Psyllid ID: psy3318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDAL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccHHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHcccEEEEEEEcccHHHcccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEccEEEccHHHHHHcc
Coil and Loop (DISEMBL)
MSADEPFESVETILQKYIPEDELKLVNAVLygeplkklylpnsksnefnvvgykfgakpessrpprlVRVGIIQNhignstvscnvpqersatYDRVEKLINAAGESGVNVLCLQEawrrpdrygsQVYLIVKRQSDAL
Flexible Loop (DISEMBL)
MSADEPFESVETILqkyipedelKLVNAVLYGEPLKklylpnsksneFNVVGYKfgakpessrppRLVRVGIIQnhignstvscnvpqERSATYDRVEKLINaagesgvnvLCLQEAwrrpdrygsqvYLIVKRQSDAL
Low Complexity Region (SEG)
MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDAL
Disordered region (IsUnstruct)
**********ETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFG*********RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIV*******
Disordered Region (DISOPRED)
******F**VETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDA*
Disordered Region (DISEMBL)
*********VETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDAL
Disordered Region (DISPRO)
*****PFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q964D8	391	Beta-ureidopropionase OS=	yes	N/A	0.820	0.291	0.443	2e-20
Q03248	393	Beta-ureidopropionase OS=	yes	N/A	0.820	0.290	0.391	3e-18
Q8VC97	393	Beta-ureidopropionase OS=	yes	N/A	0.820	0.290	0.383	2e-17
Q5RBM6	384	Beta-ureidopropionase OS=	yes	N/A	0.834	0.302	0.373	2e-16
Q9UBR1	384	Beta-ureidopropionase OS=	yes	N/A	0.834	0.302	0.373	2e-16

>sp|Q964D8|BUP1_DICDI Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 10/124 (8%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGE---------PLKKLYLPNSKSNEFNVVGYKFGA 57
           FESV+  L+KYIP +EL  V  +LYG          P+ +  L  +  N F +V  K  A
Sbjct: 5   FESVQATLEKYIPAEELSEVKRILYGYNRGHHVKSLPICQEALDLANKNNFEIVASKVEA 64

Query: 58  KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
            PE  R PR+VR+GIIQN IG  T +  +  +  A   ++EK+I+AAG  GVNVLCLQE 
Sbjct: 65  DPEQLRKPRIVRLGIIQNSIGAETTA-PIQDQYLAIEAKIEKMIDAAGAMGVNVLCLQET 123

Query: 118 WRRP 121
           W  P
Sbjct: 124 WHMP 127

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 6

>sp|Q03248|BUP1_RAT Beta-ureidopropionase OS=Rattus norvegicus GN=Upb1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 6/120 (5%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGAKPES 61
           ++S+E  L+K++P D+L  V  +LYG+  + L LP      +    F + GY FGA  E 
Sbjct: 6   WQSLEQCLEKHLPPDDLSQVKRILYGKQTRNLDLPRKALEAASERNFELKGYAFGAAKEQ 65

Query: 62  SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
            R P++VRVG++QN I   T S  V ++ SA + R+E++   A   GVN++C QEAW  P
Sbjct: 66  QRCPQIVRVGLVQNRIPLPT-SAPVAEQVSALHKRIEEIAEVAAMCGVNIICFQEAWNMP 124

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q8VC97|BUP1_MOUSE Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 6/120 (5%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGAKPES 61
           ++S+E  L+K++P D+L  V  +LYG+  + L LP      +    F + GY FGA  E 
Sbjct: 6   WQSLEQCLEKHLPPDDLAQVKRILYGKQTRNLDLPREALKAASERNFELKGYAFGAAKEQ 65

Query: 62  SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
            R P++VRVG++QN I   T S  V ++ SA +  +E++   A   GVN++C QEAW  P
Sbjct: 66  QRCPQIVRVGLVQNRIPLPT-SAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMP 124

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 10/126 (7%)

Query: 3   ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
           A   ++S+E  L+K++P  +L+ V  VLYG+ L+KL LP      +   +F + GY F A
Sbjct: 2   AGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEA 61

Query: 58  KPESSRPPRLVRVGIIQNHIGNSTVSCNVP--QERSATYDRVEKLINAAGESGVNVLCLQ 115
             E  R PR+V VG++QN I    +  N P  ++ SA + R++ ++  A   GVN++C Q
Sbjct: 62  AEEQLRRPRIVHVGLVQNRI---PLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQ 118

Query: 116 EAWRRP 121
           EAW  P
Sbjct: 119 EAWTMP 124

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 10/126 (7%)

Query: 3   ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
           A   ++S+E  L+K++P  +L+ V  VLYG+ L+KL LP      +   +F + GY F A
Sbjct: 2   AGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEA 61

Query: 58  KPESSRPPRLVRVGIIQNHIGNSTVSCNVP--QERSATYDRVEKLINAAGESGVNVLCLQ 115
             E  R PR+V VG++QN I    +  N P  ++ SA + R++ ++  A   GVN++C Q
Sbjct: 62  AEEQLRRPRIVHVGLVQNRI---PLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQ 118

Query: 116 EAWRRP 121
           EAW  P
Sbjct: 119 EAWTMP 124

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
443734532	247	hypothetical protein CAPTEDRAFT_176971 [	0.899	0.506	0.436	3e-21
225716240	383	Beta-ureidopropionase [Esox lucius]	0.856	0.310	0.452	1e-20
239792552	194	ACYPI003488 [Acyrthosiphon pisum]	0.863	0.618	0.451	2e-20
330831796	393	hypothetical protein DICPUDRAFT_156598 [	0.820	0.290	0.459	3e-20
281206693	402	beta-alanine synthase [Polysphondylium p	0.834	0.288	0.460	4e-20
193688154	368	PREDICTED: beta-ureidopropionase-like [A	0.820	0.309	0.474	7e-20
328875945	403	beta-alanine synthase [Dictyostelium fas	0.812	0.280	0.455	1e-19
41054541	384	beta-ureidopropionase [Danio rerio] gi|3	0.820	0.296	0.441	3e-19
66821393	391	hypothetical protein DDB_G0274123 [Dicty	0.820	0.291	0.443	1e-18
241690472	406	beta-ureidopropionase, putative [Ixodes	0.863	0.295	0.404	2e-18

>gi|443734532|gb|ELU18476.1| hypothetical protein CAPTEDRAFT_176971 [Capitella teleta]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 8/133 (6%)

Query: 1   MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKF 55
           MS +E  +S E+IL+K++PE ELK +  ++YG  LKKL LP+      +  +F V GY  
Sbjct: 1   MSCEE-IKSAESILEKHLPEAELKEIQRIIYGGTLKKLELPSEALQLGQQKDFEVAGYIL 59

Query: 56  G-AKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114
           G A+ E  RPPR+VRVG+IQN I   T    + ++R A + R+ ++I+AA  +GVN+LCL
Sbjct: 60  GEAQREEVRPPRIVRVGLIQNKIVLPT-DAPILEQRDALHQRIVEMIDAAALAGVNILCL 118

Query: 115 QEAWRRPDRYGSQ 127
           QEAW  P  + ++
Sbjct: 119 QEAWTMPFAFCTR 131

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|225716240|gb|ACO13966.1| Beta-ureidopropionase [Esox lucius]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 7/126 (5%)

Query: 1   MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKF 55
           MS  E FES+E  L+K+IP+ ELK V  +L+G+  KKL LP      + + +F + GY F
Sbjct: 1   MSGSE-FESLEKTLEKHIPDAELKEVKRILFGKETKKLALPACAVEAASARDFELQGYLF 59

Query: 56  GAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115
            A PE  RPPR VRVG+IQNHI   T    V  + +A Y R+  +++ A   GVN++C Q
Sbjct: 60  EASPEQLRPPRTVRVGLIQNHIVLPT-DAPVLDQITALYKRIGDMVDVAAMCGVNIVCFQ 118

Query: 116 EAWRRP 121
           EAW  P
Sbjct: 119 EAWTMP 124

Source: Esox lucius

Species: Esox lucius

Genus: Esox

Family: Esocidae

Order: Esociformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|239792552|dbj|BAH72606.1| ACYPI003488 [Acyrthosiphon pisum]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 81/124 (65%), Gaps = 4/124 (3%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSN---EFNVVGYKFGAKPESSR 63
           FE+++T L+KYIP++EL  V  +LYG+ L++L LP S  N   +  V G+KF +  E  R
Sbjct: 2   FENIDTCLEKYIPQEELNHVQRILYGKKLEELQLPESCINNVDDVEVKGFKFDSLTEELR 61

Query: 64  PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123
             R+VRVG+IQN I   T +  V Q R+A Y ++ K+I+ A E+ VNVLCLQEAW  P  
Sbjct: 62  EKRIVRVGVIQNQIVLPTTAPLVEQ-RNAIYQKISKIISLAAEANVNVLCLQEAWPMPFV 120

Query: 124 YGSQ 127
           + ++
Sbjct: 121 FCTR 124

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330831796|ref|XP_003291942.1| hypothetical protein DICPUDRAFT_156598 [Dictyostelium purpureum] gi|325077856|gb|EGC31542.1| hypothetical protein DICPUDRAFT_156598 [Dictyostelium purpureum]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 10/124 (8%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGE---------PLKKLYLPNSKSNEFNVVGYKFGA 57
           FESV+  L+KYIP +EL  V  +LYG          P+ +  L  SK + F +V  K  A
Sbjct: 6   FESVQATLEKYIPAEELSEVKRILYGTNRGKHVQSIPITQEALELSKKHNFEIVASKIEA 65

Query: 58  KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
           +PE  R PR+VR+GIIQN IG  T +  V ++  A   ++EK+I+AAG  GVNVLCLQE 
Sbjct: 66  EPEQLRKPRIVRIGIIQNTIGKET-TAPVQEQYLAIEAKIEKMIDAAGAMGVNVLCLQET 124

Query: 118 WRRP 121
           W  P
Sbjct: 125 WHMP 128

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|281206693|gb|EFA80879.1| beta-alanine synthase [Polysphondylium pallidum PN500]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 80/126 (63%), Gaps = 10/126 (7%)

Query: 5   EPFESVETILQKYIPEDELKLVNAVLYG----EPLKKLYLPN-----SKSNEFNVVGYKF 55
           +  ESVE +L+KYIPEDELK V  +LYG    + ++ L +P      ++++ F VV  K 
Sbjct: 9   QKIESVEKVLEKYIPEDELKEVKRILYGLNRGQIVESLPIPENVSKLAQASNFEVVSSKI 68

Query: 56  GAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115
            A+PE  R PR+V++GIIQN IG  T    V  +  A  +++EK+I+AAG  GVNVLCLQ
Sbjct: 69  TAEPEQLRKPRIVKIGIIQNAIGAPTTDP-VHDQYMAIQNKIEKMIDAAGALGVNVLCLQ 127

Query: 116 EAWRRP 121
           E W  P
Sbjct: 128 ETWHMP 133

Source: Polysphondylium pallidum PN500

Species: Polysphondylium pallidum

Genus: Polysphondylium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|193688154|ref|XP_001948310.1| PREDICTED: beta-ureidopropionase-like [Acyrthosiphon pisum]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 4/118 (3%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSN---EFNVVGYKFGAKPESSR 63
           FE+++T L+KYIP++EL  V  +LYG+ L++L LP S  N   +  V G+KF +  E  R
Sbjct: 2   FENIDTCLEKYIPQEELNHVQRILYGKKLEELQLPESCINNVDDVEVKGFKFDSLTEELR 61

Query: 64  PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
             R+VRVG+IQN I   T +  V Q R+A Y ++ K+I+ A E+ VNVLCLQEAW  P
Sbjct: 62  EKRIVRVGVIQNQIVLPTTAPLVEQ-RNAIYQKISKIISLAAEANVNVLCLQEAWPMP 118

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328875945|gb|EGG24309.1| beta-alanine synthase [Dictyostelium fasciculatum]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 10/123 (8%)

Query: 8   ESVETILQKYIPEDELKLVNAVLYGE---------PLKKLYLPNSKSNEFNVVGYKFGAK 58
           ESVE+IL+KYIPEDELK V  +L+G+         P+ +     + +N F V+  K  A+
Sbjct: 17  ESVESILEKYIPEDELKEVKRILFGQNRGTSVSVQPVNQEATDIANANNFQVLFSKILAE 76

Query: 59  PESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
            E  R PR+VR+GIIQN IG  T +  +  +  A  +++EK+I+AAG  GVNVLCLQE W
Sbjct: 77  KEQLRQPRIVRIGIIQNSIGAPT-NAPIHDQYMAIQNKIEKMIDAAGAMGVNVLCLQETW 135

Query: 119 RRP 121
             P
Sbjct: 136 HMP 138

Source: Dictyostelium fasciculatum

Species: Dictyostelium fasciculatum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|41054541|ref|NP_955910.1| beta-ureidopropionase [Danio rerio] gi|31419487|gb|AAH53204.1| Ureidopropionase, beta [Danio rerio] gi|182890556|gb|AAI64705.1| Upb1 protein [Danio rerio]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 6/120 (5%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK-----SNEFNVVGYKFGAKPES 61
           FES+E +L+ ++PE ELK    +L+G+ LKKL LP S        +F++ GY F A PE 
Sbjct: 6   FESLEKVLEAHLPEAELKEARRLLFGKELKKLDLPRSAIDAAGQQDFDLKGYVFEASPEQ 65

Query: 62  SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
            RPPR+VRVG+IQN I   T    V ++ +A + RV +++  A   GVN++C QEAW  P
Sbjct: 66  LRPPRMVRVGLIQNKIVLPT-DAPVLEQITALHKRVGEMVEVAAMCGVNIVCFQEAWTMP 124

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66821393|ref|XP_644181.1| hypothetical protein DDB_G0274123 [Dictyostelium discoideum AX4] gi|74866565|sp|Q964D8.1|BUP1_DICDI RecName: Full=Beta-ureidopropionase; AltName: Full=Beta-alanine synthase; AltName: Full=N-carbamoyl-beta-alanine amidohydrolase gi|14334061|gb|AAK60519.1|AF333186_1 beta-alanine synthase [Dictyostelium discoideum] gi|60472001|gb|EAL69954.1| hypothetical protein DDB_G0274123 [Dictyostelium discoideum AX4]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 10/124 (8%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYGE---------PLKKLYLPNSKSNEFNVVGYKFGA 57
           FESV+  L+KYIP +EL  V  +LYG          P+ +  L  +  N F +V  K  A
Sbjct: 5   FESVQATLEKYIPAEELSEVKRILYGYNRGHHVKSLPICQEALDLANKNNFEIVASKVEA 64

Query: 58  KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
            PE  R PR+VR+GIIQN IG  T +  +  +  A   ++EK+I+AAG  GVNVLCLQE 
Sbjct: 65  DPEQLRKPRIVRLGIIQNSIGAETTA-PIQDQYLAIEAKIEKMIDAAGAMGVNVLCLQET 123

Query: 118 WRRP 121
           W  P
Sbjct: 124 WHMP 127

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|241690472|ref|XP_002411765.1| beta-ureidopropionase, putative [Ixodes scapularis] gi|215504604|gb|EEC14098.1| beta-ureidopropionase, putative [Ixodes scapularis]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 6/126 (4%)

Query: 1   MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKL-----YLPNSKSNEFNVVGYKF 55
           M+  E FESVE IL++++P +E + V AVLYG     L      L  +K ++F + GYK 
Sbjct: 1   MAGQEEFESVEKILKEHLPAEEHEKVRAVLYGRDCSPLEFSSDALGQAKQHKFELKGYKM 60

Query: 56  GAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115
            A+ E  RP R+VRVG++QN I   T    V  +R A + R+E +++ A   GVN++C Q
Sbjct: 61  AAEREELRPARVVRVGLVQNKIVLPTTE-TVTAQREALHKRIETIVDTAALCGVNIICFQ 119

Query: 116 EAWRRP 121
           E W  P
Sbjct: 120 ETWHMP 125

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
ZFIN|ZDB-GENE-030131-1380	384	upb1 "ureidopropionase, beta"	0.856	0.309	0.436	5.5e-21
DICTYBASE|DDB_G0274123	391	pyd3 "Beta-ureidopropionase" [	0.820	0.291	0.443	7e-20
RGD|620091	393	Upb1 "ureidopropionase, beta"	0.848	0.300	0.387	5.8e-19
FB|FBgn0037513	386	pyd3 "pyd3" [Drosophila melano	0.856	0.308	0.417	6.9e-19
UNIPROTKB|E1BU99	383	UPB1 "Uncharacterized protein"	0.812	0.295	0.403	1.1e-18
MGI|MGI:2143535	393	Upb1 "ureidopropionase, beta"	0.848	0.300	0.379	3.6e-18
UNIPROTKB|E2QT84	384	UPB1 "Uncharacterized protein"	0.848	0.307	0.370	2e-17
UNIPROTKB|Q6AHZ8	186	DKFZp779O1248 "Beta-ureidoprop	0.848	0.634	0.376	6.7e-17
UNIPROTKB|Q9UBR1	384	UPB1 "Beta-ureidopropionase" [	0.848	0.307	0.370	7.3e-17
UNIPROTKB|A7MBE8	384	UPB1 "Uncharacterized protein"	0.848	0.307	0.379	2.1e-16

ZFIN|ZDB-GENE-030131-1380 upb1 "ureidopropionase, beta" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 55/126 (43%), Positives = 78/126 (61%)

Query:     1 MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK-----SNEFNVVGYKF 55
             MS  + FES+E +L+ ++PE ELK    +L+G+ LKKL LP S        +F++ GY F
Sbjct:     1 MSGKD-FESLEKVLEAHLPEAELKEARRLLFGKELKKLDLPRSAIDAAGQQDFDLKGYVF 59

Query:    56 GAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115
              A PE  RPPR+VRVG+IQN I   T    V ++ +A + RV +++  A   GVN++C Q
Sbjct:    60 EASPEQLRPPRMVRVGLIQNKIVLPT-DAPVLEQITALHKRVGEMVEVAAMCGVNIVCFQ 118

Query:   116 EAWRRP 121
             EAW  P
Sbjct:   119 EAWTMP 124

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

DICTYBASE|DDB_G0274123 pyd3 "Beta-ureidopropionase" [Dictyostelium discoideum (taxid:44689)]

 Score = 239 (89.2 bits), Expect = 7.0e-20, P = 7.0e-20
 Identities = 55/124 (44%), Positives = 72/124 (58%)

Query:     7 FESVETILQKYIPEDELKLVNAVLYGE---------PLKKLYLPNSKSNEFNVVGYKFGA 57
             FESV+  L+KYIP +EL  V  +LYG          P+ +  L  +  N F +V  K  A
Sbjct:     5 FESVQATLEKYIPAEELSEVKRILYGYNRGHHVKSLPICQEALDLANKNNFEIVASKVEA 64

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
              PE  R PR+VR+GIIQN IG  T +  +  +  A   ++EK+I+AAG  GVNVLCLQE 
Sbjct:    65 DPEQLRKPRIVRLGIIQNSIGAETTA-PIQDQYLAIEAKIEKMIDAAGAMGVNVLCLQET 123

Query:   118 WRRP 121
             W  P
Sbjct:   124 WHMP 127

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|620091 Upb1 "ureidopropionase, beta" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 5.8e-19, P = 5.8e-19
 Identities = 48/124 (38%), Positives = 72/124 (58%)

Query:     3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
             A   ++S+E  L+K++P D+L  V  +LYG+  + L LP      +    F + GY FGA
Sbjct:     2 AGPEWQSLEQCLEKHLPPDDLSQVKRILYGKQTRNLDLPRKALEAASERNFELKGYAFGA 61

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
               E  R P++VRVG++QN I   T S  V ++ SA + R+E++   A   GVN++C QEA
Sbjct:    62 AKEQQRCPQIVRVGLVQNRIPLPT-SAPVAEQVSALHKRIEEIAEVAAMCGVNIICFQEA 120

Query:   118 WRRP 121
             W  P
Sbjct:   121 WNMP 124

GO:0003837 "beta-ureidopropionase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009790 "embryo development" evidence=IEP

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0019482 "beta-alanine metabolic process" evidence=IDA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA;TAS

FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 6.9e-19, P = 6.9e-19
 Identities = 53/127 (41%), Positives = 80/127 (62%)

Query:     1 MSADEPFESVETILQKYIPEDELKLVNAVLYG-EPLKKLYLPNS-----KSNEFNVVGYK 54
             MSA E  +++   L+K++P DELK V  +LYG E  + L LP S     + N F++ GY+
Sbjct:     1 MSAFE-LKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYR 59

Query:    55 FGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114
             F A+ E +R  R+VRVG IQN I   T +  + ++R A +++V+ +I AA E+G N++C 
Sbjct:    60 FTAREEQTRKRRIVRVGAIQNSIVIPTTA-PIEKQREAIWNKVKTMIKAAAEAGCNIVCT 118

Query:   115 QEAWRRP 121
             QEAW  P
Sbjct:   119 QEAWTMP 125

GO:0003837 "beta-ureidopropionase activity" evidence=ISS;IDA;NAS

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IGI

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IC

UNIPROTKB|E1BU99 UPB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 48/119 (40%), Positives = 72/119 (60%)

Query:     8 ESVETILQKYIPEDELKLVNAVLYGEPLKKLYLP-----NSKSNEFNVVGYKFGAKPESS 62
             ES+E  L++YIP  +L  V  +LYG   +KL LP     +++  +F + GY F A PE  
Sbjct:     6 ESLELCLERYIPPQDLAEVKRILYGGETRKLSLPVAALSSAQERDFELQGYGFDAAPEQL 65

Query:    63 RPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
             R PR+VRVG++QN I   T +  V  + +A + R+E+++  A   GVN++C QEAW  P
Sbjct:    66 RRPRIVRVGLVQNKIPLPTDTA-VAVQVAALHRRIEEIVEVAAMCGVNIICFQEAWTMP 123

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

MGI|MGI:2143535 Upb1 "ureidopropionase, beta" [Mus musculus (taxid:10090)]

 Score = 224 (83.9 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 47/124 (37%), Positives = 71/124 (57%)

Query:     3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
             A   ++S+E  L+K++P D+L  V  +LYG+  + L LP      +    F + GY FGA
Sbjct:     2 AGPEWQSLEQCLEKHLPPDDLAQVKRILYGKQTRNLDLPREALKAASERNFELKGYAFGA 61

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
               E  R P++VRVG++QN I   T S  V ++ SA +  +E++   A   GVN++C QEA
Sbjct:    62 AKEQQRCPQIVRVGLVQNRIPLPT-SAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEA 120

Query:   118 WRRP 121
             W  P
Sbjct:   121 WNMP 124

GO:0003824 "catalytic activity" evidence=IEA

GO:0003837 "beta-ureidopropionase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0019482 "beta-alanine metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2QT84 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/124 (37%), Positives = 71/124 (57%)

Query:     3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
             A   +ES+E  L+K++P  +L+ V  +LYG+  +KL LP+     +   +F + GY F A
Sbjct:     2 AGSEWESLEQCLEKHLPPADLREVKRILYGKETRKLDLPSRAFEAALEGDFELQGYAFEA 61

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
               E  RPPR VRVG++QN          V ++ +A + R+E ++  A   GVN++C QEA
Sbjct:    62 AEEQLRPPRTVRVGLVQNKTP-LPADAPVAKQVTALHRRIEAIVEVAAVCGVNIICFQEA 120

Query:   118 WRRP 121
             W  P
Sbjct:   121 WTMP 124

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|Q6AHZ8 DKFZp779O1248 "Beta-ureidopropionase" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 47/125 (37%), Positives = 73/125 (58%)

Query:     3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
             A   ++S+E  L+K++P  +L+ V  VLYG+ L+KL LP      +   +F + GY F A
Sbjct:     2 AGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEA 61

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
               E  R PR+V VG++QN I     +  V ++ SA + R++ ++  A   GVN++C QEA
Sbjct:    62 AEEQLRRPRIVHVGLVQNRIP-LPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEA 120

Query:   118 W-RRP 121
             W  RP
Sbjct:   121 WILRP 125

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

UNIPROTKB|Q9UBR1 UPB1 "Beta-ureidopropionase" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 7.3e-17, P = 7.3e-17
 Identities = 46/124 (37%), Positives = 72/124 (58%)

Query:     3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
             A   ++S+E  L+K++P  +L+ V  VLYG+ L+KL LP      +   +F + GY F A
Sbjct:     2 AGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEA 61

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
               E  R PR+V VG++QN I     +  V ++ SA + R++ ++  A   GVN++C QEA
Sbjct:    62 AEEQLRRPRIVHVGLVQNRIP-LPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEA 120

Query:   118 WRRP 121
             W  P
Sbjct:   121 WTMP 124

GO:0046872 "metal ion binding" evidence=IEA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0003837 "beta-ureidopropionase activity" evidence=EXP

GO:0005829 "cytosol" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|A7MBE8 UPB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 47/124 (37%), Positives = 69/124 (55%)

Query:     3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNS-----KSNEFNVVGYKFGA 57
             A   FES+E  L+K++P  EL+ V  +LYG+  +KL LP +        +F + GY F A
Sbjct:     2 AGSGFESLEQCLEKHLPLAELQEVKRLLYGKETRKLDLPGAALEAASRGDFELQGYAFEA 61

Query:    58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
               E  R PR VRVG++QN          V ++ +A + R+E ++  A   GVN++C QEA
Sbjct:    62 AAEQQRRPRTVRVGLVQNRTP-LPADTPVVKQVTALHRRMEAVVEVAAMCGVNIICFQEA 120

Query:   118 WRRP 121
             W  P
Sbjct:   121 WTMP 124

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
cd07587	363	cd07587, ML_beta-AS, mammalian-like beta-alanine s	3e-38
PLN00202	405	PLN00202, PLN00202, beta-ureidopropionase	3e-28
cd07568	287	cd07568, ML_beta-AS_like, mammalian-like beta-alan	8e-08

>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score =  132 bits (333), Expect = 3e-38
 Identities = 57/117 (48%), Positives = 81/117 (69%), Gaps = 6/117 (5%)

Query: 10  VETILQKYIPEDELKLVNAVLYGEPLKKLYLPNS-----KSNEFNVVGYKFGAKPESSRP 64
           +E +L+K++P +ELK V  +LYGE +K L LP S     K N+F + GYKF A PE +RP
Sbjct: 1   LEDLLEKHLPPEELKEVKRILYGEEVKPLELPESALDLAKENDFELKGYKFEAAPEQTRP 60

Query: 65  PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
           PR+VRVG+IQN I   T +  + ++R A +DR++K+I AA  +GVN++C QEAW  P
Sbjct: 61  PRIVRVGLIQNKIVLPT-TAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMP 116

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 363

>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase

 Score =  106 bits (266), Expect = 3e-28
 Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 10/124 (8%)

Query: 7   FESVETILQKYIPEDELKLVNAVLYG----EPLKKLYLPN-----SKSNEFNVVGYKFGA 57
           +ES+  +L   +P +  + V+ +L G     P++ + LP      SK+++F++  ++F A
Sbjct: 17  YESLHRLLSANLPPELFQEVSRLLLGLNCGRPVEMIALPEAAKALSKAHDFDLQAFRFTA 76

Query: 58  KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
             E  R PR+VRVG+IQN I   T +    Q+R A  D+V+ +I+AAG +GVN+LCLQEA
Sbjct: 77  DKEQLRAPRVVRVGLIQNSIALPTTAPFADQKR-AIMDKVKPMIDAAGAAGVNILCLQEA 135

Query: 118 WRRP 121
           W  P
Sbjct: 136 WTMP 139

Length = 405

>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 66  RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
           R+VRVG+IQ      T    + +++ A   +   +I  A E+G  ++CLQE +  P
Sbjct: 2   RIVRVGLIQASNVIPT-DAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGP 56

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0808|consensus	387		100.0
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	100.0
PLN00202	405	beta-ureidopropionase	100.0
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	99.17
COG0388	274	Predicted amidohydrolase [General function predict	98.95
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	98.95
PLN02747	296	N-carbamolyputrescine amidase	98.94
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	98.79
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	98.76
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	98.73
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	98.73
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	98.73
PLN02504	346	nitrilase	98.72
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	98.72
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	98.7
PRK10438	256	C-N hydrolase family amidase; Provisional	98.7
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	98.67
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	98.67
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	98.62
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	98.6
PLN02798	286	nitrilase	98.57
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	98.56
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	98.56
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	98.56
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	98.56
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	98.55
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	98.54
PRK02628	679	nadE NAD synthetase; Reviewed	98.52
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	98.49
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	98.49
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	98.49
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	98.43
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	98.42
PRK13981	540	NAD synthetase; Provisional	98.4
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	98.33
PRK13287	333	amiF formamidase; Provisional	98.32
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	98.32
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	98.31
PRK13286	345	amiE acylamide amidohydrolase; Provisional	98.17
KOG0806|consensus	298		98.14
KOG0805|consensus	337		97.89
KOG0807|consensus	295		97.84
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	97.14
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	97.03
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	96.98
PRK13825	388	conjugal transfer protein TraB; Provisional	89.8
PF03372	249	Exo_endo_phos: Endonuclease/Exonuclease/phosphatas	80.63

>KOG0808|consensus

Probab=100.00  E-value=1.9e-48  Score=329.43  Aligned_cols=128  Identities=39%  Similarity=0.682  Sum_probs=124.9

Q ss_pred             CCCCCCcchHHHHHHcCCChHHHHHHHHHHhCCCCccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEec
Q psy3318           1 MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQN   75 (139)
Q Consensus         1 m~~~~~~~sle~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~   75 (139)
                      |+. ++|.|||++|++||++..|+||+|+|||+++++|+||++|     ++||+||||.|+|++||+|.||.||||+|||
T Consensus         3 ~a~-a~~dsle~~l~~~l~~~~lqev~r~lygr~lr~l~lp~~a~~las~~df~lqgy~f~a~keq~r~pr~vrvgliqn   81 (387)
T KOG0808|consen    3 GAI-AGYDSLEQLLSANLKPELLQEVNRLLYGRSLRQLVLPESAKALASKHDFDLQGYSFSADKEQMRNPRVVRVGLIQN   81 (387)
T ss_pred             Ccc-cccchHHHHHHhcCChHHHHHHHHHHhCCchhhhcCchHHHHhhcccCcceeeeeeccchhhhcCCcEEEEeeecc
Confidence            445 7999999999999999999999999999999999999999     8999999999999999999999999999999


Q ss_pred             ccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhhh
Q psy3318          76 HIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYL  130 (139)
Q Consensus        76 si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed~  130 (139)
                      +|..||+ +||.+|+.++++|++.+|++||.+|||||||||+|+|||||||||.+
T Consensus        82 ~i~lptt-apv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerl  135 (387)
T KOG0808|consen   82 SIALPTT-APVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERL  135 (387)
T ss_pred             cccCCCC-CcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccC
Confidence            9999999 99999999999999999999999999999999999999999999976

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=1.3e-38  Score=271.16  Aligned_cols=118  Identities=47%  Similarity=0.841  Sum_probs=114.0

Q ss_pred             HHHHHHcCCChHHHHHHHHHHhCCCCccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEecccCCCCCCC
Q psy3318          10 VETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSC   84 (139)
Q Consensus        10 le~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~a   84 (139)
                      ||++|++|||+++|+||+|||||+++++|+||+++     ++||||+||+|+|++||+|+||.||||+||+.+..+|+ +
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIAlvQ~~~~~~~~-~   79 (363)
T cd07587           1 LEDLLEKHLPPEELKEVKRILYGEEVKPLELPESALDLAKENDFELKGYKFEAAPEQTRPPRIVRVGLIQNKIVLPTT-A   79 (363)
T ss_pred             ChhHHhhhCCHHHHHHHHHHHcCCCCccCCCCHHHHHHHHhcCceEEEeecCCChhhcCCCceEEEEEEecccccccc-C
Confidence            68999999999999999999999999999999998     89999999999999999999999999999999988877 8


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchh
Q psy3318          85 NVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQV  128 (139)
Q Consensus        85 pv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~E  128 (139)
                      |+..|+++|++|+..+|++|+++||+||||||+|.+||.||+++
T Consensus        80 p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~  123 (363)
T cd07587          80 PIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTRE  123 (363)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccc
Confidence            99999999999999999999999999999999999999999764

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PLN00202 beta-ureidopropionase

Probab=100.00  E-value=5.6e-34  Score=246.71  Aligned_cols=123  Identities=36%  Similarity=0.693  Sum_probs=117.4

Q ss_pred             CcchHHHHHHcCCChHHHHHHHHHHhC----CCCccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEecc
Q psy3318           6 PFESVETILQKYIPEDELKLVNAVLYG----EPLKKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQNH   76 (139)
Q Consensus         6 ~~~sle~~l~~~lp~~~l~ev~riLyG----~~~~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~s   76 (139)
                      +|+|||++|++|||+++|+||+|||||    +++++|+||..+     ..+|++++|.|.+.+||||+++.+|||+||+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rValiQ~~   95 (405)
T PLN00202         16 GYESLHRLLSANLPPELFQEVSRLLLGLNCGRPVEMIALPEAAKALSKAHDFDLQAFRFTADKEQLRAPRVVRVGLIQNS   95 (405)
T ss_pred             hhhhHHHHHHhhCCHHHHHHHHHHHhCcccCCccccCCCCHHHHHHHHhcCceEEEeeecCCHhHcCCCCeEEEEEEecc
Confidence            499999999999999999999999999    899999999888     88999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhh
Q psy3318          77 IGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVY  129 (139)
Q Consensus        77 i~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed  129 (139)
                      +..+++ .|+..++++|++++..+|++|+..||+||||||+|++||.||+++.
T Consensus        96 i~~~~~-~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~  147 (405)
T PLN00202         96 IALPTT-APFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREK  147 (405)
T ss_pred             cccCCC-CcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccc
Confidence            988888 8999999999999999999999999999999999999999988643

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.17  E-value=6e-11  Score=95.62  Aligned_cols=61  Identities=30%  Similarity=0.519  Sum_probs=52.8

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~  127 (139)
                      .|.+|||++|+.+..+.+ .|+..++++|++++.++|++|++.||+||||||+|.+|| ||..
T Consensus         1 ~~~~rva~vQ~~~~~~~~-~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~-~~~~   61 (287)
T cd07568           1 SRIVRVGLIQASNVIPTD-APIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPY-FCAE   61 (287)
T ss_pred             CceEEEEEEEeecccccc-cccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCC-Cccc
Confidence            367999999999764443 455678999999999999999999999999999999999 8754

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=98.95  E-value=1.3e-09  Score=87.49  Aligned_cols=52  Identities=17%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~  127 (139)
                      .+||+++|+..        ...++.+|++++.++|++|++.||+||+|||+|.++| +|..
T Consensus         2 ~~rvA~~Q~~~--------~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy-~~~~   53 (274)
T COG0388           2 MMRVAAAQMAP--------KAGDPAENLARILRLIREAAARGADLVVFPELFLTGY-PCED   53 (274)
T ss_pred             ceEEEEEEecC--------CCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCC-Cccc
Confidence            58999999963        3345789999999999999999999999999999999 8874

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=98.95  E-value=1.2e-09  Score=87.14  Aligned_cols=50  Identities=22%  Similarity=0.409  Sum_probs=44.6

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~  127 (139)
                      +|||++|+...         .++++|++++.++|++|++.||+||||||+|.++| +|..
T Consensus         1 ~~ia~~Q~~~~---------~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy-~~~~   50 (279)
T TIGR03381         1 VTVAALQMACS---------DDVETNIARAERLVREAAARGAQIILLPELFEGPY-FCKD   50 (279)
T ss_pred             CEEEEEEeecc---------CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCC-cCCc
Confidence            68999999653         35889999999999999999999999999999999 7753

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>PLN02747 N-carbamolyputrescine amidase

Probab=98.94  E-value=2.1e-09  Score=87.58  Aligned_cols=52  Identities=27%  Similarity=0.406  Sum_probs=46.5

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      .|.+|||++|+.+.         .+.++|++++.++|++|++.||+||||||+|.++| +|.
T Consensus         4 ~~~~~va~~Q~~~~---------~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~-~~~   55 (296)
T PLN02747          4 GRKVVVAALQFACS---------DDRAANVDKAERLVREAHAKGANIILIQELFEGYY-FCQ   55 (296)
T ss_pred             CcceEEEEEEecCC---------CCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCC-Ccc
Confidence            45699999999753         24889999999999999999999999999999999 886

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=98.79  E-value=9.5e-09  Score=84.30  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=43.2

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      |.+|||++|+....      ...++++|++++.++|++|++.||+||||||+|.+.|
T Consensus         2 ~~~rva~~Q~~~~~------~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~   52 (302)
T cd07569           2 RQVILAAAQMGPIA------RAETRESVVARLIALLEEAASRGAQLVVFPELALTTF   52 (302)
T ss_pred             ceEEEEEEeecccc------ccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCc
Confidence            46899999995421      1125889999999999999999999999999999887

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=98.76  E-value=1.3e-08  Score=84.74  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=44.1

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh----CCCeEEEccccccCCCCCCch
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE----SGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~----~GanIICLQElf~~PyaFCt~  127 (139)
                      |||++|+.+        ...++++|++++.++|++|++    .||+||||||+|.++|.|+..
T Consensus         1 rIA~vQ~~~--------~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~   55 (295)
T cd07566           1 RIACLQLNP--------QIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSL   55 (295)
T ss_pred             CEEEEECCC--------ccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccH
Confidence            699999963        234688999999999999998    899999999999999966643

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>cd07576 R-amidase_like Pseudomonas sp

Probab=98.73  E-value=2e-08  Score=78.98  Aligned_cols=48  Identities=17%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      |||++|..+        ...+.++|++++.++|++|+++||+||||||+|.+.| .+
T Consensus         1 kva~~Q~~~--------~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~-~~   48 (254)
T cd07576           1 RLALYQGPA--------RDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGY-NI   48 (254)
T ss_pred             CEEEEecCC--------CCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCC-CC
Confidence            799999965        2345889999999999999999999999999999988 54

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=98.73  E-value=1.9e-08  Score=82.45  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      +||+++|+.+        ...++++|++++.++|+.|+++||+||||||+|.+.|
T Consensus         1 ~kia~~Q~~~--------~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy   47 (297)
T cd07564           1 VKVAAVQAAP--------VFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGY   47 (297)
T ss_pred             CEEEEEecCc--------ccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCC
Confidence            5899999953        3346889999999999999999999999999999988

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=98.73  E-value=2.4e-08  Score=80.13  Aligned_cols=50  Identities=26%  Similarity=0.553  Sum_probs=44.8

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~  127 (139)
                      +|||++|+.+.         .+.+.|++++.++|++|++.||+||+|||+|.++| ||..
T Consensus         1 ~~ia~~Q~~~~---------~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~-~~~~   50 (284)
T cd07573           1 VTVALVQMACS---------EDPEANLAKAEELVREAAAQGAQIVCLQELFETPY-FCQE   50 (284)
T ss_pred             CEEEEEEeecc---------CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCC-Cccc
Confidence            58999999753         34789999999999999999999999999999999 8864

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>PLN02504 nitrilase

Probab=98.72  E-value=2.1e-08  Score=85.37  Aligned_cols=48  Identities=27%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      .+|||++|+.+.        ..++++|++++.++|++|++.||+||||||+|.+.|
T Consensus        24 ~~kiAlvQ~~~~--------~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGy   71 (346)
T PLN02504         24 TVRATVVQASTV--------FYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGY   71 (346)
T ss_pred             ceEEEEEEcCcc--------cCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccC
Confidence            489999999643        335789999999999999999999999999999877

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=98.72  E-value=2e-08  Score=79.62  Aligned_cols=48  Identities=13%  Similarity=0.124  Sum_probs=42.5

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      |||++|+.+.        ..+.++|++++.++|++|++.||+||||||+|.+.| ++
T Consensus         1 ria~~Q~~~~--------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy-~~   48 (261)
T cd07570           1 RIALAQLNPT--------VGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGY-PP   48 (261)
T ss_pred             CEEEEeCCCc--------CCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCC-Ch
Confidence            6999999642        235889999999999999999999999999999998 55

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.70  E-value=2.8e-08  Score=79.23  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR  123 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya  123 (139)
                      +|||++|...        +..+.++|++++.++|++|++.||+||||||+|.+.|.
T Consensus         1 ~ria~~Q~~~--------~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~   48 (258)
T cd07578           1 YKAAAIQFEP--------EMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYC   48 (258)
T ss_pred             CeEEEEEecC--------ccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCC
Confidence            5899999953        33467899999999999999999999999999999883

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=98.70  E-value=2.6e-08  Score=80.29  Aligned_cols=48  Identities=15%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR  123 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya  123 (139)
                      +++|||++|+..        +..++++|++++.++|++|  .||+||||||+|.+.|.
T Consensus         2 ~~mkia~~Q~~~--------~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~   49 (256)
T PRK10438          2 SGLKITLLQQPL--------VWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFA   49 (256)
T ss_pred             CCCEEEEEEecC--------ccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCc
Confidence            358999999954        3345889999999999986  69999999999999883

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=98.67  E-value=2.2e-08  Score=80.38  Aligned_cols=48  Identities=21%  Similarity=0.197  Sum_probs=41.8

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      +|||++|..+..+       .++++|+++++.+|++|++.||+||||||+|.++|
T Consensus         1 m~va~~Q~~~~~~-------~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~   48 (280)
T cd07574           1 VRVAAAQYPLRRY-------ASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMEL   48 (280)
T ss_pred             CeeEEEEccCcCC-------CCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHH
Confidence            6899999975322       34789999999999999999999999999999875

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=98.67  E-value=3.9e-08  Score=77.80  Aligned_cols=47  Identities=28%  Similarity=0.452  Sum_probs=42.4

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      |||++|+.+.         .+.++|++++.++|+.|++.||+||||||+|.++| +|
T Consensus         1 kia~~Q~~~~---------~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~-~~   47 (265)
T cd07572           1 RVALIQMTST---------ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPG-GT   47 (265)
T ss_pred             CEEEEEeeCC---------CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcC-cc
Confidence            6999999753         35889999999999999999999999999999999 55

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.62  E-value=6.2e-08  Score=77.16  Aligned_cols=49  Identities=20%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      |||++|+..        ...+.+.|++++.++|++|+++||+||||||+|.+.| .|.
T Consensus         1 kia~~q~~~--------~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~-~~~   49 (269)
T cd07586           1 RVAIAQIDP--------VLGDVEENLEKHLEIIETARERGADLVVFPELSLTGY-NLG   49 (269)
T ss_pred             CEEEEecCC--------ccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCC-Cch
Confidence            699999953        2246889999999999999999999999999999988 664

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=98.60  E-value=9.3e-08  Score=71.60  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR  123 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya  123 (139)
                      |||++|..+      ..+..+.++|++++.+++++|+.+|++||||||+|.++|.
T Consensus         1 ~VA~~Q~~~------~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~   49 (186)
T PF00795_consen    1 RVALVQLNI------DQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYP   49 (186)
T ss_dssp             EEEEEEB-B-------SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-
T ss_pred             CEEEEECCc------cCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccc
Confidence            799999854      1256689999999999999999999999999999999983

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>PLN02798 nitrilase

Probab=98.57  E-value=8.8e-08  Score=78.04  Aligned_cols=49  Identities=22%  Similarity=0.318  Sum_probs=41.5

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      ++.+||+++|+.+.         .+.+.|++++.++|++|++.||+||||||+|...+
T Consensus         8 ~~~~ria~~Q~~~~---------~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g   56 (286)
T PLN02798          8 GSSVRVAVAQMTST---------NDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIG   56 (286)
T ss_pred             cCccEEEEEEccCC---------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccC
Confidence            35699999998642         24789999999999999999999999999986443

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.56  E-value=1.1e-07  Score=75.49  Aligned_cols=49  Identities=12%  Similarity=0.249  Sum_probs=42.7

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      |||++|+.+.        ..+.+.|++++..+|++|++.||+||||||+|.+.| +|.
T Consensus         1 ~ia~~Q~~~~--------~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~-~~~   49 (261)
T cd07585           1 RIALVQFEAR--------VGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGY-THV   49 (261)
T ss_pred             CEEEEEeecC--------CCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccc-cCC
Confidence            6999999752        235889999999999999999999999999999888 653

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.56  E-value=1.3e-07  Score=75.53  Aligned_cols=47  Identities=26%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR  123 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya  123 (139)
                      |||++|..+        ...+.++|++++.+++++|+++|++||||||+|.+.|.
T Consensus         1 ria~~Q~~~--------~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~   47 (268)
T cd07580           1 RVACVQFDP--------RVGDLDANLARSIELIREAADAGANLVVLPELANTGYV   47 (268)
T ss_pred             CEEEEEccC--------ccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCC
Confidence            699999964        23468899999999999999999999999999999883

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.56  E-value=1.3e-07  Score=74.73  Aligned_cols=50  Identities=28%  Similarity=0.479  Sum_probs=43.7

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~  127 (139)
                      |||++|..+.        ..+.++|++++.++|++|++.|++||||||+|.+.| ++..
T Consensus         1 rva~~Q~~~~--------~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~-~~~~   50 (253)
T cd07583           1 KIALIQLDIV--------WGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGY-FLDD   50 (253)
T ss_pred             CEEEEEeecC--------cCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCC-Chhh
Confidence            6999999753        235889999999999999999999999999999999 6644

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=98.56  E-value=1.1e-07  Score=88.31  Aligned_cols=52  Identities=15%  Similarity=0.045  Sum_probs=45.7

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      +.+|||++|...        ...|.++|.+++.+.|++|+++||+||||||+|.++| .|.
T Consensus         2 ~~mrIAlaQl~~--------~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY-~~~   53 (700)
T PLN02339          2 RLLKVATCNLNQ--------WAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGY-GCE   53 (700)
T ss_pred             ceEEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCC-ChH
Confidence            368999999953        3345889999999999999999999999999999999 773

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.55  E-value=1.2e-07  Score=75.47  Aligned_cols=47  Identities=17%  Similarity=0.271  Sum_probs=41.5

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR  123 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya  123 (139)
                      +||+++|..+.        ..+.+.|++++.++|++|++ ||+||||||+|.+.|.
T Consensus         1 mkia~~Q~~~~--------~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~   47 (252)
T cd07575           1 LKIALIQTDLV--------WEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFS   47 (252)
T ss_pred             CEEEEEEeecC--------cCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCC
Confidence            68999999753        23588999999999999998 9999999999999993

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.54  E-value=1.3e-07  Score=77.62  Aligned_cols=45  Identities=13%  Similarity=0.185  Sum_probs=40.7

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      |||++|+.+..         ++++|++++.++|++|++.||+||||||+|.+.|
T Consensus         1 ria~~Q~~~~~---------d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~   45 (279)
T cd07579           1 RIAVAQFAPTP---------DIAGNLATIDRLAAEAKATGAELVVFPELALTGL   45 (279)
T ss_pred             CEEEEeccCcc---------CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCC
Confidence            69999996532         5889999999999999999999999999999888

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK02628 nadE NAD synthetase; Reviewed

Probab=98.52  E-value=1.6e-07  Score=86.39  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             CCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318          63 RPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        63 R~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~  127 (139)
                      ..-+.+|||++|..+        ...+.++|++++.++|++|+++||+||||||+|.+.| .|..
T Consensus         8 ~~~~~mrIAlaQ~~~--------~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY-~~~d   63 (679)
T PRK02628          8 YRHGFVRVAAATPKV--------RVADPAFNAARILALARRAADDGVALAVFPELSLSGY-SCDD   63 (679)
T ss_pred             hhCCcEEEEEEeCCc--------ccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCC-Ccch
Confidence            334679999999964        3346889999999999999999999999999999999 7753

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.49  E-value=2.3e-07  Score=73.49  Aligned_cols=46  Identities=22%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      |||++|...        ...+.++|++++.++|++|++.||+||||||+|.+.|
T Consensus         1 ria~~q~~~--------~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~   46 (258)
T cd07584           1 KVALIQMDS--------VLGDVKANLKKAAELCKEAAAEGADLICFPELATTGY   46 (258)
T ss_pred             CEEEEEecC--------ccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCC
Confidence            699999953        3346899999999999999999999999999999888

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=98.49  E-value=2.4e-07  Score=76.52  Aligned_cols=53  Identities=15%  Similarity=0.297  Sum_probs=43.6

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPDRY  124 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~PyaF  124 (139)
                      |+||++|+.+..-    .+..++++|++++.++|++|++  .||+||||||+|.+.|.|
T Consensus         1 ~~Ia~~Q~~~~~~----~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~   55 (291)
T cd07565           1 VGVAVVQYKVPVL----HTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMY   55 (291)
T ss_pred             CeEEEEecccccc----cccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCC
Confidence            6899999975210    1345799999999999999997  599999999999998844

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=98.49  E-value=2.7e-07  Score=77.50  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=45.1

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY  124 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF  124 (139)
                      .|+++||++..+... ..-..++++|++++.++|++|++.||+||||||+|.+.|.+
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~   56 (299)
T cd07567           1 YIAAVVEHHPILSPD-PDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIF   56 (299)
T ss_pred             CEEEEEEEEeeccCC-ccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCC
Confidence            378999998655421 11234569999999999999999999999999999999843

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=98.43  E-value=3.8e-07  Score=74.09  Aligned_cols=53  Identities=25%  Similarity=0.326  Sum_probs=45.1

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      +||+++|+.+...+. - ..++.++|++++.++|+.|++.|++||||||++...|
T Consensus         1 ~~ia~~Q~~~~~~~~-~-~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~   53 (270)
T cd07571           1 LRVALVQGNIPQDEK-W-DPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFD   53 (270)
T ss_pred             CeEEEEeCCCCcccc-c-CHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcc
Confidence            689999998755432 2 2568899999999999999999999999999998766

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.42  E-value=3.7e-07  Score=72.00  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             EEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          70 VGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        70 VGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      ||++|+...         .+.++|++++.++|++|++.||+||||||+|.+.| .+
T Consensus         1 ia~~Q~~~~---------~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~-~~   46 (255)
T cd07581           1 VALAQFASS---------GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARF-GD   46 (255)
T ss_pred             CEEEEeeCC---------CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCC-Cc
Confidence            689999653         35889999999999999999999999999999877 44

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13981 NAD synthetase; Provisional

Probab=98.40  E-value=4.3e-07  Score=80.79  Aligned_cols=49  Identities=12%  Similarity=0.165  Sum_probs=43.7

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      +||+++|+..        ...+.+.|++++.++|++|+..||+||||||+|.+.| +|
T Consensus         1 mkIAl~Q~~~--------~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy-~~   49 (540)
T PRK13981          1 LRIALAQLNP--------TVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGY-PP   49 (540)
T ss_pred             CEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCC-Ch
Confidence            6899999953        3456889999999999999999999999999999988 65

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.33  E-value=1.3e-06  Score=71.48  Aligned_cols=52  Identities=19%  Similarity=0.078  Sum_probs=44.5

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh-----CCCeEEEccccccCCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE-----SGVNVLCLQEAWRRPDRY  124 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~-----~GanIICLQElf~~PyaF  124 (139)
                      ++..+|..+..    +++..++++|++++.++|++|++     +||+||||||+|.+.|.+
T Consensus         2 ~~~~~~~~~~~----~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~   58 (294)
T cd07582           2 TALALQPTCEA----AEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPM   58 (294)
T ss_pred             eeEEEeccccc----ccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCc
Confidence            46788887644    45688999999999999999998     489999999999999944

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13287 amiF formamidase; Provisional

Probab=98.32  E-value=1.4e-06  Score=74.00  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhC--CCeEEEccccccCCC
Q psy3318          64 PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGES--GVNVLCLQEAWRRPD  122 (139)
Q Consensus        64 ~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~--GanIICLQElf~~Py  122 (139)
                      .+..||||+||+.+...    ....+.++|++++.++|+.|++.  ||+||||||+|.+.|
T Consensus        10 ~~~~l~VAlvQ~~~~~~----~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~   66 (333)
T PRK13287         10 PIEGVLVALIQYPVPVV----ESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGL   66 (333)
T ss_pred             CCCceEEEEEEcccccC----CchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccC
Confidence            34569999999975321    12457999999999999999974  999999999999877

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=98.32  E-value=1.1e-06  Score=68.22  Aligned_cols=47  Identities=19%  Similarity=0.290  Sum_probs=41.0

Q ss_pred             EEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318          70 VGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY  124 (139)
Q Consensus        70 VGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF  124 (139)
                      ||++|+.+.        ..+.++|++++..+|++|+++|++||||||+|.+.|.+
T Consensus         1 ia~~Q~~~~--------~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~   47 (253)
T cd07197           1 IAAVQLAPK--------IGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSF   47 (253)
T ss_pred             CEEEEccCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCcc
Confidence            689999653        24688999999999999999999999999999988844

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.31  E-value=9.3e-07  Score=70.36  Aligned_cols=46  Identities=22%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      |||++|+..        ...|+++|++++.++|+.|+   |+||||||+|.+.|.|.
T Consensus         1 kia~~Q~~~--------~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~   46 (259)
T cd07577           1 KVGYVQFNP--------KFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFT   46 (259)
T ss_pred             CEEEEEccC--------ccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcC
Confidence            699999963        23468899999999999884   99999999999999554

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=98.17  E-value=5.1e-06  Score=71.22  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHH--hCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAG--ESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA--~~GanIICLQElf~~PyaFCt  126 (139)
                      +..|+||+||......    -...+..+|++++.++|+.|+  ..|++||||||+|.+.|.|+.
T Consensus        10 ~~~l~va~vQ~~~p~~----~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~   69 (345)
T PRK13286         10 NDTVGVAVVNYKMPRL----HTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR   69 (345)
T ss_pred             CCceEEEEEEcCCCcc----CCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh
Confidence            4469999999964322    123689999999999999987  459999999999999876654

>KOG0806|consensus

Probab=98.14  E-value=4.4e-06  Score=71.62  Aligned_cols=53  Identities=11%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             CCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318          64 PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY  124 (139)
Q Consensus        64 ~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF  124 (139)
                      .....++|+||.....        ..+.+|+++.+..|++|++.||+||+|||.|+.||.|
T Consensus        10 ~~~~~~~a~vq~~~~l--------~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~   62 (298)
T KOG0806|consen   10 ILPNATEALVSLEEAL--------LLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNF   62 (298)
T ss_pred             cccccceeeeecccch--------hhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccc
Confidence            3445799999996544        3588999999999999999999999999999999977

>KOG0805|consensus

Probab=97.89  E-value=2.1e-05  Score=67.34  Aligned_cols=51  Identities=29%  Similarity=0.388  Sum_probs=44.1

Q ss_pred             CCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          64 PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        64 ~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      ++.++||+++|.+.+..        +..+.++|+++++.+||..||++|+|||+|-..|
T Consensus        14 ~~s~~~v~ivQ~~t~~~--------dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGY   64 (337)
T KOG0805|consen   14 SSSIVRVTIVQASTVYN--------DTPATLDKAEKYIVEAASKGAELVLFPEAFIGGY   64 (337)
T ss_pred             cccceEEEEEEcccCCC--------CCHHHHHHHHHHHHHHhcCCceEEEeehHhccCC
Confidence            45679999999986443        2448999999999999999999999999998877

>KOG0807|consensus

Probab=97.84  E-value=2.1e-05  Score=66.88  Aligned_cols=45  Identities=27%  Similarity=0.406  Sum_probs=40.1

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccC
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRR  120 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~  120 (139)
                      ..+||+.|+....         ++.+|++.++++|++|+.+||.+|||||+|..
T Consensus        15 ~~~vAv~Qm~S~~---------Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dF   59 (295)
T KOG0807|consen   15 LKRVAVAQMTSSN---------DLTKNLATCKELISEAAQKGAKLIFLPEAFDF   59 (295)
T ss_pred             cceeEEEeeccch---------HHHHHHHHHHHHHHHHHHcCCCEEEcchhhhh
Confidence            3789999997644         47799999999999999999999999999864

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=97.14  E-value=0.00072  Score=57.70  Aligned_cols=54  Identities=17%  Similarity=0.098  Sum_probs=42.3

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      ..+||++||..+....  .--.++.++|+++..+++++|++ |+++||+||.+...|
T Consensus       158 ~~~~ValvQ~n~~~~~--k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~  211 (391)
T TIGR00546       158 PTLNVALVQPNIPQDL--KFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFD  211 (391)
T ss_pred             CcceEEEEcCCCCccc--ccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccc
Confidence            3589999999874321  11234678899999999999988 999999999987655

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=97.03  E-value=0.0012  Score=57.89  Aligned_cols=58  Identities=14%  Similarity=0.074  Sum_probs=44.1

Q ss_pred             ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhh
Q psy3318          68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVY  129 (139)
Q Consensus        68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed  129 (139)
                      ++|++||..+..+..  =-.++.++++++..+++++|+..|+++||+||.+. |+ |.+..+
T Consensus       195 ~~V~lVQ~ni~q~~K--w~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~-p~-~~~~~~  252 (418)
T PRK12291        195 VNIELVNTNIPQDLK--WDKENLKSIINENLKEIDKAIDEKKDLIVLPETAF-PL-ALNNSP  252 (418)
T ss_pred             CEEEEEeCCCCcccc--cChhhHHHHHHHHHHHHHHHhccCCCEEEeCCccc-cc-chhhCH
Confidence            589999998754321  11245678999999999999999999999999874 66 555443

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=96.98  E-value=0.0013  Score=58.16  Aligned_cols=54  Identities=19%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      .+||++||..+....  ..-..+.++|++++.++++ ++..|+++||+||.+. || ++
T Consensus       219 ~~~ValvQ~ni~~~~--k~~~~~~~~~l~~~~~~~~-~~~~~~dlvV~PE~a~-p~-~~  272 (505)
T PRK00302        219 ALKVALVQGNIPQSL--KWDPAGLEATLQKYLDLSR-PALGPADLIIWPETAI-PF-LL  272 (505)
T ss_pred             CcEEEEECCCCChhc--ccCHHHHHHHHHHHHHHHh-cccCCCCEEEeCCccc-cc-cc
Confidence            489999999874421  1112567889999999999 5567999999999876 77 54

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=89.80  E-value=0.35  Score=42.52  Aligned_cols=31  Identities=19%  Similarity=0.112  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          92 ATYDRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        92 anl~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      ++++...+.|+.|++.|+++|||||.+...|
T Consensus       206 ~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~  236 (388)
T PRK13825        206 ERRRELIATVRAAAAAGARVVVLPESALGFW  236 (388)
T ss_pred             HHHHHHHHHHHhhcccCCCEEEccCcccccc
Confidence            5666777889999999999999999999776

>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []

Probab=80.63  E-value=1.4  Score=32.25  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhCCCeEEEccccccC
Q psy3318          96 RVEKLINAAGESGVNVLCLQEAWRR  120 (139)
Q Consensus        96 k~~~lI~~AA~~GanIICLQElf~~  120 (139)
                      +...+.+.-...+++||||||.+..
T Consensus        17 ~~~~i~~~i~~~~~Dii~LQEv~~~   41 (249)
T PF03372_consen   17 KRREIAQWIAELDPDIIALQEVRND   41 (249)
T ss_dssp             HHHHHHHHHHHHT-SEEEEEEEESH
T ss_pred             HHHHHHHHHHhcCCCEEEEecchhh
Confidence            3334555555667999999999964

Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2vhh_A	405	Crystal Structure Of A Pyrimidine Degrading Enzyme		1e-19

>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 1   MSADEPFESVETILQKYIPEDELKLVNAVLYG-EPLKKLYLPNS-----KSNEFNVVGYK 54
           MSA E  +++   L+K++P DELK V  +LYG E  + L LP S     + N F++ GY+
Sbjct: 1   MSAFE-LKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYR 59
Query: 55  FGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114
           F A+ E +R  R+VRVG IQN I   T +  + ++R A +++V+ +I AA E+G N++C 
Sbjct: 60  FTAREEQTRKRRIVRVGAIQNSIVIPTTA-PIEKQREAIWNKVKTMIKAAAEAGCNIVCT 118
Query: 115 QEAWRRP 121
           QEAW  P
Sbjct: 119 QEAWTMP 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	4e-30
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	2e-05
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	3e-04
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	7e-04

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score =  111 bits (278), Expect = 4e-30
 Identities = 52/127 (40%), Positives = 80/127 (62%), Gaps = 8/127 (6%)

Query: 1   MSADEPFESVETILQKYIPEDELKLVNAVLYG-EPLKKLYLPN-----SKSNEFNVVGYK 54
           MSA E  +++   L+K++P DELK V  +LYG E  + L LP      ++ N F++ GY+
Sbjct: 1   MSAFE-LKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYR 59

Query: 55  FGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114
           F A+ E +R  R+VRVG IQN I   T +  + ++R A +++V+ +I AA E+G N++C 
Sbjct: 60  FTAREEQTRKRRIVRVGAIQNSIVIPT-TAPIEKQREAIWNKVKTMIKAAAEAGCNIVCT 118

Query: 115 QEAWRRP 121
           QEAW  P
Sbjct: 119 QEAWTMP 125

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 6/56 (10%)

Query: 66  RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
           R + + + Q             + R     R+  ++  A   G N +   E     
Sbjct: 2   RQMILAVGQQG------PIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTT 51

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 67  LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
           +V+V  +Q +            E    Y + EKLI  A + G  ++ L E +   
Sbjct: 1   MVKVAYVQMNP--------QILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTG 47

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 8/66 (12%)

Query: 53  YKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVL 112
           +              +R+ ++Q+           P +     D ++     A E G  +L
Sbjct: 6   HHHHHSSGLVIRGSHMRIALMQHTA--------RPLDPQHNLDLIDDAAARASEQGAQLL 57

Query: 113 CLQEAW 118
              E +
Sbjct: 58  LTPELF 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	100.0
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	98.87
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	98.86
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	98.85
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	98.84
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	98.77
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	98.7
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	98.69
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	98.64
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	98.6
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	98.56
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	98.55
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	98.54
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	98.52
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	98.44
4f1h_A	250	Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com	86.65
4fva_A	256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	84.59
4gz1_A	256	Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl	83.69
2jc4_A	256	Exodeoxyribonuclease III; hydrolase, repair phosph	82.89
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	80.41
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	80.13

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=100.00  E-value=1.8e-34  Score=245.46  Aligned_cols=126  Identities=40%  Similarity=0.684  Sum_probs=112.0

Q ss_pred             CCCCCCcchHHHHHHcCCChHHHHHHHHHHhCCCC-ccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEe
Q psy3318           1 MSADEPFESVETILQKYIPEDELKLVNAVLYGEPL-KKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQ   74 (139)
Q Consensus         1 m~~~~~~~sle~~l~~~lp~~~l~ev~riLyG~~~-~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ   74 (139)
                      |++ .+|+|||++|+||||+++|+||+|||||+++ ++|+||..+     ++||+|+||.|.+.+||+|+++.+|||+||
T Consensus         1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVAlvQ   79 (405)
T 2vhh_A            1 MSA-FELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQ   79 (405)
T ss_dssp             ------CCCHHHHHTTTSCHHHHHHHHHHHSSSSSCCBCCCCHHHHHHHHHTTCEEEEEECCCCCCSSSCCCEEEEEEEE
T ss_pred             CCc-cccchHHHHHHhcCCHHHHHHHHHHhcCCccCccCCCCHHHHHHhhhcCceEeeeeeccchhhhcCCCCCEEEEEe
Confidence            887 6999999999999999999999999999999 899999987     889999999999999999999999999999


Q ss_pred             cccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchh
Q psy3318          75 NHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQV  128 (139)
Q Consensus        75 ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~E  128 (139)
                      +.+..++. .|+..++++|++++.++|++|+..||+||||||+|.+||.||.++
T Consensus        80 ~~i~~~~~-~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~  132 (405)
T 2vhh_A           80 NSIVIPTT-APIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTRE  132 (405)
T ss_dssp             CCCCSCSS-SCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC----
T ss_pred             cccccccc-ccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccc
Confidence            99877655 677889999999999999999999999999999999999888753

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=98.87  E-value=3.8e-09  Score=83.01  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=43.8

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY  124 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF  124 (139)
                      ++|||++|+.+.        ..++++|++++.++|++|+..||+||||||+|.+.|.|
T Consensus         1 M~rva~~Q~~~~--------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~   50 (262)
T 3ivz_A            1 MVKVAYVQMNPQ--------ILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNF   50 (262)
T ss_dssp             -CEEEEEECCCC--------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCC
T ss_pred             CeEEEEEeccCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCC
Confidence            489999999643        24688999999999999999999999999999999944

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=98.86  E-value=2.8e-09  Score=94.45  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=45.7

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      ++|||++|+.        |+..|.++|++++.++|++|+++||+||||||+|.+.| +|.
T Consensus         6 kmKIAlaQln--------~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY-~~~   56 (565)
T 4f4h_A            6 KTRIALAQLN--------VTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGY-PPE   56 (565)
T ss_dssp             CEEEEEEECC--------CCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCS-CCG
T ss_pred             ceEEEEEECC--------CCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCC-ChH
Confidence            3899999994        34456899999999999999999999999999999999 875

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=98.85  E-value=3.2e-09  Score=84.96  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      +.+|||++|..+.        ..++++|++++.++|++|++.||+||||||+|.+.| ++.
T Consensus        19 ~~~kva~~Q~~~~--------~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy-~~~   70 (281)
T 3p8k_A           19 SHMKVQIYQLPIV--------FGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGY-DLE   70 (281)
T ss_dssp             SEEEEEEEECCCC--------TTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTT-CGG
T ss_pred             CCcEEEEEeccCC--------cCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCC-Chh
Confidence            4599999999652        245889999999999999999999999999999999 554

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=98.84  E-value=4.1e-09  Score=83.72  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=46.3

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      |+.+|||++|..+...      ..++++|++++.++|++|+..||+||||||+|.++| ++.
T Consensus         1 ~~~~~va~~Q~~~~~~------~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy-~~~   55 (303)
T 1uf5_A            1 TRQMILAVGQQGPIAR------AETREQVVVRLLDMLTKAASRGANFIVFPELALTTF-FPR   55 (303)
T ss_dssp             CCEEEEEEEEBCCCCT------TCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCC-GGG
T ss_pred             CccEEEEEEEecCccc------ccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCC-Ccc
Confidence            4569999999964320      146889999999999999999999999999999988 653

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=98.77  E-value=7.4e-09  Score=82.92  Aligned_cols=53  Identities=19%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      ...+|||++|+.+.        ..++++|++++.++|++|++.||+||||||+|.+.| .+.
T Consensus        18 ~~~~rva~~Q~~~~--------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy-~~~   70 (283)
T 3hkx_A           18 GSHMRIALMQHTAR--------PLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGY-VPS   70 (283)
T ss_dssp             TEEEEEEEEEBCCC--------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCS-CHH
T ss_pred             CCccEEEEEeCCCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCC-ChH
Confidence            34699999999653        235889999999999999999999999999999988 544

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=98.70  E-value=1.5e-08  Score=79.38  Aligned_cols=51  Identities=12%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      +.+|||++|..+.        ..++++|++++.++|++| ..||+||||||+|.++| ++.
T Consensus         2 ~~~kva~~Q~~~~--------~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy-~~~   52 (266)
T 2e11_A            2 HDLRISLVQGSTR--------WHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGF-SNE   52 (266)
T ss_dssp             CCEEEEEEECCCC--------TTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCS-CSG
T ss_pred             CccEEEEEeCCCC--------cCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccC-Chh
Confidence            3489999999653        245889999999999999 89999999999999999 653

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=98.69  E-value=2.7e-08  Score=78.55  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=43.9

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG  125 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC  125 (139)
                      +.+|||++|..+.         .++++|++++.++|++|++.||+||||||+|.++| .+
T Consensus         2 ~~~~va~vQ~~~~---------~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy-~~   51 (276)
T 2w1v_A            2 STFRLALIQLQVS---------SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-GT   51 (276)
T ss_dssp             CEEEEEEEECCCC---------SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCC-ST
T ss_pred             CccEEEEEecccc---------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCC-CH
Confidence            3589999999642         24889999999999999999999999999999998 44

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=98.64  E-value=3.5e-08  Score=87.14  Aligned_cols=53  Identities=9%  Similarity=0.066  Sum_probs=46.6

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      ++.+|||++|..+        ...+.++|++++.++|++|++.||+||||||+|.+.| .|.
T Consensus         2 ~~~~rvA~~Q~~~--------~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy-~~~   54 (590)
T 3n05_A            2 SLQLRLALNQIDS--------TVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGY-PVE   54 (590)
T ss_dssp             CEEEEEEEEECCC--------CTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCS-CCG
T ss_pred             CCccEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCC-ChH
Confidence            3569999999954        3346889999999999999999999999999999999 775

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=98.60  E-value=4.7e-08  Score=77.49  Aligned_cols=49  Identities=18%  Similarity=0.373  Sum_probs=43.0

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHH--HhCCCeEEEccccccCCC
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAA--GESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~A--A~~GanIICLQElf~~Py  122 (139)
                      +.+|||++|..+..        .++++|++++.++|++|  +..||+||||||+|.++|
T Consensus         9 ~~~~va~vQ~~~~~--------~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~   59 (291)
T 1f89_A            9 QKIKVALVQLSGSS--------PDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPY   59 (291)
T ss_dssp             SCEEEEEEECCCCC--------SCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCS
T ss_pred             ccceEEEEeccCCc--------CCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCC
Confidence            35899999996321        35889999999999999  999999999999999998

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=98.56  E-value=8.5e-08  Score=85.81  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      ++.+|||++|..+        ...+.++|++++.++|++|++.||+||||||+|.+.| +|.
T Consensus         3 M~~~rVA~~Q~~~--------~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY-~~~   55 (634)
T 3ilv_A            3 LSTIRIGGAAVNQ--------TPIDWENNVKNILDAIEEAKNANVEILCLPELCITGY-GCE   55 (634)
T ss_dssp             -CEEEEEEEEECC--------CTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCS-CCG
T ss_pred             CCCeEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccC-ChH
Confidence            3469999999964        2345889999999999999999999999999999999 775

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=98.55  E-value=1.3e-07  Score=79.61  Aligned_cols=51  Identities=14%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      +.+|||++|..+.         .++++|++++.++|++|++.||+||||||+|.++| ++.
T Consensus        13 ~~~kVa~vQ~~~~---------~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~-~~~   63 (440)
T 1ems_A           13 GRHFIAVCQMTSD---------NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIG-LNK   63 (440)
T ss_dssp             SEEEEEEECBCCC---------SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCC-SSH
T ss_pred             CCceEEEEecCCC---------CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccC-cch
Confidence            4699999999653         24889999999999999999999999999999887 553

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=98.54  E-value=1.3e-07  Score=77.65  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=46.1

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCCCCCc
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~PyaFCt  126 (139)
                      .+|||++|..+...    +...+.++|++++.++|++|++  .||+||||||+|.+.| ++.
T Consensus        13 ~~~Va~vQ~~i~~~----~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~-~~~   69 (334)
T 2dyu_A           13 GFLVAAIQFPVPIV----NSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGL-NTA   69 (334)
T ss_dssp             CEEEEEECCBCCCC----CSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCC-CTT
T ss_pred             ccEEEEEecCCccC----CchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccC-CCC
Confidence            58999999975322    2356899999999999999998  7999999999999988 443

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=98.52  E-value=1.6e-07  Score=77.59  Aligned_cols=57  Identities=11%  Similarity=0.146  Sum_probs=46.9

Q ss_pred             ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCCCCCch
Q psy3318          66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~PyaFCt~  127 (139)
                      ..+|||++|..+...    +...+.++|++++.++|++|++  .||+||||||+|.+.| ++..
T Consensus        11 ~~~kValvQ~~i~~~----~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~-~~~~   69 (341)
T 2uxy_A           11 DTVGVAVVNYKMPRL----HTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGI-MYDP   69 (341)
T ss_dssp             TEEEEEEECCBCCBC----CSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBC-CCSH
T ss_pred             CccEEEEEECCcccC----CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCccccc-CCCH
Confidence            469999999975321    2356899999999999999988  7999999999999888 4443

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=98.44  E-value=1.9e-07  Score=84.55  Aligned_cols=53  Identities=17%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      .+.+|||++|..+.        ..+.++|++++.++|++|++.||+||||||+|.+.| .|.
T Consensus        10 ~g~~rVAl~Q~~~~--------~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY-~~~   62 (680)
T 3sdb_A           10 HGFVRVAACTHHTT--------IGDPAANAASVLDMARACHDDGAALAVFPELTLSGY-SIE   62 (680)
T ss_dssp             GTEEEEEEEECCCC--------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCG-GGG
T ss_pred             CCCeEEEEEcCCCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCC-ChH
Confidence            35699999999642        345889999999999999999999999999999999 775

>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*

Probab=86.65  E-value=0.37  Score=33.91  Aligned_cols=20  Identities=25%  Similarity=0.104  Sum_probs=14.0

Q ss_pred             HHHHHHHhCCCeEEEccccc
Q psy3318          99 KLINAAGESGVNVLCLQEAW  118 (139)
Q Consensus        99 ~lI~~AA~~GanIICLQElf  118 (139)
                      .+++.-....++||||||..
T Consensus        25 ~i~~~i~~~~pDIi~LQEv~   44 (250)
T 4f1h_A           25 GLCSYLALYTPDVVFLQELI   44 (250)
T ss_dssp             HHHHHHHHHCCSEEEEEEEC
T ss_pred             HHHHHHHHcCCCEEEEEeCC
Confidence            33444445689999999974

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}

Probab=84.59  E-value=0.54  Score=33.96  Aligned_cols=22  Identities=23%  Similarity=0.293  Sum_probs=15.3

Q ss_pred             HHHHHHHhCCCeEEEccccccC
Q psy3318          99 KLINAAGESGVNVLCLQEAWRR  120 (139)
Q Consensus        99 ~lI~~AA~~GanIICLQElf~~  120 (139)
                      .+++.-....++||||||.+..
T Consensus        35 ~i~~~i~~~~pDIi~LQEv~~~   56 (256)
T 4fva_A           35 AVAHIVKNVNPDILFLQEVVDR   56 (256)
T ss_dssp             HHHHHHHHHCCSEEEEEEECST
T ss_pred             HHHHHHHHcCCCEEEEEecChh
Confidence            3444444568999999998643

>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*

Probab=83.69  E-value=0.6  Score=33.60  Aligned_cols=21  Identities=19%  Similarity=0.158  Sum_probs=14.6

Q ss_pred             HHHHHHHHhCCCeEEEccccc
Q psy3318          98 EKLINAAGESGVNVLCLQEAW  118 (139)
Q Consensus        98 ~~lI~~AA~~GanIICLQElf  118 (139)
                      ..+++.-....++||||||..
T Consensus        30 ~~i~~~i~~~~pDIi~LQEv~   50 (256)
T 4gz1_A           30 RGVCSCLALYSPDVVFLQEVI   50 (256)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEEcCC
Confidence            334444445689999999974

>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}

Probab=82.89  E-value=0.9  Score=33.20  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             HHHHHHHHhCCCeEEEccccccCCC
Q psy3318          98 EKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        98 ~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      ..+++.....+++||||||.+....
T Consensus        16 ~~i~~~i~~~~~DIv~LQE~~~~~~   40 (256)
T 2jc4_A           16 PQVQNLLADNPPDILVLQELKLDQD   40 (256)
T ss_dssp             HHHHHHHHSSCCSEEEEECCCSCGG
T ss_pred             HHHHHHHHhcCCCEEEEEeeccchh
Confidence            3455555678999999999987643

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=80.41  E-value=7.4  Score=29.22  Aligned_cols=67  Identities=9%  Similarity=0.076  Sum_probs=41.4

Q ss_pred             eeeeeeccCCCCCCCCCc---cceEEEEecccCCCCCC--C--------CchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318          49 NVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTVS--C--------NVPQERSATYDRVEKLINAAGESGVNVLCLQ  115 (139)
Q Consensus        49 el~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~~--a--------pv~~qk~anl~k~~~lI~~AA~~GanIICLQ  115 (139)
                      =+.|+.|+-....-..|+   ..||++++.+...+.+-  +        ....-.++-.+.+.++++.-++.|+|||+-|
T Consensus         6 lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~   85 (178)
T 1gml_A            6 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE   85 (178)
T ss_dssp             EEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEES
T ss_pred             EEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence            367888876654433343   46899999987554220  0        0111123334667788888899999998765

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=80.13  E-value=7.1  Score=28.93  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             eeeeeccCCCCCCCCCc---cceEEEEecccCCCCC----------CCCchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318          50 VVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTV----------SCNVPQERSATYDRVEKLINAAGESGVNVLCLQ  115 (139)
Q Consensus        50 l~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~----------~apv~~qk~anl~k~~~lI~~AA~~GanIICLQ  115 (139)
                      +.|+.|+-...--..|+   ..||++++.+...+.+          ......-.++-.+.+.++++.-++.|+|||+-|
T Consensus         1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~   79 (159)
T 1ass_A            1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ   79 (159)
T ss_dssp             CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEES
T ss_pred             CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEEC
Confidence            45777765544433444   3689999987754311          011111123334567788888899999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	1e-04
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	3e-04
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	0.001

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 67  LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
           +V+VG IQ              E    Y + EKLI  A + G  ++ L E +
Sbjct: 1   MVKVGYIQMEP--------KILELDKNYSKAEKLIKEASKEGAKLVVLPELF 44

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 9/51 (17%)

Query: 68  VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
             + + Q              +    +   + +I  AGE    ++ L E +
Sbjct: 6   HFIAVCQ---------MTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECF 47

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 66  RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
           R + + + Q   G    +      R     R+  ++  A   G N +   E  
Sbjct: 2   RQMILAVGQ--QGPIARAET----REQVVVRLLDMLTKAASRGANFIVFPELA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	99.09
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	99.09
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.01
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	98.96
d1akoa_	268	DNA-repair enzyme exonuclease III {Escherichia col	91.91
d2ddra1	299	Sphingomyelin phosphodiesterase C {Bacillus cereus	88.02
d2a40b1	260	Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913	87.94
d1zwxa1	293	Sphingomyelin phosphodiesterase C {Listeria ivanov	87.25
d1wdua_	228	Endonuclease domain of TRAS1 retrotransposon (ORF2	85.69
d1hd7a_	275	DNA repair endonuclease Hap1 {Human (Homo sapiens)	80.34

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=7.8e-11  Score=90.41  Aligned_cols=53  Identities=28%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchh
Q psy3318          67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQV  128 (139)
Q Consensus        67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~E  128 (139)
                      +||||++|..        |...++++|++++.++|++|+++||+||||||+|.++| +|...
T Consensus         1 ~~ria~~Q~~--------~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy-~~~~~   53 (262)
T d1j31a_           1 MVKVGYIQME--------PKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGY-NFESR   53 (262)
T ss_dssp             CEEEEEEECC--------CCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCS-CCSSH
T ss_pred             CEEEEEEECC--------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCC-chhhh
Confidence            5899999984        45567999999999999999999999999999999999 66543

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=99.09  E-value=7.5e-11  Score=91.66  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS  126 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt  126 (139)
                      .|.+|||++|......      .+++++|++|+.++|++|+++||+||||||+|.++| ||.
T Consensus         1 ~~~~~ia~~Q~~Pi~~------~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l~Gy-~~~   55 (303)
T d1uf5a_           1 TRQMILAVGQQGPIAR------AETREQVVVRLLDMLTKAASRGANFIVFPELALTTF-FPR   55 (303)
T ss_dssp             CCEEEEEEEEBCCCCT------TCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCC-GGG
T ss_pred             CcEEEEEEEccCCcCC------CcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccC-Ccc
Confidence            3679999999842222      247999999999999999999999999999999999 874

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.01  E-value=2.6e-10  Score=87.18  Aligned_cols=55  Identities=13%  Similarity=0.184  Sum_probs=47.3

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhh
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVY  129 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed  129 (139)
                      .+.+|||++|+.+.         .+.++|++++..+|++|++.||+||||||+|..+| +|..+.
T Consensus         3 ~~~~rVA~~Q~~~~---------~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~-~~~~~~   57 (271)
T d1emsa2           3 TGRHFIAVCQMTSD---------NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIG-LNKNEQ   57 (271)
T ss_dssp             CSEEEEEEECBCCC---------SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCC-SSHHHH
T ss_pred             CCCeEEEEEeCCCC---------CCHHHHHHHHHHHHHHHHHCcCeEEECCccccccC-CCHHHH
Confidence            45699999998643         35889999999999999999999999999999888 776544

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2.4e-10  Score=87.19  Aligned_cols=54  Identities=19%  Similarity=0.310  Sum_probs=45.7

Q ss_pred             CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhC--CCeEEEccccccCCCCCCch
Q psy3318          65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGES--GVNVLCLQEAWRRPDRYGSQ  127 (139)
Q Consensus        65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~--GanIICLQElf~~PyaFCt~  127 (139)
                      ++.||||++|...        +..|+++|++++.++|++|++.  ||+||||||+|.++| .|..
T Consensus         7 ~~~~kia~~Q~~~--------~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy-~~~~   62 (281)
T d1f89a_           7 SQKIKVALVQLSG--------SSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPY-STDQ   62 (281)
T ss_dssp             SSCEEEEEEECCC--------CCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCS-CHHH
T ss_pred             ccCceEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCC-chhH
Confidence            4569999999853        3446899999999999999765  999999999999999 5543

>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.03  Score=37.68  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318          95 DRVEKLINAAGESGVNVLCLQEAWRRPD  122 (139)
Q Consensus        95 ~k~~~lI~~AA~~GanIICLQElf~~Py  122 (139)
                      +++.++|   .+.+++||||||+|....
T Consensus        16 ~~i~~~i---~~~~~DIi~LQEv~~~~~   40 (268)
T d1akoa_          16 HQLEAIV---EKHQPDVIGLQETKVHDD   40 (268)
T ss_dssp             HHHHHHH---HHHCCSEEEEECCCCCGG
T ss_pred             HHHHHHH---HHCCCCEEEEEeeecChh
Confidence            3344444   356899999999976554

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]

Probab=88.02  E-value=0.073  Score=37.41  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhCCCeEEEcccccc
Q psy3318          96 RVEKLINAAGESGVNVLCLQEAWR  119 (139)
Q Consensus        96 k~~~lI~~AA~~GanIICLQElf~  119 (139)
                      |+..+.+.-...+++||||||++.
T Consensus        27 r~~~i~~~i~~~~~DIi~LQEv~~   50 (299)
T d2ddra1          27 RADLIGAADYIKNQDVVILNEVFD   50 (299)
T ss_dssp             HHHHHHHCSTTCSCSEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCEEEEEccCC
Confidence            444455545567999999999864

>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Deoxyribonuclease I
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.94  E-value=0.21  Score=32.64  Aligned_cols=16  Identities=13%  Similarity=0.113  Sum_probs=13.1

Q ss_pred             CCCeEEEccccccCCC
Q psy3318         107 SGVNVLCLQEAWRRPD  122 (139)
Q Consensus       107 ~GanIICLQElf~~Py  122 (139)
                      ..++||||||.+....
T Consensus        30 ~~~DIi~LQEv~~~~~   45 (260)
T d2a40b1          30 RRYDIVLIQEVRDSHL   45 (260)
T ss_dssp             TTCSEEEEEEECCTTS
T ss_pred             CCCCEEEEEeeecCCc
Confidence            3699999999987654

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

Probab=87.25  E-value=0.093  Score=36.74  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhCCCeEEEcccccc
Q psy3318          96 RVEKLINAAGESGVNVLCLQEAWR  119 (139)
Q Consensus        96 k~~~lI~~AA~~GanIICLQElf~  119 (139)
                      |+..+.+.-...+++||||||.+.
T Consensus        28 r~~~i~~~i~~~~~DVi~LQEv~~   51 (293)
T d1zwxa1          28 RADLIAQADYMKNNDVVILNEAFD   51 (293)
T ss_dssp             HHHHHHTSGGGSSCSEEEEEEECS
T ss_pred             HHHHHHHHHHhcCCCEEEEEccCC
Confidence            344444444567999999999865

>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of TRAS1 retrotransposon (ORF2)
species: Silkworm (Bombyx mori) [TaxId: 7091]

Probab=85.69  E-value=0.23  Score=33.78  Aligned_cols=27  Identities=15%  Similarity=0.096  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHhCCCeEEEccccccCC
Q psy3318          95 DRVEKLINAAGESGVNVLCLQEAWRRP  121 (139)
Q Consensus        95 ~k~~~lI~~AA~~GanIICLQElf~~P  121 (139)
                      .+..+++.......++||||||.|...
T Consensus        15 ~~~~~l~~~i~~~~~DIi~lQE~~~~~   41 (228)
T d1wdua_          15 LATAELAIEAATRKAAIALIQEPYVGG   41 (228)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESCCC--
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence            444567777888899999999988643

>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.34  E-value=1.3  Score=30.62  Aligned_cols=13  Identities=46%  Similarity=0.787  Sum_probs=10.9

Q ss_pred             hCCCeEEEccccc
Q psy3318         106 ESGVNVLCLQEAW  118 (139)
Q Consensus       106 ~~GanIICLQElf  118 (139)
                      ...++||||||+.
T Consensus        43 ~~~pDIi~LQE~k   55 (275)
T d1hd7a_          43 EEAPDILCLQETK   55 (275)
T ss_dssp             HHCCSEEEEECCC
T ss_pred             hCCCCEEEEEccc
Confidence            4589999999973