Psyllid ID: psy3312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDSIEKKQPIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHcccccccccccccccccccccccccccccEcccHHccEEEEHHHHHEEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEEEEEHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdsiekkqpidipdkpdyliSQRYLIGLLGFLAFALTYVQRFCLSMAITEMAhtehkvsnkslqcpvpvlirnqtvnkhyefdwdertqglilSSFFWGYVLNHIPGAliaeryggkyvLGFGLLVSTLATLATPLAARSFGAVGILCARFIVglgqgpaypsmNVILAqwvpktergrmgaLVFAGSY
Flexible Loop (DISEMBL)
mdsiekkqpidipdkpdYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTehkvsnkslqcpvPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWvpktergrMGALVFAGSY
Low Complexity Region (SEG)
MDSIEKKQPIDIPDKPDYLISQRYLIgllgflafalTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGllvstlatlatplaaRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY
Disordered region (IsUnstruct)
****************DYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF****
Disordered Region (DISOPRED)
**************KPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSL***********TVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY
Disordered Region (DISEMBL)
********PIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY
Disordered Region (DISPRO)
********PIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHT*************************YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIEKKQPIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9V7S5	529	Putative inorganic phosph	no	N/A	0.941	0.336	0.366	5e-29
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	N/A	0.862	0.329	0.4	5e-28
O61369	483	Putative inorganic phosph	N/A	N/A	0.809	0.316	0.396	4e-27
Q9NRA2	495	Sialin OS=Homo sapiens GN	yes	N/A	0.873	0.333	0.364	1e-26
Q652N5	591	Probable anion transporte	yes	N/A	0.740	0.236	0.404	9e-26
Q8GX78	541	Probable anion transporte	yes	N/A	0.740	0.258	0.386	4e-25
O82390	512	Sodium-dependent phosphat	no	N/A	0.740	0.273	0.398	2e-24
Q05B21	576	Vesicular glutamate trans	no	N/A	0.899	0.295	0.329	4e-24
Q6INC8	576	Vesicular glutamate trans	N/A	N/A	0.899	0.295	0.329	5e-24
Q9SDI4	529	Probable anion transporte	no	N/A	0.740	0.264	0.398	7e-24

>sp|Q9V7S5|PICO_DROME Putative inorganic phosphate cotransporter OS=Drosophila melanogaster GN=Picot PE=1 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 2/180 (1%)

Query: 11  DIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVL 70
            +  +P    + RY +  + FL  A  YV R  +S+AI  M +     S ++ +      
Sbjct: 28  SLEQQPQRCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDECG 87

Query: 71  IRNQTVNKHY--EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVST 128
            R+  ++     EF W    QG ILSSFF+GYV+  IP  ++A++YG    LG+G+L+++
Sbjct: 88  DRDIPIDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINS 147

Query: 129 LATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           +     P+AAR  G  G+   RFI GLG+GP  P  + +LA+W+P  ER RMGA V+AG+
Sbjct: 148 VFAFLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGA 207

May be an inorganic phosphate cotransporter.
Drosophila melanogaster (taxid: 7227)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 103/175 (58%), Gaps = 12/175 (6%)

Query: 21  SQRYLIGLLGFLAFALTYVQRFCLSMAITEM--AHTEHKVSNKSLQC-----PVPVLIRN 73
           S RY +  L F  F + Y  R  LS+A+ +M  ++T  K +  S +C     P+ VL  N
Sbjct: 37  SARYNLAFLSFFGFFVLYSLRVNLSVALVDMVDSNTTAKDNRTSYECAEHSAPIKVL-HN 95

Query: 74  QTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA 133
           QT  K   + WD  TQG IL SFF+GY++  IPG  +A R GGK +LGFG+  + + TL 
Sbjct: 96  QTGKK---YRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFTLF 152

Query: 134 TPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           TPLAA  FG   ++  R + GLG+G  YP+M+ + + W P  ER ++ ++ +AG+
Sbjct: 153 TPLAA-DFGVGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGA 206

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

>sp|O61369|PICO_DROAN Putative inorganic phosphate cotransporter OS=Drosophila ananassae GN=Picot PE=3 SV=1

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 11/164 (6%)

Query: 31  FLAFALTYVQRFCLSMAITEMA-HT-----EHKVSNKSLQCPVPVLIRNQTVNKHYEFDW 84
           FL  A  YV R  +S+AI  M  HT     E +  ++     +P+       ++  EF W
Sbjct: 3   FLGMANAYVMRTNMSVAIVAMVNHTAIKSGEEEYDDECGDRDIPI-----DDSQDGEFPW 57

Query: 85  DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAV 144
           +   QG ILSSFF+GYV+  IP  ++A++YG    LG+G+L++++     P+AAR  G  
Sbjct: 58  NAALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVW 117

Query: 145 GILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           G+   RFI GLG+GP  P  + +LA+W+P  ER RMGA V+AG+
Sbjct: 118 GLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGA 161

May be an inorganic phosphate cotransporter.

Drosophila ananassae (taxid: 7217)

>sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 8/173 (4%)

Query: 21  SQRYLIGLLGFLAFALTYVQRFCLSMAITEM--AHTEHKVSNKSLQCP---VPVLIRNQT 75
           S RY + +L F  F + Y  R  LS+A+ +M  ++T  + +  S  CP    P+ + +  
Sbjct: 37  SARYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQ 96

Query: 76  VNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP 135
             K Y+  WD  TQG IL SFF+GY++  IPG  +A + GGK +LGFG+L + + TL TP
Sbjct: 97  TGKKYQ--WDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTP 154

Query: 136 LAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           +AA   G   ++  R + GLG+G  +P+M+ + + W P  ER ++ ++ +AG+
Sbjct: 155 IAA-DLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGA 206

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 28/168 (16%)

Query: 22  QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYE 81
           +R+ + LL F +F L  + R  +S+AI  M+                            E
Sbjct: 180 KRWTVVLLCFFSFLLCNMDRVNMSIAILPMSS---------------------------E 212

Query: 82  FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF 141
           F W   T GLI SSFFWGY+L  I G + A+R+GGK VLGFG++  ++AT+ TPLAA+  
Sbjct: 213 FGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAK-I 271

Query: 142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
           G   +L  R  +G+G+G A P+MN IL++WVP +ER R  ALV++G Y
Sbjct: 272 GLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMY 319

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 28/168 (16%)

Query: 22  QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYE 81
           +R++I LL F +F L  + R  +S+AI  M+                            E
Sbjct: 130 RRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQ---------------------------E 162

Query: 82  FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF 141
           ++W   T GLI SSFFWGY+L  I G + A+++GGK VLGFG++  + AT+ TP+AAR  
Sbjct: 163 YNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAAR-L 221

Query: 142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
           G   +L  R  +G+G+G A P+MN +L++W+P +ER R  ALV++G Y
Sbjct: 222 GLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMY 269

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 28/168 (16%)

Query: 22  QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYE 81
           +R++I LL F AF L  + R  +S+AI  M+                            E
Sbjct: 101 KRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA---------------------------E 133

Query: 82  FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF 141
           + W+  T GLI SSFFWGY+L  I G + A+  GGK VLGFG++  ++AT+ TP+AA+  
Sbjct: 134 YGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAK-L 192

Query: 142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
           G   +L  R  +G+G+G A P+MN IL++WVP  ER R  ALV++G Y
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMY 240

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05B21|VGLU1_XENTR Vesicular glutamate transporter 1 OS=Xenopus tropicalis GN=slc17a7 PE=2 SV=1

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 15/185 (8%)

Query: 5   EKKQPIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQ 64
           EK+QP+   D   + + +RY+I ++  L F +++  R  L +AI  M      V+N +  
Sbjct: 46  EKRQPV--VDCTCFGLPRRYIIAIMSGLGFCISFGIRCNLGVAIVSM------VNNNT-- 95

Query: 65  CPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGL 124
               V   N+ V +  +F WD  T G+I  SFFWGY++  IPG  I +++    V GF +
Sbjct: 96  ----VYKGNKIVIEQAQFTWDPETVGMIHGSFFWGYIVTQIPGGYICQKFAANRVFGFAI 151

Query: 125 LVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184
           + ++   +  P AAR   A  ++C R + GL +G  YP+ + I ++W P  ER R+    
Sbjct: 152 VATSTLNMLIPSAARVHFAC-VICVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTA 210

Query: 185 FAGSY 189
           F GSY
Sbjct: 211 FCGSY 215

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus tropicalis (taxid: 8364)

>sp|Q6INC8|VGLU1_XENLA Vesicular glutamate transporter 1 OS=Xenopus laevis GN=slc17a7 PE=2 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 15/185 (8%)

Query: 5   EKKQPIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQ 64
           EK QP+   D   + + +RY+I ++  L F +++  R  L +AI  M      V+N +  
Sbjct: 46  EKHQPV--VDCTCFGLPRRYIIAIMSGLGFCISFGIRCNLGVAIVSM------VNNNT-- 95

Query: 65  CPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGL 124
               V   N+ V +  +F+WD  T G+I  SFFWGY++  IPG  I +++    V GF +
Sbjct: 96  ----VYKGNKLVIEQAQFNWDPETVGMIHGSFFWGYIVTQIPGGYICQKFAANRVFGFAI 151

Query: 125 LVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184
           + ++   +  P AAR   A  ++C R + GL +G  YP+ + I ++W P  ER R+    
Sbjct: 152 VATSTLNMLIPSAARVHFAC-VICVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTA 210

Query: 185 FAGSY 189
           F GSY
Sbjct: 211 FCGSY 215

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus laevis (taxid: 8355)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  110 bits (274), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 28/168 (16%)

Query: 22  QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYE 81
           +R+ I  L F AF L  + R  +S+AI  M+                            E
Sbjct: 118 KRWAIVFLCFSAFLLCNMDRVNMSIAILPMSA---------------------------E 150

Query: 82  FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF 141
           F W+ +T GLI SSFFWGY+L  I G + A+  GGK VLGFG++  ++AT  TP AA+  
Sbjct: 151 FGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSIATALTPFAAK-L 209

Query: 142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
           G   +L  R  +G+G+G A P+MN IL++WVP +ER R  ALV++G Y
Sbjct: 210 GLPFLLVTRAFMGVGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMY 257

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
328706522	494	PREDICTED: putative inorganic phosphate	0.925	0.354	0.530	9e-46
193643337	493	PREDICTED: putative inorganic phosphate	0.899	0.344	0.531	9e-45
332017618	493	Putative inorganic phosphate cotransport	0.888	0.340	0.479	1e-40
322794510	486	hypothetical protein SINV_12524 [Solenop	0.894	0.347	0.458	1e-40
307170758	489	Putative inorganic phosphate cotransport	0.862	0.333	0.460	3e-39
328702822	485	PREDICTED: putative inorganic phosphate	0.962	0.375	0.429	1e-37
270012476	496	hypothetical protein TcasGA2_TC006631 [T	0.925	0.352	0.460	2e-36
242014172	465	sialin, putative [Pediculus humanus corp	0.825	0.335	0.444	3e-36
345482563	503	PREDICTED: putative inorganic phosphate	0.888	0.333	0.433	4e-36
91089231	486	PREDICTED: similar to sodium-dependent p	0.899	0.349	0.443	7e-36

>gi|328706522|ref|XP_003243119.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 2 [Acyrthosiphon pisum]

 Score =  188 bits (477), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 128/181 (70%), Gaps = 6/181 (3%)

Query: 13  PDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMA----HTEHKVSNKSLQCPVP 68
           PD  D+ I QRY++  +GF+A A+ YVQRFCLS+AITEMA    HT H+ +     CP  
Sbjct: 7   PDGRDF-IQQRYVLSTMGFMALAIGYVQRFCLSLAITEMAEQSHHTVHQNAKFGTVCPDS 65

Query: 69  VLIRNQT-VNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVS 127
               N T   K  EFDWDE+TQGL+LSSFFWGYV+  +PG ++A++YGGK  LG G+L S
Sbjct: 66  RSFGNTTHFKKEMEFDWDEKTQGLVLSSFFWGYVVTQMPGGMLADKYGGKATLGLGMLFS 125

Query: 128 TLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
           ++ T+ TP+ ARS+G   ++  R I+GL QGP YP+M+ +LA WVP  ERGR+G+LVFAG
Sbjct: 126 SIGTIITPVVARSYGPDALIILRLIIGLAQGPLYPAMSRLLASWVPVEERGRLGSLVFAG 185

Query: 188 S 188
           +
Sbjct: 186 A 186

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193643337|ref|XP_001943339.1| PREDICTED: putative inorganic phosphate cotransporter-like isoform 1 [Acyrthosiphon pisum]

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 124/175 (70%), Gaps = 5/175 (2%)

Query: 19  LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMA----HTEHKVSNKSLQCPVPVLIRNQ 74
            I QRY++  +GF+A A+ YVQRFCLS+AITEMA    HT H+ +     CP      N 
Sbjct: 11  FIQQRYVLSTMGFMALAIGYVQRFCLSLAITEMAEQSHHTVHQNAKFGTVCPDSRSFGNT 70

Query: 75  T-VNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA 133
           T   K  EFDWDE+TQGL+LSSFFWGYV+  +PG ++A++YGGK  LG G+L S++ T+ 
Sbjct: 71  THFKKEMEFDWDEKTQGLVLSSFFWGYVVTQMPGGMLADKYGGKATLGLGMLFSSIGTII 130

Query: 134 TPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           TP+ ARS+G   ++  R I+GL QGP YP+M+ +LA WVP  ERGR+G+LVFAG+
Sbjct: 131 TPVVARSYGPDALIILRLIIGLAQGPLYPAMSRLLASWVPVEERGRLGSLVFAGA 185

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017618|gb|EGI58315.1| Putative inorganic phosphate cotransporter [Acromyrmex echinatior]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 3/171 (1%)

Query: 20  ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMA-HTEHKVSNKSLQCPVPVLIRNQ-TVN 77
           +SQR++   +GFLA    Y  R CLS+ ITEMA   +H  +++   C      +   T +
Sbjct: 16  LSQRWIFAFMGFLAILNAYTMRVCLSITITEMAVSIKHNYTDQD-TCKYDTAEKESVTYS 74

Query: 78  KHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA 137
              ++DWDERTQGLILSSFFWGY+L HIPG +++ER+GGKY LG G+L + + TL TPL 
Sbjct: 75  MEGKYDWDERTQGLILSSFFWGYILTHIPGGILSERFGGKYTLGLGILSTAIFTLLTPLV 134

Query: 138 ARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
            +  GAVG++  R ++GLG+G  +P++N +LAQW P  ER  +G+LVFAG+
Sbjct: 135 VQWRGAVGLIVLRVLMGLGEGTTFPALNALLAQWTPPEERSIIGSLVFAGA 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794510|gb|EFZ17563.1| hypothetical protein SINV_12524 [Solenopsis invicta]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 20  ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMA-HTEHKVSNKSLQCPVPVLIRNQTVNK 78
           +SQR++  ++GFLA    Y  R CLS+ ITEM     H  SN + +CP   +   Q ++ 
Sbjct: 18  LSQRWIFAIMGFLAILNAYTMRICLSITITEMTIPIHHNYSNDTERCPKIDVDEKQEIDI 77

Query: 79  HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA 138
              +DWDE TQGLILSSF+WGYV+ H+PG ++AE++GGKY L  G+L + + TL TPL  
Sbjct: 78  TNRYDWDEHTQGLILSSFYWGYVITHLPGGILAEKFGGKYTLSLGILSTAVFTLLTPLVV 137

Query: 139 RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
               A G++  R ++GLG+G  +P++N +LAQW P  ER  +G+LVFAG+
Sbjct: 138 DWGQATGLIVLRILMGLGEGTTFPALNAMLAQWTPPEERSVIGSLVFAGA 187

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170758|gb|EFN62883.1| Putative inorganic phosphate cotransporter [Camponotus floridanus]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 112/176 (63%), Gaps = 13/176 (7%)

Query: 20  ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKH 79
           + QR++  ++GFLA    Y  R CLS+ ITEMA T HK S     CP      NQT+NK 
Sbjct: 12  LPQRWVFAVMGFLAILNAYSMRVCLSITITEMAPTTHKESIDD-SCP-----YNQTINKD 65

Query: 80  YE-------FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL 132
                    +DWDE TQGLILSSF+WGYV+ H+PG ++AER+GGKY LG G+  + + TL
Sbjct: 66  ENNKKDVKLYDWDEHTQGLILSSFYWGYVITHLPGGILAERFGGKYSLGLGIFSTAIFTL 125

Query: 133 ATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
            TP+      + G++  R ++G G+G  +P++N +LAQW P  ER  +G+LVFAG+
Sbjct: 126 LTPVVVDFGDSAGLIVLRILMGFGEGTTFPALNAMLAQWTPPEERSMIGSLVFAGA 181

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702822|ref|XP_001946515.2| PREDICTED: putative inorganic phosphate cotransporter-like [Acyrthosiphon pisum]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 5   EKKQPIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQ 64
           + ++P +     D   S+RY+I ++GF+  A  Y  R  LS+AITEM    H+ +     
Sbjct: 4   KNRRPSESRSIIDSACSKRYVIAIMGFIGIANAYAMRSVLSVAITEMVEDIHRTAIDPNG 63

Query: 65  CPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGL 124
           CP P+   N T N + EFDW E  QG IL +F++GYV   IPG ++A++YGGK+V G G+
Sbjct: 64  CPGPLKTANTT-NPNAEFDWSETLQGHILGAFYYGYVFAQIPGGILAQKYGGKHVFGVGI 122

Query: 125 LVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184
            ++ + TL TP+AAR  G   ++  R + G+G+GP  P+MN +LAQWVP  ER R+G+ V
Sbjct: 123 FLTAVLTLLTPIAAR-IGPAYMIGVRVLEGVGEGPTIPAMNALLAQWVPIGERSRIGSFV 181

Query: 185 FAGS 188
           FAG+
Sbjct: 182 FAGN 185

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012476|gb|EFA08924.1| hypothetical protein TcasGA2_TC006631 [Tribolium castaneum]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/178 (46%), Positives = 110/178 (61%), Gaps = 3/178 (1%)

Query: 14  DKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSN-KSLQCPVPVLIR 72
           D+  +LI QRY++G++GFLA    Y  R  LS+AITEM       ++     CP  +   
Sbjct: 18  DRNLFLIPQRYVLGVMGFLAIVNAYTMRVTLSVAITEMVEPSKASTHYDPDSCPGSLANT 77

Query: 73  NQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL 132
           +   N    + W    QGLILSSF+WGYV+ HIPG +IAER+GGKY LG G+L + + T 
Sbjct: 78  SSVTNSDKLYPWTSTQQGLILSSFYWGYVITHIPGGMIAERFGGKYSLGLGILCTAIFTF 137

Query: 133 ATPLAA-RSFGAVG-ILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
            TP     S G  G ++  R I GLG+G  +P++NV+LAQWVP  ER ++G LVFAGS
Sbjct: 138 ITPFVIYASDGHWGWVVFVRVIEGLGEGTTFPALNVLLAQWVPLHERSKIGTLVFAGS 195

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014172|ref|XP_002427769.1| sialin, putative [Pediculus humanus corporis] gi|212512223|gb|EEB15031.1| sialin, putative [Pediculus humanus corporis]

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 112/171 (65%), Gaps = 15/171 (8%)

Query: 18  YLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVN 77
           +LI QRY++ ++GFLA A  Y  R CL++AIT+M   ++   N  L   +          
Sbjct: 3   FLIPQRYILAIMGFLAIANAYQLRVCLNIAITQMVVPKNSTGNPPLNDNL---------- 52

Query: 78  KHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA 137
               FDW E TQ +IL +F++GYV+ H+PG ++A+ +GGKY LG G+L + + TL  PLA
Sbjct: 53  ----FDWSEETQSIILGAFYYGYVITHMPGGIVADHFGGKYTLGLGILCTAIFTLLVPLA 108

Query: 138 ARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           A+S G V ++ AR I G G+G  +P++NV+LA+W+P  ERG +G+LVFAGS
Sbjct: 109 AKS-GVVWLIVARVITGFGEGTTFPALNVLLARWIPLEERGFLGSLVFAGS 158

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482563|ref|XP_001607837.2| PREDICTED: putative inorganic phosphate cotransporter-like [Nasonia vitripennis]

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 12/180 (6%)

Query: 20  ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAH-----------TEHKVSNKSLQCPVP 68
           I QR++  L+GFLA    Y  R CLS+AITEM              E +VS+        
Sbjct: 12  IPQRWVFALMGFLALLNAYAMRVCLSIAITEMTVPLNNSVAGDNICEAEVSSPGAGAGNS 71

Query: 69  VLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVST 128
               + T NK Y ++W E  QG+ILSSF+WGY+L H+PG ++AER+GGKY LG G+L + 
Sbjct: 72  SASESITANK-YTYEWSEELQGIILSSFYWGYILTHLPGGMLAERFGGKYSLGLGILSTA 130

Query: 129 LATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           + TL TP+A +   A  ++  R ++GLG+G  +P++N +LAQW P  ER ++G+LVFAG+
Sbjct: 131 IFTLLTPVAVKWGDATALIVLRVLMGLGEGTTFPALNAMLAQWTPPEERSKIGSLVFAGA 190

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089231|ref|XP_968382.1| PREDICTED: similar to sodium-dependent phosphate transporter [Tribolium castaneum] gi|270012477|gb|EFA08925.1| hypothetical protein TcasGA2_TC006632 [Tribolium castaneum]

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 6/176 (3%)

Query: 18  YLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKV-SNKSLQCPVPVLIRNQTV 76
           ++I QRY++G++GFLA    Y  R  LS+AITEM    +   +N    CP    I N + 
Sbjct: 14  FIIPQRYIMGIMGFLAIVNAYTMRVSLSVAITEMVLPPNTTQANNPDSCPSDDGITNSST 73

Query: 77  --NKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLAT 134
             +    +DW E TQGLILSSF+WGY++ H+PG ++AE++GG+Y LG G+L +   TL T
Sbjct: 74  ITDPDKLYDWSESTQGLILSSFYWGYLITHLPGGILAEKFGGRYTLGLGILSTAFFTLIT 133

Query: 135 PLAARSFGA--VGILCARFIVGLGQGPAYPSMNVILAQ-WVPKTERGRMGALVFAG 187
           PL   + G   V ++  R + GLG+G  YP++N +LA+ WVP  ER +MG+LV+AG
Sbjct: 134 PLVIHASGGNWVALVVLRLVEGLGEGTTYPALNTLLAKWWVPLHERAKMGSLVYAG 189

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
FB|FBgn0010497	496	dmGlut "Dietary and metabolic	0.894	0.340	0.358	2.4e-26
FB|FBgn0028513	481	CG9254 [Drosophila melanogaste	0.899	0.353	0.309	6.1e-24
FB|FBgn0030452	559	MFS10 "Major Facilitator Super	0.793	0.268	0.383	6.3e-23
FB|FBgn0024315	529	Picot "Picot" [Drosophila mela	0.931	0.332	0.344	1.1e-22
FB|FBgn0029727	479	CG6978 [Drosophila melanogaste	0.825	0.325	0.359	7.8e-22
UNIPROTKB|O61369	483	Picot "Putative inorganic phos	0.772	0.302	0.375	1.3e-21
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.952	0.368	0.313	1.8e-21
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.862	0.329	0.348	1.9e-21
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.862	0.329	0.331	1.4e-20
FB|FBgn0042126	540	CG18788 [Drosophila melanogast	0.550	0.192	0.384	3.3e-20

FB|FBgn0010497 dmGlut "Dietary and metabolic glutamate transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 61/170 (35%), Positives = 92/170 (54%)

Query:    18 YLISQRYLIXXXXXXXXXXTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVN 77
             ++I QR ++           Y  R CLS AIT +   ++   + S     P  I   T +
Sbjct:    15 FVIPQRVILAIMGFLAILNAYTMRVCLSQAITVLVVKKNSTDDDSEAICEPDDIDEGT-S 73

Query:    78 KHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXXXXXX 137
                +F+W E  QGLILSSF+ GY++ HIPG L+AE++GGK+ LG G              
Sbjct:    74 VGGDFEWSEELQGLILSSFYIGYIVTHIPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLA 133

Query:   138 XRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
                  +  ++  R ++GLG+G  +P+++V+LA WVP  ERG++GALV  G
Sbjct:   134 INKGDSDWLIVTRVLMGLGEGTTFPALSVLLAAWVPANERGKLGALVLGG 183

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IGI;IMP

GO:0006541 "glutamine metabolic process" evidence=IGI;IMP

GO:0015319 "sodium:inorganic phosphate symporter activity" evidence=IDA

GO:0044341 "sodium-dependent phosphate transport" evidence=IMP;IDA

GO:0051938 "L-glutamate import" evidence=IDA

GO:0005314 "high-affinity glutamate transmembrane transporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015321 "sodium-dependent phosphate transmembrane transporter activity" evidence=IMP

FB|FBgn0028513 CG9254 [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 6.1e-24, P = 6.1e-24
 Identities = 53/171 (30%), Positives = 90/171 (52%)

Query:    18 YLISQRYLIXXXXXXXXXXTYVQRFCLSMAITEMA-HTEHKVSNKSLQCPVPVLIRNQTV 76
             +++ QR+++           Y  R CLS AIT +     + + +    C         + 
Sbjct:    18 FVLPQRWILAIMGFFAIFNAYTMRICLSQAITVLVVKRNYTIFHTEAICEPDDQSDPSST 77

Query:    77 NKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXXXXX 136
              +  ++DW +  QGLIL+SF+ GY++ H+PG ++A+++GGK+ L  G             
Sbjct:    78 FEGGDYDWSQEKQGLILASFYIGYIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPV 137

Query:   137 XXRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
                  GA  ++  R ++GLG+G  +P+++V+LA WVP  ERG +GALV  G
Sbjct:   138 CIVYGGADALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGG 188

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0030452 MFS10 "Major Facilitator Superfamily Transporter 10" [Drosophila melanogaster (taxid:7227)]

 Score = 272 (100.8 bits), Expect = 6.3e-23, P = 6.3e-23
 Identities = 61/159 (38%), Positives = 85/159 (53%)

Query:    38 YVQRFCLSMAITEMAH-TEHKVSNKSL----QCPVPVLIRNQT---VNKHYEFDWDERTQ 89
             Y  R  LS+AI  M + T    SN S+     CP+P    N +     K  EF WDE TQ
Sbjct:    83 YAMRVNLSVAIVAMVNQTAIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQ 142

Query:    90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXXXXXXXRSFGAVGILCA 149
             GL+L SFF+GYVL  +PG  +AE YGGK + G+G                 +    ++  
Sbjct:   143 GLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLAAH-WDLPLLVLV 201

Query:   150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
             R + G+G+G  YP+M+ +LA W+P  ER +  A+V+AGS
Sbjct:   202 RILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS 240

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0024315 Picot "Picot" [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 62/180 (34%), Positives = 89/180 (49%)

Query:    12 IPDKPDYLISQRYLIXXXXXXXXXXTYVQRFCLSMAITEMA-HTEHKVSNKSLQCPVPVL 70
             +  +P    + RY +           YV R  +S+AI  M  HT  K S ++ +      
Sbjct:    29 LEQQPQRCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIK-SGEAEEYDDECG 87

Query:    71 IRNQTVNKHY--EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXX 128
              R+  ++     EF W    QG ILSSFF+GYV+  IP  ++A++YG    LG+G     
Sbjct:    88 DRDIPIDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINS 147

Query:   129 XXXXXXXXXXRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
                       R  G  G+   RFI GLG+GP  P  + +LA+W+P  ER RMGA V+AG+
Sbjct:   148 VFAFLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGA 207

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=IEA

GO:0035435 "phosphate ion transmembrane transport" evidence=IEA

FB|FBgn0029727 CG6978 [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 60/167 (35%), Positives = 83/167 (49%)

Query:    23 RYLIXXXXXXXXXXTYVQRFCLSMAITEMA-HTEHKVSNKSLQCPVPVLIRNQTVNKHYE 81
             R+ +           YV R  +S+AI  M  HT    +  S           Q+  +  +
Sbjct:    41 RFFVVLMLFSGMANAYVMRTNMSVAIVAMVNHTAISHTKSS----------TQSKERDGD 90

Query:    82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXXXXXXXRSF 141
             F+W  + QG ILSSFF+GYV+  IP  L+ + YG ++ LG+G               RS 
Sbjct:    91 FEWSYKLQGYILSSFFYGYVITQIPFGLMIKYYGARHFLGWGMMINSLAAFFIPISARSG 150

Query:   142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
             G VG+   RFI GLG+GP  P  + +LAQWVP  ER   GA V+AG+
Sbjct:   151 GVVGLCVVRFIQGLGEGPIVPCSHSLLAQWVPPNERSLAGAAVYAGA 197

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|O61369 Picot "Putative inorganic phosphate cotransporter" [Drosophila ananassae (taxid:7217)]

 Score = 258 (95.9 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 59/157 (37%), Positives = 83/157 (52%)

Query:    38 YVQRFCLSMAITEMA-HTEHKVSNKSL--QC---PVPVLIRNQTVNKHYEFDWDERTQGL 91
             YV R  +S+AI  M  HT  K   +    +C    +P+       ++  EF W+   QG 
Sbjct:    10 YVMRTNMSVAIVAMVNHTAIKSGEEEYDDECGDRDIPI-----DDSQDGEFPWNAALQGY 64

Query:    92 ILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXXXXXXXRSFGAVGILCARF 151
             ILSSFF+GYV+  IP  ++A++YG    LG+G               R  G  G+   RF
Sbjct:    65 ILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWGLCAVRF 124

Query:   152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
             I GLG+GP  P  + +LA+W+P  ER RMGA V+AG+
Sbjct:   125 IQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGA 161

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 59/188 (31%), Positives = 88/188 (46%)

Query:     4 IEKKQPIDIPDKPDYLISQRYLIXXXXXXXXXXTYVQRFCLSMAITEMAHTEHKVSNKSL 63
             + +K   DI   P    S RY +           Y  R  LS+A+ +M     K +  S 
Sbjct:    19 LRRKDTEDIQKAPA-CGSSRYGLAFLSCYGFFVAYALRVNLSVAMVDMLKNSSKANTSSS 77

Query:    64 QCP---VPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVL 120
              CP   +PV   N T      +DW+  TQG IL SFF+GY++  IPG  +A +YG K++L
Sbjct:    78 ICPPHNIPVPKHNHTA---MVYDWNSETQGWILGSFFYGYIITQIPGGYLARKYGAKWLL 134

Query:   121 GFGXXXXXXXXXXXXXXXRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180
             G G                  GA  ++  R + G+G+G  YP+M+ + A W P  ER R+
Sbjct:   135 GLGILCTVIFTLLTPLAA-DLGAGYLIAVRVLEGIGEGVTYPAMHAMWASWAPPLERSRL 193

Query:   181 GALVFAGS 188
               + + G+
Sbjct:   194 LTISYTGA 201

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 257 (95.5 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 61/175 (34%), Positives = 91/175 (52%)

Query:    21 SQRYLIXXXXXXXXXXTYVQRFCLSMAITEM--AHTEHKVSNKSLQC-----PVPVLIRN 73
             S RY +           Y  R  LS+A+ +M  ++T  K +  S +C     P+ VL RN
Sbjct:    37 SARYNLAFLSFFGFFVLYSLRVNLSVALVDMVDSNTTAKDNRTSYECAEHSAPIKVL-RN 95

Query:    74 QTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXX 133
             QT  K Y+  WD  TQG IL SFF+GY++  IPG  +A R GGK +LGFG          
Sbjct:    96 QT-GKKYQ--WDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLF 152

Query:   134 XXXXXRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
                    FG   ++  R + GLG+G  +P+M+ + + W P  ER ++ ++ +AG+
Sbjct:   153 TPLAA-DFGFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGA 206

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 58/175 (33%), Positives = 89/175 (50%)

Query:    21 SQRYLIXXXXXXXXXXTYVQRFCLSMAITEMAHTEHKVSNK--SLQC-----PVPVLIRN 73
             S RY +           Y  R  LS+A+ +M  +   +++   S +C     P+ VL  N
Sbjct:    37 SARYNLAVLAFFGFFVLYALRVNLSVALVDMVDSNTTLADNRTSKECAEHSAPIKVL-HN 95

Query:    74 QTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXX 133
             QT  K Y+  WD  TQG IL SFF+GY++  IPG  IA + GGK +LGFG          
Sbjct:    96 QT-GKRYQ--WDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLF 152

Query:   134 XXXXXRSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
                    FG   ++  R + GLG+G  +P+M+ + + W P  ER ++ ++ +AG+
Sbjct:   153 TPIAA-DFGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGA 206

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0042126 CG18788 [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
 Identities = 40/104 (38%), Positives = 61/104 (58%)

Query:    84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGXXXXXXXXXXXXXXXRSFGA 143
             W  +TQ L++ +F+ GYVL H+PG  +AERYGGK+VL                  R  G 
Sbjct:   135 WPRQTQSLVVMAFYAGYVLTHVPGGRLAERYGGKWVLSAAILTSAVLTLLTPTAVRQGGL 194

Query:   144 VGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
               ++  R +VG+ +GP +P++  +LAQWVP+ ERG + + V +G
Sbjct:   195 YALVAVRLLVGICEGPCFPAVCALLAQWVPEQERGMLASCVLSG 238

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-25
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-15
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-14
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	7e-14
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-10
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-06
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-06
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	2e-05
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.001

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  101 bits (254), Expect = 2e-25
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 13  PDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEM-AHTE-HKVSNKSLQCPVPVL 70
             K  Y  S R  +  L  +   +   QR CLS+ +  M        ++  S +  +  +
Sbjct: 7   STKLPYFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNI 66

Query: 71  IRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130
                  K+  F W    QGLILSS F+G ++  IP   +A +Y  K+ +G G+ +S++ 
Sbjct: 67  -------KNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVI 119

Query: 131 TLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
           ++  P AA    A+ + C R I GL QG   P+ + I+ +W P  ER R+  +  +G
Sbjct: 120 SIVIPWAAGGGIALVVFC-RVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 80  YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR 139
            +        GLI+S+F  GY L  +    +++R+G + VL  GLL+  L +L    A+ 
Sbjct: 27  EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS- 85

Query: 140 SFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
                 +L  RF++GLG G  YP+   ++A+W P  ERGR   L  AG  
Sbjct: 86  --SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFG 133

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 81  EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
           +        GL+L++F  GY L       +++R+G + VL  GLL+  L  L    A+  
Sbjct: 26  DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL 85

Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
           +  +     R + GLG G  +P+   ++A W P  ERGR   L+ AG 
Sbjct: 86  WLLLV---LRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGF 130

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 68.5 bits (168), Expect = 7e-14
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 81  EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
           +        G + S+F WGYV+   PG  + +R+G +  L   +++  + T     A   
Sbjct: 23  DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--- 79

Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
              V +   R ++G  + P +P + +I+A W P +ER    ++  +   
Sbjct: 80  GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG 128

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 90  GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
           GL+LSSF   Y ++      +++R   +  L  GL++  +  L       S     +   
Sbjct: 33  GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL---FFGFSTSLWVMAAL 89

Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183
             + G+ QG  +P     + +W  ++ERG   + 
Sbjct: 90  WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSF 123

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 81  EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
           E+  D    G + S+   G     +    +A+R G + VL + +L+ ++ TL   LA   
Sbjct: 46  EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT-- 103

Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
                +L  RF+ GLG G   P++N +++++ PK  RG    L+F G
Sbjct: 104 -NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 46/111 (41%)

Query: 79  HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA 138
                      GL+L        +  +    +++R G +  L   LL+  LA L   L +
Sbjct: 229 QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288

Query: 139 RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
            +  ++ +L A  ++G G G  +P++N +++   PK ERG    L      
Sbjct: 289 LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGS 339

Length = 346

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 81  EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
           +    +   G++ S+F   Y ++     ++++R   +Y + FGL++S +  +    +  S
Sbjct: 58  DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-S 116

Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183
                +L    + G  QG  +P     +  W  + ERG   ++
Sbjct: 117 LFLFAVLW--VLNGWFQGMGWPPCARTITHWFSRKERGTWWSI 157

Length = 448

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 89  QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGI 146
            G +    F+G+         +A++ G K V G  L++  +AT+A+ L+        +  
Sbjct: 67  IGTLAGQLFFGW---------LADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMAT 117

Query: 147 LCA-RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186
           LC  RF +G+G G  YP   +I +++  K  RG M A VFA
Sbjct: 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFA 158

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 90  GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
           G++L SF +GY         +++R+G K VL    LV+ ++ +   L A S      L  
Sbjct: 139 GVLLGSFVFGY---------LSDRFGRKKVLLLSTLVTAVSGV---LTAFSPNYTVFLVF 186

Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF 185
           R +VG+G G  +    V+  +++PK +R  +G L+ 
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQ 222

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 106 PGALI----AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAY 161
           PGAL+    A+R G K +L   + +  L +LAT  A   F    +L AR + G+G G A 
Sbjct: 65  PGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW-DFP--SLLVARLLTGVGLGGAL 121

Query: 162 PSMNVILAQWVPKTERGRMGALVFAG 187
           P++  + ++ V    RG   +L++ G
Sbjct: 122 PNLIALTSEAVGPRLRGTAVSLMYCG 147

Length = 406

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 90  GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
           GL+L+ +  G ++      L+ +R+G K VL  GL +  L+T    L+  +     ++ A
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-SNI--TVLIIA 57

Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
           RF+ G G   A  +   ++A   P  ERG    L+ AG
Sbjct: 58  RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAG 95

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 90  GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
           G +++++  G  L     AL+  R   + +L   L +  ++ L + LA  SF    +L A
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-SFAV--LLLA 107

Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
           R + GL  G  +     + A+ VP  +RGR  ALVF G
Sbjct: 108 RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG 145

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.82
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.8
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.79
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.77
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.77
TIGR00891	405	2A0112 putative sialic acid transporter.	99.77
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.77
KOG1330|consensus	493		99.76
PRK12307	426	putative sialic acid transporter; Provisional	99.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.75
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.75
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.74
KOG2532|consensus	466		99.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.74
PRK11663	434	regulatory protein UhpC; Provisional	99.74
PRK03545	390	putative arabinose transporter; Provisional	99.74
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.73
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.72
PRK10642	490	proline/glycine betaine transporter; Provisional	99.72
PRK15075	434	citrate-proton symporter; Provisional	99.71
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.71
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.71
PRK03893	496	putative sialic acid transporter; Provisional	99.71
PRK09952	438	shikimate transporter; Provisional	99.7
PLN00028	476	nitrate transmembrane transporter; Provisional	99.7
PRK09705	393	cynX putative cyanate transporter; Provisional	99.69
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.69
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.69
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.69
PRK03699	394	putative transporter; Provisional	99.69
PRK10133	438	L-fucose transporter; Provisional	99.68
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.67
TIGR00893	399	2A0114 d-galactonate transporter.	99.67
TIGR00895	398	2A0115 benzoate transport.	99.67
PRK05122	399	major facilitator superfamily transporter; Provisi	99.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.67
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.66
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.66
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.66
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.66
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.66
PRK10091	382	MFS transport protein AraJ; Provisional	99.65
PRK03633	381	putative MFS family transporter protein; Provision	99.65
PRK10504	471	putative transporter; Provisional	99.65
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.64
PRK12382	392	putative transporter; Provisional	99.64
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.63
TIGR00900	365	2A0121 H+ Antiporter protein.	99.61
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.61
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.6
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.6
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.6
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.6
TIGR00898	505	2A0119 cation transport protein.	99.6
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.59
PTZ00207	591	hypothetical protein; Provisional	99.57
PRK11043	401	putative transporter; Provisional	99.56
PRK10054	395	putative transporter; Provisional	99.55
TIGR00805	633	oat sodium-independent organic anion transporter.	99.54
PRK09874	408	drug efflux system protein MdtG; Provisional	99.54
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.54
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.53
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.52
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.51
KOG0254|consensus	513		99.51
KOG2533|consensus	495		99.49
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.48
KOG0255|consensus	521		99.46
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.44
KOG0252|consensus	538		99.41
KOG2615|consensus	451		99.41
KOG3764|consensus	464		99.4
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.4
PRK10489	417	enterobactin exporter EntS; Provisional	99.39
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.39
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.36
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.34
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.33
KOG2504|consensus	509		99.32
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.29
TIGR00901	356	2A0125 AmpG-related permease.	99.29
PRK10642	490	proline/glycine betaine transporter; Provisional	99.29
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.29
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.28
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.27
TIGR00895	398	2A0115 benzoate transport.	99.26
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.26
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.24
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.23
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.23
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.22
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.2
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.2
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.2
PRK15011	393	sugar efflux transporter B; Provisional	99.19
KOG0569|consensus	485		99.19
PRK11902	402	ampG muropeptide transporter; Reviewed	99.18
TIGR00901	356	2A0125 AmpG-related permease.	99.18
TIGR00891	405	2A0112 putative sialic acid transporter.	99.17
TIGR00900	365	2A0121 H+ Antiporter protein.	99.15
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.15
PRK12382	392	putative transporter; Provisional	99.14
PRK05122	399	major facilitator superfamily transporter; Provisi	99.13
PRK09952	438	shikimate transporter; Provisional	99.11
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
PRK03893	496	putative sialic acid transporter; Provisional	99.11
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.1
TIGR00893	399	2A0114 d-galactonate transporter.	99.1
PRK03699	394	putative transporter; Provisional	99.09
PRK15011	393	sugar efflux transporter B; Provisional	99.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.09
PRK15075	434	citrate-proton symporter; Provisional	99.08
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.08
PRK12307	426	putative sialic acid transporter; Provisional	99.08
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.07
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.07
PRK09705	393	cynX putative cyanate transporter; Provisional	99.06
PRK10489	417	enterobactin exporter EntS; Provisional	99.03
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.03
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.02
PRK10504	471	putative transporter; Provisional	99.02
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.02
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.01
PRK03545	390	putative arabinose transporter; Provisional	99.0
PRK03633	381	putative MFS family transporter protein; Provision	99.0
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.0
PRK09528	420	lacY galactoside permease; Reviewed	98.99
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.95
KOG0569|consensus	485		98.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.94
KOG0253|consensus	528		98.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.93
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.89
PRK09874	408	drug efflux system protein MdtG; Provisional	98.89
PRK09528	420	lacY galactoside permease; Reviewed	98.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.88
KOG2325|consensus	488		98.87
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.83
PRK11663	434	regulatory protein UhpC; Provisional	98.83
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.82
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.82
KOG2563|consensus	480		98.81
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.78
PF13347	428	MFS_2: MFS/sugar transport protein	98.78
PRK09848	448	glucuronide transporter; Provisional	98.78
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.77
TIGR00898	505	2A0119 cation transport protein.	98.77
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.75
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.74
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.74
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.73
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.71
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.71
PRK11043	401	putative transporter; Provisional	98.71
PRK11010	491	ampG muropeptide transporter; Validated	98.71
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.71
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.7
PRK10054	395	putative transporter; Provisional	98.68
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.68
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.67
PRK10133	438	L-fucose transporter; Provisional	98.66
PRK10091	382	MFS transport protein AraJ; Provisional	98.62
COG0477	338	ProP Permeases of the major facilitator superfamil	98.6
KOG4686|consensus	459		98.6
PLN00028	476	nitrate transmembrane transporter; Provisional	98.6
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.59
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.59
PRK09669	444	putative symporter YagG; Provisional	98.58
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.56
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.56
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.54
KOG0253|consensus	528		98.53
PRK10429	473	melibiose:sodium symporter; Provisional	98.52
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.51
PRK09669	444	putative symporter YagG; Provisional	98.51
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.49
PRK11902	402	ampG muropeptide transporter; Reviewed	98.48
KOG2504|consensus	509		98.47
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.47
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.45
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.4
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.38
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.38
PRK10429	473	melibiose:sodium symporter; Provisional	98.38
KOG4686|consensus	459		98.37
COG2211	467	MelB Na+/melibiose symporter and related transport	98.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.33
PF12832	77	MFS_1_like: MFS_1 like family	98.33
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.28
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.26
PRK11462	460	putative transporter; Provisional	98.2
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.18
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.17
KOG3762|consensus	618		98.14
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.14
KOG0254|consensus	513		98.14
PF13347	428	MFS_2: MFS/sugar transport protein	98.05
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.02
PRK09848	448	glucuronide transporter; Provisional	97.99
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.74
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.73
PRK11462	460	putative transporter; Provisional	97.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.61
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.61
COG2211	467	MelB Na+/melibiose symporter and related transport	97.59
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.5
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.49
KOG2533|consensus	495		97.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.41
KOG3764|consensus	464		97.41
KOG2816|consensus	463		97.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.18
KOG2816|consensus	463		97.15
KOG0637|consensus	498		97.06
KOG2615|consensus	451		96.92
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.92
KOG2532|consensus	466		96.89
KOG0255|consensus	521		96.84
KOG4332|consensus	454		96.82
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.8
PTZ00207	591	hypothetical protein; Provisional	96.63
KOG0252|consensus	538		96.63
KOG3626|consensus	735		96.6
KOG3762|consensus	618		96.56
KOG3098|consensus	461		96.48
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.37
TIGR00805	633	oat sodium-independent organic anion transporter.	96.24
KOG2563|consensus	480		96.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.56
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.85
KOG1330|consensus	493		94.28
KOG3098|consensus	461		94.08
PRK03612	521	spermidine synthase; Provisional	93.78
KOG1237|consensus	571		92.8
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	91.76
KOG4332|consensus	454		91.31
KOG3097|consensus	390		89.99
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	88.92
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	87.49
KOG0637|consensus	498		86.98
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	86.77
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.52
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	85.3
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	84.04
KOG3574|consensus	510		82.97

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.82  E-value=1.4e-19  Score=145.47  Aligned_cols=136  Identities=21%  Similarity=0.347  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312          22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV  101 (189)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (189)
                      .+|....++++.++..+.++..+++..|.+.                           +++|++..+.+++.+++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~---------------------------~~~~~s~~~~g~~~s~~~~~~~   57 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMG---------------------------KDLGLSATMFGLAATLFYAAYV   57 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhH---------------------------hhcCCCHHHHHHHHHHHHHHHH
Confidence            3566777788899999999999999999888                           8999999999999999999999


Q ss_pred             HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312         102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG  181 (189)
Q Consensus       102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  181 (189)
                      +++++.|++.||+|||+++..+.++..++.++.+++++   ++.+++.|+++|++.+...+....++.||+|+++|++++
T Consensus        58 ~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~  134 (412)
T TIGR02332        58 ICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG---PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARAN  134 (412)
T ss_pred             HHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHH
Confidence            99999999999999999999999999999999999888   889999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy3312         182 ALVFAG  187 (189)
Q Consensus       182 ~~~~~~  187 (189)
                      ++++.+
T Consensus       135 ~~~~~~  140 (412)
T TIGR02332       135 ALFMIA  140 (412)
T ss_pred             HHHHHH
Confidence            998754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.80  E-value=1.2e-19  Score=148.08  Aligned_cols=135  Identities=19%  Similarity=0.231  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      .+.++.+.++.++..+.++..++...|.+.                           +++|++..+.+++.+.+.+++.+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~---------------------------~~~~~s~~~~g~~~s~~~~~~~~   79 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMI---------------------------STYGLSTTELGMIGLGFSITYGV   79 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHHH
Confidence            455677788888899999999999999998                           89999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-----ARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER  177 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r  177 (189)
                      ++++.|+++||+|||+++..++++.++..++.+..     ++   ++.+++.|+++|++.+...+....+++||+|+++|
T Consensus        80 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  156 (467)
T PRK09556         80 GKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS---LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR  156 (467)
T ss_pred             HHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce
Confidence            99999999999999999999988888777766653     44   88999999999999999999999999999999999


Q ss_pred             hhHHHHHhhc
Q psy3312         178 GRMGALVFAG  187 (189)
Q Consensus       178 ~~~~~~~~~~  187 (189)
                      ++++|++..+
T Consensus       157 g~a~gi~~~~  166 (467)
T PRK09556        157 GRFLGFWNIS  166 (467)
T ss_pred             eeeEEeeecc
Confidence            9998887654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.9e-19  Score=140.73  Aligned_cols=139  Identities=19%  Similarity=0.321  Sum_probs=132.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312          19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW   98 (189)
Q Consensus        19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (189)
                      .+++|+.+++.+++++...+..+..++.+.|.+.                           ++.++|.+|.+++.+.+.+
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~---------------------------e~~~lsk~~lG~i~s~f~i   75 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALI---------------------------EDGGLSKTQLGILGSAFSI   75 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHH---------------------------HhcCCCHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999                           8899999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312          99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG  178 (189)
Q Consensus        99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~  178 (189)
                      .+.++..+.|.++||.++|+.+.+++++.++.+++++++++   .+.+.++.+++|+.+|..+|.+...+.+|+|++|||
T Consensus        76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG  152 (448)
T COG2271          76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG  152 (448)
T ss_pred             HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC
Confidence            99999999999999999999999999999999999999997   889999999999999999999999999999999999


Q ss_pred             hHHHHHhhc
Q psy3312         179 RMGALVFAG  187 (189)
Q Consensus       179 ~~~~~~~~~  187 (189)
                      +..++++.+
T Consensus       153 ~~~siWn~s  161 (448)
T COG2271         153 TWWSIWNTS  161 (448)
T ss_pred             ceEEEehhh
Confidence            999988764

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.77  E-value=8.9e-18  Score=134.60  Aligned_cols=120  Identities=15%  Similarity=0.067  Sum_probs=113.2

Q ss_pred             HHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccc-hhHHHHHHHHHHHHhhhhhhhhhhhhCC
Q psy3312          38 YVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERT-QGLILSSFFWGYVLNHIPGALIAERYGG  116 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~  116 (189)
                      .-.+...+++.|.+.                           +++|+++.+ .+.+.++++.++++..++.|+++||+|.
T Consensus        39 ~e~R~n~s~a~p~L~---------------------------~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~   91 (511)
T TIGR00806        39 AQFRPGESFITPYLL---------------------------TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRY   91 (511)
T ss_pred             HHhhchHHHHHHHHH---------------------------HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            346788899999998                           899999999 9999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         117 KYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       117 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      |+++..+.+.+.+..++.+++.+   ++.+.+.|++.|+++|..+ +...++..|+|+++|+++.|++.++.
T Consensus        92 K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~  159 (511)
T TIGR00806        92 KPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAV  159 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999888   8899999999999999999 99999999999999999999988764

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.77  E-value=6.5e-18  Score=137.62  Aligned_cols=163  Identities=30%  Similarity=0.552  Sum_probs=131.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312          19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW   98 (189)
Q Consensus        19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (189)
                      ..+.|+.+..+++++....+.++..++...+.+.++....   ...|.  ....+.....+++++++..+.+++.+.+.+
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~   87 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENST---DLACL--SAENELDNIKNPNFKWSGALQGLILSSHFY   87 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCC---Ccccc--ccccccccccCCCCCCCHHHhhHHHHHHHH
Confidence            3556888888899999999999999999888776432111   11111  111122233446899999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312          99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG  178 (189)
Q Consensus        99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~  178 (189)
                      ++.+++++.|+++||+|||+++..+.++..++.++..++.... ++.+++.|+++|++.+..++....+++||+|+++|+
T Consensus        88 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~  166 (465)
T TIGR00894        88 GQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG-IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS  166 (465)
T ss_pred             HHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999988888776553322 678899999999999999999999999999999999


Q ss_pred             hHHHHHhhc
Q psy3312         179 RMGALVFAG  187 (189)
Q Consensus       179 ~~~~~~~~~  187 (189)
                      ++.++...+
T Consensus       167 ~~~~~~~~~  175 (465)
T TIGR00894       167 RLLGMSTSG  175 (465)
T ss_pred             HHHHHHHHH
Confidence            999998765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.77  E-value=1.5e-17  Score=132.33  Aligned_cols=137  Identities=20%  Similarity=0.334  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      +.+|..+..+++.++....+....+...+.+.                           +++|++..+.+++.+.+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------~~~~~s~~~~g~~~~~~~~~~   60 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVA---------------------------GEFGLTTVDAASLISAALISR   60 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCChhhHHHHHHHHHHHH
Confidence            34667777788999999999999999999998                           899999999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      .++.++.|+++||+|||+++..+.++..++.++..++++   ++.+++.|++.|++.+..++....++.|++|+++|+++
T Consensus        61 ~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~  137 (405)
T TIGR00891        61 WFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG---YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKA  137 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHH
Confidence            999999999999999999999999999999998888877   88999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy3312         181 GALVFAG  187 (189)
Q Consensus       181 ~~~~~~~  187 (189)
                      .++...+
T Consensus       138 ~~~~~~~  144 (405)
T TIGR00891       138 SGLLISG  144 (405)
T ss_pred             HHHHHHH
Confidence            9987654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.77  E-value=1.6e-17  Score=134.23  Aligned_cols=137  Identities=13%  Similarity=0.089  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeee---ccccchhH---HHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFD---WDERTQGL---ILSSF   96 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~   96 (189)
                      ++..+....++.+..+.++..+++..|.+.                           ++++   .+..+.+.   +.+..
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~---------------------------~~~~~~~~~~~~~~~~~~~~~~~   72 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFA---------------------------HIFFPSGNTTTQLLQTAGVFAAG   72 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCCCchHHHHHHHHHHHHH
Confidence            444555577888899999999999999887                           5653   33443333   33445


Q ss_pred             HHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-----hhHHHHHHHHHHhhccccchhHHHHHHHhh
Q psy3312          97 FWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-----GAVGILCARFIVGLGQGPAYPSMNVILAQW  171 (189)
Q Consensus        97 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~  171 (189)
                      .++..++++++|+++||+|||+++..+.+++++++++.+++++..     ....+++.|+++|++.|+.++...++++|+
T Consensus        73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  152 (432)
T PRK10406         73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV  152 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence            555669999999999999999999999999999999998887631     124688999999999999999999999999


Q ss_pred             cCccchhhHHHHHhh
Q psy3312         172 VPKTERGRMGALVFA  186 (189)
Q Consensus       172 ~~~~~r~~~~~~~~~  186 (189)
                      +|+++|+++.++...
T Consensus       153 ~p~~~rg~~~~~~~~  167 (432)
T PRK10406        153 AVEGRKGFYASFQYV  167 (432)
T ss_pred             CCCCcccHHHHHHHH
Confidence            999999998887543

>KOG1330|consensus

Probab=99.76  E-value=3.5e-18  Score=134.94  Aligned_cols=136  Identities=21%  Similarity=0.363  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      .+....+.++...+++.++..+....+...                           +.+|++++..|++++++.+.+++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~---------------------------~~fni~~s~~Gll~~vf~v~~~i   83 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQ---------------------------TYFNISDSELGLLQTVFIVVFMI   83 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHH---------------------------HhcCCCchhccchhHHHHHHHHH
Confidence            445566688888999999999888777776                           89999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA  182 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  182 (189)
                      ..|++|+++||++||+++.+|..++.++.++.+++.+   +|+++++|.+.|+|.+...+..+++++|.||.++|+++++
T Consensus        84 ~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~  160 (493)
T KOG1330|consen   84 ASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLG  160 (493)
T ss_pred             HHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHH
Confidence            9999999999999999999999999999999999977   9999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy3312         183 LVFAGS  188 (189)
Q Consensus       183 ~~~~~~  188 (189)
                      +++.+.
T Consensus       161 ify~~i  166 (493)
T KOG1330|consen  161 IFYFAI  166 (493)
T ss_pred             Hhhhhc
Confidence            998764

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.75  E-value=3e-17  Score=132.07  Aligned_cols=137  Identities=15%  Similarity=0.271  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      +.++.....+.+.++....+.....+..|.+.                           +++|+++.+.+++.+.+.+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------------------------~~~~~s~~~~~~~~~~~~~~~   66 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIK---------------------------ADLGLTDMEGAFLATAAFIGR   66 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHH
Confidence            34555566778888888888888888999888                           899999999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      .+++++.|+++||+|||+++..+.++.+++.++.+++++   ++.+++.|+++|++.+..++....++.|++|+++|+++
T Consensus        67 ~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~  143 (426)
T PRK12307         67 PFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG---VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA  143 (426)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence            999999999999999999999999999999999998887   88999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy3312         181 GALVFAG  187 (189)
Q Consensus       181 ~~~~~~~  187 (189)
                      .++...+
T Consensus       144 ~~~~~~~  150 (426)
T PRK12307        144 SAFLVSG  150 (426)
T ss_pred             hhHHHHH
Confidence            9987654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.75  E-value=2.4e-17  Score=140.03  Aligned_cols=136  Identities=16%  Similarity=0.221  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      +..|.+++++.++.+....+...++...|.+.                           .+++++..+.+++.+++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~---------------------------~~~gls~~~~g~l~s~~~lG~  215 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAE---------------------------KDLCIPDSGKGMLGLIVYLGM  215 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHH
Confidence            44666767777777777777888888889887                           789999999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      +++.+++|+++||+|||+++++++++.+++.++.+++++   ++.++++|+++|++.|+..+....++.|++|+++|++.
T Consensus       216 iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s---~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~  292 (742)
T TIGR01299       216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG---YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEH  292 (742)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            999999999999999999999999999999999888887   88999999999999999999999999999999999998


Q ss_pred             HHHHhh
Q psy3312         181 GALVFA  186 (189)
Q Consensus       181 ~~~~~~  186 (189)
                      +++..+
T Consensus       293 ~g~~~~  298 (742)
T TIGR01299       293 LSWLCM  298 (742)
T ss_pred             HHHHHH
Confidence            887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.75  E-value=3.5e-17  Score=132.27  Aligned_cols=132  Identities=12%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312          24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN  103 (189)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (189)
                      ++.+.+..++....+......+++.+.+.                          +.++|++++|.+++.++..+++.+.
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~--------------------------~~~~~ls~~q~g~l~ai~~l~~al~   86 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLN--------------------------KIGFNFTTDQLFLLTALPSVSGALL   86 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            45666688888888888999999888876                          1489999999999999999999999


Q ss_pred             hhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312         104 HIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-----ARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG  178 (189)
Q Consensus       104 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~  178 (189)
                      .++.|++.||+|.|+++.++.++..+..++.+++     ++   ++.+++.|++.|++ +..++.....+++|+|+++||
T Consensus        87 rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG  162 (462)
T PRK15034         87 RVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG  162 (462)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH
Confidence            9999999999999999999999999999988876     44   88999999999998 778999999999999999999


Q ss_pred             hHHHHHh
Q psy3312         179 RMGALVF  185 (189)
Q Consensus       179 ~~~~~~~  185 (189)
                      ++.|+..
T Consensus       163 ~A~Gi~~  169 (462)
T PRK15034        163 SALGING  169 (462)
T ss_pred             HHHHHHH
Confidence            9999984

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.74  E-value=5e-17  Score=130.04  Aligned_cols=137  Identities=28%  Similarity=0.333  Sum_probs=124.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      +++|.+..++++..+....+....+...|.+.                           +++|+++.+.+++.+.+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~g~~~~~~~~~~   63 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMA---------------------------QEFGLDVAQMGWAFSAGILGL   63 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHH
Confidence            35777777788888888888999999999998                           889999999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      .++.++.|+++||+|||+++..+.++..++.++..+.++   ++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        64 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  140 (406)
T PRK11551         64 LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD---FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTA  140 (406)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            999999999999999999999999999888888888777   88999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy3312         181 GALVFAG  187 (189)
Q Consensus       181 ~~~~~~~  187 (189)
                      +++.+.+
T Consensus       141 ~~~~~~~  147 (406)
T PRK11551        141 VSLMYCG  147 (406)
T ss_pred             HHHHHHH
Confidence            9987654

>KOG2532|consensus

Probab=99.74  E-value=2e-17  Score=134.15  Aligned_cols=109  Identities=46%  Similarity=0.830  Sum_probs=104.4

Q ss_pred             ceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          79 HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +.++++++.+.+++.+.+++|+++++++.|+++||+|.|+++..+.++.++.+++.+++.+.+ ++.+++.|++||+++|
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl~~g  143 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGLGQG  143 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999998877 7788999999999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      ..+|++..+.++|+|++||++..++.+++.
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~  173 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGS  173 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998875

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.74  E-value=4.1e-17  Score=134.11  Aligned_cols=135  Identities=16%  Similarity=0.154  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      +|..+..+.++.+....+...++...|.+.                           +++|.+..+.+|+.+.+.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~---------------------------~~l~~s~~~~~~~~~~~~l~~~~   56 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLS---------------------------MTLGASGNELLWIIDIYSLVMAG   56 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHhHHHHHHHHHHHHHHH
Confidence            456777788999999999999999999998                           89999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc-CccchhhHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV-PKTERGRMG  181 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~  181 (189)
                      +.++.|+++||+|||+++..+.++..++.++++++++   ++.++++|+++|++.+...+.....+.+++ |+++|+++.
T Consensus        57 ~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~  133 (495)
T PRK14995         57 MVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPT---ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMAL  133 (495)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999888   889999999999999988888888887776 678999999


Q ss_pred             HHHhhc
Q psy3312         182 ALVFAG  187 (189)
Q Consensus       182 ~~~~~~  187 (189)
                      +++...
T Consensus       134 g~~~~~  139 (495)
T PRK14995        134 GVWAAV  139 (495)
T ss_pred             HHHHHH
Confidence            987653

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.74  E-value=2.8e-17  Score=133.01  Aligned_cols=136  Identities=21%  Similarity=0.389  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312          22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV  101 (189)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (189)
                      .|+.+....++.++..+.++..++...|.+.                           +++|++..+.+++.+.+.++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~   72 (434)
T PRK11663         20 WRRHILITMYLGYALFYFTRKSFNAAMPEML---------------------------ADLGLSRSDIGLLATLFYITYG   72 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHH
Confidence            4556666677777888888888888999998                           8899999999999999999999


Q ss_pred             HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312         102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG  181 (189)
Q Consensus       102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  181 (189)
                      +++++.|++.||+|||+++.++.++.+++.++.+++++   ++.+++.|++.|++.|..++....++.|++|+++|++++
T Consensus        73 ~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~  149 (434)
T PRK11663         73 VSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS---LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWW  149 (434)
T ss_pred             HHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999888887   888999999999999988999999999999999999999


Q ss_pred             HHHhhc
Q psy3312         182 ALVFAG  187 (189)
Q Consensus       182 ~~~~~~  187 (189)
                      ++.+.+
T Consensus       150 ~~~~~~  155 (434)
T PRK11663        150 AIWNTA  155 (434)
T ss_pred             HHHHHH
Confidence            988654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.74  E-value=3.4e-17  Score=130.60  Aligned_cols=105  Identities=15%  Similarity=0.221  Sum_probs=99.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++.++++   ++.+++.|+++|++.+.
T Consensus        37 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~~~~~  113 (390)
T PRK03545         37 QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN---FTVLLISRIGIAFAHAI  113 (390)
T ss_pred             hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999888   88999999999999988


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .++...+++.|++|+++|++++++...+
T Consensus       114 ~~~~~~~~i~~~~~~~~r~~~~g~~~~~  141 (390)
T PRK03545        114 FWSITASLAIRVAPAGKKAQALSLLATG  141 (390)
T ss_pred             HHHHHHHHHHHhCChhhhhhHHHHHHHH
Confidence            8899999999999999999999987654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.73  E-value=6.7e-17  Score=127.17  Aligned_cols=133  Identities=26%  Similarity=0.279  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhh
Q psy3312          25 LIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNH  104 (189)
Q Consensus        25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (189)
                      ...+...++.|.............|.+.                           +++|++...+|++.+.|.++..++.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA---------------------------~dl~vs~~~aG~lis~yAl~~ai~a   65 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIA---------------------------ADLGVSEGAAGQLITAYALGVALGA   65 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3444466666777777888888899998                           9999999999999999999999999


Q ss_pred             hhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         105 IPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       105 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ++...+.||+.||++++..+.++.+++++.+++++   ++.++++|++.|+..|..++....+.++..||++|++++++.
T Consensus        66 p~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv  142 (394)
T COG2814          66 PLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS---FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV  142 (394)
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence            99999999999999999999999999999999999   999999999999999999999999999999999999999998


Q ss_pred             hhc
Q psy3312         185 FAG  187 (189)
Q Consensus       185 ~~~  187 (189)
                      +.|
T Consensus       143 ~~G  145 (394)
T COG2814         143 FTG  145 (394)
T ss_pred             HHH
Confidence            876

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.72  E-value=2.3e-16  Score=126.20  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=99.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++++   ++.+++.|+++|++.+.
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~  124 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS---FSLLLIGRACLGLALGG  124 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh---HHHHHHHHHHHHHhhHH
Confidence            889999999999999999999999999999999999999999999999999988888877   89999999999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....++.|++|+++|+++.++...+
T Consensus       125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~  152 (394)
T PRK10213        125 FWAMSASLTMRLVPPRTVPKALSVIFGA  152 (394)
T ss_pred             HHHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence            9999999999999999999999987653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.72  E-value=2.4e-16  Score=129.44  Aligned_cols=136  Identities=16%  Similarity=0.239  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccc-hhH-----HHHHHHH
Q psy3312          25 LIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERT-QGL-----ILSSFFW   98 (189)
Q Consensus        25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~   98 (189)
                      ..+....++.++.+.+...+++..+.+.                           ++++.+..+ ..+     +.++..+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~l   68 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALG---------------------------KVFFPGADPSVQMIAALATFSVPFL   68 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhhCCCCCcHHHHHHHHHHHHHHHH
Confidence            4555677888899999999999999887                           555433222 122     2467788


Q ss_pred             HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312          99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-----AVGILCARFIVGLGQGPAYPSMNVILAQWVP  173 (189)
Q Consensus        99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  173 (189)
                      +..++++++|+++||+|||+++..++++.++++++++++++...     ...++++|+++|++.|+.++....+++|++|
T Consensus        69 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p  148 (490)
T PRK10642         69 IRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP  148 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999988321     0137899999999999999999999999999


Q ss_pred             ccchhhHHHHHhhc
Q psy3312         174 KTERGRMGALVFAG  187 (189)
Q Consensus       174 ~~~r~~~~~~~~~~  187 (189)
                      +++|+++.++...+
T Consensus       149 ~~~Rg~~~~~~~~~  162 (490)
T PRK10642        149 DRKRGFMGSWLDFG  162 (490)
T ss_pred             CCCCcHHHHHHHHH
Confidence            99999998876643

>PRK15075 citrate-proton symporter; Provisional

Probab=99.71  E-value=1.9e-16  Score=128.10  Aligned_cols=134  Identities=18%  Similarity=0.098  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHH-HHH-----
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLIL-SSF-----   96 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----   96 (189)
                      |+......+++.+..+.++..+++..|.+.                           ++++.++.+.+.+. +..     
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~---------------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIA---------------------------KTFFPAGNEFASLMLTFAVFGAG   65 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCCCchHHHHHHHHHHHHH
Confidence            445666788899999999999999999998                           88888777765433 222     


Q ss_pred             HHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhH--------HHHHHHHHHhhccccchhHHHHHH
Q psy3312          97 FWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAV--------GILCARFIVGLGQGPAYPSMNVIL  168 (189)
Q Consensus        97 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~  168 (189)
                      .++..+++++.|+++||+|||++++.+.++..++..+++++++   ++        .++++|+++|++.+...+....++
T Consensus        66 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  142 (434)
T PRK15075         66 FLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYL  142 (434)
T ss_pred             HHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Confidence            2223468899999999999999999999999999999998887   44        468999999999999999899999


Q ss_pred             HhhcCccchhhHHHHHhh
Q psy3312         169 AQWVPKTERGRMGALVFA  186 (189)
Q Consensus       169 ~~~~~~~~r~~~~~~~~~  186 (189)
                      +|++|+++|++++++...
T Consensus       143 ~e~~p~~~rg~~~~~~~~  160 (434)
T PRK15075        143 AEIATPGRKGFYTSWQSA  160 (434)
T ss_pred             HhhCCcccchHHHHHHHH
Confidence            999999999999987654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.71  E-value=9.5e-17  Score=131.00  Aligned_cols=146  Identities=16%  Similarity=0.171  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      .+...++..++.+....+...++...+.+.+....+.                   ..++++++.+.+++.+++.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~s~~~ig~~~   70 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQ-------------------NLSESAANSLLGFCVASALIGCII   70 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccc-------------------cccccCChhHHHHHHHHHHHHHHH
Confidence            4445555666767777777777777777762221111                   145688999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh---------hchhhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA---------RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVP  173 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  173 (189)
                      +++++|+++||+|||+++..+.++..++.++.++..         +...++.++++|+++|++.|+..+....+++|++|
T Consensus        71 ~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~  150 (479)
T PRK10077         71 GGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP  150 (479)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC
Confidence            999999999999999999999999888887766531         21224677899999999999999999999999999


Q ss_pred             ccchhhHHHHHhhc
Q psy3312         174 KTERGRMGALVFAG  187 (189)
Q Consensus       174 ~~~r~~~~~~~~~~  187 (189)
                      +++|++++++...+
T Consensus       151 ~~~rg~~~~~~~~~  164 (479)
T PRK10077        151 AHIRGKLVSFNQFA  164 (479)
T ss_pred             hhhhhHHHHHHHHH
Confidence            99999999987643

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.71  E-value=1.4e-16  Score=129.58  Aligned_cols=139  Identities=19%  Similarity=0.297  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      +.+|.++...++.....+.++..++...|.+.                           ++ |++..+.+++.+.+.+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~---------------------------~~-g~s~~~~g~~~~~~~i~~   76 (452)
T PRK11273         25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------------------------EQ-GFSRGDLGFALSGISIAY   76 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---------------------------Hc-CCCHHHHHHHHHHHHHHH
Confidence            34455555566666666677777778888887                           66 999999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGR  179 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~  179 (189)
                      ++++++.|+++||+|||++++.+.++.+++.++.++++.. .+++.+++.|++.|++.+..++.....+.+++|+++|++
T Consensus        77 ~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~  156 (452)
T PRK11273         77 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  156 (452)
T ss_pred             HHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHH
Confidence            9999999999999999999999999999888888776421 127788899999999999888888889999999999999


Q ss_pred             HHHHHhhc
Q psy3312         180 MGALVFAG  187 (189)
Q Consensus       180 ~~~~~~~~  187 (189)
                      ++++++.+
T Consensus       157 ~~~~~~~~  164 (452)
T PRK11273        157 IVSVWNCA  164 (452)
T ss_pred             HHHHHHHH
Confidence            99987654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.71  E-value=4.4e-16  Score=127.69  Aligned_cols=136  Identities=18%  Similarity=0.320  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312          22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV  101 (189)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (189)
                      .++..+..+++..+....+....+...|.+.                           +++|+++.+.+++.+.+.++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------------------------~~~~~s~~~~~~~~~~~~~~~~   69 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQ---------------------------GEFGLTTVQAASLISAAFISRW   69 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHH
Confidence            4556666778888888888888888889988                           8899999999999999999999


Q ss_pred             HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312         102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG  181 (189)
Q Consensus       102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  181 (189)
                      ++.++.|+++||+|||+++..+.++.+++.++..+.++   ++.+++.|++.|++.+..++....++.|++|+++|+++.
T Consensus        70 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  146 (496)
T PRK03893         70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPG---YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKAS  146 (496)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            99999999999999999999999999999998888877   889999999999999999999999999999999999998


Q ss_pred             HHHhhc
Q psy3312         182 ALVFAG  187 (189)
Q Consensus       182 ~~~~~~  187 (189)
                      ++...+
T Consensus       147 ~~~~~~  152 (496)
T PRK03893        147 GFLISG  152 (496)
T ss_pred             HHHHHH
Confidence            887654

>PRK09952 shikimate transporter; Provisional

Probab=99.70  E-value=5.9e-16  Score=125.45  Aligned_cols=146  Identities=16%  Similarity=0.157  Sum_probs=112.9

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceee--eccccchhHH
Q psy3312          15 KPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEF--DWDERTQGLI   92 (189)
Q Consensus        15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   92 (189)
                      ......++++......++..+..+.+...++...+....                          +++  +.++. .+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~-~~~~   64 (438)
T PRK09952         12 EGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFN--------------------------REFFPQVSPA-MGTL   64 (438)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhcCCCCCcH-HHHH
Confidence            333344556667777888889999999988887765431                          233  44444 3443


Q ss_pred             H-----HHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHhhccccchh
Q psy3312          93 L-----SSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-----AVGILCARFIVGLGQGPAYP  162 (189)
Q Consensus        93 ~-----~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~g~~~~  162 (189)
                      .     ++..++..+++++.|+++||+|||+++..+.++++++.++++++++...     .+.++++|+++|++.|+.++
T Consensus        65 ~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  144 (438)
T PRK09952         65 AAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWG  144 (438)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence            2     3455667899999999999999999999999999999999999888220     11578899999999999999


Q ss_pred             HHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         163 SMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       163 ~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ....++.|++|+++|++..+....+
T Consensus       145 ~~~~~~~e~~p~~~rg~~~~~~~~g  169 (438)
T PRK09952        145 GAALLAVESAPKNKKAFYSSGVQVG  169 (438)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            9999999999999999887776554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.70  E-value=5e-16  Score=127.15  Aligned_cols=130  Identities=15%  Similarity=0.264  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhh
Q psy3312          26 IGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHI  105 (189)
Q Consensus        26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (189)
                      .........+.........++..|.+.                           +++|++..+.+++.+.+.+++.++++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------~~~gls~~~~g~~~~~~~~~~~~~~~   89 (476)
T PLN00028         37 AFHLSWISFFTCFVSTFAAAPLLPIIR---------------------------DNLNLTKSDIGNAGIASVSGSIFSRL   89 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333455555666666666777788887                           89999999999999999999999999


Q ss_pred             hhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         106 PGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       106 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      +.|+++||+|||+++..+.++.+++.++.+++++   ++.+++.|+++|++.+.. .....+++|++|+++|++++++.+
T Consensus        90 ~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~  165 (476)
T PLN00028         90 AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS---ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAA  165 (476)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHH
Confidence            9999999999999999999999999888888877   778889999999988764 445668899999999999999875


Q ss_pred             h
Q psy3312         186 A  186 (189)
Q Consensus       186 ~  186 (189)
                      .
T Consensus       166 ~  166 (476)
T PLN00028        166 G  166 (476)
T ss_pred             H
Confidence            3

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.69  E-value=2e-16  Score=126.41  Aligned_cols=115  Identities=11%  Similarity=0.112  Sum_probs=107.2

Q ss_pred             hhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH
Q psy3312          42 FCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG  121 (189)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~  121 (189)
                      ...++..|.+.                           +++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus        26 ~~~~~~lp~i~---------------------------~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~   78 (393)
T PRK09705         26 TSVGPLLPQLR---------------------------QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVA   78 (393)
T ss_pred             hccchhHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHH
Confidence            56778889998                           899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         122 FGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+..+.+++.++.+++++   ++.+++.|+++|++.+...+....++.+++| ++|+++++++..+
T Consensus        79 ~~~~l~~~~~~~~~~a~~---~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~  140 (393)
T PRK09705         79 ISLLLIAVGALMRELYPQ---SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAA  140 (393)
T ss_pred             HHHHHHHHHHHHHHHCcc---hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHH
Confidence            999999999999999988   8899999999999999999999999999997 8899999987643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.69  E-value=3.2e-16  Score=127.94  Aligned_cols=131  Identities=19%  Similarity=0.252  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhh
Q psy3312          27 GLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIP  106 (189)
Q Consensus        27 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (189)
                      +..+.++.+....+....+...|.+.                           +++|.+..+.+++.+.+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~---------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~   56 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIA---------------------------GDLGSSLSQVQWVITSYMLANAISIPL   56 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhcCCChhhhhHHHHHHHHHHHHHHHh
Confidence            44566677777888888889999998                           889999999999999999999999999


Q ss_pred             hhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         107 GALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       107 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .|+++||+|||+++..+.++..++.+++.++++   ++.+++.|+++|++.+...+....++.|++|+++|+++.+++..
T Consensus        57 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  133 (485)
T TIGR00711        57 TGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN---LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGL  133 (485)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887   88999999999999999999999999999999999999998765


Q ss_pred             c
Q psy3312         187 G  187 (189)
Q Consensus       187 ~  187 (189)
                      +
T Consensus       134 ~  134 (485)
T TIGR00711       134 T  134 (485)
T ss_pred             H
Confidence            3

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.69  E-value=1.1e-16  Score=125.86  Aligned_cols=126  Identities=16%  Similarity=0.276  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312          31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI  110 (189)
Q Consensus        31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  110 (189)
                      .+........+...+...|.+.                           +++|++..+.+++.+.+.++..+++++.|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l   61 (377)
T TIGR00890         9 TVIMCFTSGYVYTWTLLAPPLG---------------------------RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLL   61 (377)
T ss_pred             HHHHHHHhhHHhhhhhHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3333344445667788889998                           8999999999999999999999999999999


Q ss_pred             hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +||+|||+++..+.++..++.++.+++++   ++.+++.|++.|++.+..++.....+.+++| ++|+++.++...+
T Consensus        62 ~d~~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  134 (377)
T TIGR00890        62 ADKFGPRAVAMLGGILYGLGFTFYAIADS---LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGG  134 (377)
T ss_pred             HHHcCccchhHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHh
Confidence            99999999999999999999999999888   8899999999999999888888889999996 6899999988765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.69  E-value=2.1e-16  Score=127.80  Aligned_cols=104  Identities=23%  Similarity=0.371  Sum_probs=93.4

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhH
Q psy3312          84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPS  163 (189)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  163 (189)
                      .+..+.+++.+++.++..++.+++|+++||+|||+++..+.++..++.++..+.....+++.+++.|+++|++.+...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  147 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL  147 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence            45889999999999999999999999999999999999999999999888866654333668999999999999999999


Q ss_pred             HHHHHHhhcCccchhhHHHHHhhc
Q psy3312         164 MNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       164 ~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...++.|++|+++|+++.++.+.+
T Consensus       148 ~~~~i~~~~~~~~r~~~~~~~~~~  171 (481)
T TIGR00879       148 VPMYLSEIAPKALRGALTSLYQLA  171 (481)
T ss_pred             HHHHHHccCChhhhhhhhhHHHHH
Confidence            999999999999999999987654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03699 putative transporter; Provisional

Probab=99.69  E-value=4.3e-16  Score=124.50  Aligned_cols=133  Identities=18%  Similarity=0.173  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      |+.+...+++.++........++...|.+.                           +++|++.++.+++.+.+.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~---------------------------~~~~~s~~~~g~~~s~~~~~~~i   57 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIA---------------------------EYFNLPVSSMSNTFTFLNAGILI   57 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHH
Confidence            455555667777777777888889999998                           88999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA  182 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  182 (189)
                      ++++.|++.||+|||+++..+.++..++.++..++++   ++.+++.|+++|++.+...+....++.|++|+++|++..+
T Consensus        58 ~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  134 (394)
T PRK03699         58 SIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHS---LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLL  134 (394)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHH
Confidence            9999999999999999999999999999998888877   8889999999999999888888999999999999999887


Q ss_pred             HHh
Q psy3312         183 LVF  185 (189)
Q Consensus       183 ~~~  185 (189)
                      +.+
T Consensus       135 ~~~  137 (394)
T PRK03699        135 FTD  137 (394)
T ss_pred             HHH
Confidence            654

>PRK10133 L-fucose transporter; Provisional

Probab=99.68  E-value=1.2e-15  Score=123.67  Aligned_cols=129  Identities=20%  Similarity=0.210  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhh
Q psy3312          28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPG  107 (189)
Q Consensus        28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (189)
                      ....+.++.....+.......|.+.                           +++|+++.+.+++.+.+.+++.+++++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i~---------------------------~~~~~s~~~~gl~~~~~~~g~~i~~~~~   81 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQFQ---------------------------QAFTLTNFQAGLIQSAFYFGYFIIPIPA   81 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355555666677788888899988                           8999999999999999999999999999


Q ss_pred             hhhhhhhCCchhHHHHHHHHHHHHHHHH---HHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         108 ALIAERYGGKYVLGFGLLVSTLATLATP---LAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       108 g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      |++.||+|||+++..+.++.+++.+++.   .+++   ++.+++.|+++|++.+...+..+.++.++.|+++|.+.+++.
T Consensus        82 g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~  158 (438)
T PRK10133         82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA  158 (438)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHH
Confidence            9999999999999999999999997753   3445   889999999999999999999999999987777776656655


Q ss_pred             hh
Q psy3312         185 FA  186 (189)
Q Consensus       185 ~~  186 (189)
                      ..
T Consensus       159 ~~  160 (438)
T PRK10133        159 QT  160 (438)
T ss_pred             HH
Confidence            43

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.67  E-value=1.1e-15  Score=123.12  Aligned_cols=128  Identities=21%  Similarity=0.141  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      ..+..+..........+.+|.+.                           ++++.+..+.++..+++.+++.+++++.|+
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~---------------------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~   73 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVV---------------------------RDFNADVSLAPASVSLYLAGGMALQWLLGP   73 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            34444445555566677777777                           889999999999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ++||+|||+++..+.++..++.++..++++   ++.++++|+++|++.+...+....++.|++|+++|++.+++...+
T Consensus        74 l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~---~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (413)
T PRK15403         74 LSDRIGRRPVLITGALIFTLACAATLFTTS---MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSI  148 (413)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999888877   889999999999998876677778899999999999988876553

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.67  E-value=3.1e-16  Score=123.78  Aligned_cols=124  Identities=24%  Similarity=0.525  Sum_probs=114.1

Q ss_pred             HHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh
Q psy3312          34 FALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAER  113 (189)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr  113 (189)
                      ++..+.++..++...|.+.                           +++|++..+.+++.+++.++..++.++.|+++||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~   55 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQ---------------------------EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR   55 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHH---------------------------HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            3456777788888888887                           8899999999999999999999999999999999


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         114 YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       114 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +|||+++..+.++..++..+.+++++   ++.+++.|+++|++.+...+....++.|++|+++|++..++...+
T Consensus        56 ~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  126 (399)
T TIGR00893        56 FGARKTLAVFIVIWGVFTGLQAFAGA---YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA  126 (399)
T ss_pred             cCcceeeHHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999999999999998888887   889999999999999999999999999999999999999987754

>TIGR00895 2A0115 benzoate transport

Probab=99.67  E-value=1.5e-15  Score=120.34  Aligned_cols=135  Identities=27%  Similarity=0.447  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      ++.......+..+.........++..|.+.                           +++|++..+.+++.+...++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~   67 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAIS---------------------------AEWGLDPVQLGFLFSAGLIGMAF   67 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh---------------------------hccCCCHHHHHHHHHHHHHHHHH
Confidence            445555566666666666777788888887                           88999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA  182 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  182 (189)
                      +.++.|+++||+|||+++..+.++..++.++..+.++   ++.+++.|++.|++.+...+....++.|++|+++|+++.+
T Consensus        68 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~  144 (398)
T TIGR00895        68 GALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN---VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVG  144 (398)
T ss_pred             HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHh
Confidence            9999999999999999999999999998888888777   8889999999999999999999999999999999999998


Q ss_pred             HHhhc
Q psy3312         183 LVFAG  187 (189)
Q Consensus       183 ~~~~~  187 (189)
                      +...+
T Consensus       145 ~~~~~  149 (398)
T TIGR00895       145 LMFCG  149 (398)
T ss_pred             hHhhH
Confidence            87653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.67  E-value=1.1e-15  Score=122.04  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=92.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh---hc--hhhHHHHHHHHHHh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA---RS--FGAVGILCARFIVG  154 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~r~l~G  154 (189)
                      +++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++..++.   +.  .+++.+++.|+++|
T Consensus        44 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  123 (399)
T PRK05122         44 DQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLG  123 (399)
T ss_pred             HhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999988887766554432   11  12567899999999


Q ss_pred             hccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ++.+...+....++.|++|+++|+++.++...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  155 (399)
T PRK05122        124 IGESLAGTGSILWGIGRVGALHTGRVISWNGI  155 (399)
T ss_pred             hhHHhhcchHHHHHHhhcChhhhccchhhhhh
Confidence            99999999999999999999999999987654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.67  E-value=1.4e-15  Score=119.78  Aligned_cols=125  Identities=18%  Similarity=0.315  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHH-hhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITE-MAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGA  108 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (189)
                      .+++.+..+.......+..|. +.                           +++|+++.+.+++.+.+.++++++.++.|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g   58 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIK---------------------------DDLGLSTAQLGNLVAVPVLAGAVLRIILG   58 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHH---------------------------HHhCCCHHHhhHhhHHHHHHHHHHHHHHH
Confidence            455556667777778888885 76                           88999999999999999999999999999


Q ss_pred             hhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         109 LIAERYGGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       109 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      +++||+|||+++..+.++..++.++..+++ +   ++.+++.|+++|++.+ .++....++++++|+++|+++.++..
T Consensus        59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~  132 (366)
T TIGR00886        59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS---YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAA  132 (366)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence            999999999999999999999999988887 6   8899999999999855 45667889999999999999999876

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.66  E-value=2.3e-16  Score=124.22  Aligned_cols=125  Identities=20%  Similarity=0.346  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhh
Q psy3312          33 AFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAE  112 (189)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  112 (189)
                      .++..+.++..++...|.+.                           +++|++..+.+++.+...++..++.++.|+++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d   55 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLV---------------------------EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD   55 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHH---------------------------HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            45566778888888889888                           889999999999999999999999999999999


Q ss_pred             hhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         113 RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       113 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      |+|||+++..+.++..++.++..++++   ++.+++.|++.|++.+...+....++.|++|+++|+++.++...+
T Consensus        56 r~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  127 (379)
T TIGR00881        56 RSNPRVFLPIGLILCAIVNLFFGFSTS---LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCS  127 (379)
T ss_pred             hhCCeehhHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhcc
Confidence            999999999999999999999998887   889999999999999999999999999999999999988876554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.66  E-value=6.5e-16  Score=122.59  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=95.9

Q ss_pred             HHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCch
Q psy3312          39 VQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY  118 (189)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~  118 (189)
                      .....+++..|.+.                           +++|+++.+.+++.+.+.+++.+++++.|+++||+|||+
T Consensus         5 ~~~~~~~~~lp~i~---------------------------~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~   57 (368)
T TIGR00903         5 AIWVTFSPVLSLVA---------------------------EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW   57 (368)
T ss_pred             HHHHHHHhhHHHHH---------------------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence            34456778888888                           899999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         119 VLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ++..+......+.......++   ++.+++.|+++|++.+. .......++|++|+++|++++++...+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~  122 (368)
T TIGR00903        58 FLFGSLATFAAAAGRLLDPFN---YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFA  122 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            877665555444332222244   88999999999999985 455666679999999999999988765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.66  E-value=1.5e-15  Score=120.23  Aligned_cols=105  Identities=18%  Similarity=0.348  Sum_probs=98.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.++.+.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.++..+.++   ++.+++.|++.|++.+.
T Consensus        33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~  109 (385)
T TIGR00710        33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN---IETLLVLRFVQAFGASA  109 (385)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHcchhH
Confidence            889999999999999999999999999999999999999999999999999998888877   88899999999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....++.|++|+++|++..++.+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (385)
T TIGR00710       110 GSVISQALVRDIYPGEELSRIYSILMPV  137 (385)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            9999999999999999999999987653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.66  E-value=2.7e-15  Score=122.16  Aligned_cols=136  Identities=18%  Similarity=0.263  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312          22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV  101 (189)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (189)
                      ++|.++..+++.....+.....++...+.+.                           +++|++.++.+++.+.+.++..
T Consensus        16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~---------------------------~~~g~s~~~~~~~~s~~~~~~~   68 (455)
T TIGR00892        16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQ---------------------------QIFQATYSETAWISSIMLAVLY   68 (455)
T ss_pred             cchHHHHHHHHHHHHHHhhhcchhhhHHHHH---------------------------HHhCcchhHHHHHHHHHHHHHH
Confidence            4677777777777666667667888888888                           8999999999999999999999


Q ss_pred             HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312         102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILC-ARFIVGLGQGPAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      ++.++.|+++||+|||++++.+.++..++.++++++++   ++.+++ .|+++|++.+...+....++.++++ ++|+++
T Consensus        69 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a  144 (455)
T TIGR00892        69 AGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA  144 (455)
T ss_pred             HhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence            99999999999999999999999999998888888877   666654 5789999998777777888899995 799999


Q ss_pred             HHHHhhcC
Q psy3312         181 GALVFAGS  188 (189)
Q Consensus       181 ~~~~~~~~  188 (189)
                      .++.+++.
T Consensus       145 ~g~~~~~~  152 (455)
T TIGR00892       145 NGLAMAGS  152 (455)
T ss_pred             HHHHHhcc
Confidence            99988664

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.66  E-value=2.1e-15  Score=117.77  Aligned_cols=126  Identities=34%  Similarity=0.525  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHhhHHHHHH-HhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312          32 LAFALTYVQRFCLSMAIT-EMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI  110 (189)
Q Consensus        32 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  110 (189)
                      ++.+..........+..+ .+.                           +++|.+..+.+++.+.+.++..++.++.|++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l   55 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLA---------------------------EELGLSPSQIGLLFSAFFLGSALFSPFAGYL   55 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHH---------------------------CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------------------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666777777 777                           8899999999999999999999999999999


Q ss_pred             hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +||+|||+++..+.++.+++..+..++++   .+.+++.|++.|++.+...+....++.|++|+++|++..++...+
T Consensus        56 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  129 (352)
T PF07690_consen   56 SDRFGRRRVLIIGLLLFALGSLLLAFASN---FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAG  129 (352)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred             HHHcCCeeeEeehhhhhhhHHHHhhhhhh---HHHHhhhccccccccccccccccccccccchhhhhhhccccccch
Confidence            99999999999999999999665555555   678999999999999999999999999999999999999987754

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.65  E-value=1.4e-15  Score=121.16  Aligned_cols=127  Identities=18%  Similarity=0.207  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312          31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI  110 (189)
Q Consensus        31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  110 (189)
                      .+..+.............|.+.                           +++|++..+.+++.+.+.+++.+++++.|++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~---------------------------~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l   61 (382)
T PRK10091          9 ALGTFGLGMAEFGIMGVLTELA---------------------------HDVGISIPAAGHMISYYALGVVVGAPIIALF   61 (382)
T ss_pred             HHHHHHHHhhHHHHHhChHHHH---------------------------HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555556667778887                           8899999999999999999999999999999


Q ss_pred             hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +||+|||+++..+.++.+++.++.+++++   ++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus        62 ~dr~g~r~~~~~~~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (382)
T PRK10091         62 SSRYSLKHILLFLVALCVIGNAMFTLSSS---YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSG  135 (382)
T ss_pred             HccCccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHH
Confidence            99999999999999999999999998888   889999999999999988888889999999999999988876543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.65  E-value=2.4e-15  Score=119.68  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      .+++.+..........+..|.+.                           +++|.+..+.+++.+.+.++..+++++.|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~lp~~~---------------------------~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~   63 (381)
T PRK03633         11 LLCGLLLLTLAIAVLNTLVPLWL---------------------------AQEHLPTWQVGVVSSSYFTGNLVGTLLAGY   63 (381)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44555556666777788888888                           789999999999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ++||+|||+++..+.++.+++..+..++++   ++.+++.|+++|++.+...+.....+.+..++++|+++++++..+
T Consensus        64 l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (381)
T PRK03633         64 VIKRIGFNRSYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV  138 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999999999999999999988888877   889999999999999988888888888999999999999987653

>PRK10504 putative transporter; Provisional

Probab=99.65  E-value=3.8e-15  Score=121.52  Aligned_cols=128  Identities=16%  Similarity=0.222  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhh
Q psy3312          29 LGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGA  108 (189)
Q Consensus        29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (189)
                      +..++.+....+...+....|.+.                           +++|+++.+.+++.+.+.++.+++.++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~p~~~---------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g   66 (471)
T PRK10504         14 IVAFGFFMQSLDTTIVNTALPSMA---------------------------QSLGESPLHMHMVIVSYVLTVAVMLPASG   66 (471)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH---------------------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777777888889988                           88999999999999999999999999999


Q ss_pred             hhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         109 LIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       109 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      +++||+|||+++..+.++.+++.+++.++++   ++.+++.|+++|++.+...+....++.|++|+++|+++.++...
T Consensus        67 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (471)
T PRK10504         67 WLADRVGVRNIFFTAIVLFTLGSLFCALSGT---LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTL  141 (471)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            9999999999999999998888888887766   88899999999999999999999999999999999999888764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.64  E-value=5.1e-15  Score=121.91  Aligned_cols=144  Identities=24%  Similarity=0.308  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312          22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV  101 (189)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (189)
                      ..+.++.++.++.+....+...++...+.+..+..                      ..+.+.+..+.+++.+...++.+
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ig~~   70 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYY----------------------HGKGPLPSSVSAAVNGSASIGTL   70 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------cCcccchHHHHHHHHHHHHHHHH
Confidence            45556666788888888888888888887651000                      01234455677899999999999


Q ss_pred             HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312         102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF---GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG  178 (189)
Q Consensus       102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~  178 (189)
                      ++.++.|+++||+|||+++..++++..++.++..++++..   +++.++++|+++|++.|..++....+++|++|+++|+
T Consensus        71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg  150 (502)
T TIGR00887        71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG  150 (502)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence            9999999999999999999999999999988887765421   1568899999999999999999999999999999999


Q ss_pred             hHHHHHhhc
Q psy3312         179 RMGALVFAG  187 (189)
Q Consensus       179 ~~~~~~~~~  187 (189)
                      ++.++.+..
T Consensus       151 ~~~~~~~~~  159 (502)
T TIGR00887       151 AMMAAVFAM  159 (502)
T ss_pred             HHHHHHHHH
Confidence            999987653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK12382 putative transporter; Provisional

Probab=99.64  E-value=3e-15  Score=119.36  Aligned_cols=108  Identities=21%  Similarity=0.248  Sum_probs=91.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH---hh--chhhHHHHHHHHHHh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA---AR--SFGAVGILCARFIVG  154 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~r~l~G  154 (189)
                      +++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+...++.+.....   +.  ..+++.+++.|+++|
T Consensus        44 ~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  123 (392)
T PRK12382         44 HDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILG  123 (392)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999888776655432221   11  112788999999999


Q ss_pred             hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ++.+...+....++.|++|+++|++++++...+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~  156 (392)
T PRK12382        124 FGESQLLTGALTWGLGLVGPKHSGKVMSWNGMA  156 (392)
T ss_pred             HHHHHHHHHHHHHHHhhCCccccchhhhHHHHH
Confidence            999988888889999999999999999886553

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.63  E-value=6.7e-15  Score=117.95  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      .+...++..+..+........+.+..+.+.                           +++|+++.+.++..+.+.+++.+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~~~~~~~~~~~~~~   63 (406)
T PRK15402         11 ALLFPLCLVLFEFATYIANDMIQPGMLAVV---------------------------EDFNAGAEWVPTSMTAYLAGGMF   63 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhcchHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHH
Confidence            344444455555566666666667777777                           88999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA  182 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  182 (189)
                      +.++.|+++||+|||+++..+.+...++.++..++++   ++.+++.|+++|++.+...+....++.|++|+++|++..+
T Consensus        64 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~  140 (406)
T PRK15402         64 LQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS---IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITA  140 (406)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHH
Confidence            9999999999999999999999999999888888877   8889999999999998888888999999999999988877


Q ss_pred             HHhh
Q psy3312         183 LVFA  186 (189)
Q Consensus       183 ~~~~  186 (189)
                      +...
T Consensus       141 ~~~~  144 (406)
T PRK15402        141 LMAN  144 (406)
T ss_pred             HHHH
Confidence            7643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.61  E-value=7.7e-15  Score=115.03  Aligned_cols=108  Identities=18%  Similarity=0.116  Sum_probs=96.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF--GAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~  157 (189)
                      .+++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++..+..+.....  +++.+++.|+++|++.
T Consensus        27 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  106 (365)
T TIGR00900        27 LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQ  106 (365)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999998888888777776110  1889999999999999


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...+...+++.|++|+++|++..++.+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
T TIGR00900       107 AFFTPAYQAMLPDLVPEEQLTQANSLSQAV  136 (365)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhHHHHH
Confidence            999999999999999999999999987654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.61  E-value=1.1e-14  Score=116.42  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=92.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++++.+..+.+++.+.+.+++.+..++.|+++||+|||+++..+.++.+++.+++.+..+   .   ++.|+++|++.+.
T Consensus        31 ~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~---~---~~~r~l~G~~~a~  104 (393)
T PRK11195         31 KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH---P---LLAYGLVGIGAAA  104 (393)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHH
Confidence            678888889999999999999999999999999999999999999999888877666544   2   6789999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..|...+++.|++|+++|+++.++....
T Consensus       105 ~~pa~~a~i~~~~~~~~~~~a~~~~~~~  132 (393)
T PRK11195        105 YSPAKYGILTELLPGEKLVKANGWMEGS  132 (393)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999987643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.61  E-value=1.5e-14  Score=115.50  Aligned_cols=105  Identities=19%  Similarity=0.266  Sum_probs=95.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+.+++.+.+.++..++.++.|+++||+|||+++..+.+...++.++..+.++   ++.+++.|++.|++.+.
T Consensus        36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~  112 (394)
T PRK11652         36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGLGTGV  112 (394)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhhhH
Confidence            889999999999999999999999999999999999999999999999999888888777   88999999999999888


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....+..|++++++|+++.++...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (394)
T PRK11652        113 GGVMARTLPRDLYEGTQLRHANSLLNMG  140 (394)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8888888999999999999888776543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.60  E-value=1.2e-14  Score=114.08  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      +++.+.+..++....+.....++++.+.+.                           +++++|+.|.+++.++..+...+
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~---------------------------~~~~LS~~q~~ll~aiPil~Gal   64 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIK---------------------------SDFGLSEGQKGLLVAIPILVGAL   64 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------------cccCCCHHHHHHHHHHHHHHhHH
Confidence            344555577777788888888999999998                           89999999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA  182 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  182 (189)
                      ..++.|.+.||+|.|++..++.++..+..+...++.+..++|.+++.+++.|++ |..++..+..+++|+||+++|.++|
T Consensus        65 lRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlG  143 (417)
T COG2223          65 LRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALG  143 (417)
T ss_pred             HHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHH
Confidence            999999999999999999999999999999999998866678999999999997 4578889999999999999999999


Q ss_pred             HHhhc
Q psy3312         183 LVFAG  187 (189)
Q Consensus       183 ~~~~~  187 (189)
                      ++-.|
T Consensus       144 I~g~G  148 (417)
T COG2223         144 IAGAG  148 (417)
T ss_pred             Hhccc
Confidence            98744

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.60  E-value=1.9e-14  Score=115.84  Aligned_cols=130  Identities=21%  Similarity=0.195  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      ..+.++.........++..|.+.                           +++|++..+.+++.+.+.+++.+++++.|+
T Consensus         8 ~~~~f~~~G~~~~~~~~l~~~~~---------------------------~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~   60 (410)
T TIGR00885         8 ITSLFALWGFANDITNPMVPQFQ---------------------------QAFTLTAFQAALVQSAFYGGYFIMAIPAAI   60 (410)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455566778888887                           899999999999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      +.||+|||+++..+.++.+++.+++..+....+++.+++.|++.|+|.|...+..+.++.++.|+++|++..++.+.
T Consensus        61 l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (410)
T TIGR00885        61 FMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQS  137 (410)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHH
Confidence            99999999999999999999988765543222388899999999999999999999999999999999998887654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.60  E-value=9.9e-15  Score=118.25  Aligned_cols=137  Identities=19%  Similarity=0.301  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312          23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL  102 (189)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (189)
                      ++..+....+.+...+..+..+....|.+.                           + +|+++.+.+++.+.+.++..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---------------------------~-~g~s~~~~g~~~~~~~~~~~~   76 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV---------------------------E-QGFSKGELGFALSAISIAYGF   76 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHH---------------------------H-cCCCHhHhHHHHHHHHHHHHH
Confidence            455555566666677777777777777775                           4 589999999999999999999


Q ss_pred             hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312         103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG  181 (189)
Q Consensus       103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  181 (189)
                      +.++.|+++||+|||+++..+.++.+++.++....+.. .+++.+.+.|++.|++.+..++.....+.|++|+++|++++
T Consensus        77 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~  156 (438)
T TIGR00712        77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV  156 (438)
T ss_pred             hhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence            99999999999999999999999988888876665321 12667788999999999998898899999999999999999


Q ss_pred             HHHhhc
Q psy3312         182 ALVFAG  187 (189)
Q Consensus       182 ~~~~~~  187 (189)
                      ++.+.+
T Consensus       157 ~~~~~~  162 (438)
T TIGR00712       157 SIWNCA  162 (438)
T ss_pred             HHHHHH
Confidence            997654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.60  E-value=2e-14  Score=114.66  Aligned_cols=104  Identities=24%  Similarity=0.301  Sum_probs=96.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.+...++..+....++   .+.+++.|+++|++.+.
T Consensus        31 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~~~~~  107 (392)
T PRK10473         31 ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET---SSLFLAGRFLQGIGAGC  107 (392)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhhhH
Confidence            889999999999999999999999999999999999999999999999999988888777   77889999999999998


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..+....++.|++|+++|+++.++.+.
T Consensus       108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~  134 (392)
T PRK10473        108 CYVVAFAILRDTLDDRRRAKVLSLLNG  134 (392)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            889999999999999999999988764

>TIGR00898 2A0119 cation transport protein

Probab=99.60  E-value=6.8e-15  Score=121.00  Aligned_cols=107  Identities=26%  Similarity=0.421  Sum_probs=99.3

Q ss_pred             ccceeeecc---ccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy3312          77 NKHYEFDWD---ERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIV  153 (189)
Q Consensus        77 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  153 (189)
                      ...+|++++   ..+.+++.+++.++.+++.++.|+++||+|||+++.++.++..++.++.+++++   ++.+++.|++.
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~  190 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLV  190 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHH
Confidence            346788888   888999999999999999999999999999999999999999999999988888   88999999999


Q ss_pred             hhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      |++.+...+....++.|++|+++|+++.++...
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~  223 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV  223 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHH
Confidence            999999999999999999999999999887744

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.59  E-value=1.8e-14  Score=112.05  Aligned_cols=127  Identities=36%  Similarity=0.628  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312          31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI  110 (189)
Q Consensus        31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  110 (189)
                      .+..+.............+.+.                           ++++.+..+.+++.+...++..++.++.|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   57 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLA---------------------------EDLGLSASQAGLIVSAFSLGYALGSLLAGYL   57 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444555566666777777777                           7788999999999999999999999999999


Q ss_pred             hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +||+|||+.+..+.++..++.++..+.++   ++.+++.|++.|++.+...+....++.|++|+++|++..++.+.+
T Consensus        58 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (352)
T cd06174          58 SDRFGRRRVLLLGLLLFALGSLLLAFASS---LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG  131 (352)
T ss_pred             HHHhCCchhhHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHH
Confidence            99999999999999999999998888876   889999999999999999999999999999999999999987654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PTZ00207 hypothetical protein; Provisional

Probab=99.57  E-value=5.8e-14  Score=116.63  Aligned_cols=138  Identities=16%  Similarity=0.134  Sum_probs=108.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHH
Q psy3312          20 ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWG   99 (189)
Q Consensus        20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (189)
                      ...||..+......... ......++...+.+.                           +++|++..+.+++.++. ..
T Consensus        23 e~~Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~---------------------------~~lgls~~~l~~i~svg-~~   73 (591)
T PTZ00207         23 EPRRFALLVLGAFCSIC-TSFMYAFNLISGAMQ---------------------------ARYNLTQRDLSTITTVG-IA   73 (591)
T ss_pred             ccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------------------------HHhCcCHHHHHHHHHHH-HH
Confidence            34466555533333322 233445667777887                           89999999999988763 44


Q ss_pred             HHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccc
Q psy3312         100 YVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS---FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE  176 (189)
Q Consensus       100 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~  176 (189)
                      ..+.+++.|++.||+|+|+++.++.++.+++.++.+++.+.   .+++.+.+.|++.|++.+...+.....+.+||| ++
T Consensus        74 ~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~  152 (591)
T PTZ00207         74 VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN  152 (591)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence            56678889999999999999999999999999999887221   128899999999999999888889999999996 78


Q ss_pred             hhhHHHHHhhc
Q psy3312         177 RGRMGALVFAG  187 (189)
Q Consensus       177 r~~~~~~~~~~  187 (189)
                      ||++.|+...+
T Consensus       153 RG~a~Gi~~~~  163 (591)
T PTZ00207        153 RGAVVAIMKTF  163 (591)
T ss_pred             hHHHHHHHHHH
Confidence            99999987654

>PRK11043 putative transporter; Provisional

Probab=99.56  E-value=7.6e-14  Score=111.64  Aligned_cols=103  Identities=23%  Similarity=0.320  Sum_probs=93.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++..++.++..+.++   ++.+++.|+++|++.+.
T Consensus        34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~  110 (401)
T PRK11043         34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES---AAQLLVLRFVQAVGVCS  110 (401)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhhHH
Confidence            889999999999999999999999999999999999999999999999988888888777   88999999999999887


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ..+....++.|++|+++|++..+...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (401)
T PRK11043        111 AAVIWQALVIDRYPAQKANRVFATIM  136 (401)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            77888889999999988887776653

>PRK10054 putative transporter; Provisional

Probab=99.55  E-value=1.1e-13  Score=110.84  Aligned_cols=105  Identities=10%  Similarity=0.093  Sum_probs=94.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++..+.+++.+.+.++.++.+++.|+++||+|||+++..+.+...++.++..+.++   ++.+++.|.+.|.+.+.
T Consensus        36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~  112 (395)
T PRK10054         36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN---VTLVVLFFALINCAYSV  112 (395)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999888888888877   77778888888887777


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....+..|.+|+++|+++.++.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~  140 (395)
T PRK10054        113 FSTVLKAWFADNLSSTSKTKIFSLNYTM  140 (395)
T ss_pred             HHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            7788889999999999999998887653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.54  E-value=8.7e-15  Score=123.40  Aligned_cols=131  Identities=16%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      ..+..+........++...+.+.                           ++++++.++.|++.+.+.+++.++.++.++
T Consensus        38 ~~~~~~~~~~~~g~~~~~l~~ie---------------------------k~F~lss~~~G~i~s~~~i~~~~~~i~v~~   90 (633)
T TIGR00805        38 LTCAQLQGLLYNGLVNSSLTTIE---------------------------RRFKLSTSSSGLINGSYEIGNLLLIIFVSY   90 (633)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhh---------------------------hhhCCCCCcceeeeehhhHHHHHHHHHHHH
Confidence            34455555556666777777777                           899999999999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhh------------------------------------------------ch
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAAR------------------------------------------------SF  141 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------------------------------------------------~~  141 (189)
                      +.||+|||+.+.+++++.+++.+++++.+-                                                ..
T Consensus        91 ~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  170 (633)
T TIGR00805        91 FGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESL  170 (633)
T ss_pred             hhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCc
Confidence            999999999999999999999998877630                                                00


Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       142 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+..++++|+++|+|.+..++...+++.|++|+++|++.+++++.+
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~  216 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI  216 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence            1456789999999999999999999999999999999999998764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.54  E-value=3.7e-13  Score=107.59  Aligned_cols=125  Identities=22%  Similarity=0.177  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccc-----hhHHHHHHHHHHHHhhhh
Q psy3312          32 LAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERT-----QGLILSSFFWGYVLNHIP  106 (189)
Q Consensus        32 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  106 (189)
                      ++.+..........+..|.+.                           +++|++..+     .+++.+++.++..++.++
T Consensus        21 ~~~~~~~~~~~~~~~~l~~~~---------------------------~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~   73 (408)
T PRK09874         21 LGCFLTGAAFSLVMPFLPLYV---------------------------EQLGVTGHSALNMWSGLVFSITFLFSAIASPF   73 (408)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH---------------------------HHhCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555666777777                           677777554     478888999999999999


Q ss_pred             hhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         107 GALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       107 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .|+++||+|||+++..+.+..+++.++..+.++   ++.+++.|++.|++.+ ..+....++.+++|+++|+++.++...
T Consensus        74 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (408)
T PRK09874         74 WGGLADRKGRKIMLLRSALGMGIVMVLMGLAQN---IWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLST  149 (408)
T ss_pred             HHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence            999999999999999999999888888877777   8889999999999754 567778899999999999999888765


Q ss_pred             c
Q psy3312         187 G  187 (189)
Q Consensus       187 ~  187 (189)
                      +
T Consensus       150 ~  150 (408)
T PRK09874        150 G  150 (408)
T ss_pred             H
Confidence            3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.54  E-value=1.7e-13  Score=109.86  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=97.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+.+++.+...+...+..++.|+++||+|||+++..+.++..++.++..+.++   ++.+++.|+++|++.+.
T Consensus        39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~~~  115 (400)
T PRK11646         39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE---PWLLWLSCILSGLGGTL  115 (400)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999998888776   88899999999999888


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+...+++.+++|+++|+++.++.+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~  143 (400)
T PRK11646        116 FDPPRTALVIKLIRPHQRGRFFSLLMMQ  143 (400)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8888899999999999999999987653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.53  E-value=6.2e-14  Score=111.04  Aligned_cols=105  Identities=27%  Similarity=0.382  Sum_probs=98.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++..+..+.++   ++.+++.|+++|++.+.
T Consensus        19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~~~~~   95 (377)
T PRK11102         19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT---IDQLIYMRFLHGLAAAA   95 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999998888877   88899999999999998


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....++.|++|+++|+++.++.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (377)
T PRK11102         96 ASVVINALMRDMFPKEEFSRMMSFVTLV  123 (377)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8899999999999999999999987653

>TIGR00897 2A0118 polyol permease family

Probab=99.52  E-value=1.4e-13  Score=110.40  Aligned_cols=108  Identities=15%  Similarity=0.012  Sum_probs=91.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-ARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|+++.+.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.+++... ....+++.+++.|+++|++.+
T Consensus        41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~  120 (402)
T TIGR00897        41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP  120 (402)
T ss_pred             HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence            6789999999999999999999999999999999999999999999988887654321 111127778899999999988


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...+.....+.+++|+++|+++.|+.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  149 (402)
T TIGR00897       121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAV  149 (402)
T ss_pred             HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            77777788889999999999999987653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.51  E-value=2.4e-13  Score=111.66  Aligned_cols=106  Identities=13%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+..++.+.+.....+..+++|+++|| +||||++..+.+++.++.+++.++.+.  ...+.++|+++|+|.|
T Consensus        43 ~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~ig~g  120 (489)
T PRK10207         43 KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAVGNG  120 (489)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHhccc
Confidence            7899999999999999998888888999999999 999999999999999999988887652  2235588999999999


Q ss_pred             cchhHHHHHHHhhcCccc--hhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTE--RGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~  187 (189)
                      ...+...+++.|++|+++  |++++++++.+
T Consensus       121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~  151 (489)
T PRK10207        121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMS  151 (489)
T ss_pred             cccCCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence            999999999999998874  46666666543

>KOG0254|consensus

Probab=99.51  E-value=2.3e-13  Score=112.51  Aligned_cols=98  Identities=22%  Similarity=0.314  Sum_probs=92.9

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      .+.+++.+...++..+++++.|+++|++|||+.++++.+++.++.++.+++++   .++++++|++.|+|.|+.....+.
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~g~G~~~~~~pi  165 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGLGVGGASVLAPV  165 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhccchhhhhhcchh
Confidence            45689999999999999999999999999999999999999999999999998   889999999999999999999999


Q ss_pred             HHHhhcCccchhhHHHHHhhc
Q psy3312         167 ILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       167 ~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +++|..|++.||...+..++.
T Consensus       166 y~sEiap~~~RG~l~~~~~l~  186 (513)
T KOG0254|consen  166 YISEIAPAHIRGTLVSLYQLF  186 (513)
T ss_pred             hHhhcCChhhhHHHHHHHHHH
Confidence            999999999999998887653

>KOG2533|consensus

Probab=99.49  E-value=6.4e-13  Score=108.53  Aligned_cols=106  Identities=23%  Similarity=0.444  Sum_probs=99.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++.+....+++++.+++.++++++.++++.+.||++..+.+....+.+++..++.....+   ++.+++.|++.|+.+++
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl~es~  150 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGLFESG  150 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcc
Confidence            778888899999999999999999999999999999999999999888888877777777   89999999999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      .+|....++..|+.++||++.++++++.+
T Consensus       151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~  179 (495)
T KOG2533|consen  151 GWPGVVAILGNWYGKSERGLRMGIWYASA  179 (495)
T ss_pred             cchHHHHHHHhhcChhhhhhhHHHHHHhc
Confidence            99999999999999999999999998764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.48  E-value=3.7e-13  Score=110.27  Aligned_cols=103  Identities=14%  Similarity=0.170  Sum_probs=93.1

Q ss_pred             eeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312          82 FDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA  160 (189)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  160 (189)
                      +|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++   .+.+.+.|.+.|++.|..
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHhccccc
Confidence            89999999999999999999999999999999 89999999999999999998888766   677888999999999999


Q ss_pred             hhHHHHHHHhhcCccc---hhhHHHHHhhc
Q psy3312         161 YPSMNVILAQWVPKTE---RGRMGALVFAG  187 (189)
Q Consensus       161 ~~~~~~~~~~~~~~~~---r~~~~~~~~~~  187 (189)
                      .+...+++++++|+++   |+++.++++.+
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~  149 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRRDGGFTLFYMS  149 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccccceehhHHHH
Confidence            9999999999998765   77787776654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0255|consensus

Probab=99.46  E-value=1.9e-13  Score=113.06  Aligned_cols=101  Identities=23%  Similarity=0.194  Sum_probs=94.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.++.+.....+..+++.+|..+|.+++|.++||+|||+++++++++..++.++.+++++   ++.+++.|++.|++.++
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhccc
Confidence            344556677888899999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHH
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      .+.....+++|++++++|+.+..+
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH
Confidence            999999999999999999999887

>TIGR00896 CynX cyanate transporter

Probab=99.44  E-value=1.8e-13  Score=107.73  Aligned_cols=103  Identities=16%  Similarity=0.201  Sum_probs=91.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++.++.+++.+.+.+++.++.++.|+++||+|||+++..+.++..++.+.. ..++   .+.+++.|++.|++.+.
T Consensus        28 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~g~~~  103 (355)
T TIGR00896        28 SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG---TALLFAGTALIGVGIAI  103 (355)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc---HHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999998888777665 5555   77888999999999988


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....++.|++| ++|+++.++...+
T Consensus       104 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~  130 (355)
T TIGR00896       104 INVLLPSLIKRDFP-QRVGLMTGLYSMA  130 (355)
T ss_pred             HhccchHHHHHhCc-chhhHHHHHHHHH
Confidence            88888888999996 6899999887653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0252|consensus

Probab=99.41  E-value=5.8e-13  Score=105.66  Aligned_cols=143  Identities=17%  Similarity=0.276  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312          24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN  103 (189)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (189)
                      .....+...+.+....+..+++...+-+.....                 ...+  ..=+.++...+.+..+..+|.+++
T Consensus        40 fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~-----------------~~~~--~~g~~ps~i~~~Vn~~A~vGti~G  100 (538)
T KOG0252|consen   40 FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYY-----------------HGDE--SGGHYPSGVLALVNAAALVGTIFG  100 (538)
T ss_pred             HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhc-----------------CCCC--CCCcCCchHHHHHHHHHHHHHHHH
Confidence            445556778888888888887777666541100                 0000  112345667788889999999999


Q ss_pred             hhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312         104 HIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF----GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGR  179 (189)
Q Consensus       104 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~  179 (189)
                      |+++|++.||+|||+++...+++..++++++++....+    -.+++.+.|++.|+|.|+-+|...++.+|....+.||+
T Consensus       101 Ql~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa  180 (538)
T KOG0252|consen  101 QLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGA  180 (538)
T ss_pred             HHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccc
Confidence            99999999999999999999999999998777654433    24788899999999999999999999999999999998


Q ss_pred             HHHHHh
Q psy3312         180 MGALVF  185 (189)
Q Consensus       180 ~~~~~~  185 (189)
                      ..+...
T Consensus       181 ~iaavF  186 (538)
T KOG0252|consen  181 FIAAVF  186 (538)
T ss_pred             eeEEEE
Confidence            776544

>KOG2615|consensus

Probab=99.41  E-value=5.2e-13  Score=103.70  Aligned_cols=99  Identities=24%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhH
Q psy3312          84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPS  163 (189)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  163 (189)
                      .+..-.|.+-+.+.+.+.+.++.+|.++||+|||+++..+++..++...+.+.+.+   +..++..|++.|+.-| ....
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi~kg-nl~v  140 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGIFKG-NLSV  140 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhccC-chHH
Confidence            45556789999999999999999999999999999999999999999999999998   7666677999999876 4577


Q ss_pred             HHHHHHhhcCccchhhHHHHHhh
Q psy3312         164 MNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       164 ~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..++++|.+++++|+++++....
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~  163 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGT  163 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeeh
Confidence            89999999999999999887654

>KOG3764|consensus

Probab=99.40  E-value=1.6e-12  Score=101.56  Aligned_cols=105  Identities=24%  Similarity=0.240  Sum_probs=96.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      .+.+-..++.|++.+...+.+.+..++.|.+.||+|+|..+++|+++....++++++..+   +++++++|.+||+|.++
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGVGSAF  175 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhhhHHH
Confidence            345557789999999999999999999999999999999999999999999999999998   88999999999999999


Q ss_pred             chhHHHHHHHhhcCcc-chhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKT-ERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~-~r~~~~~~~~~~  187 (189)
                      ......+++++.+|.+ ||++++|+...+
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgf  204 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGF  204 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHH
Confidence            9999999999999975 589999987543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.40  E-value=2.6e-12  Score=101.59  Aligned_cols=125  Identities=22%  Similarity=0.286  Sum_probs=96.1

Q ss_pred             HHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeee--ccccchhHHHH-----HHHHHHHHhhhhhh
Q psy3312          36 LTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFD--WDERTQGLILS-----SFFWGYVLNHIPGA  108 (189)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~g  108 (189)
                      ..+.++..+++..+.+.                           +++.  .++.+.+.+.+     ...++..+++++.|
T Consensus         4 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G   56 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVF---------------------------HTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFG   56 (394)
T ss_pred             hhHHHHHHHHHHHHHHH---------------------------HHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence            45677777787777776                           3322  33444444433     23334457899999


Q ss_pred             hhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312         109 LIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-----AVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       109 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      +++||+|||+++..+.++..++.++.+++++...     .+.+++.|+++|++.+...+....++.|++|+++|++..++
T Consensus        57 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  136 (394)
T TIGR00883        57 HFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSF  136 (394)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHH
Confidence            9999999999999999999999998888876320     12578999999999999999999999999999999999887


Q ss_pred             Hhhc
Q psy3312         184 VFAG  187 (189)
Q Consensus       184 ~~~~  187 (189)
                      ...+
T Consensus       137 ~~~~  140 (394)
T TIGR00883       137 QQVG  140 (394)
T ss_pred             HHHH
Confidence            7654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.39  E-value=4.8e-13  Score=107.66  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=90.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~  157 (189)
                      ++++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++........  ...+++.+++.|+++|++.
T Consensus        45 ~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  124 (417)
T PRK10489         45 QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFG  124 (417)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            66777889999999999999999999999999999999999988877777665543211  1112778889999999998


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...+....++.+++|+++|+++.++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (417)
T PRK10489        125 SLGVTALLAATPALVGRENLMQAGAITMLT  154 (417)
T ss_pred             HHHHHHHhhhhhhccCHHHHHHHHHHHHHH
Confidence            888888899999999999999999887643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.39  E-value=4.6e-12  Score=113.41  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=86.1

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      ...+++.+++.+++.++++++|+++||+|||++++++.++..+..++..++....+++.+++.|+++|++.+...+...+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            44688889999999999999999999999999999988776666655544322222889999999999999999999999


Q ss_pred             HHHhhcCccchhhHHHHHhhc
Q psy3312         167 ILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       167 ~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +++|++|+++|++++++...+
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~  147 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAF  147 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHH
Confidence            999999999999999988664

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.36  E-value=1.3e-11  Score=101.75  Aligned_cols=105  Identities=14%  Similarity=0.129  Sum_probs=84.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+.+++.+.+........++.|+++|| +|||+++..+.++.+++..++.++.+.  .+.+.+.|+++|++.|
T Consensus        50 ~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gig~g  127 (500)
T PRK09584         50 KQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHD--AGIVYMGMATIAVGNG  127 (500)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhhh
Confidence            7899999888888877776666666789999999 599999999999999998888776431  4566788999999999


Q ss_pred             cchhHHHHHHHhhcCccc--hhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTE--RGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~  186 (189)
                      ...+....++.|++|+++  |..+.++++.
T Consensus       128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~  157 (500)
T PRK09584        128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYM  157 (500)
T ss_pred             cccCCHHHHHHHhcCCCchhhhhcchHHHH
Confidence            888988999999998654  3445665543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.34  E-value=9.4e-12  Score=97.88  Aligned_cols=107  Identities=8%  Similarity=-0.024  Sum_probs=88.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++++.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++.. ...++...++.|++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~  311 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFFTWGG  311 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch-hHHHHHHHHHHHHHhcc
Confidence            56777888888999999999999999999999999999999999888888877766655422 33345567778888888


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+..+.+++|.+|+++|++..|+.+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~  339 (377)
T TIGR00890       312 TISLFPSLVSDIFGPANSAANYGFLYTA  339 (377)
T ss_pred             chhccHHHHHHHhhhhhhhhHhHHHHHH
Confidence            8888888999999999999999988654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.33  E-value=2.4e-11  Score=95.98  Aligned_cols=98  Identities=15%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGF-GLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|.++.+.+++.+.+.+...+.+++.|+++||+||||.++. +.+...++.++.+++++   ++.+++.|+++|.+.+
T Consensus        26 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~  102 (375)
T TIGR00899        26 EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN---YFLLLVLGVLLSSFAS  102 (375)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHhhhh
Confidence            7899999999999999999999999999999999999887554 55555666677777776   7888889999988877


Q ss_pred             cchhHHHHHHHhhcCccchhhH
Q psy3312         159 PAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      ...+....+..|+.|+++|++.
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~  124 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAV  124 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhH
Confidence            7888888889999887777643

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2504|consensus

Probab=99.32  E-value=9.8e-12  Score=102.27  Aligned_cols=137  Identities=21%  Similarity=0.239  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      .+-|.+.+..+++..........++...+.+.                           ++++.+.++++|+.++.....
T Consensus        42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~---------------------------~~f~~s~~~~~~i~sl~~~~~   94 (509)
T KOG2504|consen   42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELM---------------------------DYFGSSSSQIAWIGSLLLGVY   94 (509)
T ss_pred             CeeeeeeHhHHHHHHhhhcchheehhhHHHHH---------------------------HHhCCCccHHHHHHHHHHHHH
Confidence            34677878788888888888888888888887                           899999999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGIL-CARFIVGLGQGPAYPSMNVILAQWVPKTERGR  179 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~  179 (189)
                      .+..|+.+.+.||+|.|++.+.|.++.+++.++.+++++   .|.++ ..-++.|+|.|..+.....++..+| +++|+.
T Consensus        95 ~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~l  170 (509)
T KOG2504|consen   95 LLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRAL  170 (509)
T ss_pred             HHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHH
Confidence            999999999999999999999999999999999999999   66654 4557789999999999999999999 589999


Q ss_pred             HHHHHhhcC
Q psy3312         180 MGALVFAGS  188 (189)
Q Consensus       180 ~~~~~~~~~  188 (189)
                      +.|+..+|+
T Consensus       171 A~Gia~~Gs  179 (509)
T KOG2504|consen  171 ATGIAVSGT  179 (509)
T ss_pred             HHhhhhccC
Confidence            999988774

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.29  E-value=2.1e-13  Score=110.66  Aligned_cols=103  Identities=25%  Similarity=0.396  Sum_probs=92.4

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM  164 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  164 (189)
                      +..+.+++.+...++..+|.++.|.++||+|||+.+.++.++..++.++..+++...+++.+.++|++.|++.|+..+..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34567888999999999999999999999999999999999999999999999822118899999999999999999999


Q ss_pred             HHHHHhhcCccchhhHHHHHhhc
Q psy3312         165 NVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       165 ~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..++.|..|+++|++..++...+
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~  146 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLF  146 (451)
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999999887776554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=99.29  E-value=8.5e-11  Score=92.59  Aligned_cols=109  Identities=14%  Similarity=0.077  Sum_probs=88.9

Q ss_pred             eeeeccccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hc-------hhhHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RS-------FGAVGILCAR  150 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~r  150 (189)
                      .++|++..+.+.+..+.. ++..++.+++|++.||+|+|+.+..+.++.++...+..+.. +.       .+.+.+....
T Consensus       237 ~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
T TIGR00901       237 LDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI  316 (356)
T ss_pred             HHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence            348889999888877655 67789999999999999999999888888877766555432 11       1156677788


Q ss_pred             HHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         151 FIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       151 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      ++.+++.+...+...+++.|.+|+++||+.+|+.++..
T Consensus       317 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       317 TLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            88999999999999999999999999999999987653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.29  E-value=1.2e-10  Score=95.74  Aligned_cols=104  Identities=14%  Similarity=0.131  Sum_probs=79.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHH-HHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA-TPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+..+......++..++.++.|+++||+|||+++..+.+...+.... ....... +...+++++++.|++.+
T Consensus       279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~  357 (490)
T PRK10642        279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN-VIGLIFAGLLMLAVILN  357 (490)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            567777777777777888999999999999999999999988877654433332 2222221 15567788888888777


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ...+....++.|.+|++.|++++++.
T Consensus       358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~  383 (490)
T PRK10642        358 CFTGVMASTLPAMFPTHIRYSALAAA  383 (490)
T ss_pred             HHHHHHHHHHHHHCCCccchHHHHHH
Confidence            77777888899999999999998874

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.29  E-value=6.8e-11  Score=101.06  Aligned_cols=95  Identities=13%  Similarity=0.136  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHH
Q psy3312          90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILA  169 (189)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  169 (189)
                      .+...+..++.+++.++.|+++||+|||+++.++.++.+++.++.++.++   ...+++.+++.|++.++.++....+++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456777899999999999999999999999999999999988888776   556777888888888888899999999


Q ss_pred             hhcCccchhhHHHHHhhc
Q psy3312         170 QWVPKTERGRMGALVFAG  187 (189)
Q Consensus       170 ~~~~~~~r~~~~~~~~~~  187 (189)
                      |++|+++|++++|+.+..
T Consensus       675 El~Pt~~Rgta~Gi~~~~  692 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNAL  692 (742)
T ss_pred             HHcCHHHHHHHHHHHHHH
Confidence            999999999999998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.28  E-value=5.1e-11  Score=95.41  Aligned_cols=105  Identities=18%  Similarity=0.120  Sum_probs=87.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++.|++..+.+.+.+...++.+++.++.|++.||+|||+.+..+.+...++..+..+.++   .+.+.+..++.|++.++
T Consensus       248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~  324 (406)
T PRK11551        248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS---FAGMLLAGFAAGLFVVG  324 (406)
T ss_pred             HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHh
Confidence            557888889999999999999999999999999999999988877666666555555554   55666777788888877


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....+..|.+|+++|++..|+.+..
T Consensus       325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~  352 (406)
T PRK11551        325 GQSVLYALAPLFYPTQVRGTGVGAAVAV  352 (406)
T ss_pred             HHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence            8888899999999999999999988654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.27  E-value=7.4e-11  Score=96.61  Aligned_cols=106  Identities=15%  Similarity=0.230  Sum_probs=83.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.......  ...+.+...+.++|.|
T Consensus        38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~--~~~~~l~l~li~iG~G  115 (493)
T PRK15462         38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVCGYG  115 (493)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhcc
Confidence            66899999999999999999999999999999999 99999999999998888766543221  1223334444455666


Q ss_pred             cchhHHHHHHHhhcCcc--chhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKT--ERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~  187 (189)
                      ...+...++++|.+|++  +|.++.++++.+
T Consensus       116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~  146 (493)
T PRK15462        116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAA  146 (493)
T ss_pred             cccccHHHHHHHHCCCCCccccceehHHHHH
Confidence            66677788999999876  688888888764

>TIGR00895 2A0115 benzoate transport

Probab=99.26  E-value=6.4e-11  Score=93.89  Aligned_cols=105  Identities=17%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++++.+..+.++..+...++.+++.++.|++.||+|||+.+....+......++.....+   .+..++..++.|++.+.
T Consensus       278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~  354 (398)
T TIGR00895       278 VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS---PTLLLLLGAIAGFFVNG  354 (398)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHH
Confidence            677888888999999999999999999999999999995555444433333333222333   55667788889999998


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....+++|.+|+++|+++.|+.+..
T Consensus       355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~  382 (398)
T TIGR00895       355 GQSGLYALMALFYPTAIRATGVGWAIGI  382 (398)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999987653

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.26  E-value=1e-10  Score=93.26  Aligned_cols=102  Identities=9%  Similarity=-0.050  Sum_probs=93.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.++.+.+++.+...++.++..++.+++.||+|+|+.+.++.+...+...+.++.++   .+.++..++++|+..+.
T Consensus       233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA---FPLIFLLQILHCGTFAV  309 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999999999999999999888888777   88888999999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ..+....++.+. |+++|+++.++++
T Consensus       310 ~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       310 CHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             HHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence            999999999998 9999999988875

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.24  E-value=2.7e-10  Score=94.77  Aligned_cols=101  Identities=13%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      .++|-+ ....|+.+...++..+..++.|+++|.||||.+++.+.++..++.++.+.+++   ...++.+..+.|+|.|.
T Consensus        72 ~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~---~~~~iag~~l~GvgaG~  147 (599)
T PF06609_consen   72 ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN---MNTFIAGMVLYGVGAGV  147 (599)
T ss_pred             HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc---HHHHHHHHHHHHHhhHH
Confidence            677654 56788889999999999999999999999999999999999999999999998   77999999999999776


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      .. .....++|..|.|.|+.+.++..
T Consensus       148 ~~-~~~~~isEl~p~k~R~~~~~~~~  172 (599)
T PF06609_consen  148 QE-LAALAISELVPNKWRGLGLAIAS  172 (599)
T ss_pred             HH-HHHHHHHHhcccchhhhHhHHHH
Confidence            65 45566899999999988776554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.23  E-value=1.4e-11  Score=83.47  Aligned_cols=91  Identities=29%  Similarity=0.433  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312          94 SSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVP  173 (189)
Q Consensus        94 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  173 (189)
                      +.+.++..++.++.|++.||+|||+.+..+.....++.++.....+   .+.+.+.+++.|++.+...+....++.|.+|
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            4566788899999999999999999999999888888887777666   7888899999999999889999999999999


Q ss_pred             ccchhhHHHHHhhc
Q psy3312         174 KTERGRMGALVFAG  187 (189)
Q Consensus       174 ~~~r~~~~~~~~~~  187 (189)
                      +++|++..++.+..
T Consensus        82 ~~~~~~~~~~~~~~   95 (141)
T TIGR00880        82 PEERGVALGLMSAG   95 (141)
T ss_pred             hhhhhHHHHHHHHh
Confidence            99999999987654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.23  E-value=2.8e-10  Score=88.51  Aligned_cols=105  Identities=29%  Similarity=0.460  Sum_probs=95.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCch-hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY-VLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +.+|.+..+.++..+...++..++.++.+++.||+|||+ .+..+.++..++.++....++   .+...+..++.|++.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~~~~  280 (352)
T cd06174         204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS---LALLLVALLLLGFGLG  280 (352)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHh
Confidence            345788889999999999999999999999999999999 999999999999888887776   7788899999999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...+....++.|..|+++|++..++.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (352)
T cd06174         281 FAFPALLTLASELAPPEARGTASGLFNTF  309 (352)
T ss_pred             ccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999987653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.22  E-value=1.5e-10  Score=103.83  Aligned_cols=98  Identities=17%  Similarity=0.117  Sum_probs=78.4

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH---HHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhH
Q psy3312          87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFG---LLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPS  163 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  163 (189)
                      ...++..+++.+.+++.++++|+++||+|||+++...   .+...+..+......+   ++.++++|+++|++.+...++
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi~~a~~~p~  128 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGIHSALFGPI  128 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhhchH
Confidence            3467778899999999999999999999999976432   2222222222222344   889999999999999999999


Q ss_pred             HHHHHHhhcCccchhhHHHHHhhc
Q psy3312         164 MNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       164 ~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+++.+++|+++|++++|+.+++
T Consensus       129 ~~a~l~~~~~~~~~~~a~~~~~~~  152 (1140)
T PRK06814        129 KYSILPDHLNKDELLGANALVEAG  152 (1140)
T ss_pred             HHHhhHhhcCccccchhhHHHHHH
Confidence            999999999999999999998765

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.21  E-value=3.1e-10  Score=92.84  Aligned_cols=107  Identities=12%  Similarity=0.068  Sum_probs=77.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++..+.++......++.+++.++.|+++||+|||+.+........+...+..+..... .+...+.+++.|+...+
T Consensus       287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~  365 (467)
T PRK09556        287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATS-EYMYLASLFALGFLVFG  365 (467)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhh
Confidence            67899999999999999999999999999999999999877665444433332222222111 55556777777865443


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..........|.+|+++||++.|+.+..
T Consensus       366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~  393 (467)
T PRK09556        366 PQLLIGVAAVGFVPKKAIGVANGIKGTF  393 (467)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence            3333346777999999999999998654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.20  E-value=2.5e-10  Score=94.00  Aligned_cols=128  Identities=15%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312          31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI  110 (189)
Q Consensus        31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  110 (189)
                      ++..+.........+...|...                           ++.|.+.++.+.. +.....+ ++.+++|++
T Consensus        18 ~~l~~~~gl~~~~~~~~l~~~l---------------------------~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl   68 (491)
T PRK11010         18 LILGFASGLPLALTSGTLQAWM---------------------------TVENIDLKTIGFF-SLVGQAY-VFKFLWSPL   68 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------------------HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHH
Confidence            3334444555556666777776                           6778888888886 3333333 689999999


Q ss_pred             hhhh-----CCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         111 AERY-----GGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       111 ~dr~-----g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      +||+     |||+. +..+.+..+++..+.++.....+++.+.+.+++.|++.+...+...++..|++|+++|+++.++.
T Consensus        69 ~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~  148 (491)
T PRK11010         69 MDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAIS  148 (491)
T ss_pred             HHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence            9999     99885 66777777777666666543223788888999999999988899999999999999999999887


Q ss_pred             hhc
Q psy3312         185 FAG  187 (189)
Q Consensus       185 ~~~  187 (189)
                      ..+
T Consensus       149 ~~g  151 (491)
T PRK11010        149 VLG  151 (491)
T ss_pred             HHH
Confidence            654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.1e-10  Score=90.05  Aligned_cols=124  Identities=23%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             HHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh
Q psy3312          35 ALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY  114 (189)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  114 (189)
                      +..........+++|.++                           +.++++..++++++..++.++.+.+++.|++.+|+
T Consensus        23 fl~G~~~~l~diLip~l~---------------------------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~   75 (422)
T COG0738          23 FLWGFITCLNDILIPHLK---------------------------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL   75 (422)
T ss_pred             HHHHHHhhcchhhHHHHH---------------------------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence            333445556778899998                           89999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         115 GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       115 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      |+|+.++.|+.++++++.++.-+.+..++..++++.++.|.|.+....+.+.++....++++..+.+.+..
T Consensus        76 gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q  146 (422)
T COG0738          76 GYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQ  146 (422)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHH
Confidence            99999999999999999988766655558899999999999999999999999999999866555555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.20  E-value=1.4e-10  Score=91.74  Aligned_cols=105  Identities=14%  Similarity=0.051  Sum_probs=79.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHH-HHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLAT-LATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      ++++.+..+.+.+.....++..++.++.|++.||+|||+.+.....+..+.. .+........+.+.+....++.|++.+
T Consensus       248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  327 (394)
T TIGR00883       248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG  327 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            5678888889998899999999999999999999999998775544443333 222211111125666677788888888


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ...+....++.|.+|+++|+++.++.
T Consensus       328 ~~~~~~~~~~~~~~p~~~~~~~~~~~  353 (394)
T TIGR00883       328 MYTGPMGSFLPELFPTEVRYTGASLA  353 (394)
T ss_pred             HHhhhHHHHHHHhCCccceeeEeeeh
Confidence            88899999999999999999887763

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.19  E-value=6.6e-10  Score=88.91  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=79.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++..+.+++.+...+..+++.++.|+++||+|||+.+..+.+...+........++   .+.+++.+++.+++.+.
T Consensus       245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS---PAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence            668888888998888777778889999999999999999888776655554444334444   66677788888877777


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..+....+..|.+|+ +|+++.++.+.
T Consensus       322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~  347 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QAGSATTLYTN  347 (393)
T ss_pred             HHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence            667777888999974 68988887654

>KOG0569|consensus

Probab=99.19  E-value=1.3e-10  Score=94.31  Aligned_cols=98  Identities=31%  Similarity=0.446  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL  168 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  168 (189)
                      -+.+.+++.+|.++|+++.++++||+|||..+.++.++..++.++..++....++..++++|++.|+..|......+.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35567889999999999999999999999999999999999888888777665589999999999999999999999999


Q ss_pred             HhhcCccchhhHHHHHhh
Q psy3312         169 AQWVPKTERGRMGALVFA  186 (189)
Q Consensus       169 ~~~~~~~~r~~~~~~~~~  186 (189)
                      .|..|.+.||..-.+...
T Consensus       142 ~E~sP~~~RG~~g~~~~~  159 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQI  159 (485)
T ss_pred             hhcChhhhccHHHHHHHH
Confidence            999999999987666543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.18  E-value=3.6e-10  Score=90.63  Aligned_cols=128  Identities=13%  Similarity=-0.000  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312          31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI  110 (189)
Q Consensus        31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  110 (189)
                      +..++.............|.+.                           ++.|++.++.|++......  .+..+++|++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l---------------------------~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~   55 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWM---------------------------TVEGLDIQTIGFFSLVGQA--YIFKFLWAPL   55 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            3445555566666777788877                           7889999999999666664  6899999999


Q ss_pred             hhhh-----CCch-hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         111 AERY-----GGKY-VLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       111 ~dr~-----g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      +||+     |||| .+..+.+..+++..+..+.+...+++.+.+..++.++..+...+...+++.|++|+++|+++.++.
T Consensus        56 ~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~  135 (402)
T PRK11902         56 MDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVK  135 (402)
T ss_pred             HHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHH
Confidence            9999     8875 688878888777777666643222677777777788888888899999999999999999998887


Q ss_pred             hhc
Q psy3312         185 FAG  187 (189)
Q Consensus       185 ~~~  187 (189)
                      ..+
T Consensus       136 ~~g  138 (402)
T PRK11902        136 VLG  138 (402)
T ss_pred             HHH
Confidence            654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.18  E-value=1.5e-10  Score=91.14  Aligned_cols=106  Identities=11%  Similarity=0.058  Sum_probs=83.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-----CCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-----GGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIV  153 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  153 (189)
                      +++|++.++.++.... .+...+ .+++|++.||+     ||||. ++.+.++.++......+..+..+.+.+....++.
T Consensus        16 ~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~   93 (356)
T TIGR00901        16 RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI   93 (356)
T ss_pred             HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence            8899999999998655 445555 99999999998     89886 4666777766666666664333366777777888


Q ss_pred             hhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +++.+...+...+++.|++|+++|+++.++...+
T Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~  127 (356)
T TIGR00901        94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVG  127 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHH
Confidence            8888888899999999999999999999886654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.17  E-value=6e-10  Score=88.69  Aligned_cols=105  Identities=11%  Similarity=0.104  Sum_probs=82.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHH-HHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA-TPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+.+++.+...++.+++.++.|++.||+|||+.+.++.+...+.... .....+   .+.+.+..++.|+..+
T Consensus       267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGAN---VAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHc
Confidence            568889999999999999999999999999999999999988887765333322 222222   5555666677777767


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...+....++.|.+|+++|+++.|+.+..
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  372 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQL  372 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHH
Confidence            77788888999999999999999987653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.15  E-value=6.1e-10  Score=87.27  Aligned_cols=106  Identities=22%  Similarity=0.261  Sum_probs=91.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|.+..+.+++.....++..++.++.+++.||++||+.+..+.++.++...+..+.++ . .+.+.+..++.|++.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~  317 (365)
T TIGR00900       240 KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-N-FPLFLVLWFAIGVGYGP  317 (365)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-h-HHHHHHHHHHHHHHHHH
Confidence            347888889999999999999999999999999999999998887777777766666553 1 66778888999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....++.|.+|+++|++..++.+..
T Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (365)
T TIGR00900       318 INVPQGTLLQRRVPAELLGRVFGAQFSL  345 (365)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            8999999999999999999999988654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.15  E-value=1e-09  Score=86.75  Aligned_cols=104  Identities=11%  Similarity=0.100  Sum_probs=82.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.++.+.+++.........++.++.|++.||+|||+++..+.+...+........++   .+.+.+.+++.|++.+.
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS---LWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            567888888888887777777888999999999999999988877766555544444444   66777788899998888


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+....++.|..|+ +|+++.++++..
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~  331 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNT  331 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHH
Confidence            888888899999875 567888887643

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.14  E-value=2.1e-09  Score=85.84  Aligned_cols=96  Identities=28%  Similarity=0.321  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL  168 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  168 (189)
                      .++....+.++.++++++.|++.||+|+|+.+..+..+..++.++..+.++   .+.+++..++.|++.+...+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~  327 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT---AWVALAGAALTGAGCSLIFPALGVEV  327 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            455666777888899999999999999999999988888887777666655   66777888999999988888888899


Q ss_pred             HhhcCccchhhHHHHHhhc
Q psy3312         169 AQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       169 ~~~~~~~~r~~~~~~~~~~  187 (189)
                      .|.+|+++|++..|+++..
T Consensus       328 ~~~~~~~~~g~~~g~~~~~  346 (392)
T PRK12382        328 VKRVPSQVRGTALGGYAAF  346 (392)
T ss_pred             HHhcCHHHHHHHHHHHHHH
Confidence            9999999999999998754

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.13  E-value=3.2e-09  Score=84.92  Aligned_cols=97  Identities=25%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHH
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVI  167 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~  167 (189)
                      +.++..+.+.++.+++.++.|++.||+|+|+.+..+.++..++..+....++   .+.+++.+++.|++.+..++.....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~~~~~~~~~~~  326 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS---PWMALIGAALTGFGFSLVFPALGVE  326 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4466667788888999999999999999999999888888877777766655   6677788899999998888888888


Q ss_pred             HHhhcCccchhhHHHHHhhc
Q psy3312         168 LAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       168 ~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +.|.+|+++|+++.++++..
T Consensus       327 ~~~~~~~~~~g~~~g~~~~~  346 (399)
T PRK05122        327 AVKRVPPQNRGAALGAYSVF  346 (399)
T ss_pred             HHHhCCHHHHHHHHHHHHHH
Confidence            89999999999999987653

>PRK09952 shikimate transporter; Provisional

Probab=99.11  E-value=2.1e-09  Score=87.31  Aligned_cols=106  Identities=12%  Similarity=-0.014  Sum_probs=75.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|.+......+.....+...++.++.|+++||+|||+++..+.++..+......... .....+.+++..++.+++.+
T Consensus       279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  358 (438)
T PRK09952        279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD  358 (438)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            56777766555555556667788889999999999999998888776655443332221 11113344455566678877


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ...+....+++|.+|++.|+++.++.+
T Consensus       359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~  385 (438)
T PRK09952        359 MVVCVQQPMFTEMFGASYRYSGAGVGY  385 (438)
T ss_pred             HHHHHHHHHHHHHCCcchhHHHHhHHH
Confidence            778888999999999999988887753

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=2.3e-09  Score=86.91  Aligned_cols=107  Identities=10%  Similarity=0.002  Sum_probs=70.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL-AARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..+....... .....+....+..-.+.++..+
T Consensus       272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (432)
T PRK10406        272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS  351 (432)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            567888888888888888888889999999999999999887766544333322211 1111112222222222223333


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ...+....+.+|++|++.|+++.|+.+.
T Consensus       352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~  379 (432)
T PRK10406        352 FYTSISGILKAEMFPAQVRALGVGLSYA  379 (432)
T ss_pred             HHHHHHHHHHHHHCCCCccchhhhHHHH
Confidence            3345567788999999999999999764

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.11  E-value=8.4e-10  Score=90.65  Aligned_cols=107  Identities=11%  Similarity=0.093  Sum_probs=80.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++..+.+++.+...++.+++.++.|+++||+|||+++..+.++..+..++........ .+.+.+..++.+....+
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  382 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGAN-VWVLGLLLFFQQMLGQG  382 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHHHhcc
Confidence            57889999999999999999999999999999999999998888776665554433332221 33444444544443334


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+..+.++.|.+|+++|++.+++.+..
T Consensus       383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~  410 (496)
T PRK03893        383 ISGLLPKLIGGYFDTEQRAAGLGFTYNV  410 (496)
T ss_pred             cchhhHHHHHhhCCHHHhhcccchhhhh
Confidence            4567778999999999999999887654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.10  E-value=1.1e-09  Score=89.45  Aligned_cols=107  Identities=14%  Similarity=0.192  Sum_probs=88.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--ARSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~  157 (189)
                      +.+|.++.+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+.  ++.. .+.+....++.|++.
T Consensus       284 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~  362 (485)
T TIGR00711       284 QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTP-FLAIALPQFIRGFGM  362 (485)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999988888877766522  2222 566667788899999


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +..++.......+..|+++|+++.++.+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  392 (485)
T TIGR00711       363 GCFFMPLTTIALSGLPPHKIARGSSLSNFT  392 (485)
T ss_pred             HHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence            888877788888889999999999987653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.10  E-value=2.1e-09  Score=84.84  Aligned_cols=107  Identities=16%  Similarity=0.012  Sum_probs=70.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchh-HHHHHHHHHHH---HHHHHHHhh-chhhHHHHHHHHHHh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYV-LGFGLLVSTLA---TLATPLAAR-SFGAVGILCARFIVG  154 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~r~l~G  154 (189)
                      ++++.+..+.+++.+...++..++.++.|++.||++||+. +........+.   ..+...... ....+..+....+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (399)
T TIGR00893       244 QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF  323 (399)
T ss_pred             HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            5678888889999999999999999999999999999961 11111111111   111111111 111334344444444


Q ss_pred             hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+.+ ..+....+++|.+|+++|++..++.+..
T Consensus       324 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (399)
T TIGR00893       324 FGLG-AGAIGWALISDNAPGNIAGLTGGLINSL  355 (399)
T ss_pred             hchh-hhhHHHHHHHhhcChhHHHHHHHHHHHH
Confidence            4444 7888999999999999999999988654

>PRK03699 putative transporter; Provisional

Probab=99.09  E-value=4.1e-09  Score=84.37  Aligned_cols=103  Identities=12%  Similarity=0.139  Sum_probs=80.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++..+.+++.+.+.++..++.++.|++.||++||+.+.....+..+...+....++   .+.+.+..++.|++.+.
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~  310 (394)
T PRK03699        234 KKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD---PSHLLYAILGLGFFSSA  310 (394)
T ss_pred             HHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHH
Confidence            668999999999999999999999999999999999999988877776666555555444   55556677888888887


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .++....+..+..| +++++..+....
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~  336 (394)
T PRK03699        311 IYTTIITLGSQQTK-VASPKLVNFILT  336 (394)
T ss_pred             HHHHHHHHHHHHcc-CCCHHHHHHHHH
Confidence            88887878888775 445666665543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.09  E-value=4.1e-09  Score=84.35  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             eeeeccccchhHHHHHHHH-HHHHhhhhhhhhhhhhCCchhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFW-GYVLNHIPGALIAERYGGKYVL-GFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  157 (189)
                      +++|+++++.+++.+...+ +..++.++.++ .||+||||.+ ..+.+..++...+.+++++   ++.+++.+.+.|...
T Consensus        44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~  119 (393)
T PRK15011         44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRN---YFVLLFVGVFLSSFG  119 (393)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Confidence            7899999999999776554 66666666666 9999999875 4555665666666777766   666655554444444


Q ss_pred             ccchhHHHHHHHhhcCccchh
Q psy3312         158 GPAYPSMNVILAQWVPKTERG  178 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~  178 (189)
                      +...+....+..++.++++|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~  140 (393)
T PRK15011        120 STANPQMFALAREHADKTGRE  140 (393)
T ss_pred             HhhHHHHHHHHHHHhhhccch
Confidence            566788888888888776553

>TIGR00896 CynX cyanate transporter

Probab=99.09  E-value=5e-09  Score=82.57  Aligned_cols=103  Identities=14%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      ++.|.+..+.+.+.+...++.+++.++.|++.||+ +||+.+.++.++.+++..+..+.++.   ... ...++.|++.+
T Consensus       225 ~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~l~g~~~g  300 (355)
T TIGR00896       225 ISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH---GLW-AWALVLGLGQG  300 (355)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh---HHH-HHHHHHHHhhh
Confidence            45788888999999999999999999999999999 56667777777777776666655442   122 23467899999


Q ss_pred             cchhHHHHHHHhhcC-ccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVP-KTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~r~~~~~~~~~  186 (189)
                      ..++.....+.+..+ +++++...++.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  329 (355)
T TIGR00896       301 GAFPLALTLIGLRSRQAAQAAALSAMAQS  329 (355)
T ss_pred             hHhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            888887777766554 4667887777553

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.08  E-value=3.3e-09  Score=86.01  Aligned_cols=106  Identities=15%  Similarity=0.091  Sum_probs=74.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHH-HHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL-ATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +.+|++..+.++......++..++.++.|+++||+|||+++..+.++..+... .........+.....+..++.|++.+
T Consensus       267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  346 (434)
T PRK15075        267 TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG  346 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            45788888888888888899999999999999999999988776544333221 11111111113334444555566666


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ...+....++.|.+|++.|+++.++.+
T Consensus       347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~  373 (434)
T PRK15075        347 SYNGAMVVALTEVMPAEVRTAGFSLAY  373 (434)
T ss_pred             HHHhhHHHHHHHHCCCCccchheeHHH
Confidence            666667788999999999999988753

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.08  E-value=1.9e-09  Score=85.89  Aligned_cols=102  Identities=13%  Similarity=0.001  Sum_probs=87.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++.|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..++..++....++   .+.+++..++.|++.+.
T Consensus       233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA---LPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Confidence            457888888999999888899999999999999999999999999888887777777666   77888899999999988


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ..+....++.+. +++++++..++.+
T Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~  334 (382)
T PRK11128        310 CHLAAMRYIAAR-PGSEVIRLQALYS  334 (382)
T ss_pred             HHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence            888888888887 5677788888765

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.08  E-value=3.6e-09  Score=85.24  Aligned_cols=107  Identities=20%  Similarity=0.149  Sum_probs=75.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+...+....+... ...+.+..+..+++..+
T Consensus       259 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  337 (426)
T PRK12307        259 AGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN-YLLLGACLFGLMATNVG  337 (426)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHhccc
Confidence            44677888888888889999999999999999999999999888877666554444333211 22222222222333333


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+..+.++.|.+|++.|++++|+.+..
T Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~  365 (426)
T PRK12307        338 VGGLVPKFLYDYFPLEVRGLGTGLIYNL  365 (426)
T ss_pred             HhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence            4456677889999999999999987643

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.07  E-value=1.7e-09  Score=89.45  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=89.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~  157 (189)
                      .+..-++...+++.....+...+..+++|.++||++||++++.+-++.++..++.++..  +.-+.|.+++.-++.|++.
T Consensus        38 ~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~  117 (524)
T PF05977_consen   38 TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS  117 (524)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence            34455778899999999999999999999999999999999999887766655444332  2223788889999999999


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...|+..+++.|..|+++...+.++....
T Consensus       118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~  147 (524)
T PF05977_consen  118 AFFNPAWQAIIPELVPKEDLPAANALNSIS  147 (524)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence            999999999999999999999888876543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=1.7e-09  Score=84.47  Aligned_cols=108  Identities=22%  Similarity=0.338  Sum_probs=89.6

Q ss_pred             eeeecc-ccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWD-ERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++ ..+.+++.+...+...++.++.|++.||+++|+.+........+..+...+.....+....++..++.|++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  314 (352)
T PF07690_consen  235 EVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFG  314 (352)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            778888 7888988999999999999999999999999888777777777666655554442225566677888999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...+....++.+.+|+++|+++.|+.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  343 (352)
T PF07690_consen  315 IVFPILFSLIQELVPPEYRGTAFGLFNSI  343 (352)
T ss_dssp             HHCHHHHHHHHCCCHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999998753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.07  E-value=2.8e-09  Score=86.16  Aligned_cols=101  Identities=16%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHhhccccchhH
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR-SFGAVGILCARFIVGLGQGPAYPS  163 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~  163 (189)
                      ..++.+...+...+..+++.++.|++.||+|+|+++..+.++..+...+...... ....+.+++.+++.|++.+...+.
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3466788889999999999999999999999999999999988887766655321 111456677899999999888888


Q ss_pred             HHHHHHhhcCccchhhHHHHHh
Q psy3312         164 MNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       164 ~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ...+++|++|+++|+++.|+.+
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~  350 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFT  350 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHH
Confidence            8999999999999999999986

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.07  E-value=2.2e-09  Score=88.50  Aligned_cols=107  Identities=12%  Similarity=0.130  Sum_probs=89.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ..+|.++.+.++......++..++.++.|++.||+|+|+.+..+.++.+++..+........+.+......++.|++.|.
T Consensus       288 ~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~  367 (495)
T PRK14995        288 FVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAAS  367 (495)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHH
Confidence            56789999999999999999999999999999999999999988888877776555433222255566778899999998


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..+.....+.+..|+++++.+.++.+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~  394 (495)
T PRK14995        368 ALLASTSAIMAAAPPEKAAAAGAIETM  394 (495)
T ss_pred             HHHHHHHHHHhcCCHHhcchHHHHHHH
Confidence            888888889999999999999988764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.06  E-value=5.4e-09  Score=83.74  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=79.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      .++|.+..+.+...+.+.++.+++.++.|++.||+|||+.+..+..+..++..+....+..  ....  ..++.|++.+.
T Consensus       233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~--~~~l~g~g~g~  308 (393)
T PRK09705        233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ--LPVL--WAMVCGLGLGG  308 (393)
T ss_pred             HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch--HHHH--HHHHHHHhccc
Confidence            4578898999999999999999999999999999999999888877777766554433321  1122  23456888888


Q ss_pred             chhHHHHHHHhhcC-ccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVP-KTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~r~~~~~~~~~~  187 (189)
                      .++.......+..+ +++|++..++.+..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  337 (393)
T PRK09705        309 AFPLCLLLALDHSVQPAIAGKLVAFMQGI  337 (393)
T ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            88877777777775 57889998876543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.03  E-value=4.3e-09  Score=84.79  Aligned_cols=105  Identities=16%  Similarity=0.093  Sum_probs=88.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++   .+...++.++.|++.+.
T Consensus       252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~  328 (417)
T PRK10489        252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM---WILAVLCLALFGYLSAI  328 (417)
T ss_pred             hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHHHH
Confidence            448888889999999999999999999999999988888888888777777766666655   56667788888988877


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+...+++.|.+|++.|++..|+++..
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~  356 (417)
T PRK10489        329 SSLLQYTLLQTQTPDEMLGRINGLWTAQ  356 (417)
T ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence            7777788999999999999999987653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.03  E-value=3.8e-09  Score=83.23  Aligned_cols=108  Identities=19%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-GAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g  158 (189)
                      +.+|+++.+.+++.+...+..+++.++.|++.||+|+|+.+..+......+..+..+..... +.+...+...+.+++.|
T Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (366)
T TIGR00886       254 DQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG  333 (366)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence            56788888999888899999999999999999999999888777766666555544332210 14444444444455555


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      ...+....++++.+| ++||+..|+.+...
T Consensus       334 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~  362 (366)
T TIGR00886       334 AGNGSTFALVPHIFR-RATGAVSGLVGAIG  362 (366)
T ss_pred             cccchhhhcchhhch-hhcccHHHHHHHhc
Confidence            555566677788886 69999999877643

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.02  E-value=3.2e-09  Score=84.63  Aligned_cols=123  Identities=13%  Similarity=-0.003  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhh
Q psy3312          32 LAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIA  111 (189)
Q Consensus        32 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  111 (189)
                      +.++..+.......+..|.+.                           +++|++..+.+++.+.+.+...++++++|+++
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l---------------------------~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~   63 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWL---------------------------KGIGLGEEMIGLLIGAALIARFAGGLFFAPLI   63 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444454555666677777                           78999999999999999999999999999999


Q ss_pred             hhhCCchhHHHHHH-HHHHHHH-HHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         112 ERYGGKYVLGFGLL-VSTLATL-ATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       112 dr~g~r~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ||+||++....... ...+..+ ....+++   ++.+++.|.++|.+.+...+...++..++  +++|++..|....
T Consensus        64 d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~  135 (382)
T TIGR00902        64 KDANHIIIALRLLALASAIFAAAFSAGAHN---AWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRL  135 (382)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHH
Confidence            99998543322211 1111112 2234455   88899999999999888888888887665  4677777766543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10504 putative transporter; Provisional

Probab=99.02  E-value=4.1e-09  Score=86.15  Aligned_cols=108  Identities=18%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ..+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.++...+..+.......+.+.+..++.|++.+.
T Consensus       290 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  369 (471)
T PRK10504        290 IGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNST  369 (471)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence            35788888899988888888888999999999999999999988887877766655543222134445566778888888


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .++....+..+.+|+++|+.+.++.+..
T Consensus       370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~  397 (471)
T PRK10504        370 RFSSMNTLTLKDLPDNLASSGNSLLSMI  397 (471)
T ss_pred             HHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence            8888999999999999999999887653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.02  E-value=7e-09  Score=83.00  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH---HHhh--chhhHHHHHHHHHHh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP---LAAR--SFGAVGILCARFIVG  154 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~r~l~G  154 (189)
                      +++|+++.+.+++.+.+.++..+++++.|+++||+|||+.+..+++..++......   +.+.  ....+..++.+++.|
T Consensus        31 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  110 (396)
T TIGR00882        31 DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG  110 (396)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999887666654443221   1111  011334567788899


Q ss_pred             hccccchhHHHHHHHhhc
Q psy3312         155 LGQGPAYPSMNVILAQWV  172 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~  172 (189)
                      ++.+...+....+..+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~  128 (396)
T TIGR00882       111 FVFSAGAGAIEAYIEKVS  128 (396)
T ss_pred             HHhccchhhHHHHHHHhh
Confidence            988888888877777754

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.01  E-value=1.4e-08  Score=83.27  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc--hhHHHHHHHHHHHHHHHHH--------HhhchhhHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK--YVLGFGLLVSTLATLATPL--------AARSFGAVGILCA  149 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  149 (189)
                      +++|++..+...+..+..+..+++++++|++.||+|.|  +++..+++++.+..+...+        ..+   .+.+.+.
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~  386 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVL  386 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHH
Confidence            78999999999999999999999999999999999999  8888888877555544333        233   6778888


Q ss_pred             HHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       150 r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      -++.|+..|..++...++.+++.|+++.+..+|++..
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i  423 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI  423 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            8999999999999999999999999999999999865

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.00  E-value=7e-09  Score=82.82  Aligned_cols=103  Identities=16%  Similarity=0.040  Sum_probs=76.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.+..+.+++.+...++.+++.++.|++.||++||+++....+.......+....++   .+.+.+..++.|++.+.
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~g~~~~~  310 (390)
T PRK03545        234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANS---EWHLSVLSIFWGIAIMC  310 (390)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHhc
Confidence            567888888999999999999999999999999999887554433333322222233333   66777788888998877


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..+.....+.+..| ++|++++|+++.
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~  336 (390)
T PRK03545        311 IGLAMQVKVLKLAP-DATDVAMALFSG  336 (390)
T ss_pred             chHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence            77777778888875 688998887654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.00  E-value=1.3e-08  Score=81.06  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=77.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++.|.+..+.+++.+...++.++++++.|++.||+|+|+++..+.....++.....  ..    .......++.|++...
T Consensus       228 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~----~~~~~~~~l~g~~~~~  301 (381)
T PRK03633        228 NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ----AAMAPALFILGAAGFT  301 (381)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh----HHHHHHHHHHHHHHHh
Confidence            45688888889988999999999999999999999999999888777776655432  21    2234456777877777


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHH
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ..|.....+.|..|+++++...+..
T Consensus       302 ~~p~~~~~~~~~~~~~~~~~~~~~~  326 (381)
T PRK03633        302 LYPVAMAWACEKVEHHELVAMNQAL  326 (381)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHH
Confidence            7899999999999888877666554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.00  E-value=6.3e-09  Score=85.05  Aligned_cols=105  Identities=12%  Similarity=0.062  Sum_probs=78.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh----hhCCchhHHHH-HHHHHHHHHHHHHHhhch-------------
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE----RYGGKYVLGFG-LLVSTLATLATPLAARSF-------------  141 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~l~~~-~~~~~~~~~~~~~~~~~~-------------  141 (189)
                      +++|.++...+++..+..+...+.+++.|+++|    |+||||.++.+ .+...++..+++++.+..             
T Consensus        32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~  111 (477)
T TIGR01301        32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP  111 (477)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence            678999999999999999999999999999999    59999987764 556656656666654410             


Q ss_pred             -hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch--hhHHHHH
Q psy3312         142 -GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER--GRMGALV  184 (189)
Q Consensus       142 -~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~  184 (189)
                       ..+..+++..+..++.....+...++++|.+|+++|  +.+.++.
T Consensus       112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~  157 (477)
T TIGR01301       112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF  157 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence             012334444445557777788889999999998865  4566654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.99  E-value=2.9e-09  Score=85.85  Aligned_cols=99  Identities=10%  Similarity=0.028  Sum_probs=84.2

Q ss_pred             eeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccch
Q psy3312          82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAY  161 (189)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~  161 (189)
                      .+.+..+.+++.++..++.+++.++.|++.||+|+|+.+..+.++..+...+.++.++   .+.+++.+++.|++.+...
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG---PLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHH
Confidence            3555667889999999999999999999999999999999998888888887777766   7778888999999888777


Q ss_pred             hHHHHHHHhhcCccchhhHHHH
Q psy3312         162 PSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       162 ~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      +....++.+.+|++.|++..++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~  355 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLV  355 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeee
Confidence            7788899999999988876543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.97  E-value=5.5e-09  Score=82.53  Aligned_cols=132  Identities=20%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhh
Q psy3312          28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPG  107 (189)
Q Consensus        28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (189)
                      ....+.++..+.....++..+|.+.                          +++|+.++.+++.....+.+...+..+..
T Consensus       221 W~lsllY~~tFG~Fvgfs~~l~~~~--------------------------~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~G  274 (417)
T COG2223         221 WLLSLLYFATFGGFVGFSAYLPMYL--------------------------VTQFGLSPVTAGLIAFLFPLIGALARPLG  274 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHhcCCChhhHHHHHHHHHHHHHHHHhcc
Confidence            3366777888888888888888766                          38899999999999999999999999999


Q ss_pred             hhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc----hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312         108 ALIAERYGGKYVLGFGLLVSTLATLATPLAARS----FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       108 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      |+++||+|.+|++.......+++..+..+..+.    .+.+......+..++..|........++...+| ++-|...|+
T Consensus       275 G~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~  353 (417)
T COG2223         275 GWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGI  353 (417)
T ss_pred             chhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHH
Confidence            999999999999999988888888777766411    113333333344444444444555666777774 467777776


Q ss_pred             Hhh
Q psy3312         184 VFA  186 (189)
Q Consensus       184 ~~~  186 (189)
                      ...
T Consensus       354 vga  356 (417)
T COG2223         354 VGA  356 (417)
T ss_pred             HHH
Confidence            543

>TIGR00889 2A0110 nucleoside transporter

Probab=98.97  E-value=8.5e-09  Score=83.34  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=72.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+.|++.+++.++..+++++.|.++||+|| |+++.++.++..+...+..+.++   ++.+.+.|++.|++.+
T Consensus        31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~  107 (418)
T TIGR00889        31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT---PAGMFPVLLANSLAYM  107 (418)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHc
Confidence            7789999999999999999999999999999999965 77888888888777777777766   7788899999999877


Q ss_pred             cchhHHHHH
Q psy3312         159 PAYPSMNVI  167 (189)
Q Consensus       159 ~~~~~~~~~  167 (189)
                      ...+...++
T Consensus       108 ~~~~~~~~l  116 (418)
T TIGR00889       108 PTIALTNSI  116 (418)
T ss_pred             cHHHHHHHH
Confidence            776665554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.96  E-value=6.7e-09  Score=84.06  Aligned_cols=108  Identities=13%  Similarity=0.042  Sum_probs=76.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH---hhch-----hhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA---ARSF-----GAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~r~  151 (189)
                      +++|++..+.++......++.+++.++.|+++||+|||+.+..++++.+++.++..+.   ....     ....+....+
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (481)
T TIGR00879       312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL  391 (481)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence            6678888778888888999999999999999999999999998888777776665521   1110     0222222222


Q ss_pred             HHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +.+....+..+....++.|.+|+++|+++.++.+..
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  427 (481)
T TIGR00879       392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA  427 (481)
T ss_pred             HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHH
Confidence            222222223455667789999999999999987654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.95  E-value=8.1e-09  Score=82.32  Aligned_cols=98  Identities=17%  Similarity=0.043  Sum_probs=71.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc----hhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK----YVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGL  155 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  155 (189)
                      +++|.+..+.+++.+.+.++..+++++.|++.||+||+    +.+.+.....  ........++   +|.+++.|++.|+
T Consensus        32 ~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~l~i~~~l~g~  106 (382)
T PRK11128         32 KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHS---FWLLFVAIGLFNL  106 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhccc---HHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999994    3332222211  1111222234   8888899999999


Q ss_pred             ccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         156 GQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      +.+...+...++..++.  ++|++..+..
T Consensus       107 ~~~~~~~~~~a~~~~~~--~~~~~a~~~~  133 (382)
T PRK11128        107 FFSPLVPLTDALANTWQ--KQIGLDYGKV  133 (382)
T ss_pred             HHcccccHHHHHHHHHH--hhccCCcchH
Confidence            98888888888878774  4455544443

>KOG0569|consensus

Probab=98.95  E-value=7.7e-09  Score=84.20  Aligned_cols=141  Identities=14%  Similarity=0.060  Sum_probs=99.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHH
Q psy3312          20 ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWG   99 (189)
Q Consensus        20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (189)
                      ...|+...+.+.+...-.+............+.                           ++.|++..++.+......+.
T Consensus       265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~---------------------------~~aG~~~~~a~~an~~~g~v  317 (485)
T KOG0569|consen  265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF---------------------------KTAGFTPEEAQYANLGIGIV  317 (485)
T ss_pred             cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHH
Confidence            344666555444544444444444555556666                           77889999999999999999


Q ss_pred             HHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-h----H-HHHHHHHHHhhcccc-chhHHHHHHHhhc
Q psy3312         100 YVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-A----V-GILCARFIVGLGQGP-AYPSMNVILAQWV  172 (189)
Q Consensus       100 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~r~l~G~~~g~-~~~~~~~~~~~~~  172 (189)
                      ..+.++++.++.||+|||+.++.+..+..+..+++........ .    + ..+++.++..++.+. .-|...-+.+|++
T Consensus       318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf  397 (485)
T KOG0569|consen  318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELF  397 (485)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhC
Confidence            9999999999999999999999999998888877665432110 1    1 123344443333332 3477888999999


Q ss_pred             CccchhhHHHHHhhc
Q psy3312         173 PKTERGRMGALVFAG  187 (189)
Q Consensus       173 ~~~~r~~~~~~~~~~  187 (189)
                      |++.|..++++....
T Consensus       398 ~~~~R~aa~s~~~~~  412 (485)
T KOG0569|consen  398 PQSARSAAQSVATAV  412 (485)
T ss_pred             CccchHHHHHHHHHH
Confidence            999999999887653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.94  E-value=2.4e-08  Score=81.67  Aligned_cols=107  Identities=14%  Similarity=0.066  Sum_probs=77.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-AVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g  158 (189)
                      ++.|.+.....+......+...++.++.+++.||+|||++++.+.++.+++.++......... ........++.+.+.+
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  378 (479)
T PRK10077        299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA  378 (479)
T ss_pred             HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            567777666677777778888999999999999999999999999988888776654432110 1122233334444433


Q ss_pred             cc-hhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PA-YPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .. .+....+++|.+|+++|+++.|+.+.
T Consensus       379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~  407 (479)
T PRK10077        379 MSWGPVCWVLLSEIFPNAIRGKALAIAVA  407 (479)
T ss_pred             ccccchhHHHhHhhCChhHHHHHHHHHHH
Confidence            32 36678899999999999999998654

>KOG0253|consensus

Probab=98.93  E-value=4.6e-09  Score=81.98  Aligned_cols=131  Identities=15%  Similarity=0.237  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHH
Q psy3312          20 ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWG   99 (189)
Q Consensus        20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (189)
                      .+..+...+.+...+..........+...|...                           ..++.+..+..++......+
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~---------------------------~~w~~s~~q~~llt~~v~~g  125 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALD---------------------------EVWGPSEGQAPLLTLSVFLG  125 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------------------hhhchhhhhhhHHHHHHHhh
Confidence            344566666677777666655555666666665                           77888889999999999999


Q ss_pred             HHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312         100 YVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGR  179 (189)
Q Consensus       100 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~  179 (189)
                      ..+++..+|.++|++|||+.+....+...+...+.+.+++   +..+++.|.+.|+|.|+ .|...++-.|..|..+|..
T Consensus       126 mllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~  201 (528)
T KOG0253|consen  126 MLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWL  201 (528)
T ss_pred             hhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCc
Confidence            9999999999999999999999999999999999999988   77999999999999998 7888889999999888875


Q ss_pred             HH
Q psy3312         180 MG  181 (189)
Q Consensus       180 ~~  181 (189)
                      -+
T Consensus       202 ~~  203 (528)
T KOG0253|consen  202 LT  203 (528)
T ss_pred             ch
Confidence            43

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.93  E-value=9.8e-09  Score=92.22  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=91.2

Q ss_pred             eeeecccc-chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDER-TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +.+|++.. +.+++.+...++.+++.++.|++.||+++++++.++.++.+++.++..+..+   .+.+++..++.|++.+
T Consensus       261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~  337 (1146)
T PRK08633        261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS---LASVLVLFFLFGFSAG  337 (1146)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence            66788888 8999999999999999999999999999999988888888877777776665   6777788899999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ...+...+++.+.+|++.||+++|+.+.
T Consensus       338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~  365 (1146)
T PRK08633        338 LFIVPLNALIQFRAPEKELGKVLAANNF  365 (1146)
T ss_pred             HhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence            8888899999999999999999988764

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=1.4e-08  Score=80.34  Aligned_cols=105  Identities=26%  Similarity=0.286  Sum_probs=93.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      .++|++..+..++.....+..++++++.|+|.||+|.|+++..+++++.+.++...+...   ..-++++-.+.|+..|+
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~s~G~  357 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG---ELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHhcch
Confidence            689999999999999999999999999999999999999999999998887776555544   34556777889999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .++...++.++.+|+++-++.+|++...
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyalt  385 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALT  385 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhh
Confidence            9999999999999999999999988754

>TIGR00897 2A0118 polyol permease family

Probab=98.91  E-value=4.6e-08  Score=78.56  Aligned_cols=106  Identities=13%  Similarity=0.187  Sum_probs=74.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH-HHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG-FGLLVSTLATLATPLAAR--SFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~  156 (189)
                      +++|++..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...+..+.....+.  .++.+...+..++.|++
T Consensus       250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~  329 (402)
T TIGR00897       250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIF  329 (402)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            568888888899888999999999999999999999988764 333333333333332221  11255666778888888


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+...+ ....+.|.. |++|+++.|+.+..
T Consensus       330 ~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~  358 (402)
T TIGR00897       330 LAGYVP-LAAVFPTLA-PKHKGAAMSVLNLS  358 (402)
T ss_pred             HHHHHH-HHHHHHhhC-cchhHHHHHHHHHH
Confidence            776544 445667765 56899999988764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.90  E-value=2.5e-08  Score=82.65  Aligned_cols=105  Identities=23%  Similarity=0.200  Sum_probs=96.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|.++..+|++.+...+|.+++.++.+++.+|+++++++..+.+..+++.+..++.++   .+..++..++.|++...
T Consensus       247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~---~~~~~~~l~l~G~~~~~  323 (524)
T PF05977_consen  247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS---FWLALIALFLAGAAWII  323 (524)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999998888888887   78888888999999888


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ......+.+.+..|++.||+.++++...
T Consensus       324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~  351 (524)
T PF05977_consen  324 ANSSLNTLVQLSVPDWVRGRVFSIYQMV  351 (524)
T ss_pred             HHHHHHHHHHHhCCHHHHhHHHHHHHHH
Confidence            8888999999999999999999998653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.89  E-value=2.7e-08  Score=78.28  Aligned_cols=107  Identities=12%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHH-HHHHH-HHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLG-FGLLV-STLATLATPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      +++|+++.+.+++.+...++..++.++.|++.||+.+ |+... ..... ..++.......+... .+...+..++.|+.
T Consensus       245 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  323 (379)
T TIGR00881       245 QEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAAN-PLMDLICLFALGFL  323 (379)
T ss_pred             HHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHH
Confidence            5678888899999999999999999999999998643 33222 22111 111112211111111 44455666677766


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+..+....+..|.+|+++|+++.|+.+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  354 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFF  354 (379)
T ss_pred             HhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence            5556666677899999999999999998754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.89  E-value=4.1e-08  Score=78.54  Aligned_cols=95  Identities=19%  Similarity=0.242  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL  168 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  168 (189)
                      .+.+.++..++..++.++.|++.||+|||+.+..+.+...+..+...+.++   .+.+++.+++.|++.+...+....++
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT---PLQLGILRFLLGAADGALLPAVQTLL  336 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence            455556677888899999999999999999999988877777766666555   67778889999999999999999999


Q ss_pred             HhhcCccchhhHHHHHhh
Q psy3312         169 AQWVPKTERGRMGALVFA  186 (189)
Q Consensus       169 ~~~~~~~~r~~~~~~~~~  186 (189)
                      .+..|+++|++.+++.+.
T Consensus       337 ~~~~~~~~~g~~~~~~~~  354 (408)
T PRK09874        337 VYNSSNQIAGRIFSYNQS  354 (408)
T ss_pred             HHhCCcccceeeehHHHH
Confidence            999999999998887654

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.89  E-value=2.2e-08  Score=80.72  Aligned_cols=51  Identities=18%  Similarity=-0.000  Sum_probs=45.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA  130 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~  130 (189)
                      +++|+++.+.+++.++..++..+++++.|+++||+|||+++..+....++.
T Consensus        39 ~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         39 DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL   89 (420)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999999999988766555443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.89  E-value=7.3e-08  Score=74.97  Aligned_cols=98  Identities=11%  Similarity=0.182  Sum_probs=77.1

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA  160 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  160 (189)
                      .+|+++.+.++..+.+..+.+++.++.+++.||+|+|+++.++.++..++.++....+.   .. .....++.|++.+..
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~---~~-~~~~~~l~g~~~s~i  247 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG---YV-AMWFVLALGLFNSIM  247 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC---HH-HHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999988888777776655544433   22 233555789999999


Q ss_pred             hhHHHHHHHhhcCccchhhHHHH
Q psy3312         161 YPSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       161 ~~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      +|...+...+.+|++ .+++.++
T Consensus       248 ~P~~~s~a~~~~~~~-~~~asai  269 (310)
T TIGR01272       248 FPTIFSLALNALGRH-TSQGSGI  269 (310)
T ss_pred             HHHHHHHHHhhhhhh-hhhhHHH
Confidence            999999998988753 3444444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.89  E-value=2.2e-08  Score=81.79  Aligned_cols=105  Identities=21%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhHHH--HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVLGF--GLLVSTLATLATPLAARSFGAVGILCARFIVGL  155 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  155 (189)
                      +++|++..+.+++.+...++.++++++.|++.||.  ++|+....  ++++..+..++.....+   ++.+++.+++.|+
T Consensus       269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~  345 (455)
T TIGR00892       269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD---YTGLVIYCIFFGL  345 (455)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH
Confidence            55788999999999999999999999999999974  33433333  33333444444445555   7778889999999


Q ss_pred             ccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         156 GQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +.+...+....++.|.+|++++++..++.+..
T Consensus       346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  377 (455)
T TIGR00892       346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIV  377 (455)
T ss_pred             HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHH
Confidence            99988899999999999999999999988754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.88  E-value=7.2e-09  Score=82.06  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=84.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS--FGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~  157 (189)
                      +++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++..+.......  ...+.+.+..++.|++.
T Consensus       235 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  314 (385)
T TIGR00710       235 DIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN  314 (385)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            5688888899999999999999999999999999999999888887777766655543211  11344555677788888


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...+.......|..| ++|+++.++.+..
T Consensus       315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  343 (385)
T TIGR00710       315 SMISSIAMAYALEDFP-HVAGTASALFGTL  343 (385)
T ss_pred             HHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence            8888888888888886 6899998887643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2325|consensus

Probab=98.87  E-value=2.2e-08  Score=81.29  Aligned_cols=105  Identities=19%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHH-HHHhhch-hhHHHHHHHHHHhhcc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLAT-PLAARSF-GAVGILCARFIVGLGQ  157 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~r~l~G~~~  157 (189)
                      |.+.+.+..|++.++..++.+++.+.+|++..|.+. |+.++.+++...+++++. .+..... ..+.++++|++.|+|.
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~  144 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV  144 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence            356677788999999999999999999999999997 888999999999999988 4332222 3688999999999987


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      | .....-.++++-...++|.++++....
T Consensus       145 ~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~  172 (488)
T KOG2325|consen  145 G-NFAVLRAYIADASTVEDRPRAFAATSG  172 (488)
T ss_pred             c-cHHHHHHHHHhccCccchHHHHHHhhh
Confidence            6 457788999998888899988887654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.86  E-value=1.3e-08  Score=76.30  Aligned_cols=118  Identities=14%  Similarity=0.096  Sum_probs=94.6

Q ss_pred             HHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312          38 YVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK  117 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r  117 (189)
                      ......++..-|.++                           +.+|++.+|...+.....+|..++ ++.|.+.|++|++
T Consensus        15 ~Gt~Y~Fs~yS~~Lk---------------------------~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~   66 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLK---------------------------SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW   66 (250)
T ss_pred             cCcccchhhhhHHHH---------------------------HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH
Confidence            345556788888888                           899999999999999999998875 8889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         118 YVLGFGLLVSTLATLATPLAARSF----GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      .++.+|.+...++..+..++-+..    ++|.+.+..++.|.+......+......+.|| ++||++.|+.
T Consensus        67 ~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgil  136 (250)
T PF06813_consen   67 VVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGIL  136 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhh
Confidence            999999999999988776654332    36777777777777766666666777778896 6899988875

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.85  E-value=1.1e-08  Score=82.64  Aligned_cols=107  Identities=10%  Similarity=-0.043  Sum_probs=84.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCc-hhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGK-YVLGFGLLVSTLATLATPLAARSF---GAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~  151 (189)
                      +++|+++.+.+++.++..+..++..|+.|+++||    +||| +.++.+.+..+++.+++...++..   ..+++++.++
T Consensus        28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  107 (437)
T TIGR00792        28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI  107 (437)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence            7899999999999999999999999999999997    6774 467778777777777666655321   1456677888


Q ss_pred             HHhhccccchhHHHHHHHhhc-CccchhhHHHHHhh
Q psy3312         152 IVGLGQGPAYPSMNVILAQWV-PKTERGRMGALVFA  186 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~  186 (189)
                      +.+++.+.......++..|.. ++++|++..++...
T Consensus       108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~  143 (437)
T TIGR00792       108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRF  143 (437)
T ss_pred             HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHH
Confidence            888888877777778888887 46899988776543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.84  E-value=3.6e-08  Score=79.69  Aligned_cols=101  Identities=17%  Similarity=0.118  Sum_probs=79.6

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM  164 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  164 (189)
                      +..+.+++.....++.+++.++++++.||+|+|+++..+.++..++.++..+.++  +.+.+.+..++.|++.+...+..
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~  332 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS--NLPLILVLIILAGFGQNFVTGLV  332 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777888999999999999999999999999998888877766655432  15566777788899998888889


Q ss_pred             HHHHHhhcC-------ccchhhHHHHHhhc
Q psy3312         165 NVILAQWVP-------KTERGRMGALVFAG  187 (189)
Q Consensus       165 ~~~~~~~~~-------~~~r~~~~~~~~~~  187 (189)
                      .++++|..+       ++.+|...|+.+..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       333 WALVADTVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             HHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence            999998875       45578888877653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.83  E-value=8.2e-08  Score=78.29  Aligned_cols=106  Identities=9%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVL-GFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      ++.|++..+.+++...+.++..++.++.|+++||+  +||+.. .....+..++.++........ .+..++..++.|.+
T Consensus       282 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  360 (452)
T PRK11273        282 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN-PTVDMACMIVIGFL  360 (452)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHH
Confidence            55788888888888888899999999999999999  555432 222233333333222222111 33444455555554


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..........+..|.+|+++||++.|+.+.
T Consensus       361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  390 (452)
T PRK11273        361 IYGPVMLIGLHALELAPKKAAGTAAGFTGL  390 (452)
T ss_pred             HHhHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence            433333344567899999999999998754

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.83  E-value=9.8e-08  Score=77.45  Aligned_cols=107  Identities=14%  Similarity=-0.032  Sum_probs=66.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVL-GFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      +++|++..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+........+..+ .....+..+..|++
T Consensus       272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  350 (434)
T PRK11663        272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS-YVMQAACFFTIGFF  350 (434)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999  333322 221111111111111112111 22333334444544


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ............+|.+|+++|++..|+.+..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  381 (434)
T PRK11663        351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLF  381 (434)
T ss_pred             HhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence            3333333445678999999999999988754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.82  E-value=5.8e-08  Score=77.08  Aligned_cols=127  Identities=20%  Similarity=0.217  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      .....+.....+..+++.-|.+.                           +..|++.+..+++...+.++..++..+.|+
T Consensus       217 l~~t~l~~~g~F~~ftYi~P~L~---------------------------~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr  269 (394)
T COG2814         217 LLATFLFMTGHFALYTYIRPFLE---------------------------SVAGFSVSAVSLVLLAFGIAGFIGNLLGGR  269 (394)
T ss_pred             HHHHHHHHcchhhhHHhHHHHHH---------------------------HccCCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333344455556777888887                           788999999999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +.|| +.|+.+.....+.++..+.+.+..+.  .+..++.-+++|+..+.........+++ ..|+.+..+.++....
T Consensus       270 l~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~--~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa  343 (394)
T COG2814         270 LADR-GPRRALIAALLLLALALLALTFTGAS--PALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAA  343 (394)
T ss_pred             hccc-cchhHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHH
Confidence            9999 99999988888877777766665553  4566666677888877666666666666 4467888877776543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.82  E-value=9.2e-08  Score=74.58  Aligned_cols=88  Identities=15%  Similarity=0.218  Sum_probs=76.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+++.+....+...++..++.|.++||+|||+.-+..++++.++++ ....++   ++.++++|++.|++...
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~---~~~L~~GRvlgGiaTSL  137 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSN---YPVLLLGRVLGGIATSL  137 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccc---cHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999988886 344455   88999999999999988


Q ss_pred             chhHHHH-HHHhh
Q psy3312         160 AYPSMNV-ILAQW  171 (189)
Q Consensus       160 ~~~~~~~-~~~~~  171 (189)
                      .+..--+ ++.|.
T Consensus       138 LfS~FEsW~V~Eh  150 (354)
T PF05631_consen  138 LFSAFESWMVHEH  150 (354)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776666 44444

>KOG2563|consensus

Probab=98.81  E-value=4.1e-08  Score=78.32  Aligned_cols=141  Identities=13%  Similarity=0.060  Sum_probs=110.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312          19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW   98 (189)
Q Consensus        19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (189)
                      -.++||.+++...+..+.+......++...-...                           ..|+ +.....|...+|++
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~---------------------------~~Yg-s~~~~~wlsmIym~   90 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVN---------------------------SFYG-SSSAADWLSMIYMV   90 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehhHHHHHH---------------------------HHhc-chHHHHHHHHHHHH
Confidence            3456787777666666666666666665544443                           5666 66678898999999


Q ss_pred             HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc---hhhH--HHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312          99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS---FGAV--GILCARFIVGLGQGPAYPSMNVILAQWVP  173 (189)
Q Consensus        99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  173 (189)
                      .++...+++-|+.||+|-|..++++..+..+++.+-..+...   ..++  ....+..+.+..+-.....-..+..-|||
T Consensus        91 v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~  170 (480)
T KOG2563|consen   91 VSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFP  170 (480)
T ss_pred             HHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCC
Confidence            999999999999999999999999999999999877665443   2245  66688888888887777777789999999


Q ss_pred             ccchhhHHHHHhhc
Q psy3312         174 KTERGRMGALVFAG  187 (189)
Q Consensus       174 ~~~r~~~~~~~~~~  187 (189)
                      +++|+.+..+...+
T Consensus       171 ~~qra~A~~~~v~~  184 (480)
T KOG2563|consen  171 PDQRAIATVLGVMG  184 (480)
T ss_pred             cchhhhhhhHHHhc
Confidence            99999998877655

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.79  E-value=9.9e-08  Score=78.87  Aligned_cols=93  Identities=11%  Similarity=0.008  Sum_probs=59.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312          95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIVGLGQGPAYPSMNVILAQWVP  173 (189)
Q Consensus        95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  173 (189)
                      +..++.+++.++.++++||+|||++++++..+.+++..+.....+. .....+...-+...++..+..+....+.+|.+|
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p  422 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP  422 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence            3445666788899999999999999988887777666555543211 001111111111112122234566777899999


Q ss_pred             ccchhhHHHHHhhc
Q psy3312         174 KTERGRMGALVFAG  187 (189)
Q Consensus       174 ~~~r~~~~~~~~~~  187 (189)
                      ++.|+++.|+.+..
T Consensus       423 ~~~R~~~~g~~~~~  436 (502)
T TIGR00887       423 TRYRSTAHGISAAS  436 (502)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999988754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.78  E-value=8.9e-08  Score=75.95  Aligned_cols=138  Identities=17%  Similarity=0.063  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhh
Q psy3312          25 LIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNH  104 (189)
Q Consensus        25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (189)
                      ..+..+.++.+..+..+..+.-..|.+.                          .+..|++..++.+..+.+=++...++
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL--------------------------~e~k~~s~~~a~~a~~lfE~agl~G~  305 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYL--------------------------SEVKGFSLVKANWAISLFEVAGLPGT  305 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHH--------------------------HHhcCCCHHHHHHHHHHHHHHhhHHH
Confidence            3445577788888888888877777765                          27788999999999999999999999


Q ss_pred             hhhhhhhhhh--CCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312         105 IPGALIAERY--GGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG  181 (189)
Q Consensus       105 ~~~g~l~dr~--g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  181 (189)
                      +++||++||+  |||.. -++.++...++.....++++.+ ++...++.++.|+..-+..-.......|..|++.-|++.
T Consensus       306 Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~-~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~  384 (448)
T COG2271         306 LLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGS-YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTAT  384 (448)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchh
Confidence            9999999998  56644 4444555555555556666543 678888889999988777777777889999999999999


Q ss_pred             HHHhhcCC
Q psy3312         182 ALVFAGSY  189 (189)
Q Consensus       182 ~~~~~~~~  189 (189)
                      |+....+|
T Consensus       385 Gf~Glf~Y  392 (448)
T COG2271         385 GFVGLFAY  392 (448)
T ss_pred             chhhhHHH
Confidence            88766543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.78  E-value=5e-08  Score=79.01  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      ...+++..+..++..++.+++++++||+|+|+++..+.++..++.++..+.+..+ .+.+++..++.|++.+..+....+
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~gi~~~~~~~~~~a  338 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS-PWLVLILFILAGIGYGAFFVIPWA  338 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhHhhhccccccccc
Confidence            4567777888999999999999999999999999999999999998888876212 788899999999999999999999


Q ss_pred             HHHhhcCcc
Q psy3312         167 ILAQWVPKT  175 (189)
Q Consensus       167 ~~~~~~~~~  175 (189)
                      +++|..+.+
T Consensus       339 ~~ad~id~~  347 (428)
T PF13347_consen  339 MLADVIDYD  347 (428)
T ss_pred             ccccchhhH
Confidence            999998743

>PRK09848 glucuronide transporter; Provisional

Probab=98.78  E-value=5.1e-08  Score=79.35  Aligned_cols=106  Identities=23%  Similarity=0.098  Sum_probs=79.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|.++...++......++.+++.++.+++.||+|+|+++..+.++..++.++..+.+... .+.+.+..++.|+|.+.
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~g~G~~~  335 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWS-LPVALVALAIASIGQGV  335 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchh-HHHHHHHHHHHHHHHHH
Confidence            45665554444444444677888999999999999999999999988887777666544322 66667778889999999


Q ss_pred             chhHHHHHHHhhcCccc-------hhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTE-------RGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-------r~~~~~~~~~  186 (189)
                      ..+...++.+|..+.++       +|...|+.+.
T Consensus       336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence            99999999999987653       4777766554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.77  E-value=2.9e-08  Score=89.32  Aligned_cols=105  Identities=20%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--------------------hh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--------------------AR  139 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~  139 (189)
                      +.+|.+..+.+++.+...++.+++.++.|+++|+.++++.+..+.++.++..+...+.                    .+
T Consensus       254 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  333 (1140)
T PRK06814        254 ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH  333 (1140)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence            5688899999999999999999999999999998887776666665555555434332                    22


Q ss_pred             chhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         140 SFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       140 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                         .+.+++..++.|++.+...+...+++.+.+|+++||+++|+.+..
T Consensus       334 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~  378 (1140)
T PRK06814        334 ---GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVL  378 (1140)
T ss_pred             ---cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHH
Confidence               567778888899999988999999999999999999999987654

>TIGR00898 2A0119 cation transport protein

Probab=98.77  E-value=6.1e-08  Score=79.92  Aligned_cols=94  Identities=15%  Similarity=0.101  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312          93 LSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV  172 (189)
Q Consensus        93 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  172 (189)
                      .....+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.. .+..++..++.+++.+..++....+.+|.+
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3455566778889999999999999999999988888887777665422 244455556667777777888899999999


Q ss_pred             CccchhhHHHHHhhc
Q psy3312         173 PKTERGRMGALVFAG  187 (189)
Q Consensus       173 ~~~~r~~~~~~~~~~  187 (189)
                      |++.|++++|+.+..
T Consensus       440 p~~~r~~~~g~~~~~  454 (505)
T TIGR00898       440 PTVVRNLGVGVCSTM  454 (505)
T ss_pred             cHHHHhhhHhHHHHH
Confidence            999999999987654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.75  E-value=1.8e-07  Score=75.06  Aligned_cols=104  Identities=15%  Similarity=0.049  Sum_probs=80.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|.++.+.+++.+...++.+++.+..+++.||.++|+++..+.++ ++...+..+.++   .+...+..++.|++.+.
T Consensus       234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~---~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHS---LLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhH---HHHHHHHHHHHHHhhhh
Confidence            66788999999999999999999999999999999999888777543 333333444444   66666777788998888


Q ss_pred             chhHHHHHHHhhcCccc-hhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTE-RGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~  187 (189)
                      ..+...+.+.+..|++. +|++.++.+..
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~  338 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFN  338 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHH
Confidence            78878888888765544 68888776654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.74  E-value=1.9e-07  Score=75.37  Aligned_cols=103  Identities=14%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             eeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312          82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA  160 (189)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  160 (189)
                      .+.+..+.+.+.....++..++.++.|+++||+++|+. +....++..++..+ ......  ....+..-.+.+++....
T Consensus       274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~~~  350 (412)
T TIGR02332       274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL-ASATDH--NLIQLLGIIMASMGSFSA  350 (412)
T ss_pred             CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHhhhh
Confidence            35567788888899999999999999999999997774 44444333333222 222211  122122222223333333


Q ss_pred             hhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         161 YPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       161 ~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+.......|.+|+++|+++.|+.+..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~a~g~~~~~  377 (412)
T TIGR02332       351 MAIFWTTPDQSISLQARAIAIAVINAT  377 (412)
T ss_pred             hhHHHhhcccccchHHHHHHHHHHHHh
Confidence            344445556789999999999988754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.74  E-value=1.5e-07  Score=75.56  Aligned_cols=107  Identities=15%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR--SFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~  157 (189)
                      +++|+++.+.++......++..++.++.|++.||+++|+.+.++.++..++..+..+.+.  ..+.+++.+..++.|++.
T Consensus       244 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~  323 (406)
T PRK15402        244 SGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI  323 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence            567888888888877778888999999999999999999999888877777666655431  112556677788889888


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...+........ .++++|++..++.+..
T Consensus       324 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~  352 (406)
T PRK15402        324 GLANAGLYRLTLF-SSDVSKGTVSAAMGML  352 (406)
T ss_pred             HHHhhhHHHHHhh-hccccccHHHHHHHHH
Confidence            8776666555443 3458999999887654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.73  E-value=1.7e-07  Score=74.92  Aligned_cols=108  Identities=14%  Similarity=0.015  Sum_probs=75.4

Q ss_pred             eeeeccccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh---chhhHHHHHHHHHHhh
Q psy3312          80 YEFDWDERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR---SFGAVGILCARFIVGL  155 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~  155 (189)
                      +|.|+++.+.+++..... ....++.++.|++.||+|+|+.+..+.++..+..........   ....+.+.....+.++
T Consensus       236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (390)
T TIGR02718       236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL  315 (390)
T ss_pred             HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence            457999999999888765 466778899999999999999988877665333322221111   0113334445556667


Q ss_pred             ccccchhHHHHHHHhhcCc-cchhhHHHHHhhc
Q psy3312         156 GQGPAYPSMNVILAQWVPK-TERGRMGALVFAG  187 (189)
Q Consensus       156 ~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~  187 (189)
                      +.+..++.......+..++ +++++.+++.++.
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (390)
T TIGR02718       316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQST  348 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            7777778888888888876 7889998887653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.73  E-value=1.8e-07  Score=72.94  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=93.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|++.+.++++.+...+...+.+++..+++.|+|.++.+..++++.+++.++=... +   .+.++.+-.+.|.+.+.
T Consensus        40 ~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~---~~~L~~gt~l~G~gIav  115 (395)
T COG2807          40 QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G---LPLLFLGTLLAGAGIAV  115 (395)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999999999999999999999999877665 3   56788899999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .....+.++-+.|| ++-+..+++|...
T Consensus       116 ~nVLLPslIK~~Fp-k~~~~mtglYs~s  142 (395)
T COG2807         116 INVLLPSLIKRDFP-KRVGLMTGLYSTS  142 (395)
T ss_pred             HHHhhhHHHHhhcc-cchhhHHhHHHHH
Confidence            99999999999996 6788888888653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.71  E-value=1.2e-07  Score=75.98  Aligned_cols=98  Identities=11%  Similarity=0.053  Sum_probs=77.1

Q ss_pred             eccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchh
Q psy3312          83 DWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYP  162 (189)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  162 (189)
                      +.+....+.+.+...+...++.++.|++.||+|+|+.+.++.++.++...+....++   .+.+++.++++|++......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~  326 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT---ALEVVILKMLHAFEVPFLLV  326 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHH
Confidence            444556788888888888999999999999999999999998888887776666655   77778889999988766556


Q ss_pred             HHHHHHHhhcCccchhhHHHH
Q psy3312         163 SMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       163 ~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      ....+..+..+++.+++..+.
T Consensus       327 ~~~~~~~~~~~~~~~at~~~~  347 (396)
T TIGR00882       327 GCFKYITSQFDVRLSATIYLI  347 (396)
T ss_pred             HHHHHHHHhCCcceEEEeehH
Confidence            666677788887777765444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.71  E-value=4.9e-07  Score=73.20  Aligned_cols=103  Identities=20%  Similarity=0.323  Sum_probs=85.7

Q ss_pred             eeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312          82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA  160 (189)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  160 (189)
                      +|++++++.-+.+.+..-.-+..++.||++||+ |+|+.+..|.++.+++.++.+.....+ ...+.++.++.++|.|..
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~-~~gl~i~L~~I~iG~Gl~  134 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG-PGGLYIGLALIIVGTGLF  134 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-ccHHHHHHHHHHhccccc
Confidence            679999988888888887788999999999998 999999999999999999988875111 557788888888999999


Q ss_pred             hhHHHHHHHhhcCccc--hhhHHHHHh
Q psy3312         161 YPSMNVILAQWVPKTE--RGRMGALVF  185 (189)
Q Consensus       161 ~~~~~~~~~~~~~~~~--r~~~~~~~~  185 (189)
                      -+....++.|.+|+++  |-.++++++
T Consensus       135 K~NiS~llg~ly~~~DprrD~gFt~fY  161 (498)
T COG3104         135 KPNISSLLGELYPKDDPRRDGGFTLFY  161 (498)
T ss_pred             cccHHHHHHHhcCCCCcccCCCccEEE
Confidence            9999999999998754  344444443

>PRK11043 putative transporter; Provisional

Probab=98.71  E-value=2.3e-07  Score=74.33  Aligned_cols=106  Identities=17%  Similarity=0.241  Sum_probs=77.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH---hhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA---ARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~  156 (189)
                      +++|++..+.++......++..++..+.+++.||+|+|+.+....+..+++.+.....   .... .+.+++...+.|++
T Consensus       231 ~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  309 (401)
T PRK11043        231 EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS-LVPLLIPFCVMAAA  309 (401)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHH
Confidence            5678888888988888888899999999999999999987766655554444332221   1111 44555666778888


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+..++.......+..| ++|+++.++.+..
T Consensus       310 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  339 (401)
T PRK11043        310 NGAIYPIVVAQALRPFP-QATGKAAALQNTL  339 (401)
T ss_pred             HHHHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence            88888888887777775 6899999988753

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.71  E-value=3e-07  Score=75.88  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             eeeeccccchhHHHH-HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILS-SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL-AARSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~  157 (189)
                      +++|++..+.+++.. ...++.+++.++.|++.||+|+|+.+.++.++.++..++... .....+.+.+.+..++..+..
T Consensus       251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~  330 (491)
T PRK11010        251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG  330 (491)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            568999999999874 566899999999999999999998877766655554433221 111111444445556655555


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      |...+...++..+..+++.+++..++.++
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s  359 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSA  359 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            55667778888899998888888887765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.71  E-value=1.8e-07  Score=75.19  Aligned_cols=104  Identities=15%  Similarity=0.098  Sum_probs=78.0

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhh-hhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAE-RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+.++.+.+++.+...++......+.+++.| |++.++.+..++++.+++..+....++   .+.+.+..++.|++.+.
T Consensus       237 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~~~g~~~  313 (400)
T PRK11646        237 DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN---LQQLFTLICLFYIGSII  313 (400)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH
Confidence            33335677888877777766666666666665 566677777787777777776666665   66666777788888887


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+...+++.+..|+++|++..|+.+..
T Consensus       314 ~~p~~~~~~~~~~p~~~~g~~~g~~~~~  341 (400)
T PRK11646        314 AEPARETLSASLADARARGSYMGFSRLG  341 (400)
T ss_pred             HHccHHHHHHhcCCcccchhhhhHHHHH
Confidence            8888899999999999999999987653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.70  E-value=3.9e-07  Score=72.19  Aligned_cols=106  Identities=12%  Similarity=0.056  Sum_probs=73.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|+++.+.+++.....++.+++.++.|++.||+|+|+.+..+.++..+..+...... .....+...+...+.+.+.+
T Consensus       223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T PRK11102        223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS  302 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999999999999999998888776544433322221 11114444444444444444


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .........+.|..| ++|++..++.+.
T Consensus       303 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~  329 (377)
T PRK11102        303 MISSNAMAVILDEFP-HMAGTASSLAGT  329 (377)
T ss_pred             HhhHHHHHHHhcccc-ccchHHHHHHHH
Confidence            455556667777765 789988887654

>PRK10054 putative transporter; Provisional

Probab=98.68  E-value=1.4e-07  Score=75.73  Aligned_cols=102  Identities=9%  Similarity=-0.004  Sum_probs=80.8

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHhhcccc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-ARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+.+....+++.....+.....+++.|++.||+++|+.+..++++..++..+..+. .+   .+.+++..++.|++.+.
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~  314 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNS---LLLWGMSAAVFTVGEII  314 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchH---HHHHHHHHHHHHHHHHH
Confidence            345556667777777777777788899999999999999999988887777666554 23   56667788899999887


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ..|.....+.+..|++.|++..+..+
T Consensus       315 ~~p~~~~~~~~~~p~~~~~~~~~~~~  340 (395)
T PRK10054        315 YAPGEYMLIDHIAPPGMKASYFSAQS  340 (395)
T ss_pred             HHhhHHHHHHHhCCcccceehHhHHH
Confidence            78888889999999999998877543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.68  E-value=6.4e-07  Score=71.87  Aligned_cols=100  Identities=16%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+.+++.....++..++.++.+++.||.+ |+.+..+.++.. ...++.....+   .+.+.+..++.|++.+
T Consensus       245 ~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~G~~~~  320 (394)
T PRK10213        245 NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSD---KIVATGVAIIWGLTFA  320 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence            677889888999999999999999999999999964 444444434433 33333333333   6677778888999998


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ...+...+++.+..| +++++..++.
T Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~  345 (394)
T PRK10213        321 LVPVGWSTWITRSLA-DQAEKAGSIQ  345 (394)
T ss_pred             hhhHHHHHHHHHHCc-ccHHHHHHHH
Confidence            888888888898886 4455554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.67  E-value=2.6e-07  Score=75.29  Aligned_cols=81  Identities=11%  Similarity=0.011  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH-HHhhc--hhhHHHHHHHHHHhhccccchhHHHHHHHh
Q psy3312          94 SSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP-LAARS--FGAVGILCARFIVGLGQGPAYPSMNVILAQ  170 (189)
Q Consensus        94 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~  170 (189)
                      ....+...+..+++|+++||+|+|+++.++.+...+...... ..+..  .+++.+.+..+...++.|........++.+
T Consensus       293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~  372 (462)
T PRK15034        293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV  372 (462)
T ss_pred             HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence            345677888999999999999999999988887776664322 22211  125555555555556666666777778888


Q ss_pred             hcCc
Q psy3312         171 WVPK  174 (189)
Q Consensus       171 ~~~~  174 (189)
                      .+|+
T Consensus       373 ~f~~  376 (462)
T PRK15034        373 IFRQ  376 (462)
T ss_pred             HHhh
Confidence            8864

>PRK10133 L-fucose transporter; Provisional

Probab=98.66  E-value=3.9e-07  Score=74.21  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=79.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..+...+..+.++   . ..+....+.|++.+.
T Consensus       288 ~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---H-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---h-HHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999998887777666555544433   2 224566788999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHH
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      .+|.......+.+|+ +.+.+.++.
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~  387 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFI  387 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHH
Confidence            999999999998865 344444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.62  E-value=6.5e-07  Score=71.41  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|+++.+.+++.+...++.+++.++.|++.||+|+|+.+..+.++..++.++.....+.  .+..++..++.+++...
T Consensus       228 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~g~~~  305 (382)
T PRK10091        228 FISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM--KTASLIFAFICCAGLFA  305 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999999999999999999988888777766554432221  34445555566665544


Q ss_pred             chhHHH-HHHHhhcCccchhhH
Q psy3312         160 AYPSMN-VILAQWVPKTERGRM  180 (189)
Q Consensus       160 ~~~~~~-~~~~~~~~~~~r~~~  180 (189)
                      ..+... ....+..+++.++..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~  327 (382)
T PRK10091        306 LSAPLQILLLQNAKGGELLGAA  327 (382)
T ss_pred             hhHHHHHHHHHhCCcchHHHHH
Confidence            444333 344455555556654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.60  E-value=1.1e-06  Score=66.33  Aligned_cols=99  Identities=38%  Similarity=0.644  Sum_probs=80.7

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+..+ ...+.+++.|+++|++.+...+....
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~  117 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-VGLALLLILRLLQGLGGGGLLPVASA  117 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            46788899999999999999999999999998888887665555555555544 22778899999999999999999999


Q ss_pred             HHHhhcCc-cchhhHHHHHhh
Q psy3312         167 ILAQWVPK-TERGRMGALVFA  186 (189)
Q Consensus       167 ~~~~~~~~-~~r~~~~~~~~~  186 (189)
                      ++.|+.|+ ++|+...+....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~  138 (338)
T COG0477         118 LLSEWFPEATERGLAVGLVTL  138 (338)
T ss_pred             HHHHhcCchhHHHHHHHHHHH
Confidence            99999987 678877776544

>KOG4686|consensus

Probab=98.60  E-value=4.6e-09  Score=79.48  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=90.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      .+.+++.++..++.+++.+..++-.++.|++.|| +|-|..-++-+++..++.++++.-.-.+.+|.+..+|++.|+|.-
T Consensus        72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE  151 (459)
T KOG4686|consen   72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE  151 (459)
T ss_pred             cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch
Confidence            7778888888999999999999999999999995 587777777777777788777654433349999999999999988


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..-.+++.+..-||.-||.+..+|+..+
T Consensus       152 SlAVaQN~yav~wFKGKELn~vfGlqlS  179 (459)
T KOG4686|consen  152 SLAVAQNKYAVYWFKGKELNFVFGLQLS  179 (459)
T ss_pred             hhhhhhcceeEEEecCccccchhhHHHH
Confidence            8888999999999999999998888654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.60  E-value=2.6e-07  Score=75.94  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCch-------hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY-------VLGFGLLVSTLATLATPLAARSFGAVGILCARFI  152 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  152 (189)
                      +++|++..+.+.+.+...++.+++.++.|+++||++||+       .+.+..++.++..++.....+   .+...+..++
T Consensus       281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~---~~~~~~~~~l  357 (476)
T PLN00028        281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANS---LGAAIVVMIL  357 (476)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHH
Confidence            567899999999999999999999999999999998752       222222222222233333333   3344444455


Q ss_pred             HhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         153 VGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       153 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      .+++.+...+....++.+.. +++|+...|+.+.+.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g  392 (476)
T PLN00028        358 FSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGG  392 (476)
T ss_pred             HHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccc
Confidence            55554444444555556654 578999999876654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.59  E-value=5.3e-07  Score=72.01  Aligned_cols=93  Identities=8%  Similarity=0.023  Sum_probs=65.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +++|+++.+.+.+.+...++.+++.++.+++.||+|||+.+..+.++..++..+..+.+.   .+..+....+.+.+.+.
T Consensus       232 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        232 EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS---HAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            567888888899889999999999999999999999999999998888887777666554   33333333343443333


Q ss_pred             chhHHHHHHHhhcCccch
Q psy3312         160 AYPSMNVILAQWVPKTER  177 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r  177 (189)
                      ..+.  ....+..|.++|
T Consensus       309 ~~~~--~~~~~~~~~~~~  324 (392)
T PRK10473        309 GFGV--AMSQALGPFSLR  324 (392)
T ss_pred             HhHH--HHHHHhccCccc
Confidence            3332  233445555444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.59  E-value=7.4e-07  Score=71.71  Aligned_cols=106  Identities=16%  Similarity=0.120  Sum_probs=85.5

Q ss_pred             eeee-ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHH----HHHHHHh
Q psy3312          80 YEFD-WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGIL----CARFIVG  154 (189)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~l~G  154 (189)
                      ++.| .+....+.+.+...+.=++.-...+++..|+|.|+++.++++..++=..+.+...+.  .+...    ....++|
T Consensus       235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~--~~~~~~~~~l~q~lhG  312 (400)
T PF03825_consen  235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP--WPFIVALQLLGQLLHG  312 (400)
T ss_pred             HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHhhhh
Confidence            4555 566666777677777778888999999999999999999999999998888887331  22322    3345699


Q ss_pred             hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +..+..+.+...++.+.+|++.|+++.+++...
T Consensus       313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~  345 (400)
T PF03825_consen  313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSAL  345 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            999999999999999999999999999998653

>PRK09669 putative symporter YagG; Provisional

Probab=98.58  E-value=3.5e-07  Score=74.42  Aligned_cols=106  Identities=10%  Similarity=-0.040  Sum_probs=79.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCc-hhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGK-YVLGFGLLVSTLATLATPLAARSF---GAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~  151 (189)
                      +++|+++...+.+..+..+..++..|+.|+++||    +||| +.++.+.+..++...+....++.+   ..+++++..+
T Consensus        38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~  117 (444)
T PRK09669         38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI  117 (444)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence            7899999999999999999999999999999998    7774 556667666666665544444211   1456666666


Q ss_pred             HHhhccccchhHHHHHHHhhc-CccchhhHHHHHh
Q psy3312         152 IVGLGQGPAYPSMNVILAQWV-PKTERGRMGALVF  185 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~  185 (189)
                      +.+.+.........++.+|+. ++++|.+..++..
T Consensus       118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~  152 (444)
T PRK09669        118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRF  152 (444)
T ss_pred             HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHH
Confidence            777666666667778999988 4588987655543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.56  E-value=8.2e-07  Score=70.72  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=60.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc---hhHH-HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK---YVLG-FGLLVSTLATLATPLAARSFGAVGILCARFIVGL  155 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  155 (189)
                      ++.+++.. .+.......+...++   .++++||.+||   +... ...++.++......+..+   .+..++.-.+.|+
T Consensus       220 ~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~  292 (368)
T TIGR00903       220 RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN---RLALFAFIGIAGL  292 (368)
T ss_pred             HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH
Confidence            44555543 444444444444444   57888887654   3322 233333333333333333   3344455566777


Q ss_pred             ccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         156 GQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +....++....+.+|.+|++.|+++.|+.+..
T Consensus       293 ~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~  324 (368)
T TIGR00903       293 LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFT  324 (368)
T ss_pred             hhhhhHHHHHHHHHHhcchhhcCcccchhhHH
Confidence            77777788889999999999999999998764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.56  E-value=1.8e-06  Score=69.73  Aligned_cols=94  Identities=10%  Similarity=0.015  Sum_probs=72.9

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM  164 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  164 (189)
                      +....+...+.+.....++.++.+++.||+++|+++.+..++..+..++....++   .. .+...++.|++.+..+|..
T Consensus       267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---~~-~~~~l~~~glf~s~~fp~i  342 (410)
T TIGR00885       267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG---HV-GLYCLTLCSAFMSLMFPTI  342 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHHHHHHH
Confidence            3344455566677888999999999999999999998888888888777776555   32 3566678889999999999


Q ss_pred             HHHHHhhcCccchhhHHH
Q psy3312         165 NVILAQWVPKTERGRMGA  182 (189)
Q Consensus       165 ~~~~~~~~~~~~r~~~~~  182 (189)
                      ..+..+..+++.+....+
T Consensus       343 ~sl~~~~~g~~~~~~s~~  360 (410)
T TIGR00885       343 YGIALKGLGQDTKYGAAG  360 (410)
T ss_pred             HHHHHhhhhhhhhhhHHH
Confidence            999999998766543333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.54  E-value=1.3e-06  Score=70.97  Aligned_cols=106  Identities=8%  Similarity=0.004  Sum_probs=65.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHH---HHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTL---ATLATPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      +..|+++.+.++....+.++.+++.++.|++.||+++++....+.....+   +.......+... .+...+..++.|++
T Consensus       280 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  358 (438)
T TIGR00712       280 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN-PLVDMICMIVIGFL  358 (438)
T ss_pred             HccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHH
Confidence            55788888899998999999999999999999999754322223222211   111111111111 33333444455554


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..+..........|.+|+++|+++.|+.+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  388 (438)
T TIGR00712       359 IYGPVMLIGLHALELAPKKAAGTAAGFTGL  388 (438)
T ss_pred             HccHHHHHHHHHHHhcChhheeeehhhhch
Confidence            333223334567899999999999998754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0253|consensus

Probab=98.53  E-value=3.8e-07  Score=71.56  Aligned_cols=87  Identities=15%  Similarity=0.099  Sum_probs=65.9

Q ss_pred             HHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHhhccccchhHHHHHHHhhcCcc
Q psy3312          97 FWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-AVGILCARFIVGLGQGPAYPSMNVILAQWVPKT  175 (189)
Q Consensus        97 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~  175 (189)
                      .+.-.-|.++.+++.||+|||+.+..+.++++++.++...+.+... ..++..+|++    ..+.+...+++..|.+|.+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchh
Confidence            3445568889999999999999999999999998887776655221 1233455544    4555666788999999999


Q ss_pred             chhhHHHHHhhc
Q psy3312         176 ERGRMGALVFAG  187 (189)
Q Consensus       176 ~r~~~~~~~~~~  187 (189)
                      .|+++.|.....
T Consensus       467 vRatgvGtcSsm  478 (528)
T KOG0253|consen  467 VRATGVGTCSSM  478 (528)
T ss_pred             hhhcchhhhhhH
Confidence            999999887653

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.52  E-value=1.1e-06  Score=72.31  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHhhccccchh
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--ARSFGAVGILCARFIVGLGQGPAYP  162 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~g~~~~  162 (189)
                      +....+++.+...++.+++.++++++.||+|+|+.+.++.++..++.+...+.  ...++.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            44456666677778889999999999999999999988887766555544321  1111255666777888899988888


Q ss_pred             HHHHHHHhhcC
Q psy3312         163 SMNVILAQWVP  173 (189)
Q Consensus       163 ~~~~~~~~~~~  173 (189)
                      ...++++|..+
T Consensus       344 ~~~am~ad~id  354 (473)
T PRK10429        344 LQVIMVADTVD  354 (473)
T ss_pred             HHHHHHhhhhh
Confidence            88999999965

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.51  E-value=5.8e-07  Score=55.89  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=69.3

Q ss_pred             HHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312          38 YVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK  117 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r  117 (189)
                      ...+..+.+..|.|.                           ++.+++.++.+++.+..++||.+|.+...++.++..++
T Consensus         5 GigRFayTplLP~M~---------------------------~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~   57 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQ---------------------------ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR   57 (85)
T ss_pred             hhHHHHHHhHhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            456778899999998                           89999999999999999999999999999999998889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q psy3312         118 YVLGFGLLVSTLATLATPLAAR  139 (189)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~  139 (189)
                      +.+..+.+...+..+.+++..+
T Consensus        58 ~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   58 RLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999888877

Note that many members are hypothetical proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=98.51  E-value=1.4e-06  Score=70.97  Aligned_cols=84  Identities=8%  Similarity=0.056  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL  168 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  168 (189)
                      .+.+.....+..+++.++++++.||+|+|+.+..+.+...+......+.+... .+.+++..++.|++.+...+...+++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSN-VWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566777888999999999999999999888776665444333332222 66667777889999999999999999


Q ss_pred             HhhcC
Q psy3312         169 AQWVP  173 (189)
Q Consensus       169 ~~~~~  173 (189)
                      +|..+
T Consensus       345 ad~~d  349 (444)
T PRK09669        345 SDVVD  349 (444)
T ss_pred             Hhhhh
Confidence            99885

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.49  E-value=2.7e-06  Score=68.50  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC-CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG-GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      ++.|++..|+|++.+...+..+++++++|.++||++ +|+++.+..++.++.........+   ++.+++..++..+...
T Consensus        30 ~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~---f~~~~~~~~l~~~~~~  106 (400)
T PF03825_consen   30 ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS---FWWLFVIMLLFSFFFS  106 (400)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHc
Confidence            778899999999999999999999999999999986 467777777776665555555555   7777777778888888


Q ss_pred             cchhHHHHHHHhhcC
Q psy3312         159 PAYPSMNVILAQWVP  173 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~  173 (189)
                      ...|...++..+...
T Consensus       107 p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen  107 PTMPLSDSIALSYLG  121 (400)
T ss_pred             cHHHHHHHHHHHHcc
Confidence            888888888888775

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.48  E-value=2e-06  Score=69.02  Aligned_cols=103  Identities=12%  Similarity=0.123  Sum_probs=72.9

Q ss_pred             eeeeccccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHH---HHHhhchhhHHHHHHH----H
Q psy3312          80 YEFDWDERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLAT---PLAARSFGAVGILCAR----F  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r----~  151 (189)
                      +++|+++.+.+++..... ++.+++.++.|++.||+|+|+.+..+.++..+..+..   +..++  +.+.++...    +
T Consensus       238 ~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~  315 (402)
T PRK11902        238 RGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK--HLWTMALAIGIENL  315 (402)
T ss_pred             HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHH
Confidence            668899999999876544 5688999999999999999998877776665554433   22221  144444433    3


Q ss_pred             HHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ..|++.+...+....++.+.+|.++++...++.
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (402)
T PRK11902        316 CGGMGTAAFVALLMALCNRSFSATQYALLSALA  348 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            556667777888888999999888777644443

>KOG2504|consensus

Probab=98.47  E-value=3e-06  Score=70.19  Aligned_cols=131  Identities=21%  Similarity=0.213  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhh
Q psy3312          26 IGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHI  105 (189)
Q Consensus        26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (189)
                      .+++..+...+............|...                           ...+.+..+...+.++..+..+++.+
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~---------------------------~~~g~~~~~aa~l~Siigi~~i~gRi  351 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYA---------------------------KSLGLSSNDAAFLLSIIGVSDIIGRI  351 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhcCCChhhhHHHHHHHHHhhhhhhh
Confidence            334455555566666666667777777                           67889999999999999999999999


Q ss_pred             hhhhhhhhhC--CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312         106 PGALIAERYG--GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       106 ~~g~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      +.|+++|+..  ++.+..++++..+++.+..++..+   ++.+++.-.+.|+..|........++.|..+.++-..+.|+
T Consensus       352 ~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl  428 (509)
T KOG2504|consen  352 ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT---YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGL  428 (509)
T ss_pred             hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHH
Confidence            9999999998  445666777777788888888888   88999999999999999888888899999999998888888


Q ss_pred             Hhh
Q psy3312         184 VFA  186 (189)
Q Consensus       184 ~~~  186 (189)
                      ...
T Consensus       429 ~l~  431 (509)
T KOG2504|consen  429 LLL  431 (509)
T ss_pred             HHH
Confidence            654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.47  E-value=5.6e-06  Score=64.78  Aligned_cols=105  Identities=16%  Similarity=0.218  Sum_probs=84.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      .|-|+++.+.|++.+...+..+...+....+++|. ++|+.......+..++...+.+.+... .+..   -++.|+|.|
T Consensus       236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~-~~lw---~~llG~G~G  311 (395)
T COG2807         236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL-PILW---ALLLGLGQG  311 (395)
T ss_pred             HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH-HHHH---HHHHhCccc
Confidence            88999999999999999999999999999999976 677888888888888888887887754 2221   488999999


Q ss_pred             cchhHHHHHHHhhcCc-cchhhHHHHHhhcC
Q psy3312         159 PAYPSMNVILAQWVPK-TERGRMGALVFAGS  188 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~  188 (189)
                      ..++....++....+. ++-++..++.+...
T Consensus       312 ~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G  342 (395)
T COG2807         312 GAFPLALTLILLRSSDAAIAAALSGMAQGVG  342 (395)
T ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence            9999999999888764 44455555555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.45  E-value=3.8e-06  Score=68.71  Aligned_cols=108  Identities=12%  Similarity=-0.025  Sum_probs=65.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhH--------HHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVL--------GFGLLVSTLATLATPLAARSFGAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  151 (189)
                      +.+|.+..+.++..+...++..++.++.|+++||+++|+..        ..+.........+........+.+..++...
T Consensus       290 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (465)
T TIGR00894       290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT  369 (465)
T ss_pred             HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            66888999999999999999999999999999998755321        1111111111111111111111333344445


Q ss_pred             HHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                      +.+.+.+...+.......|..| +.+|...++.+...
T Consensus       370 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~  405 (465)
T TIGR00894       370 LANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPG  405 (465)
T ss_pred             HHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHH
Confidence            5555555555555555567665 58899988877643

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.40  E-value=9.4e-06  Score=65.19  Aligned_cols=102  Identities=12%  Similarity=0.069  Sum_probs=87.3

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA  160 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  160 (189)
                      +-+.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++-..+++++++   .+.+.+.+.+.|+-.+..
T Consensus       253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~---~~~i~~~klLH~~e~~l~  329 (412)
T PF01306_consen  253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN---PWVISLIKLLHALEFPLL  329 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S---HHHHHHHHHHHHHHHHHH
T ss_pred             ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHH
Confidence            33445567899888888889999999999999999999999999999999999999998   889999999999999999


Q ss_pred             hhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         161 YPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       161 ~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ......++++.+|++..++...+.+
T Consensus       330 lva~fkYI~~~fd~rlsAt~y~v~~  354 (412)
T PF01306_consen  330 LVAAFKYITAHFDKRLSATLYLVGF  354 (412)
T ss_dssp             HHHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHhHHHHHHHHHH
Confidence            9999999999999988888877754

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.38  E-value=7.7e-06  Score=67.79  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHhhhhh----hhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch------hhHHHHHHHHHHhhccc
Q psy3312          89 QGLILSSFFWGYVLNHIPG----ALIAERYGGKYVLGFGLLVSTLATLATPLAARSF------GAVGILCARFIVGLGQG  158 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~l~G~~~g  158 (189)
                      .+++.+...+..++..++.    +++.+|++..+.+.+|+++.+++.++.+...+..      +.++++..++++|+|+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666666666666666    5556666666788889999999888777665421      14578889999999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ...|....++.+..|++.||+++|+++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l  425 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFL  425 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999863

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.38  E-value=3.3e-06  Score=67.48  Aligned_cols=106  Identities=11%  Similarity=-0.015  Sum_probs=73.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +.+|.++.+.+++.....++..++.++.+++.||++++........... +............ .+.+....++.|++.+
T Consensus       236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~  314 (394)
T PRK11652        236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMN-VWTLLVPAALFFFGAG  314 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Confidence            4478888888998888888999999999999999984333322222221 1111111111111 5566777888999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...+....+..|.+| +++++..++.+..
T Consensus       315 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  342 (394)
T PRK11652        315 MLFPLATSGAMEPFP-YLAGTAGALLGGL  342 (394)
T ss_pred             HHHHHHHHHHHhhcc-ccchHHHHHHHHH
Confidence            889999999999886 5789888877643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.38  E-value=2.2e-06  Score=70.45  Aligned_cols=104  Identities=13%  Similarity=0.008  Sum_probs=80.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh----hhCC-chhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE----RYGG-KYVLGFGLLVSTLATLATPLAARSF---GAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~  151 (189)
                      +.+|+++..+|.+..+.-+.-++..|+.|.++|    |+|| |+.++.+.+..+++..++...++.+   .++++++..+
T Consensus        35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~  114 (473)
T PRK10429         35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI  114 (473)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            778999999999999999999999999999999    6698 5666677777777655554333211   1445566667


Q ss_pred             HHhhccccchhHHHHHHHhhc-CccchhhHHHH
Q psy3312         152 IVGLGQGPAYPSMNVILAQWV-PKTERGRMGAL  183 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~  183 (189)
                      +.+++.........++.+|.. +++||.+..++
T Consensus       115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~  147 (473)
T PRK10429        115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPY  147 (473)
T ss_pred             HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHH
Confidence            777777777778888999998 58899987776

>KOG4686|consensus

Probab=98.37  E-value=5e-06  Score=63.35  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             ceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH-HHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312          79 HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFG-LLVSTLATLATPLAARSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  157 (189)
                      ++++|+++..++.+.+......++.+++.|.++||+|++...+.+ ++...++.....+..-     -=.+...+.|+..
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~l-----sPy~~m~~lGLsy  366 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFL-----SPYTSMTFLGLSY  366 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhc-----cHHHHHHHHhhhH
Confidence            388999999999999999999999999999999999999766654 4444444454444322     2245566777776


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ...-......++...|.++.|++.|..++-
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsI  396 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSI  396 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence            655555667888899999999999887653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.35  E-value=4.9e-06  Score=67.62  Aligned_cols=93  Identities=25%  Similarity=0.252  Sum_probs=78.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ..+|.+.....+.......+.+++.+++.++.+|+|+|+++..+.++..++..+..+.+... .+.+++..++.+++.+.
T Consensus       265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~-~~l~~~~~~i~~~g~~~  343 (467)
T COG2211         265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGS-VVLIVVALIIAGVGTGI  343 (467)
T ss_pred             EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHhhc
Confidence            34455566666777788888888899999999999999999999999999999988887333 77888888999999999


Q ss_pred             chhHHHHHHHhhcC
Q psy3312         160 AYPSMNVILAQWVP  173 (189)
Q Consensus       160 ~~~~~~~~~~~~~~  173 (189)
                      ..+...++++|...
T Consensus       344 ~~~l~wam~~d~vD  357 (467)
T COG2211         344 ANPLPWAMVADTVD  357 (467)
T ss_pred             cccccHHHhcchhh
Confidence            99988998888764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.33  E-value=1e-05  Score=64.70  Aligned_cols=132  Identities=9%  Similarity=-0.103  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHH--HHHHHHHHHhhh
Q psy3312          28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLIL--SSFFWGYVLNHI  105 (189)
Q Consensus        28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  105 (189)
                      ..++..++.+........+..|.+.                           ++.|.+.++.|++.  +...+...+..+
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l---------------------------~~~g~~~~~iGl~~~~~l~~~~~~l~~p   56 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLL---------------------------REDGAPLTALAFLPLVGLPWVVKFLWAP   56 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777777778888887                           78899999999973  566777777888


Q ss_pred             hh-hhhhhhhCCchhHHHHHHHH-HHHHHHHH-HHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312         106 PG-ALIAERYGGKYVLGFGLLVS-TLATLATP-LAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA  182 (189)
Q Consensus       106 ~~-g~l~dr~g~r~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  182 (189)
                      +. ++..||+||||.+++.+.+. .+...... +........+++...++.++..+...+..-.+..|..++++++...+
T Consensus        57 ~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~  136 (390)
T TIGR02718        57 LVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNA  136 (390)
T ss_pred             HHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHH
Confidence            88 55799999999875555332 21122122 11111112233444455556666666777778888888888877655


Q ss_pred             HHhh
Q psy3312         183 LVFA  186 (189)
Q Consensus       183 ~~~~  186 (189)
                      ....
T Consensus       137 ~~~~  140 (390)
T TIGR02718       137 VQIA  140 (390)
T ss_pred             HHHH
Confidence            5443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.33  E-value=4.5e-06  Score=51.24  Aligned_cols=47  Identities=15%  Similarity=0.178  Sum_probs=42.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLV  126 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~  126 (189)
                      ++.|+++.+.|.+.++..+...++.+++|.++||+++++.+.....+
T Consensus        28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            67899999999999999999999999999999999998877665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.28  E-value=2.6e-05  Score=54.49  Aligned_cols=90  Identities=13%  Similarity=0.269  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhh
Q psy3312          92 ILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQW  171 (189)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~  171 (189)
                      -.++......++.++.+.+.+++|.|+.++++.+.+.+..... +-++   .+.++.+-++.|++.+..+.....++.+.
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            3456667788888999999999999999999999988766543 3344   56788999999999999999999999999


Q ss_pred             cCccchhhHHHHHh
Q psy3312         172 VPKTERGRMGALVF  185 (189)
Q Consensus       172 ~~~~~r~~~~~~~~  185 (189)
                      ..++.|++..+++-
T Consensus       118 s~~~~~~~~~~ifw  131 (156)
T PF05978_consen  118 STEETIGRNTGIFW  131 (156)
T ss_pred             CCHHHHhhHHHHHH
Confidence            99999999888754

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.26  E-value=2.8e-05  Score=64.02  Aligned_cols=99  Identities=17%  Similarity=0.056  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCC-----chhH--HHHHHHHHHHHHHHHHHhh------chhhHHHHHHHHHHhh
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGG-----KYVL--GFGLLVSTLATLATPLAAR------SFGAVGILCARFIVGL  155 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----r~~l--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~  155 (189)
                      .+++.+...+..++.+++..++..|.+|     +...  .+|+++.+++.....+...      ..++++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6777888888888888776654444433     3333  6777777777766654210      1138889999999999


Q ss_pred             ccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         156 GQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      |+....|....++.+..|++.||+++|++..+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~  425 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLA  425 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998754

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.20  E-value=2.5e-05  Score=64.07  Aligned_cols=85  Identities=11%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHH
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVI  167 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~  167 (189)
                      ..+++...+.++.+++.+++++++||+|+|+++..+..+..+..++..+.+... .+.+++.-++.|++.+...+....+
T Consensus       264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA-SITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666778888899999999999999999887755554444333333333221 2233444566677776666666677


Q ss_pred             HHhhcC
Q psy3312         168 LAQWVP  173 (189)
Q Consensus       168 ~~~~~~  173 (189)
                      ++|..+
T Consensus       343 ~ad~~d  348 (460)
T PRK11462        343 MSDTVD  348 (460)
T ss_pred             HHHhHh
Confidence            777665

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.18  E-value=4.8e-05  Score=62.94  Aligned_cols=99  Identities=17%  Similarity=0.073  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchh-------HHHHHHHHHHHHHHHH-----HHhh--chhhHHHHHHHHHHh
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYV-------LGFGLLVSTLATLATP-----LAAR--SFGAVGILCARFIVG  154 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------l~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~r~l~G  154 (189)
                      ..++.+...+..++..++.+++.||+++|+.       +.+|+++.+++.+...     +...  ..+.++++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3455566666777888899999999999873       6677777666654321     2111  113677788899999


Q ss_pred             hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +|++...+....++.+..|++.++.++|+++..
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~  423 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLT  423 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753

>TIGR00788 fbt folate/biopterin transporter

Probab=98.17  E-value=8.9e-06  Score=66.87  Aligned_cols=94  Identities=10%  Similarity=0.130  Sum_probs=70.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC-----CchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG-----GKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIV  153 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~  153 (189)
                      +++|++.++.+...+...+...+-.+ +|.++||++     ||+.++++.++.. +.....+..++  ......+..++.
T Consensus        54 ~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~  130 (468)
T TIGR00788        54 DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVS--SAKVAAAFIFLA  130 (468)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHH
Confidence            78999999999999999999888555 999999997     6777777776653 33232332222  133444578888


Q ss_pred             hhccccchhHHHHHHHhhcCccch
Q psy3312         154 GLGQGPAYPSMNVILAQWVPKTER  177 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~~~~r  177 (189)
                      +++.+....+.-++..|..+ +++
T Consensus       131 ~~~~a~~dv~~da~~~e~~~-~~~  153 (468)
T TIGR00788       131 ALAKALYDVLVDSLYSERIR-ESP  153 (468)
T ss_pred             HHHHHHHHHhHHHHHhhhhh-cCC
Confidence            99988888999999999997 444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762|consensus

Probab=98.14  E-value=9.6e-06  Score=66.44  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ++.+-.+...|.....-..+-++.-++.+++..|+|+-+++.+++.+.++-.+..++..+   .|..+..-+++|+..+.
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n---~W~vLPieilqgit~al  475 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN---PWMVLPIEILQGITHAL  475 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC---chheeeHHHHHHHHHHH
Confidence            456666677777777777888889999999999999999999999999999898888888   99999999999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .+.++..+++...||+.|+++.++...
T Consensus       476 iWaa~~sY~s~vaPp~l~at~Q~l~~g  502 (618)
T KOG3762|consen  476 IWAAIISYASHVAPPGLRATAQGLLQG  502 (618)
T ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence            999999999999999999999998754

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.14  E-value=0.00011  Score=58.56  Aligned_cols=108  Identities=18%  Similarity=0.122  Sum_probs=92.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh-hhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE-RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +.+|++..+...+......|..++-...|++.. |.++++....++....++..+..++...++.+.+...-++.|++.|
T Consensus       237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G  316 (403)
T PF03209_consen  237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG  316 (403)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence            779999999999999999999999999998888 6677888888888888877766665544447888999999999999


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .......+.+.+...+++.|..+|.|...
T Consensus       317 ~f~vgals~mM~lt~~~~aG~~mG~WGaa  345 (403)
T PF03209_consen  317 LFTVGALSLMMDLTSAGRAGLFMGAWGAA  345 (403)
T ss_pred             HHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence            99899999999999999999999988654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254|consensus

Probab=98.14  E-value=1.8e-05  Score=65.76  Aligned_cols=105  Identities=17%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh----------h-HHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG----------A-VGILC  148 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~  148 (189)
                      +..+.+... .+...+..+...++..+...+.||+|||+.++.+.+...++.++.+.......          . .....
T Consensus       323 ~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (513)
T KOG0254|consen  323 KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL  401 (513)
T ss_pred             HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence            445544332 44455666777788888899999999999999999999999887776543210          1 11122


Q ss_pred             HHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         149 ARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       149 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ..++..+..+ ..+....+.+|.+|.+.|+++.++..+
T Consensus       402 ~~~v~~f~~g-~g~v~w~~~sEifp~~~r~~~~s~~~~  438 (513)
T KOG0254|consen  402 CLFIFSFAIG-WGPVPWVIVSEIFPLRLRSKGASLAVA  438 (513)
T ss_pred             HHHHHHHhcc-cccchhhhhhccCcHhHHhhhHHHHHH
Confidence            2222223222 234455688999999999999888654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.05  E-value=8.2e-06  Score=66.13  Aligned_cols=107  Identities=13%  Similarity=0.105  Sum_probs=84.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh----hhCCch-hHHHHHHHHHHHHHHHHHH-h-hch---hhHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE----RYGGKY-VLGFGLLVSTLATLATPLA-A-RSF---GAVGILCA  149 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~-~l~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~  149 (189)
                      +.+++++...+.+..+..+..++..|+.|.++|    |+|||| .++++.+..+++..++... + +.+   ...++.+.
T Consensus        30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~  109 (428)
T PF13347_consen   30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF  109 (428)
T ss_pred             HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence            778999999999999999999999999999999    899765 5667778887777766655 3 111   13455777


Q ss_pred             HHHHhhccccchhHHHHHHHhhcC-ccchhhHHHHHhh
Q psy3312         150 RFIVGLGQGPAYPSMNVILAQWVP-KTERGRMGALVFA  186 (189)
Q Consensus       150 r~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~  186 (189)
                      .++..++.........++.+|..+ +++|.+..++-..
T Consensus       110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~  147 (428)
T PF13347_consen  110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMI  147 (428)
T ss_pred             HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHH
Confidence            777788888888888999999997 4789887776543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.02  E-value=0.00021  Score=56.90  Aligned_cols=115  Identities=22%  Similarity=0.319  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      ..++.++........+..++.+..                          +..|.+..+.....+.+..+.++|.++..+
T Consensus       241 gvl~~FlYVG~Eva~gsfl~~y~~--------------------------~~~g~~~~~aa~~~s~~~~~~~vGRFig~~  294 (422)
T COG0738         241 GVLAIFLYVGAEVAIGSFLVSYLE--------------------------ELLGLNEQQAAYYLSFFWVGFMVGRFIGSA  294 (422)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHH--------------------------hcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566666666666550                          337888899999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCc
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPK  174 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~  174 (189)
                      +..|+...|.+.+..+...+..+...+..+   .+. +...++.|+..+..+|...++..+..|.
T Consensus       295 lm~~~~~~k~Laf~a~~~ill~~~~~l~~g---~v~-~~~l~~ig~F~simfPTIfslal~~l~~  355 (422)
T COG0738         295 LMSRIKPEKYLAFYALIAILLLLAVALIGG---VVA-LYALFLIGLFNSIMFPTIFSLALKNLGE  355 (422)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHhcC---hHH-HHHHHHHHHHhHHHHHHHHHHHHhccCc
Confidence            999999999999888777777777777776   434 4555778999999999999999999884

>PRK09848 glucuronide transporter; Provisional

Probab=97.99  E-value=6.4e-05  Score=61.29  Aligned_cols=105  Identities=11%  Similarity=-0.005  Sum_probs=71.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh----CCchhH-HHHHHHHHHHHHHHHHHh-hc---hhhHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY----GGKYVL-GFGLLVSTLATLATPLAA-RS---FGAVGILCAR  150 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~l-~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~r  150 (189)
                      +.+|++..+.|.+..+..+..++..++.|+++||.    ||||.. ..+.+...+...+....+ ..   ...++..+..
T Consensus        37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (448)
T PRK09848         37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY  116 (448)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence            77899999999999999999999999999999996    766644 555444443333321111 11   1133445556


Q ss_pred             HHHhhccccchhHHHHHHHhhcC-ccchhhHHHHH
Q psy3312         151 FIVGLGQGPAYPSMNVILAQWVP-KTERGRMGALV  184 (189)
Q Consensus       151 ~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~  184 (189)
                      ++.+++.+...+...++..+... +++|.+..++-
T Consensus       117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r  151 (448)
T PRK09848        117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR  151 (448)
T ss_pred             HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHH
Confidence            67777777777666677676654 46788775543

>TIGR00788 fbt folate/biopterin transporter

Probab=97.90  E-value=1.2e-05  Score=66.03  Aligned_cols=108  Identities=16%  Similarity=0.058  Sum_probs=88.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hc------hhhHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RS------FGAVGILCARFI  152 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~r~l  152 (189)
                      ..+|+++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++........ ..      .+.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999999999999999999999999999999999999999888775543111 00      113345566778


Q ss_pred             HhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         153 VGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       153 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+++.+..+.....++++..|++.+|+..++..+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~  395 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI  395 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence            88888888888899999999999999999987654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.74  E-value=0.0013  Score=54.44  Aligned_cols=99  Identities=11%  Similarity=0.033  Sum_probs=76.6

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhCCc-h------hHHHHHHHHHHHHHHHHHHhh----c--hhhHHHHHHHHHHh
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIAERYGGK-Y------VLGFGLLVSTLATLATPLAAR----S--FGAVGILCARFIVG  154 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~------~l~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~r~l~G  154 (189)
                      ..+|.++...+..++..|+.+++-.|.++| +      =+.+|+++.+++.+++.+...    .  -+.++++...++++
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            467778888888888888888887776332 1      156777777777766644321    1  13677888999999


Q ss_pred             hccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      +|+-+..|...+++++..|++.|++.+|+++.
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l  420 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYML  420 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999865

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.73  E-value=6.3e-06  Score=68.76  Aligned_cols=108  Identities=20%  Similarity=0.225  Sum_probs=3.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-----------h---------
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-----------R---------  139 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~---------  139 (189)
                      ++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+..|.++.+++.+++++-+           .         
T Consensus        31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~  110 (539)
T PF03137_consen   31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS  110 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence            89999999999999999999999999999999999998999999999999988776421           0         


Q ss_pred             ---------------------------chhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         140 ---------------------------SFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       140 ---------------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                                                 ...++.++++.++.|+|....++...+++-|..+++.-+..+|+.++.
T Consensus       111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             -----------------------------------------SSS-------------------------------
T ss_pred             cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                       001356778999999999999999999999999999988888887654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11462 putative transporter; Provisional

Probab=97.67  E-value=0.00038  Score=57.15  Aligned_cols=108  Identities=12%  Similarity=-0.040  Sum_probs=81.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCch-hHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGKY-VLGFGLLVSTLATLATPLAARSF---GAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~  151 (189)
                      +..|+++..+|.+..+.-+--++.-|+.|.++||    +|||| .++++.+..++...++...++.+   ...++.+..+
T Consensus        38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~  117 (460)
T PRK11462         38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT  117 (460)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence            7789999999999999999999999999999995    68764 55566666666665554444321   1345666667


Q ss_pred             HHhhccccchhHHHHHHHhhcC-ccchhhHHHHHhhc
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVP-KTERGRMGALVFAG  187 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~  187 (189)
                      +..++.......-.++.+|..+ ++||.+..++...+
T Consensus       118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~  154 (460)
T PRK11462        118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVL  154 (460)
T ss_pred             HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            7777777777778888899887 68999988876543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.61  E-value=2.7e-07  Score=74.97  Aligned_cols=92  Identities=16%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH--H--Hhhch---hhHHHHHHHHHHhhccc-cchhHHHH
Q psy3312          95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP--L--AARSF---GAVGILCARFIVGLGQG-PAYPSMNV  166 (189)
Q Consensus        95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~--~~~~~---~~~~~~~~r~l~G~~~g-~~~~~~~~  166 (189)
                      ...+...++.++...+.||+|||++++.+.+..+++.+...  .  ..+..   +... ++.-.+...+.+ +..+....
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~  372 (451)
T PF00083_consen  294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS-IVFLALFFAFFSLGWGPLPWI  372 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ceeeeeccccccccccccccc
Confidence            34455566777778999999999999999888887776654  1  11110   0111 222222222222 23355567


Q ss_pred             HHHhhcCccchhhHHHHHhhc
Q psy3312         167 ILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       167 ~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +.+|.+|.+.|+++.++....
T Consensus       373 ~~~ElfPt~~R~~~~~~~~~~  393 (451)
T PF00083_consen  373 YTAELFPTKVRSTGIGLSYAV  393 (451)
T ss_pred             ccccccccccccccccccccc
Confidence            889999999999999887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.61  E-value=0.002  Score=53.19  Aligned_cols=89  Identities=17%  Similarity=-0.108  Sum_probs=66.0

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGF-GLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      ..++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+.++.+... +.++...+..++.-++.+.......+
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667788889999999999999999987765554 44455556666666532 22555566666666777778888999


Q ss_pred             HHHhhcCccch
Q psy3312         167 ILAQWVPKTER  177 (189)
Q Consensus       167 ~~~~~~~~~~r  177 (189)
                      ++.+..+++.+
T Consensus       150 ~LP~la~~~~~  160 (477)
T PF11700_consen  150 YLPDLARPEPR  160 (477)
T ss_pred             HhHhhcCCChh
Confidence            99999998888

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0008  Score=54.99  Aligned_cols=108  Identities=13%  Similarity=0.071  Sum_probs=88.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCc-hhHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGK-YVLGFGLLVSTLATLATPLAARS---FGAVGILCARF  151 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~  151 (189)
                      +..|+++..+|.+..+.-+.-++.-|+.|.+.||    +||+ +-++.+.+-.++...++-..++.   +...+.++...
T Consensus        41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~  120 (467)
T COG2211          41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM  120 (467)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence            7899999999999999999999999999999995    6764 56777778888877777777642   23677788889


Q ss_pred             HHhhccccchhHHHHHHHhhcC-ccchhhHHHHHhhc
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVP-KTERGRMGALVFAG  187 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~  187 (189)
                      +.+++.........++.+|.-+ ++||.+..++-+.+
T Consensus       121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~  157 (467)
T COG2211         121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF  157 (467)
T ss_pred             HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence            9999998888888888888875 58999888776543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.59  E-value=0.0004  Score=59.40  Aligned_cols=107  Identities=17%  Similarity=0.247  Sum_probs=82.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhc-----hhhHHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARS-----FGAVGILCARFIV  153 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~  153 (189)
                      +.+|++.+.+..+...+....-+..++.|+++|++ |+++.+..+.++..++..+.++....     ......+++..+.
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            56788888888888888888889999999999955 99999999999999988877764221     0023356777888


Q ss_pred             hhccccchhHHHHHHHhhcCccc---hhhHHHHHhh
Q psy3312         154 GLGQGPAYPSMNVILAQWVPKTE---RGRMGALVFA  186 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~  186 (189)
                      .+|.|+.-+...+...|.+++++   |..++.+++.
T Consensus        96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~  131 (654)
T TIGR00926        96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYF  131 (654)
T ss_pred             HhhccccccCchhhhHhhcCccchhHHHHHHHHHHH
Confidence            88999999999999999997654   4455555543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.55  E-value=0.00054  Score=55.25  Aligned_cols=44  Identities=18%  Similarity=0.034  Sum_probs=36.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFG  123 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~  123 (189)
                      ++.|++.++.|.+.++..+...+.+|+.|.++||+|.||-++..
T Consensus        36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen   36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            56899999999999999999999999999999999977755443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.54  E-value=0.00058  Score=54.56  Aligned_cols=106  Identities=18%  Similarity=0.147  Sum_probs=76.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC-----Cch-hHHHHHHHHHHHHHHHHHHh----h-------chh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG-----GKY-VLGFGLLVSTLATLATPLAA----R-------SFG  142 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~-~l~~~~~~~~~~~~~~~~~~----~-------~~~  142 (189)
                      .|++++....+.+.+...+. ....+.+|..+|+.+     ||. -+..|.++.+.+..+.+++.    +       ...
T Consensus         8 vEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            67888877777777766653 446999999999998     764 45556666665555444332    1       010


Q ss_pred             h--HHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         143 A--VGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       143 ~--~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .  ........+.|+|.+.......++++|..|+++|++..++...
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~  132 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWV  132 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHH
Confidence            1  2334566778999998899999999999999999999998764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.50  E-value=0.0018  Score=54.72  Aligned_cols=98  Identities=20%  Similarity=0.178  Sum_probs=70.3

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      ..++....+.++..++..+.|.+..+.+| |..++++.++..++..+++...... ....+..-++.|++.|........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n-~~~~i~~~~l~g~giG~~~~~~~~  428 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDN-KNAAIAFLVLAGFGIGGILVPAIV  428 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCC-cchHHHHHHHHHHhHHHHHHHHHH
Confidence            56788788888999999999999998887 4455566666655444444332211 334457778889998888777777


Q ss_pred             HHHhhcCccchhhHHHHHhh
Q psy3312         167 ILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       167 ~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ...-..|+++-+.+.++..+
T Consensus       429 ~~ql~~p~~~ig~a~gL~~s  448 (599)
T PF06609_consen  429 IAQLIVPDEDIGTATGLTGS  448 (599)
T ss_pred             eeEeeeCchHHHHHHHHHHH
Confidence            77777888888888877543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.49  E-value=0.0028  Score=51.24  Aligned_cols=105  Identities=7%  Similarity=-0.017  Sum_probs=60.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~  157 (189)
                      +.+|.++.+.++.......+..++..+.+.+.++..+++.+.....+..++..+.....  ..+.++..++..++.++|.
T Consensus       247 ~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~  326 (413)
T PRK15403        247 DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGI  326 (413)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence            56788999999988778888888888888876555444443332222222222222110  1111334567777888888


Q ss_pred             ccchhHHHHHHHhhcC-ccchhhHHHHHhh
Q psy3312         158 GPAYPSMNVILAQWVP-KTERGRMGALVFA  186 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~  186 (189)
                      +...+......  +.+ ...+|++.++...
T Consensus       327 ~~~~p~~~~~a--l~~~~~~~G~a~a~~~~  354 (413)
T PRK15403        327 GLIFPTLFRFT--LFSNNLPKGTVSASLNM  354 (413)
T ss_pred             HHHhHHHHHHH--hccCCCCCcHHHHHHHH
Confidence            87777666432  222 2246777665543

>KOG2533|consensus

Probab=97.49  E-value=0.00041  Score=57.36  Aligned_cols=124  Identities=11%  Similarity=0.042  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCccccccccccccee-eeccccchhHHHHHHHHHHHHhhhh
Q psy3312          28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYE-FDWDERTQGLILSSFFWGYVLNHIP  106 (189)
Q Consensus        28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  106 (189)
                      ....++.+........+....|.+.                           ++ .|++..+.+.+...+.++.+++.++
T Consensus       276 w~~~l~~~~~~lv~~~~~~~lpl~l---------------------------~~~~~~s~~~a~~ls~~~~~~g~v~~i~  328 (495)
T KOG2533|consen  276 WPFSLCYFFLKLVNYGFSYWLPLYL---------------------------KSNGGYSELQANLLSTPYDVGGIVGLIL  328 (495)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHH---------------------------HcCCCcChHHhccccchHHhhhHHHHHH
Confidence            3455666666666666777778777                           34 5688889999999999999999999


Q ss_pred             hhhhhhh----hCCchhHHHHHHHHHHHH-HHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312         107 GALIAER----YGGKYVLGFGLLVSTLAT-LATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG  181 (189)
Q Consensus       107 ~g~l~dr----~g~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  181 (189)
                      +|.++||    ..+|........+..+.. ........   .+......+..+.+.....+......++...++.|....
T Consensus       329 ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~  405 (495)
T KOG2533|consen  329 AGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAV---LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT  405 (495)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence            9999999    666666655555544433 33333322   222222223333444455566666666666665554433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.41  E-value=0.0048  Score=50.95  Aligned_cols=97  Identities=13%  Similarity=0.051  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHHhhchh------------------hHHHHHHHH
Q psy3312          91 LILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLAARSFG------------------AVGILCARF  151 (189)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~r~  151 (189)
                      +....+.+...+.+++..++++|+|+ |++..++.++.+++.+...+..+..+                  .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            33344555556777788899999995 67768887887777776665543110                  256677888


Q ss_pred             HHhhccccchhHHHHHHHhhcCcc--chhhHHHHHhhc
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVPKT--ERGRMGALVFAG  187 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~  187 (189)
                      +.|+..+..+..-++++++..+++  ..|..+|+.+.+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~  426 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA  426 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence            899999999999999999999854  458999998765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3764|consensus

Probab=97.41  E-value=0.00016  Score=57.49  Aligned_cols=92  Identities=18%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC--CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG--GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  157 (189)
                      +.+..+..+.|+..--..+.+.++..+.|.++||++  |-.....++++........+++++   +..+++-++..|++.
T Consensus       299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~---~~~L~vp~~~l~~~i  375 (464)
T KOG3764|consen  299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS---IAQLWVPNFGLGFGI  375 (464)
T ss_pred             HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh---HHHHhhhhHHHHHHH
Confidence            445545557788777888899999999999999999  655666677777777777788888   778888888888888


Q ss_pred             ccchhHHHHHHHhhcCc
Q psy3312         158 GPAYPSMNVILAQWVPK  174 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~  174 (189)
                      +.........+.+...+
T Consensus       376 ~~~dasl~P~l~~lvd~  392 (464)
T KOG3764|consen  376 GLADASLIPTLGYLVDP  392 (464)
T ss_pred             HHHHHHHhhhhHHhcch
Confidence            77777766666666644

>KOG2816|consensus

Probab=97.27  E-value=0.0037  Score=51.44  Aligned_cols=84  Identities=19%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc--cccchhHHHHHHHhhc
Q psy3312          95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG--QGPAYPSMNVILAQWV  172 (189)
Q Consensus        95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~g~~~~~~~~~~~~~~  172 (189)
                      ...+...+.++..|.++||+|||..+....+...+..+...+..    +|.++    +.++.  .+..+....+++++..
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----~~~~~----~~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----YWFFL----LLGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----HHHhh----hcccccchhhhhhhhhhheeecc
Confidence            44677888999999999999999999999888887777665543    33333    44443  3455778888999999


Q ss_pred             CccchhhHHHHHhh
Q psy3312         173 PKTERGRMGALVFA  186 (189)
Q Consensus       173 ~~~~r~~~~~~~~~  186 (189)
                      ..++|....|+.+.
T Consensus       142 ~~~~R~~~~gll~~  155 (463)
T KOG2816|consen  142 SEEERSSSIGLLSG  155 (463)
T ss_pred             chhHHHHHHHHHHH
Confidence            99999999988765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.18  E-value=0.0019  Score=51.91  Aligned_cols=99  Identities=14%  Similarity=0.020  Sum_probs=73.8

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH-HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHH
Q psy3312          87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG-FGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMN  165 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  165 (189)
                      +..+...++..+..++..|+.|.++|+.|+||..+ ....+..++..+..++++...++..++..++..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            34566778888889999999999999999776544 44555555566667776633256667777888888888888899


Q ss_pred             HHHHhhcCccchhhHHHHHh
Q psy3312         166 VILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       166 ~~~~~~~~~~~r~~~~~~~~  185 (189)
                      +++.+..++++-++..++..
T Consensus       138 s~L~~~~~k~~~~riS~lg~  157 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGW  157 (438)
T ss_pred             hHhhhhcCccccCccccccc
Confidence            99999998877666655443

>KOG2816|consensus

Probab=97.15  E-value=0.0034  Score=51.64  Aligned_cols=103  Identities=20%  Similarity=0.345  Sum_probs=87.8

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhh-hhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGA-LIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      ..++++..+.+.+.+.......+++.+.. .+...+|-|+++..|+..-.+...+.+++++   .|.+.....+.++ .+
T Consensus       270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~~~-~~  345 (463)
T KOG2816|consen  270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVVAL-AG  345 (463)
T ss_pred             eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh-hc
Confidence            67899999999888888877777777766 7888889999999999999999999999988   7787777766655 45


Q ss_pred             cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      ...++..++++.+.+++++|+..++...
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~  373 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISG  373 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHH
Confidence            6789999999999999999999988754

>KOG0637|consensus

Probab=97.06  E-value=0.0027  Score=51.52  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312          24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN  103 (189)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (189)
                      ..++.+..+.....+......++..|+.                            .+.|++....+.+-...-+...+-
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl----------------------------~~lGvphk~~S~iw~~gPi~G~~v   83 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYL----------------------------QSLGVPHKWSSIIWLCGPLSGLLV   83 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHH----------------------------HHcCCCccccccccccccccccee
Confidence            3444445555555555555566666666                            478888877777777777778889


Q ss_pred             hhhhhhhhh----hhCCchh-HHHHHHHHHHHHHHHHHHhhch--------------hhHHHHHHHHHHhhccccchhHH
Q psy3312         104 HIPGALIAE----RYGGKYV-LGFGLLVSTLATLATPLAARSF--------------GAVGILCARFIVGLGQGPAYPSM  164 (189)
Q Consensus       104 ~~~~g~l~d----r~g~r~~-l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~r~l~G~~~g~~~~~~  164 (189)
                      +|+.|..+|    ||||||. +..+.++.+++.++..++.+.+              ....++++..+.=+..-..+..+
T Consensus        84 QP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~  163 (498)
T KOG0637|consen   84 QPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC  163 (498)
T ss_pred             cccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH
Confidence            999999999    5788765 4455666667777777766532              01223334444445555677888


Q ss_pred             HHHHHhhcCccchhh-HHHHH
Q psy3312         165 NVILAQWVPKTERGR-MGALV  184 (189)
Q Consensus       165 ~~~~~~~~~~~~r~~-~~~~~  184 (189)
                      -+++.|.+..+++.+ +.+++
T Consensus       164 ra~L~Dl~~~d~~~~~Ans~f  184 (498)
T KOG0637|consen  164 RALLADLARGDAKKTRANSVF  184 (498)
T ss_pred             HHHHHHhccChhhhhccchhH
Confidence            999999998776666 55554

>KOG2615|consensus

Probab=96.92  E-value=0.014  Score=46.64  Aligned_cols=105  Identities=21%  Similarity=0.256  Sum_probs=85.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC--CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG--GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  157 (189)
                      +.+|.++.+.|-+.+...++..+.+....+..||..  -+..+..++.+..-..++...++.   ...+.++-.+-.+..
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~---~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART---PVVLYLGSTLKSFST  366 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHHHH
Confidence            789999999999999999999999999999999887  666677776666655666666666   556677777777777


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...+....++....|.++||...|+..+.
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl  396 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSL  396 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence            777788888999999999999999998653

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.92  E-value=0.034  Score=45.73  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhCCc-------hhHHHHHHHHHHHHHHHHHH-------hhchhhHHHHHHHHHH
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIAERYGGK-------YVLGFGLLVSTLATLATPLA-------ARSFGAVGILCARFIV  153 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~l~  153 (189)
                      ...+.++...+..++..++..++--+.+++       .-+.+++++.+.+.++....       .+..+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            356778888888888888888888885544       12445566665555555444       1222478889999999


Q ss_pred             hhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ++|+=+..|....++.+..|++-.+.+++.+.+.
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt  438 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT  438 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>KOG2532|consensus

Probab=96.89  E-value=0.021  Score=47.18  Aligned_cols=60  Identities=10%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc---------hhHHHHHHHHHHHHHHHHHHhh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK---------YVLGFGLLVSTLATLATPLAAR  139 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~~~~  139 (189)
                      +.+|++..+.|++.++..+...+..+++|.++||.-+|         ..=.++....++..+..++.++
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~  355 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD  355 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence            78999999999999999999999999999999988652         2233445555555555566554

>KOG0255|consensus

Probab=96.84  E-value=0.042  Score=45.82  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=68.6

Q ss_pred             HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch
Q psy3312          98 WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER  177 (189)
Q Consensus        98 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r  177 (189)
                      .....+....+.+.|++|||..+..+.++..++.++..+.......+...+...+..++.+..+.....+.+|.+|...|
T Consensus       361 ~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  361 LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            34555556668999999999999999999999999888887643112345555555566666777779999999999999


Q ss_pred             hhHHHHHhh
Q psy3312         178 GRMGALVFA  186 (189)
Q Consensus       178 ~~~~~~~~~  186 (189)
                      ..+.+....
T Consensus       441 ~~~~~~~~~  449 (521)
T KOG0255|consen  441 NTAVGAISA  449 (521)
T ss_pred             HHHHHHHHH
Confidence            999887654

>KOG4332|consensus

Probab=96.82  E-value=0.00025  Score=53.88  Aligned_cols=89  Identities=12%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      ..+++...+++.+.....-..++...+.|.++||-|||+.-..-++.+.++++ ...+++   +-.++++|.+.|+..+.
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq---YkVLmVGR~LGGiaTsL  140 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ---YKVLMVGRVLGGIATSL  140 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc---eEEEeehhhhhhHHHHH
Confidence            55777788888887777777788888899999999999976666666655554 344555   77899999999999888


Q ss_pred             chhHHHH-HHHhhc
Q psy3312         160 AYPSMNV-ILAQWV  172 (189)
Q Consensus       160 ~~~~~~~-~~~~~~  172 (189)
                      .+.+--. +++|.-
T Consensus       141 LFSaFEsWliaEHn  154 (454)
T KOG4332|consen  141 LFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHhh
Confidence            8776665 455554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.80  E-value=0.033  Score=45.49  Aligned_cols=107  Identities=15%  Similarity=0.042  Sum_probs=72.9

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH---HHhhc----hhhHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP---LAARS----FGAVGILCARFI  152 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~r~l  152 (189)
                      ..-|+++...+..-+...+..+.+++...++.+|+|..|.=.++......+..+..   +.+..    .+...++.+-++
T Consensus       286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~  365 (432)
T PF06963_consen  286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL  365 (432)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence            34489999999999999999999999999999999998876666654443333222   11111    012233333333


Q ss_pred             HhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         153 VGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       153 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .=+|.=+..-...-++.|..|+++||...|+-++
T Consensus       366 SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~s  399 (432)
T PF06963_consen  366 SRIGLWSFDLAVTQIMQENVPESERGAVSGVQNS  399 (432)
T ss_pred             HHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHH
Confidence            3333334445667789999999999999887654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=96.63  E-value=0.012  Score=49.88  Aligned_cols=91  Identities=10%  Similarity=0.074  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhh---hhC------CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchh
Q psy3312          92 ILSSFFWGYVLNHIPGALIAE---RYG------GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYP  162 (189)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~l~d---r~g------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  162 (189)
                      +.+...++..+|.+..|.+..   |..      |--.+.+..+ ..++.+++.+...   ...+.+.-++.|++.|..++
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p---~~~L~~~~~lvg~~~G~~~~  471 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP---KAALPLPYFIAAFANGFMAA  471 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC---ccHhHHHHHHHHHHhhHhHH
Confidence            567777788888888887772   111      1122333333 4444554444432   24788999999999999999


Q ss_pred             HHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         163 SMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       163 ~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ....+++|+|. |+-|+-..+...+
T Consensus       472 ~~~~i~selFg-k~~g~~yN~~~~a  495 (591)
T PTZ00207        472 TIALVTRTIFA-KDPAKHYNFCFLG  495 (591)
T ss_pred             HHHHHHHHHhc-cchHHHhhHHhHH
Confidence            99999999999 8888777665543

>KOG0252|consensus

Probab=96.63  E-value=0.0013  Score=53.36  Aligned_cols=87  Identities=15%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-h---h-HHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312          98 WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-G---A-VGILCARFIVGLGQGPAYPSMNVILAQWV  172 (189)
Q Consensus        98 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  172 (189)
                      .+++.+..+...+.|+.|||++.+.+.++..+..+..+...++. .   + ....+..++.-+|   .......+-+|.|
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F  435 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF  435 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence            34455777888999999999999999999998888777665521 1   1 1222233333343   3344556779999


Q ss_pred             CccchhhHHHHHhhc
Q psy3312         173 PKTERGRMGALVFAG  187 (189)
Q Consensus       173 ~~~~r~~~~~~~~~~  187 (189)
                      |.+.|++..|+.-+.
T Consensus       436 ParvR~t~hGIsAA~  450 (538)
T KOG0252|consen  436 PARVRSTCHGISAAS  450 (538)
T ss_pred             hHHHhhhhhhHHHHh
Confidence            999999999987543

>KOG3626|consensus

Probab=96.60  E-value=0.0031  Score=54.16  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=93.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-----------h---------
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-----------R---------  139 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~---------  139 (189)
                      +.++++.++.|++.+.+=++..+...+..+...|.-|.+.+..|+++.+++.+++++-+           .         
T Consensus       125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~  204 (735)
T KOG3626|consen  125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS  204 (735)
T ss_pred             hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence            88999999999999999999999999999999999999999999999999998887531           0         


Q ss_pred             --------------------------ch---hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         140 --------------------------SF---GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       140 --------------------------~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                                                .+   .+..++++.++.|+|....++...+++-|...+++-...+|+.+..
T Consensus       205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence                                      00   1235678889999999999999999999999998888888887653

>KOG3762|consensus

Probab=96.56  E-value=0.0009  Score=55.26  Aligned_cols=60  Identities=18%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc-hhHHHHHHHHHHHHHHHHHHhh
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK-YVLGFGLLVSTLATLATPLAAR  139 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~l~~~~~~~~~~~~~~~~~~~  139 (189)
                      +.+|+++.+.+.+.+.--+..+++.|++|.++||+-+| +.++.+.+....+.++..+++.
T Consensus        39 kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P   99 (618)
T KOG3762|consen   39 KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPP   99 (618)
T ss_pred             HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccC
Confidence            78999999999999999999999999999999999765 5566667777777777666553

>KOG3098|consensus

Probab=96.48  E-value=0.0078  Score=49.30  Aligned_cols=88  Identities=11%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312          93 LSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV  172 (189)
Q Consensus        93 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  172 (189)
                      .++.+..+.+..++.+.+.|+.|.|..+.++...+......+-+..    -+.+++.-.+.|+|.+..+.....+++|..
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N----~y~~yfssallG~Gaallw~GqG~ylt~~s  131 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN----SYYLYFSSALLGFGAALLWTGQGGYLTSNS  131 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc----hHHHHHHHHHhhhhHHheecccceehhhcC
Confidence            6777888999999999999999999999999999988887665544    457788999999999999999999999999


Q ss_pred             CccchhhHHHHH
Q psy3312         173 PKTERGRMGALV  184 (189)
Q Consensus       173 ~~~~r~~~~~~~  184 (189)
                      +++.+.+..++.
T Consensus       132 t~~tie~Nisi~  143 (461)
T KOG3098|consen  132 TRETIERNISIF  143 (461)
T ss_pred             ChhhHHHHHHHH
Confidence            998888877764

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.37  E-value=0.044  Score=44.33  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             eeeccccchh-HHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          81 EFDWDERTQG-LILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.|++..+.. -+.-+....+....++...+.|..+.|++++++.+...+...++.+.++   .+.+-+..++.|++.+.
T Consensus        34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~~~a~  110 (412)
T PF01770_consen   34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGLATAA  110 (412)
T ss_pred             ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHHHH
Confidence            3677776654 3445666778888999999999999999999999998888888888877   88888999999998765


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                       ..+-.+++=...++++-.++.+...
T Consensus       111 -evay~sYiys~v~~~~yq~vts~~r  135 (412)
T PF01770_consen  111 -EVAYYSYIYSVVDKEHYQKVTSYTR  135 (412)
T ss_pred             -HHHHHHHheeecCHHHHHHHHHHHH
Confidence             4556677777777777666665543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.24  E-value=0.016  Score=49.65  Aligned_cols=53  Identities=17%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             eeeeccccchhHHHHHHHH-HHHHhhhhhhhhhhhhCC--chhHHHHHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFW-GYVLNHIPGALIAERYGG--KYVLGFGLLVSTLATL  132 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~--r~~l~~~~~~~~~~~~  132 (189)
                      +.+|+++.+++++.+...+ +.+++.++.|++.||+++  |+.+.+++++..++.+
T Consensus       359 ~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~  414 (633)
T TIGR00805       359 NQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL  414 (633)
T ss_pred             HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence            6799999999999887765 678999999999999984  4666666665555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2563|consensus

Probab=96.10  E-value=0.011  Score=48.11  Aligned_cols=97  Identities=14%  Similarity=0.040  Sum_probs=64.6

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHhhccc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLA-ARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      .-|.+....|+......++.++++...|.+.||... |.++.+......++.+..... ......+.+...-.+.|++..
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~  374 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT  374 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence            344455788999999999999999999999999965 556666666655554322222 222223455556667777777


Q ss_pred             cchhHHHHHHHhh-cCccch
Q psy3312         159 PAYPSMNVILAQW-VPKTER  177 (189)
Q Consensus       159 ~~~~~~~~~~~~~-~~~~~r  177 (189)
                      +..|...-+-.|. +|..|+
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~  394 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEG  394 (480)
T ss_pred             CCCCcceeeeeeeccccCCc
Confidence            7788777666666 344443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.72  E-value=0.3  Score=39.51  Aligned_cols=96  Identities=15%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHH-----HHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVS-----TLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      .+.++.+....+.+|-.++.--...+  |+  |++.+...+-.     .+...+.-+.++   .|.+++.-+..|+..|.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhhhH
Confidence            34567777788887766654322221  22  33333332222     122223333444   77777888899999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+......+.|-.|+++|...+|....+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvs  379 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVS  379 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.56  E-value=0.088  Score=43.07  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-----CCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-----GGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIV  153 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~  153 (189)
                      +++|+++++...+.+...+.. ...++.|.++|-+     .||+-++++.++.+++....+..+.. .+.....+..++.
T Consensus        18 ~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la   96 (433)
T PF03092_consen   18 DDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA   96 (433)
T ss_pred             HHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence            889999998887766666544 4578889999977     35566677777776656555554431 1244555666777


Q ss_pred             hhccccchhHHHHHHHhhcC--ccchhhHHHHHh
Q psy3312         154 GLGQGPAYPSMNVILAQWVP--KTERGRMGALVF  185 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~  185 (189)
                      .+|........-+++.|...  |++|+...+...
T Consensus        97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~  130 (433)
T PF03092_consen   97 SFGYAFADVAADALVVELARREPESRGDLQSFVW  130 (433)
T ss_pred             HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHH
Confidence            78888888888889999873  334666655543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.85  E-value=0.88  Score=37.79  Aligned_cols=102  Identities=7%  Similarity=-0.147  Sum_probs=66.3

Q ss_pred             cchhHHHHHHHHHHHHh-hhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh----hc-h-------------------
Q psy3312          87 RTQGLILSSFFWGYVLN-HIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA----RS-F-------------------  141 (189)
Q Consensus        87 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~-~-------------------  141 (189)
                      ....++.+...+...+. .++.+++++|++|++++-.....+.....++++.-    +. +                   
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            46778877776666555 89999999999999988877666666665555441    10 0                   


Q ss_pred             ----hhHHHHHHHHHHhhccccchh-HHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312         142 ----GAVGILCARFIVGLGQGPAYP-SMNVILAQWVPKTERGRMGALVFAGS  188 (189)
Q Consensus       142 ----~~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~  188 (189)
                          ..|...+..+..-+-.....+ .-..+..|.+.+++-.|..++...++
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ga  174 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGA  174 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                012222222223332233333 66778999999998889888887764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1330|consensus

Probab=94.28  E-value=0.13  Score=42.17  Aligned_cols=101  Identities=17%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc----hhHHHH---HHHH----HHHHHHHHHHhhchhhHHHHHHHHH
Q psy3312          84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGK----YVLGFG---LLVS----TLATLATPLAARSFGAVGILCARFI  152 (189)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~l~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~r~l  152 (189)
                      .+..+..++..+...+..+|.++.|.++||+-|+    ......   +.+.    ....++.+...+ + ...+....++
T Consensus       280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~-s~~~~~il~~  357 (493)
T KOG1330|consen  280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-S-SMIFGLILFL  357 (493)
T ss_pred             CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-H-HHHHHHHHHH
Confidence            3444455566788889999999999999994321    112211   1111    111111111122 1 2222333344


Q ss_pred             Hhhccc-cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         153 VGLGQG-PAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       153 ~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .|.... ..++....+..|..||++|..+.++-..
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~  392 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTV  392 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence            454333 3355666688999999999999887653

>KOG3098|consensus

Probab=94.08  E-value=1.6  Score=36.08  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhhhhhhhh---hhhCCchhHHHHHHHHHHHHHHHHHHhhch---------------hhHHHHHHHHHHhhc
Q psy3312          95 SFFWGYVLNHIPGALIA---ERYGGKYVLGFGLLVSTLATLATPLAARSF---------------GAVGILCARFIVGLG  156 (189)
Q Consensus        95 ~~~~~~~~~~~~~g~l~---dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~r~l~G~~  156 (189)
                      ...++..++..+.+.+.   +++||++++.++.++..+..++.-+.....               .....++.-++.|++
T Consensus       287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~  366 (461)
T KOG3098|consen  287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG  366 (461)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence            34455555556666666   467899999998888887777654432111               134667777899999


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      .+........+++... +++|..+.+++
T Consensus       367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~  393 (461)
T KOG3098|consen  367 DACFNTQRYVIIALLY-PDDRAQAFSLF  393 (461)
T ss_pred             HHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence            9999999999999999 67777766654

>PRK03612 spermidine synthase; Provisional

Probab=93.78  E-value=3.6  Score=34.67  Aligned_cols=91  Identities=12%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             eeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHH-HHHHHH-HHHHHHHHHhhc-hhh-HHHHHHHHHHhhcc
Q psy3312          82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGF-GLLVST-LATLATPLAARS-FGA-VGILCARFIVGLGQ  157 (189)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~r~l~G~~~  157 (189)
                      +|-+....+.+.+++..|..+|..+.+++.++.-++....- +..+.+ ++..+....... ... ..+....++.++..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555667888999999999999999888744333322111 111111 111111111110 001 12233445567778


Q ss_pred             ccchhHHHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWV  172 (189)
Q Consensus       158 g~~~~~~~~~~~~~~  172 (189)
                      |..+|....+..+..
T Consensus       125 G~~~Pl~~~~~~~~~  139 (521)
T PRK03612        125 GMEIPLLMRILQRIR  139 (521)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            888887777766543

>KOG1237|consensus

Probab=92.80  E-value=1.4  Score=37.46  Aligned_cols=94  Identities=20%  Similarity=0.256  Sum_probs=70.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhch-----------------
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSF-----------------  141 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~-----------------  141 (189)
                      .+++.+...+.-....+.-..-...+..+.++|-| ||-+++.++.++..++..+..+.....                 
T Consensus        66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~  145 (571)
T KOG1237|consen   66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE  145 (571)
T ss_pred             HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence            77777776666666677666777889999999966 899999999888888865554432110                 


Q ss_pred             -----hhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312         142 -----GAVGILCARFIVGLGQGPAYPSMNVILAQWVP  173 (189)
Q Consensus       142 -----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  173 (189)
                           ....+.....+..+|.|+.-+....+-+|-++
T Consensus       146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd  182 (571)
T KOG1237|consen  146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFD  182 (571)
T ss_pred             CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccC
Confidence                 12355667777788999999999999999998

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=91.76  E-value=0.71  Score=36.80  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhchh------hHHHHHHHHHHhhccccchhHHHHHHHhhcCccc---hhhHHHHHhh
Q psy3312         118 YVLGFGLLVSTLATLATPLAARSFG------AVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE---RGRMGALVFA  186 (189)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~  186 (189)
                      |++.++.+++.++.+++.++.....      .+.+.++.++.++|.|+.-+....+.+|.+++++   |.++..+++.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~   79 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW   79 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence            5677888888888888655543221      2577888889999999999999999999998763   4455555554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG4332|consensus

Probab=91.31  E-value=1.5  Score=33.95  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCc--hhHHHHHHHHHHHHHHHHH----HhhchhhHHHHHHHHHHhhccccchh
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGK--YVLGFGLLVSTLATLATPL----AARSFGAVGILCARFIVGLGQGPAYP  162 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~  162 (189)
                      -|.+.+.+++..++|+-+..++..|-.+|  ..+.+..++......+..+    +++..+...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            57788888888888888887777765554  3444444443333322222    22222233335566666677788899


Q ss_pred             HHHHHHHhhcCccchhhHHHHHh
Q psy3312         163 SMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       163 ~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      .++.+=.+..|.++|...+.++.
T Consensus       364 SimkmRsqyIPEearstimNfFR  386 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFR  386 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhhee
Confidence            99999999999999998887653

>KOG3097|consensus

Probab=89.99  E-value=2.4  Score=33.61  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=52.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312          96 FFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV  172 (189)
Q Consensus        96 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  172 (189)
                      ..+..+...++.+.+.+++|.|.++.++...+...... -+-+.   +..++-.-...|++.+..+...-+++++..
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr---~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPR---YETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchh---HHhhccHHHhhccccccccccCcceecHHH
Confidence            33445566666669999999999999888877654432 22233   566777888899999999887777766654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=88.92  E-value=11  Score=30.66  Aligned_cols=90  Identities=12%  Similarity=0.066  Sum_probs=66.6

Q ss_pred             eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312          81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA  160 (189)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  160 (189)
                      .++.+.-..+.+.-+-.+...+..+.+.++.+|...+.-+....++..++.++.+++++   .+.-+++-.+.+++.|..
T Consensus        53 ~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~ssg~G  129 (402)
T PF02487_consen   53 RRDCKSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASLSSGLG  129 (402)
T ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhhhhhhh
Confidence            34444444566666777778888888889999998766666677777788888888777   777788888999988888


Q ss_pred             hhHHHHHHHhhcCc
Q psy3312         161 YPSMNVILAQWVPK  174 (189)
Q Consensus       161 ~~~~~~~~~~~~~~  174 (189)
                      ......+.+ .+++
T Consensus       130 E~tfL~lt~-~y~~  142 (402)
T PF02487_consen  130 EVTFLSLTH-FYGK  142 (402)
T ss_pred             HHHHHHHHH-hcCc
Confidence            777777644 5544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.49  E-value=2.8  Score=27.21  Aligned_cols=38  Identities=18%  Similarity=0.085  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHH
Q psy3312          90 GLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVS  127 (189)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~  127 (189)
                      ..-++.-++..++-....||+.||| |-++.-++.+++.
T Consensus        45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll   83 (116)
T COG5336          45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL   83 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            3445666677777777889999998 6666544444333

>KOG0637|consensus

Probab=86.98  E-value=8.1  Score=32.09  Aligned_cols=80  Identities=18%  Similarity=0.041  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL  168 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  168 (189)
                      -.|-..++.+...+.+...-++.+|+|-|+.++.+...+.++..+..+.++   .+....-+-..|+-.+.....-...+
T Consensus       334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~---~~~~~~~~~~~G~~~~~~~~~p~~l~  410 (498)
T KOG0637|consen  334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLN---TYVVLSHRSTAGILSSPLLTVPYGAL  410 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhh---HHHHHHHHhhcceeecchhcccHHHH
Confidence            345566777888889999999999999887777777767777777777776   56777777777765555555444444


Q ss_pred             Hhh
Q psy3312         169 AQW  171 (189)
Q Consensus       169 ~~~  171 (189)
                      ++.
T Consensus       411 ~~y  413 (498)
T KOG0637|consen  411 ALY  413 (498)
T ss_pred             HHH
Confidence            444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=86.77  E-value=9.2  Score=31.27  Aligned_cols=92  Identities=5%  Similarity=-0.044  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHH--HHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312          89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLL--VSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV  166 (189)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  166 (189)
                      -|.+-++..+...++++..|.+..++.+..-+..+.+  +.+...+++....+   .|...++.++.+.......+.+..
T Consensus       287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~---Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGN---IWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3777788888888899999999888877554444433  33333444455555   888888888877777767777777


Q ss_pred             HHHhhcCccchhhHHHH
Q psy3312         167 ILAQWVPKTERGRMGAL  183 (189)
Q Consensus       167 ~~~~~~~~~~r~~~~~~  183 (189)
                      -++.....+.-|..+|+
T Consensus       364 qIA~~l~~e~yaLVFGi  380 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGI  380 (412)
T ss_pred             HHHHhccccceeeeeee
Confidence            77777765555655544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.52  E-value=17  Score=29.99  Aligned_cols=94  Identities=15%  Similarity=0.009  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhCCc-hhHHHHHHHHHHHHHHHHHHhhc---------hhhHHHHHHHHHHhhcccc
Q psy3312          90 GLILSSFFWGYVLNHIPGALIAERYGGK-YVLGFGLLVSTLATLATPLAARS---------FGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~  159 (189)
                      -+....++++-.+|..+..+.. ..++| +.+.+..+.=.+...++.++...         .+-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4445677778888877554321 11222 13333333222222222222110         1256667778999999998


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHH
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~  184 (189)
                      .....+.+..+..+++||..+-.+.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~  413 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALM  413 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            8889999999999988887665544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=85.30  E-value=0.76  Score=37.66  Aligned_cols=104  Identities=18%  Similarity=0.053  Sum_probs=72.7

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-hhch------hhHHHHHHHHHHhhc
Q psy3312          84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-ARSF------GAVGILCARFIVGLG  156 (189)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~r~l~G~~  156 (189)
                      +++...+.+..+..++..++..+.....-++.-|+++....++..+..+..... ....      +.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            777788888888888889999999888888888888888877776655532211 1100      022333344555555


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+..+-....+++|.+|+..-|+..++..+.
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~  362 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASF  362 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            5556667788999999999999988887653

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=84.04  E-value=0.32  Score=41.05  Aligned_cols=80  Identities=14%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH-HHHH
Q psy3312          24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW-GYVL  102 (189)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  102 (189)
                      ..+++...++..........+....|.+.                          +.+|+.++++++++..+..+ +.++
T Consensus       304 Np~f~~~~la~~~~~~~~~G~~tF~pKyl--------------------------E~QF~~sas~A~~l~G~v~ip~~~~  357 (539)
T PF03137_consen  304 NPVFMCLILAGVFESFIVSGFATFLPKYL--------------------------ESQFGLSASQASLLTGIVSIPGAAL  357 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHhCCCHHHHHHHHhhhhcchhhe
Confidence            34445455555555555555555566555                          37899999999999876555 6788


Q ss_pred             hhhhhhhhhhhhCC--chhHHHHHHHHHH
Q psy3312         103 NHIPGALIAERYGG--KYVLGFGLLVSTL  129 (189)
Q Consensus       103 ~~~~~g~l~dr~g~--r~~l~~~~~~~~~  129 (189)
                      |.+++|++..|+..  |..+....+...+
T Consensus       358 G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  358 GILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             -----------------------------
T ss_pred             ehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence            99999999998853  4554444444333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3574|consensus

Probab=82.97  E-value=11  Score=30.92  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=23.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh-----hhCCchhHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE-----RYGGKYVLG  121 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~l~  121 (189)
                      +.-|.+-++.+....++.  --.--+++.++.|     |+||||..+
T Consensus        58 ~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   58 QAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             cCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccccee
Confidence            444555555554332221  1234567888888     999998644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	8e-27
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-06

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  104 bits (261), Expect = 8e-27
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 29/168 (17%)

Query: 23  RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEF 82
           R+ I L  F  +A  Y+ R   ++A+  +                             E 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQ 57

Query: 83  DWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG 142
            +     G  LS     Y  +      +++R   +  L  GL+++    L       +  
Sbjct: 58  GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 117

Query: 143 AVGILCA-RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
           ++ ++    F+ G  QG  +P     +  W  + ERG + ++      
Sbjct: 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 165

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 73  NQTVNKHY--EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130
           N  +   +   F       GLI S+F++GY +  IP  ++ ++   K  +  GL +  L 
Sbjct: 45  NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104

Query: 131 TLATPLAARSFGAVGILCARFIVGLGQG 158
                 AA        L   FI+  G G
Sbjct: 105 AALFWPAAEIMNYTLFLVGLFIIAAGLG 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.8
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.79
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.79
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.68
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.63
2xut_A	524	Proton/peptide symporter family protein; transport	99.58
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.23
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.12
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.89
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.85
2xut_A	524	Proton/peptide symporter family protein; transport	97.95

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.80  E-value=6.6e-19  Score=140.60  Aligned_cols=136  Identities=19%  Similarity=0.300  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      +.++..+...++..+........+.+..|.+.                           +++ .+..+.+++.+++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~-~s~~~~g~~~~~~~~~~   75 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------------------------EQG-FSRGDLGFALSGISIAY   75 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT---------------------------SST-TCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHh-ccHhHHHHHHHHHHHHH
Confidence            34456666677777788888888888899888                           778 99999999999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH----HhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccc
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL----AARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE  176 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~  176 (189)
                      .++.+++|+++||+|||+++.++.++.+++.++.++    +++   ++.++++|+++|++.+...+...+++.|++|+++
T Consensus        76 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  152 (451)
T 1pw4_A           76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  152 (451)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh
Confidence            999999999999999999999999999999999988    776   8899999999999999999999999999999999


Q ss_pred             hhhHHHHHhhc
Q psy3312         177 RGRMGALVFAG  187 (189)
Q Consensus       177 r~~~~~~~~~~  187 (189)
                      |+++.++...+
T Consensus       153 r~~~~~~~~~~  163 (451)
T 1pw4_A          153 RGGIVSVWNCA  163 (451)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            99999987654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.79  E-value=9.7e-19  Score=139.24  Aligned_cols=134  Identities=19%  Similarity=0.188  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312          24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN  103 (189)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (189)
                      +..+.++.+..+.........++..|.+.                           +++|++..+.+++.+.+.++..++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~i~   77 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDILLPQFQ---------------------------QAFTLTNFQAGLIQSAFYFGYFII   77 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHSCCCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            34444456666667777778888888888                           889999999999999999999999


Q ss_pred             hhhhhhhhhhhCCchhHHHHHHHHHHHHHHH---HHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312         104 HIPGALIAERYGGKYVLGFGLLVSTLATLAT---PLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM  180 (189)
Q Consensus       104 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~  180 (189)
                      .++.|+++||+|||+++..+.++.+++.++.   .++++   ++.+++.|+++|++.+...+....+++|++|+++|+++
T Consensus        78 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  154 (438)
T 3o7q_A           78 PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR  154 (438)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred             HHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence            9999999999999999999999999999988   66666   89999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy3312         181 GALVFAG  187 (189)
Q Consensus       181 ~~~~~~~  187 (189)
                      .++...+
T Consensus       155 ~~~~~~~  161 (438)
T 3o7q_A          155 LNLAQTF  161 (438)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.79  E-value=7.3e-19  Score=142.07  Aligned_cols=145  Identities=17%  Similarity=0.192  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312          21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY  100 (189)
Q Consensus        21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (189)
                      ++.+.+.+++.++.+....+...++...+.+......+.+                   ...+.+..+.+++.+.+.+|.
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~g~~~s~~~~G~   68 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQN-------------------LSESAANSLLGFCVASALIGC   68 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGC-------------------CCHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------------------CCcccHHHHHHHHHHHHHHHH
Confidence            3345555555666666666777777777776521111110                   222345567889999999999


Q ss_pred             HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH------------------HhhchhhHHHHHHHHHHhhccccchh
Q psy3312         101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL------------------AARSFGAVGILCARFIVGLGQGPAYP  162 (189)
Q Consensus       101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~r~l~G~~~g~~~~  162 (189)
                      +++++++|+++||+|||+++.++.+++.++.++.++                  +++   ++.++++|+++|++.|+..+
T Consensus        69 ~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~g~G~~~~  145 (491)
T 4gc0_A           69 IIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGIGVGLASM  145 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998874                  455   88999999999999999999


Q ss_pred             HHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         163 SMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       163 ~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..+.+++|+.|+++|++..++...+
T Consensus       146 ~~~~~i~E~~p~~~rg~~~~~~~~~  170 (491)
T 4gc0_A          146 LSPMYIAELAPAHIRGKLVSFNQFA  170 (491)
T ss_dssp             HHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCHHhhhhhHHhhhhh
Confidence            9999999999999999998876543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.68  E-value=2.1e-16  Score=123.56  Aligned_cols=128  Identities=19%  Similarity=0.243  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312          30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL  109 (189)
Q Consensus        30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (189)
                      ..+..+........+.+..|.+.                           +++|.++.+.+++.+.+.++..++.++.|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~   57 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMA---------------------------RDLNVREGAVQSVMGAYLLTYGVSQLFYGP   57 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------------------------TTSSSTTHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556666667777888887                           889999999999999999999999999999


Q ss_pred             hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ++||+|||+++..+.++..++.++..++++   ++.+++.|+++|++.+...+....++.|++|+++|+++.++...+
T Consensus        58 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (375)
T 2gfp_A           58 ISDRVGRRPVILVGMSIFMLATLVAVTTSS---LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG  132 (375)
T ss_dssp             HHTTSCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887   889999999999999999999999999999999999999987654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.63  E-value=1.4e-15  Score=122.89  Aligned_cols=104  Identities=14%  Similarity=0.220  Sum_probs=95.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  158 (189)
                      +++|++..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++.+++++   ++.+++.|+++|++.+
T Consensus        47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~  123 (491)
T 4aps_A           47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG---ASALFGSIILIIIGTG  123 (491)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence            3499999999999999999999999999999999 89999999999999999999988877   8899999999999999


Q ss_pred             cchhHHHHHHHhhcCccc--hhhHHHHHhh
Q psy3312         159 PAYPSMNVILAQWVPKTE--RGRMGALVFA  186 (189)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~  186 (189)
                      ...+....+++|++|+++  |+++.++++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  153 (491)
T 4aps_A          124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVF  153 (491)
T ss_dssp             HHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHcCcccccceeeehHHHH
Confidence            999999999999999988  6667766544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.58  E-value=1.9e-14  Score=117.22  Aligned_cols=101  Identities=15%  Similarity=0.231  Sum_probs=93.6

Q ss_pred             eeee------ccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHH
Q psy3312          80 YEFD------WDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARF  151 (189)
Q Consensus        80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~  151 (189)
                      +++|      ++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++..+++ +   ++.+++.|+
T Consensus        41 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  117 (524)
T 2xut_A           41 TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS---VQGFYTGLF  117 (524)
T ss_dssp             HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSC---HHHHHHHHH
T ss_pred             HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHH
Confidence            5667      9999999999999999999999999999999 999999999999999999888887 6   888999999


Q ss_pred             HHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312         152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGAL  183 (189)
Q Consensus       152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  183 (189)
                      ++|++.+...+....++.|++|+++|++..++
T Consensus       118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A          118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             HHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence            99999999999999999999999999866555

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.23  E-value=1.4e-10  Score=92.24  Aligned_cols=107  Identities=7%  Similarity=0.030  Sum_probs=89.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      +.+|++..+.+++.+...++.+++.++.|++.||+  |||+.+..+.++.. ++.++..+.++.. .+.+.+..++.|++
T Consensus       281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN-PTVDMICMIVIGFL  359 (451)
T ss_dssp             TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC-HHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999  99998888877766 5555555543222 66777788889998


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      .+...+....++.|.+|+++|+++.|+.+..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLF  390 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence            8888888899999999999999999998653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.12  E-value=2.2e-10  Score=90.86  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      +.+|.+..+.+++.+...++.+++.++.|++.||+|||+++..+.++..++.++..+.++   .+.+ +..++.|++.+.
T Consensus       288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~g~~~~~  363 (438)
T 3o7q_A          288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---HVGL-IALTLCSAFMSI  363 (438)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH---HHHH-HHHHHHHHHHTT
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC---cHHH-HHHHHHHHHHHH
Confidence            556889999999999999999999999999999999999999999988888877777655   4443 344788899999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      .++....+..|.+|++ |+++.++..
T Consensus       364 ~~~~~~~~~~~~~~~~-~~~~~~~~~  388 (438)
T 3o7q_A          364 QYPTIFSLGIKNLGQD-TKYGSSFIV  388 (438)
T ss_dssp             HHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccc-ccchhhHHH
Confidence            9999999999999866 887777655

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.00  E-value=2.9e-09  Score=84.50  Aligned_cols=97  Identities=11%  Similarity=0.027  Sum_probs=77.5

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312          85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM  164 (189)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  164 (189)
                      +....++..+...++.+++.++.|++.||+|||+++..+.++.++..++.++.++   .+.+++..++.+++.+...+..
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  333 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---HHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777888888899999999999999999998888887777666655544   5666677777777766666677


Q ss_pred             HHHHHhhcCccchhhHHHHH
Q psy3312         165 NVILAQWVPKTERGRMGALV  184 (189)
Q Consensus       165 ~~~~~~~~~~~~r~~~~~~~  184 (189)
                      ..+++|.+|++.|+++.++.
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          334 FKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHH
Confidence            88999999999999998874

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.98  E-value=3e-10  Score=90.20  Aligned_cols=103  Identities=11%  Similarity=0.029  Sum_probs=67.7

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHH---HHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA---TPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      +++|+++.+.+++.+.+.++..++++++|+++||+|||+++..+.++..+....   ..+.+..  .......+.+.|++
T Consensus        36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  113 (417)
T 2cfq_A           36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGIY  113 (417)
T ss_dssp             TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGSS
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            668999999999999999999999999999999999999999888776542211   1222110  01123455666665


Q ss_pred             cccchhHHHHHHHhhcCc--cchhhHHHHH
Q psy3312         157 QGPAYPSMNVILAQWVPK--TERGRMGALV  184 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~--~~r~~~~~~~  184 (189)
                      .+..++.......++.++  ++|+...+..
T Consensus       114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~  143 (417)
T 2cfq_A          114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRA  143 (417)
T ss_dssp             TTHHHHTTHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHhhhhcccchHHH
Confidence            555444444455555443  3445444444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.93  E-value=7.5e-10  Score=86.26  Aligned_cols=105  Identities=12%  Similarity=0.013  Sum_probs=77.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHH-HHHHHHHHHHHh-hchhhHHHHHHHHHHhhcc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLV-STLATLATPLAA-RSFGAVGILCARFIVGLGQ  157 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~  157 (189)
                      +++|.++.+.+++.+...++..++.++.+++.||++++  +..+... ...+..+..... ...+.+.+.+..++.|++.
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  305 (375)
T 2gfp_A          228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGA  305 (375)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence            44788889999999999999999999999999999883  2333322 222222112111 0111666777888899999


Q ss_pred             ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         158 GPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      +...+....++.|.+| ++|+++.++.+..
T Consensus       306 ~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~  334 (375)
T 2gfp_A          306 GMLFPLATSGAMEPFP-FLAGTAGALVGGL  334 (375)
T ss_dssp             HHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence            9889999999999998 8999999988653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.89  E-value=3e-09  Score=85.74  Aligned_cols=108  Identities=15%  Similarity=0.042  Sum_probs=83.5

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH-----HHHHHHHHHHHHHHHHhh------chhhHHHHH
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG-----FGLLVSTLATLATPLAAR------SFGAVGILC  148 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~  148 (189)
                      +.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+++..+......      ..+.+.+.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (491)
T 4aps_A          312 ERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVG  391 (491)
T ss_dssp             HSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHH
T ss_pred             HHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHH
Confidence            445555567788888888899999999999999999986554     677777777666665431      112667778


Q ss_pred             HHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         149 ARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       149 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      ..++.|++.+...+....++.|.+|+++|+++.|+.+..
T Consensus       392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  430 (491)
T 4aps_A          392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS  430 (491)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            888999999998999999999999999999999987653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.85  E-value=6e-08  Score=78.00  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHH--HHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-GAVGILCARF--IVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~--l~G~~  156 (189)
                      +..+.+............+...++.++.+++.||+|||+.++.+.....++.+......... ..+..++..+  ..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4gc0_A          305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA  384 (491)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            45555555566666777788899999999999999999999988888877776555433211 1122222222  22222


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      . +..+....+.+|.+|++.|+++.|+.+.
T Consensus       385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~  413 (491)
T 4gc0_A          385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVA  413 (491)
T ss_dssp             T-TTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            2 2346778899999999999999998754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.95  E-value=4.2e-06  Score=67.85  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=69.5

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhh----hhhCC----chhHHHHHHHHHHHHHHHHHHh------hchhhHHHHHHHHHH
Q psy3312          88 TQGLILSSFFWGYVLNHIPGALIA----ERYGG----KYVLGFGLLVSTLATLATPLAA------RSFGAVGILCARFIV  153 (189)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~l~  153 (189)
                      ..+++.....++..+..++.+++.    ||.|+    ++.+..+.++.+++.++..+..      ...+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            345555555566677777777765    55543    2456677777777776666543      011266777888999


Q ss_pred             hhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312         154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG  187 (189)
Q Consensus       154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  187 (189)
                      |++.+...+....++.|.+|+++|++++|+.+..
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  449 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS  449 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH
Confidence            9999999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.004

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 29/161 (18%)

Query: 23  RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEF 82
           R+ I L  F  +A  Y+ R   ++A+  +                             E 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQ 54

Query: 83  DWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG 142
            +     G  LS     Y  +      +++R   +  L  GL+++    L       +  
Sbjct: 55  GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114

Query: 143 AVGILCA-RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182
           ++ ++    F+ G  QG  +P     +  W  + ERG + +
Sbjct: 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 155

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 81  EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
                +   G+I ++     +L      L++++ G +  L + +    +      +    
Sbjct: 37  INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96

Query: 141 FG-AVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
                 IL    + G+  G  + +    +  ++ K  R        A  +
Sbjct: 97  PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.83
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.16
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.15
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.88

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2e-20  Score=146.80  Aligned_cols=141  Identities=19%  Similarity=0.293  Sum_probs=124.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312          19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW   98 (189)
Q Consensus        19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (189)
                      .+++||.++.+++++++..+.++..++...|.+.                            ++|++.++.+++.+.+.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~----------------------------~~g~s~~~~g~~~s~~~~   70 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQGFSRGDLGFALSGISI   70 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT----------------------------SSTTCSSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhCcCHHHHHHHHHHHHH
Confidence            3456788888888888888889888998888774                            579999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch
Q psy3312          99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER  177 (189)
Q Consensus        99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r  177 (189)
                      ++.++++++|+++||+|||+++..+.++.+++.++.+++.... +++.+++.|++.|++.+..++....++.|++|+++|
T Consensus        71 ~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r  150 (447)
T d1pw4a_          71 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER  150 (447)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999998887765321 267899999999999999999999999999999999


Q ss_pred             hhHHHHHhhc
Q psy3312         178 GRMGALVFAG  187 (189)
Q Consensus       178 ~~~~~~~~~~  187 (189)
                      ++++++.+.+
T Consensus       151 ~~~~~~~~~~  160 (447)
T d1pw4a_         151 GGIVSVWNCA  160 (447)
T ss_dssp             HHHHHHHHHH
T ss_pred             cccccccccc
Confidence            9999987654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=5.5e-11  Score=90.42  Aligned_cols=93  Identities=11%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHhhccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-AVGILCARFIVGLGQG  158 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g  158 (189)
                      +++|+++++.|++.+++.++..+++++.|+++||+|||++++.+.+...++..+......... ....++.+.+.+.+.+
T Consensus        36 ~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (417)
T d1pv7a_          36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG  115 (417)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGG
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccc
Confidence            778999999999999999999999999999999999999999999888888877776655210 1223455566665555


Q ss_pred             cchhHHHHHHHhhc
Q psy3312         159 PAYPSMNVILAQWV  172 (189)
Q Consensus       159 ~~~~~~~~~~~~~~  172 (189)
                      ...........+..
T Consensus       116 ~~~~~~~~~~~~~~  129 (417)
T d1pv7a_         116 FCFNAGAPAVEAFI  129 (417)
T ss_dssp             GGGTTHHHHHHHHH
T ss_pred             ccccchhhcccccc
Confidence            55544444444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=5.5e-11  Score=90.45  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=91.4

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  159 (189)
                      .+.+.+....+.......++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++   .+.+++..++.|++.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~  328 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHHHHHH
Confidence            344556667788888888999999999999999999999999999999998888888777   78888899999999999


Q ss_pred             chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312         160 AYPSMNVILAQWVPKTERGRMGALVF  185 (189)
Q Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~~~~  185 (189)
                      ..+....++.|.+|+++|++..++.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (417)
T d1pv7a_         329 LLVGCFKYITSQFEVRFSATIYLVCF  354 (417)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHhHHHHHHHHHH
Confidence            99999999999999999999999754

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.1e-08  Score=77.33  Aligned_cols=106  Identities=8%  Similarity=0.010  Sum_probs=80.3

Q ss_pred             eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHH---HHHHHhhchhhHHHHHHHHHHhhc
Q psy3312          80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL---ATPLAARSFGAVGILCARFIVGLG  156 (189)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~l~G~~  156 (189)
                      +.++.+..+.++......++.+++.++.|++.||++|++......+...+...   +....... +.+...+..++.|++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~  356 (447)
T d1pw4a_         278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG-NPTVDMICMIVIGFL  356 (447)
T ss_dssp             TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT-CHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999987644433333322222   22222221 256667777888988


Q ss_pred             cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312         157 QGPAYPSMNVILAQWVPKTERGRMGALVFA  186 (189)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  186 (189)
                      .+...+....+..|.+|++.|+++.|+.+.
T Consensus       357 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  386 (447)
T d1pw4a_         357 IYGPVMLIGLHALELAPKKAAGTAAGFTGL  386 (447)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            888888899999999999999999998754