+|.+.+     .+.+.+.++.+.+++.+++.+|..+|+++.|+++||+||
T Consensus         5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR   84 (491)
T 4gc0_A            5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR   84 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            446678888999999999999999999998887765     011113345678899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHH-Hhhh------------------cCchhHHHH------------------hcCCCCCCCCCcchh
Q psy3292          78 KWTLLSTATLSAFSV-GQTF------------------GWSSPVLAY------------------LVSPDSPVPMSEDES  120 (213)
Q Consensus        78 r~~~~~~~~~~~~~~-~~~~------------------~~~~~~l~~------------------~~~~~~~~~~~~~~~  120 (213)
                      |++++++.+++.++. ..++                  ++|++++.+                  ...+..|...+....
T Consensus        85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            999999999999998 8774                  667777665                  344555544444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHh--------ccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q psy3292         121 SWVVASMEFGCWAIPFFAGMLCDRI--------GRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDR  192 (213)
Q Consensus       121 ~~~~~~~~lg~~~g~~~~g~l~~~~--------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~  192 (213)
                      +........|...+..++....+..        +||..+....++.       ++.....++.||||+|+ ..++   ++
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~peSp~~L-~~~~---~~  233 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA-------LLFLMLLYTVPESPRWL-MSRG---KQ  233 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH-------HHHHHHGGGSCCCHHHH-HHTT---CH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh-------hhhhhhhhcCCCChHHH-HHcC---ch
Confidence            5555555566666666655554432        3444444444442       22233445569999999 9999   89


Q ss_pred             ccchhhhhhcccc
Q psy3292         193 KKHKSSLVRLEGS  205 (213)
Q Consensus       193 ~~a~~~l~~~~~~  205 (213)
                      |++++.+++.++.
T Consensus       234 ~~a~~~l~~~~~~  246 (491)
T 4gc0_A          234 EQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHhHHHhcCC
Confidence            9999999887654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.62  E-value=2.5e-15  Score=123.70  Aligned_cols=149  Identities=12%  Similarity=-0.013  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292           6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA   85 (213)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~   85 (213)
                      ++++.......++.+..+++.+..++..|.+.+   ++ .++.+.+++.+++.++..+++++.|+++||+|||+++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            445667777888888899999999999999998   88 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-Hhhh----cCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy3292          86 TLSAFSV-GQTF----GWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC  142 (213)
Q Consensus        86 ~~~~~~~-~~~~----~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~  142 (213)
                      ++..++. ..++    +++++.+.+                  ...+..|...+....+.......+|..+|+.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 8888    888877665                  2233334333444456777778899999999999999


Q ss_pred             hHhc-cchhhhhhcccc
Q psy3292         143 DRIG-RKWTLLSTGMLC  158 (213)
Q Consensus       143 ~~~g-~~~~~~~~~~~~  158 (213)
                      +..| ||+.+++.++++
T Consensus       180 ~~~g~w~~~f~~~~~~~  196 (451)
T 1pw4_A          180 AWFNDWHAALYMPAFCA  196 (451)
T ss_dssp             HHTCCSTTCTHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHH
Confidence            9999 999998877663

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.62  E-value=4.1e-16  Score=128.02  Aligned_cols=136  Identities=14%  Similarity=0.123  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292           8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL   87 (213)
Q Consensus         8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~   87 (213)
                      .+.......+..+..+++.+..++..|.+.+   +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            3445556667778888888899999999999   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-Hh---hhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hH
Q psy3292          88 SAFSV-GQ---TFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC-DR  144 (213)
Q Consensus        88 ~~~~~-~~---~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~-~~  144 (213)
                      ..++. ..   .++++++.+.+                  ...+..|...+....+.......+|..+|+.+++.+. +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999 88   88899887766                  2334445445555567888889999999999999998 55


Q ss_pred             hc
Q psy3292         145 IG  146 (213)
Q Consensus       145 ~g  146 (213)
                      .+
T Consensus       181 ~~  182 (438)
T 3o7q_A          181 VP  182 (438)
T ss_dssp             SC
T ss_pred             cc
Confidence            44

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.53  E-value=2.4e-15  Score=121.35  Aligned_cols=142  Identities=15%  Similarity=0.091  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292          13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV   92 (213)
Q Consensus        13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~   92 (213)
                      ....+..+..+++.+...+..|.+.+   +++.++++.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            34455666777788888899999998   899999999999999999999999999999999999999999999999999


Q ss_pred             -HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292          93 -GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS  153 (213)
Q Consensus        93 -~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~  153 (213)
                       ...++++.+.+.+                  ...+..|...+....+.......+|..+++.+++++.+..|||+.+++
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence             8888888877655                  122223344555667888888999999999999999999999999887


Q ss_pred             hccc
Q psy3292         154 TGML  157 (213)
Q Consensus       154 ~~~~  157 (213)
                      .++.
T Consensus       160 ~~~~  163 (375)
T 2gfp_A          160 LLVL  163 (375)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.42  E-value=1.5e-12  Score=108.49  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------  105 (213)
                      |++.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++. ..++++|.+.+.+              
T Consensus        48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence            589999999999999999999999999999999 899999999999999999 9999998887765              


Q ss_pred             ----hcCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ----LVSPDSPVPM--SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ----~~~~~~~~~~--~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                          ...+..|...  +....+......++|..+|+.+++.+.+..|||+.+++.++.
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~  185 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIG  185 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                2222333333  222345566778899999999999999999999999886555

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.26  E-value=2.2e-11  Score=102.28  Aligned_cols=121  Identities=15%  Similarity=0.182  Sum_probs=97.0

Q ss_pred             hhhhCCCCCCC------CChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH-HhhhcC-chhHHH
Q psy3292          34 AYLVSPDSPVP------MSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV-GQTFGW-SSPVLA  104 (213)
Q Consensus        34 ~~~~~~~~~~~------~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~-~~~~~~-~~~~l~  104 (213)
                      +.+.+   +++      .++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++. ...+++ +.+.+.
T Consensus        37 ~~l~~---~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (524)
T 2xut_A           37 PFLMT---ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY  113 (524)
T ss_dssp             HHHHH---SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHH---HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            44555   566      8999999999999999999999999999999 99999999999999999 888888 877665


Q ss_pred             H------------------hcCCCCCCCCCcchhhH---HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         105 Y------------------LVSPDSPVPMSEDESSW---VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       105 ~------------------~~~~~~~~~~~~~~~~~---~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      +                  ...+..|...+....+.   .....++|..+|+.+++++.+..|||+.+++.+++
T Consensus       114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~  187 (524)
T 2xut_A          114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL  187 (524)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4                  22233343333322333   66778899999999999999999999998876665

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.96  E-value=2.5e-08  Score=81.67  Aligned_cols=128  Identities=12%  Similarity=0.008  Sum_probs=95.6

Q ss_pred             cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--chhHHHHHHHHHHH-HHH-HhhhcC--chh
Q psy3292          28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GRKWTLLSTATLSA-FSV-GQTFGW--SSP  101 (213)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~-~~~~~~--~~~  101 (213)
                      ......|.+.+  +.++.++.+.+++.+...++..++.++.|++.||+  |||+.+..+..+.. ++. ...+.+  +.+
T Consensus       270 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T 1pw4_A          270 GILDWSPTYLK--EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT  347 (451)
T ss_dssp             HHHHHHHHHBT--TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred             HHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence            34455676665  13789999999999999999999999999999999  99999888877766 666 655553  333


Q ss_pred             HHHH------------------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         102 VLAY------------------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       102 ~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      ....                  ...+..|...+....+.......+ |..+++.+.|++.|..|++..+++.++.
T Consensus       348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  422 (451)
T 1pw4_A          348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  422 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3222                  223334444445555777777888 9999999999999999998888776655

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.85  E-value=4.4e-08  Score=80.02  Aligned_cols=121  Identities=15%  Similarity=0.040  Sum_probs=89.0

Q ss_pred             hhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---
Q psy3292          31 PVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---  105 (213)
Q Consensus        31 ~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---  105 (213)
                      ...|.+ .+  +.++.++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++. ...+.++......   
T Consensus       279 ~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (438)
T 3o7q_A          279 SYLIRYAVE--EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTL  356 (438)
T ss_dssp             HHHHHHHHH--HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHhhh--ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            444554 43  0458899999999999999999999999999999999999999999888888 7777776554322   


Q ss_pred             --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhc
Q psy3292         106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTG  155 (213)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~  155 (213)
                                    ...+..|.. +....+.. ....+|..+++.+.|++.|..| ++..+.+..
T Consensus       357 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  419 (438)
T 3o7q_A          357 CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI-VMTIIGGGIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH-HHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc-ccchhhHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence                          112222322 22222333 2556899999999999999999 888877543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.71  E-value=1.8e-08  Score=82.47  Aligned_cols=111  Identities=22%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hc
Q psy3292          47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LV  107 (213)
Q Consensus        47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~  107 (213)
                      ....+...+...++..++.++.|+++||+|||+.+..+..+..++. ...+.++.+.+.+                  ..
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778888888889999999999999999999998888888777 7777666554432                  01


Q ss_pred             CCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         108 SPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       108 ~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                      .+..|...+....+. ......+|..+||.+.|++.|..|++..+...+.+
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~  388 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV  388 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence            111111111111222 13344688899999999999988877766555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.66  E-value=9.8e-09  Score=84.01  Aligned_cols=128  Identities=13%  Similarity=0.035  Sum_probs=81.5

Q ss_pred             ccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH----HhhhcCc--
Q psy3292          27 GWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV----GQTFGWS--   99 (213)
Q Consensus        27 ~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~----~~~~~~~--   99 (213)
                      +...+..|.+ .+   +++.++.+.+++.+.+.++..+++++.|+++||+|||++++++..+..+..    ...+.+.  
T Consensus        24 ~~~~~~~~~~l~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (417)
T 2cfq_A           24 GAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ  100 (417)
T ss_dssp             HHHTTTHHHHHHT---TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334566665 44   578999999999999999999999999999999999999988877654321    1112111  


Q ss_pred             --hhHHHHhcCCC--------C---CCCCCcc--h----hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292         100 --SPVLAYLVSPD--------S---PVPMSED--E----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC  158 (213)
Q Consensus       100 --~~~l~~~~~~~--------~---~~~~~~~--~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~  158 (213)
                        ...........        .   +.+..+.  .    .+.......+|..+++.+++++.+ .+|+..+++..++.
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence              11111100000        0   0011110  1    123333457788899999999887 58999888776663

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.40  E-value=9.7e-07  Score=73.18  Aligned_cols=139  Identities=13%  Similarity=-0.005  Sum_probs=87.6

Q ss_pred             hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-----CchhHHHH
Q psy3292          32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-----WSSPVLAY  105 (213)
Q Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~  105 (213)
                      ..|.+.+   ..+.+............+...++.++.+++.||+|||+.++.+.....++. ..+..     ++...+..
T Consensus       299 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  375 (491)
T 4gc0_A          299 YAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  375 (491)
T ss_dssp             HHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3455555   556677777777788888899999999999999999999988877766665 43321     11111111


Q ss_pred             ------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH------hccchhhhhhcccchhh
Q psy3292         106 ------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR------IGRKWTLLSTGMLCDRI  161 (213)
Q Consensus       106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~------~g~~~~~~~~~~~~~~~  161 (213)
                                        ...+..|...+....+...+...++..+++.+.+.+.+.      .+....+++.+.+++  
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~--  453 (491)
T 4gc0_A          376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV--  453 (491)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence                              234556666666667777777788888877776665432      344455554444322  


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q psy3292         162 GRKWTLLSTGMLCDRIGR  179 (213)
Q Consensus       162 ~~~~~l~~~~~~~~~es~  179 (213)
                          +...+..+++||++
T Consensus       454 ----~~~i~~~~~~PETk  467 (491)
T 4gc0_A          454 ----LAALFMWKFVPETK  467 (491)
T ss_dssp             ----HHHHHHHHHCCCCT
T ss_pred             ----HHHHHHHheecCCC
Confidence                11122344458876

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.14  E-value=3.1e-06  Score=70.20  Aligned_cols=114  Identities=12%  Similarity=-0.036  Sum_probs=75.4

Q ss_pred             CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH-----HHHHHHHHHH-HhhhcC---------chhHHHH--
Q psy3292          43 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL-----STATLSAFSV-GQTFGW---------SSPVLAY--  105 (213)
Q Consensus        43 ~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~-~~~~~~---------~~~~l~~--  105 (213)
                      .+.+..+.++..+...++..++.++.+++.||+|||+...     .+..+..++. ...+..         +.+....  
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (491)
T 4aps_A          314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW  393 (491)
T ss_dssp             CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred             hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence            3444466777888888999999999999999999986654     6666666666 554421         3222222  


Q ss_pred             ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                                      ...+..|...+....+.......+|..+++.+.+.+.+. +..+.+...+..
T Consensus       394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~  460 (491)
T 4aps_A          394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLG  460 (491)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Confidence                            223344556666677888888889999999888877654 555555544444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.41  E-value=1.1e-05  Score=64.49  Aligned_cols=118  Identities=13%  Similarity=0.020  Sum_probs=69.7

Q ss_pred             hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH-HHHHH-Hhhhc----CchhHHH
Q psy3292          31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL-SAFSV-GQTFG----WSSPVLA  104 (213)
Q Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~-~~~~~-~~~~~----~~~~~l~  104 (213)
                      ...|.+.+  +.++.++.+.+.+.+...++..++.++.+++.||+||+.  ..+... ...+. .....    ++.+.+.
T Consensus       220 ~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (375)
T 2gfp_A          220 ACSGVLMG--AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLL  295 (375)
T ss_dssp             HHCSCSSH--HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHH
Confidence            34454443  025778899999999999999999999999999999832  222222 22222 22211    2333222


Q ss_pred             H----------h--------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292         105 Y----------L--------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS  153 (213)
Q Consensus       105 ~----------~--------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~  153 (213)
                      +          .        ..+..| ..+....+.......+|..+++.+.+.+.+..+++..+..
T Consensus       296 ~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          296 VPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            2          1        111111 1122223445556677888888888888887777666654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=96.00  E-value=0.0053  Score=51.04  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHhh----hhhchh----HHHHHHHHHHHHHH-Hhhhc---------CchhHHHH-----
Q psy3292          49 ESSWVVASMEFGCWAIPFFAGMLC----DRIGRK----WTLLSTATLSAFSV-GQTFG---------WSSPVLAY-----  105 (213)
Q Consensus        49 ~~~~~~s~~~~g~~ig~~~~g~l~----d~~Grr----~~~~~~~~~~~~~~-~~~~~---------~~~~~l~~-----  105 (213)
                      ..+.+.+...++..++..+.+.+.    ||.|+|    +.+..+..+..++. ...+.         .+.+.+..     
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            345555555566666666666654    555432    45566666666666 55543         23332222     


Q ss_pred             -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292         106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR  144 (213)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~  144 (213)
                                   ...+..|...+....+.......+|..+|+.+.+.+.+.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                         122344556666777888888899999999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.59
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.09
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.81
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.66

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.1e-15  Score=121.66  Aligned_cols=150  Identities=12%  Similarity=-0.022  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292           5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST   84 (213)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~   84 (213)
                      ++.+|.+.....++.+...+|....+...|.+.|    .+.|+++.+++.+++.++..+++++.|+++||+|||+++..+
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS----STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            3456777788888888888888888888887754    699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcC----chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy3292          85 ATLSAFSV-GQTFGW----SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGML  141 (213)
Q Consensus        85 ~~~~~~~~-~~~~~~----~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l  141 (213)
                      .++..++. ..++.+    +++.+.+                  ...+..|...+....+.......+|..+++.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            99988888 776653    4444433                  223333433334445666677788888888888887


Q ss_pred             HhHh-ccchhhhhhcccc
Q psy3292         142 CDRI-GRKWTLLSTGMLC  158 (213)
Q Consensus       142 ~~~~-g~~~~~~~~~~~~  158 (213)
                      .+.. +||+.+++...++
T Consensus       176 ~~~~~~w~~~~~~~~~~~  193 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCA  193 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHH
T ss_pred             hhhhhcccccchhhhhhH
Confidence            7665 7899888777663

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=7.3e-11  Score=92.64  Aligned_cols=141  Identities=15%  Similarity=0.028  Sum_probs=93.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292           4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL   82 (213)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~   82 (213)
                      +|++.|.......+..+.    .+...+..|.+ .+   +++.|+++.+++.+++.++..+++++.|+++||+|||++++
T Consensus         5 kn~~~~~l~~~~f~~~~~----~~~~~~~l~~~l~~---~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFI----MGAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            355555555444444433    44556777764 55   67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhcCchhHHHH-------hcCCC----CCCC-------------CCcchhhHHHHHHHHHHHHHHHH
Q psy3292          83 STATLSAFSV-GQTFGWSSPVLAY-------LVSPD----SPVP-------------MSEDESSWVVASMEFGCWAIPFF  137 (213)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~l~~-------~~~~~----~~~~-------------~~~~~~~~~~~~~~lg~~~g~~~  137 (213)
                      ++.....++. ...+..+......       .....    .+..             ......+........+..+++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI  157 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccc
Confidence            9988888888 7766655443322       11000    0000             00111234455567788888888


Q ss_pred             HHHHHhHhccchhh
Q psy3292         138 AGMLCDRIGRKWTL  151 (213)
Q Consensus       138 ~g~l~~~~g~~~~~  151 (213)
                      ++.+.+..+++...
T Consensus       158 ~~~l~~~~~~~~~~  171 (417)
T d1pv7a_         158 VGIMFTINNQFVFW  171 (417)
T ss_dssp             HHHHHHHCHHHHHH
T ss_pred             cccccccccccccc
Confidence            88888764444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=4.9e-09  Score=81.92  Aligned_cols=116  Identities=21%  Similarity=0.250  Sum_probs=88.1

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---------------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------------  105 (213)
                      +.+.+....+...+...++..++..+.+++.||+|||+.+..+..+..++. ...+.++.+...+               
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  332 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG  332 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence            344566777888888999999999999999999999999999999999999 8888888776655               


Q ss_pred             ---hcCCCCCCCCCcchhhHHHH-HHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 ---LVSPDSPVPMSEDESSWVVA-SMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 ---~~~~~~~~~~~~~~~~~~~~-~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                         ...+..|...+....+...+ ...+|..+++.+.|++.|++|++..+++.+.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~  388 (417)
T d1pv7a_         333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV  388 (417)
T ss_dssp             HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence               12222333222233333322 35678899999999999999999988776655

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.9e-07  Score=73.02  Aligned_cols=116  Identities=13%  Similarity=0.041  Sum_probs=75.6

Q ss_pred             CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH---HHHH-Hhhh--cCchhHHHH----------
Q psy3292          42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS---AFSV-GQTF--GWSSPVLAY----------  105 (213)
Q Consensus        42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~---~~~~-~~~~--~~~~~~l~~----------  105 (213)
                      ..+.++.+.++..+...++..++.++.|++.||++||+.........   .+.. ....  ..+.+...+          
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  358 (447)
T d1pw4a_         279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY  358 (447)
T ss_dssp             BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred             ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999865433332222   2222 2211  223222222          


Q ss_pred             --------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292         106 --------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKWTLLSTGML  157 (213)
Q Consensus       106 --------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~~~~~~~~~  157 (213)
                              ...+..|...+....+.......+ |...++++.|++.|..|++..++.....
T Consensus       359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~  419 (447)
T d1pw4a_         359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  419 (447)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence                    223334433334444555555555 5566889999999999999888766555