Psyllid ID: psy3328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MYKKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHcHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHHHHHcccccHHHHHHHHHcccccccccHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHcccccHHccHHHHHHHcc
Coil and Loop (DISEMBL)
MYKKKKKKKEEAEikhtstfdfSIWMIISEADTLKkvthqtrhygtggyYAFMLnnkildpdigetirtdlprtfpeniffrNSLEHQQQLSRILKVFAldeknigycQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVkikmphlydhiskvgvpwpviaTKWFICMFADVLPVETVLRIWDClfvegpkiLFRVSLTLIKLHERALLECEDFTTLVECFKsmvrspavlnchSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK
Flexible Loop (DISEMBL)
mykkkkkkkeeaeikhtstfdfsiWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNdyytktltgvvrdiDVLSELVK
Low Complexity Region (SEG)
MYkkkkkkkEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK
Disordered region (IsUnstruct)
*****************STFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLS****
Disordered Region (DISOPRED)
****KKK*KEEAEIKHTSTFDFSIWMIISEADTLKKVT*****YGTGGYYAFMLN*******IGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLN****************YWIFRSVINKYFSDYYT***********VLSELV***********VRDIDVLSELVK
Disordered Region (DISEMBL)
**************KHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK
Disordered Region (DISPRO)
*YKKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q6PBU5	356	Growth hormone-regulated	yes	N/A	0.679	0.643	0.437	1e-56
Q5TC63	336	Growth hormone-regulated	yes	N/A	0.679	0.681	0.395	1e-52
Q6GL87	342	Growth hormone-regulated	yes	N/A	0.682	0.672	0.395	1e-51
Q6GLZ0	342	Growth hormone-regulated	N/A	N/A	0.682	0.672	0.404	1e-51
Q9D3N8	359	Growth hormone-regulated	yes	N/A	0.679	0.637	0.381	4e-50
Q4QQU7	289	Growth hormone-regulated	no	N/A	0.572	0.667	0.435	4e-49
Q09445	330	Growth hormone-regulated	yes	N/A	0.587	0.6	0.358	1e-30
Q8IV04	446	Carabin OS=Homo sapiens G	no	N/A	0.759	0.573	0.309	5e-29
B1AVH7	922	TBC1 domain family member	no	N/A	0.593	0.216	0.349	6e-29
B5DFA1	924	TBC1 domain family member	no	N/A	0.572	0.208	0.348	8e-29

>sp|Q6PBU5|GRT1A_DANRE Growth hormone-regulated TBC protein 1-A OS=Danio rerio GN=grtp1a PE=2 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/240 (43%), Positives = 155/240 (64%), Gaps = 11/240 (4%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +WM+ S A        Q +     GYY  +L+    +P + E+IRTDL RTFP+NI+FR 
Sbjct: 96  VWMVCSGA--------QEQMDRNPGYYQSLLDTH-HEPKLEESIRTDLHRTFPDNIYFRK 146

Query: 84  SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
           S E   QQ L  +L  +    K +GYCQG+N+IA  ++LV+K EE ++W+  +++++   
Sbjct: 147 SAEPCLQQALYNVLVAYGHHNKAVGYCQGMNFIAGYLILVSKDEETSFWLMEALLSRILP 206

Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
           DYYT  + G+  D +VL ELV++K P ++  +   GV W ++ ++WFIC+F DVLPVETV
Sbjct: 207 DYYTPAMLGLKTDQEVLGELVRLKAPAVWKLMQDQGVMWTLVVSRWFICLFIDVLPVETV 266

Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMS 261
           LRIWDCLF EG KILFRV+LTLI+ H++ + E ++   + E FK + R   V +CH+FM 
Sbjct: 267 LRIWDCLFYEGSKILFRVALTLIRHHQQEIAEAQNLPDVCERFKRITRGAFVEDCHTFMQ 326

May act as a GTPase-activating protein for Rab family protein(s).
Danio rerio (taxid: 7955)

>sp|Q5TC63|GRTP1_HUMAN Growth hormone-regulated TBC protein 1 OS=Homo sapiens GN=GRTP1 PE=1 SV=4

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 152/240 (63%), Gaps = 11/240 (4%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +WM++S A        Q +     GYY  +L  +  +P + + IRTDL RTFP+N+ FR 
Sbjct: 77  VWMVLSGA--------QAQMDQNPGYYHQLLQGE-RNPRLEDAIRTDLNRTFPDNVKFRK 127

Query: 84  SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
           + +   Q+ L  +L  +    + +GYCQG+N+IA  ++L+T +EE ++W+  +++ +   
Sbjct: 128 TTDPCLQRTLYNVLLAYGHHNQGVGYCQGMNFIAGYLILITNNEEESFWLLDALVGRILP 187

Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
           DYY+  + G+  D +VL ELV+ K+P +   + ++GV W ++ ++WFIC+F D+LPVETV
Sbjct: 188 DYYSPAMLGLKTDQEVLGELVRAKLPAVGALMERLGVLWTLLVSRWFICLFVDILPVETV 247

Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMS 261
           LRIWDCLF EG KI+FRV+LTLIK H+  +LE      + + FK + +   V+ CH+FM 
Sbjct: 248 LRIWDCLFNEGSKIIFRVALTLIKQHQELILEATSVPDICDKFKQITKGSFVMECHTFMQ 307

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q6GL87|GRTP1_XENTR Growth hormone-regulated TBC protein 1 OS=Xenopus tropicalis GN=grtp1 PE=2 SV=1

 Score =  204 bits (518), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 147/240 (61%), Gaps = 10/240 (4%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +WM++S A        Q +     GY+  M      +P + + + TDL RTFP+N+ F+ 
Sbjct: 81  VWMVVSGA--------QAQMDMNTGYFRRMFTEGEKNPKLLDLVITDLNRTFPDNVLFQK 132

Query: 84  SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
           +     Q+ L  +L  +    K +GYCQG+N+IA  ++LVTK EE  +W+  ++I +   
Sbjct: 133 NANPSLQKDLYNVLVAYGQHNKTVGYCQGMNFIAGYLILVTKDEEKAFWLMDALIGQILP 192

Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
           DYY+  +TG+  D +VL +LVK K+P +   I   GV W ++ ++WFIC+F D+LPVETV
Sbjct: 193 DYYSPAMTGLKTDQEVLGDLVKKKIPSVAQLIETHGVMWTLLVSRWFICLFIDILPVETV 252

Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMS 261
           LRIWDCLF EG K++FRV+LTLIK  + +++E  +F  + + FK + +   V +CH FM 
Sbjct: 253 LRIWDCLFFEGSKVIFRVALTLIKQSQASIMEARNFPDICDKFKEITKGEFVTDCHYFMQ 312

May act as a GTPase-activating protein for Rab family protein(s).

Xenopus tropicalis (taxid: 8364)

>sp|Q6GLZ0|GRTP1_XENLA Growth hormone-regulated TBC protein 1 OS=Xenopus laevis GN=grtp1 PE=2 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 10/240 (4%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +WM++S A        Q +     GY+  M      +P + + + TDL RTFP+N+ FR 
Sbjct: 81  VWMVVSGA--------QAQMGMNTGYFRRMFIEGEKNPKLLDLVNTDLNRTFPDNVQFRK 132

Query: 84  SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
           +     Q+ L  +L  +      +GYCQG+N+IA  ++LVTK EE  +W+  ++I +   
Sbjct: 133 NSNPSLQKHLYNVLVAYGQHNTTVGYCQGMNFIAGYLILVTKDEEKAFWLMDALIGRILP 192

Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
           DYY+  +TG+  D +VL +LVK K+P +   I   GV W ++ ++WFIC+F D+LPVETV
Sbjct: 193 DYYSPAMTGLKTDQEVLGDLVKKKLPAVSQLIEAHGVMWTLLVSRWFICLFIDILPVETV 252

Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMS 261
           LRIWDCLF EG K+LFRV+LTLIK ++  +LE  +F  + + FK + +   V +CH FM 
Sbjct: 253 LRIWDCLFFEGSKVLFRVALTLIKQYQAFILEARNFPDICDKFKEITKGEFVTDCHYFMQ 312

May act as a GTPase-activating protein for Rab family protein(s).

Xenopus laevis (taxid: 8355)

>sp|Q9D3N8|GRTP1_MOUSE Growth hormone-regulated TBC protein 1 OS=Mus musculus GN=Grtp1 PE=2 SV=1

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 151/257 (58%), Gaps = 28/257 (10%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +WM +S A        Q R   + GYY  +L  +     + E IRTDL RTFP+N+ FR 
Sbjct: 83  VWMAVSGA--------QARMDQSPGYYHRLLEGES-SSSLDEAIRTDLNRTFPDNVMFRK 133

Query: 84  SLEH--QQQLSRILKVFALDEKNIGYCQ-----------------GLNYIAALILLVTKH 124
           + +   Q+ L  +L  + L   ++GYCQ                 G+N+IA  ++L+TK+
Sbjct: 134 TADPCLQKTLYNVLLAYGLHNPDVGYCQCCAQKPGSSAGLRSSLTGMNFIAGYLILITKN 193

Query: 125 EENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIA 184
           EE ++W+  +++ +   DYY+  + G+  D +VL+ELV++K+P +   +   GV W ++ 
Sbjct: 194 EEESFWLLDALVGRILPDYYSPAMLGLKTDQEVLAELVRMKLPAVAALMDGHGVLWTLLV 253

Query: 185 TKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECF 244
           ++WFIC+F D+LPVETVLRIWDCLF EG KI+FRV+LTLIK H+  +LE      + + F
Sbjct: 254 SRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQEFILEASSIPDICDKF 313

Query: 245 KSMVRSPAVLNCHSFMS 261
           K + +   V  CH+FM 
Sbjct: 314 KQITKGDFVTECHAFMQ 330

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q4QQU7|GRTP1_RAT Growth hormone-regulated TBC protein 1 OS=Rattus norvegicus GN=Grtp1 PE=2 SV=1

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 133/195 (68%), Gaps = 2/195 (1%)

Query: 69  TDLPRTFPENIFFRNSLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEE 126
           TDL RTFP+N+ FR + +   Q+ L  +L  + L  +++GYCQG+N+IA  ++L+TK+EE
Sbjct: 66  TDLNRTFPDNVMFRKTADPCLQKTLYNVLLAYGLHNQDVGYCQGMNFIAGYLILITKNEE 125

Query: 127 NTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATK 186
            ++W+  +++ +   DYY+  + G+  D +VL+ELV++K+P +   +   GV W ++ ++
Sbjct: 126 ESFWLLDALVGRILPDYYSPAMLGLKTDQEVLAELVRMKLPAVAALMDGHGVLWTLLVSR 185

Query: 187 WFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKS 246
           WFIC+F D+LPVETVLRIWDCLF EG KI+FRV+LTLIK H+  +LE      + + FK 
Sbjct: 186 WFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQEFILEASSVPDICDKFKQ 245

Query: 247 MVRSPAVLNCHSFMS 261
           + +   V  CH+FM 
Sbjct: 246 ITKGDFVTECHTFMQ 260

May act as a GTPase-activating protein for Rab family protein(s).

Rattus norvegicus (taxid: 10116)

>sp|Q09445|GRTP6_CAEEL Growth hormone-regulated TBC protein 6 OS=Caenorhabditis elegans GN=tbc-6 PE=4 SV=3

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 3/201 (1%)

Query: 61  PD-IGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALIL 119
           PD + + I+ DLPRTFP+N F +     ++ L R L   A    ++GYCQGLN++A +IL
Sbjct: 106 PDEVIKQIKLDLPRTFPDNKFLKTE-GTRKTLGRALFAVAEHIPSVGYCQGLNFVAGVIL 164

Query: 120 LVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVP 179
           LV   E     +   ++++   +YY K + G+ RD+ VL  L++   P +   + K+ V 
Sbjct: 165 LVVNDESRAIDLLVHLVSQR-QEYYGKNMIGLRRDMHVLHSLLREHCPRVVVTLEKLDVG 223

Query: 180 WPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTT 239
             ++  KWF+C F + LP+ETVLR+WDCL  EG + LFR+++ L + +  A+  CE    
Sbjct: 224 LDMLVGKWFVCWFVESLPMETVLRLWDCLIYEGDEWLFRIAVALFRSNMIAISSCESIDQ 283

Query: 240 LVECFKSMVRSPAVLNCHSFM 260
           L+   +++  S A L CH  +
Sbjct: 284 LMTEVQNIGTSKAALYCHQLI 304

Caenorhabditis elegans (taxid: 6239)

>sp|Q8IV04|TB10C_HUMAN Carabin OS=Homo sapiens GN=TBC1D10C PE=1 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 12/268 (4%)

Query: 1   MYKKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILD 60
           M ++ KK K +      S      W ++  A   +K +        G Y    L     D
Sbjct: 78  MSRRYKKVKMQCRKGIPSALRARCWPLLCGAHVCQKNS-------PGTYQE--LAEAPGD 128

Query: 61  PDIGETIRTDLPRTFPENIFFRNSLEHQQQ-LSRILKVFALDEKNIGYCQGLNYIAALIL 119
           P   ETI  DL R FP +  F +   H QQ L ++LK + L     GYCQ    +AA++L
Sbjct: 129 PQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLL 188

Query: 120 LVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVP 179
           +    EE  +W    +   Y   YY   +  V  D +V   L++  +PH++ H+ +VGV 
Sbjct: 189 MHLPPEE-AFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGVG 247

Query: 180 WPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTT 239
             +   +WF+C+FA  LP  TVLR+WD    EG ++LFRV LTL++L      +      
Sbjct: 248 PLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACPG 307

Query: 240 LVECFKSMVR-SPAVLNCHSFMSGLNYI 266
           L+E   ++    PA L   +FMS ++ +
Sbjct: 308 LLETLGALRAIPPAQLQEEAFMSQVHSV 335

Inhibits the Ras signaling pathway through its intrinsic Ras GTPase-activating protein (GAP) activity. Acts as a negative feedback inhibitor of the calcineurin signaling pathway that also mediates crosstalk between calcineurin and Ras.

Homo sapiens (taxid: 9606)

>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 3/203 (1%)

Query: 37  VTHQTRH-YGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR-NSLEHQQQLSRI 94
           V  + RH    G Y   +   +  +      I  DL RTFP N  F   +     +L R+
Sbjct: 633 VHRRVRHLQAPGCYQELLARGRACEHPAARQIELDLNRTFPTNKHFTCPTSSFPDKLRRV 692

Query: 95  LKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYF-SDYYTKTLTGVVR 153
           L  F+     IGYCQGLN +AA+ LLV + EE+ +W   +++     ++YY+KTLT    
Sbjct: 693 LLAFSWQNPTIGYCQGLNRLAAIALLVLEDEESAFWCLVAIVETILPAEYYSKTLTASQV 752

Query: 154 DIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGP 213
           D  VL +L+  K+P L  H+ +  V   +I   WF+ +FAD L  + +LR+WD    EG 
Sbjct: 753 DQRVLQDLLSEKLPRLTAHLGQHRVDLSLITFNWFLVVFADSLISDILLRVWDAFLYEGT 812

Query: 214 KILFRVSLTLIKLHERALLECED 236
           K++FR +L + K +E A+L+ +D
Sbjct: 813 KVVFRYALAIFKYNEEAILQLQD 835

Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.

Mus musculus (taxid: 10090)

>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1

 Score =  127 bits (320), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 2/195 (1%)

Query: 44  YGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR-NSLEHQQQLSRILKVFALDE 102
           + +G Y   +   +  +      I  DL RTFP N  F   +     +L R+L  F+   
Sbjct: 643 HSSGCYQELLARGRACEHPAARQIELDLNRTFPTNKHFTCPTSSFPDKLRRVLLAFSWQN 702

Query: 103 KNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYF-SDYYTKTLTGVVRDIDVLSEL 161
             IGYCQGLN +AA+ LLV + EE+ +W   +++     ++YY+KTLT    D  VL +L
Sbjct: 703 PTIGYCQGLNRLAAIALLVLEDEESAFWCLVAIVETILPAEYYSKTLTASQVDQRVLQDL 762

Query: 162 VKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSL 221
           +  K+P L  H+ +  V   +I   WF+ +FAD L  + +LR+WD    EG K++FR +L
Sbjct: 763 LSEKLPRLTAHLGQRHVDLSLITFNWFLVIFADSLISDILLRVWDAFLYEGTKVVFRYAL 822

Query: 222 TLIKLHERALLECED 236
            + K +E A+L  +D
Sbjct: 823 AIFKYNEEAILRLQD 837

Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
307186141	338	Growth hormone-regulated TBC protein 1-A	0.685	0.683	0.516	3e-71
332030159	299	Growth hormone-regulated TBC protein 1-A	0.685	0.772	0.520	3e-71
350409592	339	PREDICTED: growth hormone-regulated TBC	0.673	0.669	0.524	5e-71
340713813	370	PREDICTED: growth hormone-regulated TBC	0.673	0.613	0.524	6e-71
322788371	335	hypothetical protein SINV_80461 [Solenop	0.676	0.680	0.518	1e-70
66508566	338	PREDICTED: growth hormone-regulated TBC	0.673	0.671	0.520	3e-70
383863677	338	PREDICTED: growth hormone-regulated TBC	0.599	0.597	0.589	6e-70
307205763	338	Growth hormone-regulated TBC protein 1-A	0.685	0.683	0.491	6e-69
345479946	338	PREDICTED: growth hormone-regulated TBC	0.682	0.680	0.514	1e-68
357616758	339	putative growth hormone regulated TBC pr	0.676	0.672	0.493	7e-68

>gi|307186141|gb|EFN71866.1| Growth hormone-regulated TBC protein 1-A [Camponotus floridanus]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 9/240 (3%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +W+ +S  + +K V+ +       G +         + +I E I+TDLPRTFP+NIFF N
Sbjct: 75  VWLAVSGGEEIKNVSPELYQKLLQGPH---------NTEIAEIIKTDLPRTFPDNIFFNN 125

Query: 84  SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 143
           +   Q QL  +L  FA   K +GYCQGLNYIA L+LLVTK EE  +W+ + +I+K   DY
Sbjct: 126 TENQQHQLYNVLLAFAHQNKTVGYCQGLNYIAGLLLLVTKSEETAFWLLKVLIDKILPDY 185

Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
           YT+T+ G++ DIDVL+ELV+IKMP +Y H++ +G+PW VI TKWF+C+FA+VLP+ET LR
Sbjct: 186 YTRTMDGLLTDIDVLAELVRIKMPDVYQHVTNLGLPWAVITTKWFVCLFAEVLPIETTLR 245

Query: 204 IWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGL 263
           IWDCLF EG KI+FRV+LTLIK +   LL C+DFTTL ECFK + +   VL CH FM  +
Sbjct: 246 IWDCLFYEGTKIIFRVALTLIKRNRSNLLACQDFTTLAECFKEITKDSIVLRCHEFMQSI 305

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030159|gb|EGI69953.1| Growth hormone-regulated TBC protein 1-A [Acromyrmex echinatior]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 167/240 (69%), Gaps = 9/240 (3%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +W+ +S  + +K  +          Y   +L+    + +  E I+TDLPRTFP+NIFF N
Sbjct: 36  VWLAVSGGEDMKNASPDL-------YQKLLLSPH--NAETAEIIKTDLPRTFPDNIFFNN 86

Query: 84  SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 143
           +   Q QL  +L  FA   K +GYCQGLNYIA L+LLVTK EE  +W+ + +I+K   DY
Sbjct: 87  TENQQHQLYNVLLAFAHQNKTVGYCQGLNYIAGLLLLVTKSEETAFWLLKVLIDKILPDY 146

Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
           YT T+ G++ DIDVL+ELV+IKMP +Y H++ VG+PWPVI TKWF+C+FA+VLP+ET LR
Sbjct: 147 YTCTMDGLLTDIDVLAELVRIKMPDVYQHVTNVGLPWPVITTKWFVCLFAEVLPIETTLR 206

Query: 204 IWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGL 263
           IWDCLF EG KI+FRV+LTLIK ++  LL C+DFTTL ECFK + +   VL CH FM  +
Sbjct: 207 IWDCLFYEGTKIIFRVALTLIKRNKSNLLACQDFTTLAECFKEITKDSIVLRCHEFMQSI 266

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409592|ref|XP_003488786.1| PREDICTED: growth hormone-regulated TBC protein 1-A-like [Bombus impatiens]

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 128/244 (52%), Positives = 165/244 (67%), Gaps = 17/244 (6%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDP----DIGETIRTDLPRTFPENI 79
           +W+ +S  + LK                  L  K+L P     + + I+TDLPRTFP+NI
Sbjct: 75  VWLSVSGGEELKNADPD-------------LYQKLLQPPHNKQVADVIKTDLPRTFPDNI 121

Query: 80  FFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY 139
           FF N+   Q QL  IL  FA   K +GYCQGLNYIA L+LLVTK EE  +W+ + +I K 
Sbjct: 122 FFNNTENQQYQLYNILLAFAHQNKTVGYCQGLNYIAGLLLLVTKSEETAFWLLKVLIEKI 181

Query: 140 FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVE 199
             DYYT T+ G++ DIDVL+ELVKIKMP +Y H++ +G+PWPVI TKWF+C+FA+VLP+E
Sbjct: 182 LPDYYTPTMDGLLTDIDVLAELVKIKMPDIYQHVTNIGLPWPVITTKWFVCLFAEVLPIE 241

Query: 200 TVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSF 259
           T LRIWDCLF EG KI+FRV+LTLIK ++  LL C+DFTTL ECFK + +   VL CH F
Sbjct: 242 TTLRIWDCLFYEGSKIIFRVALTLIKRNKCNLLACQDFTTLAECFKEITKDSIVLKCHDF 301

Query: 260 MSGL 263
           M  +
Sbjct: 302 MQSI 305

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713813|ref|XP_003395430.1| PREDICTED: growth hormone-regulated TBC protein 1-A-like [Bombus terrestris]

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 128/244 (52%), Positives = 165/244 (67%), Gaps = 17/244 (6%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDP----DIGETIRTDLPRTFPENI 79
           +W+ +S  + LK                  L  K+L P     + + I+TDLPRTFP+NI
Sbjct: 106 VWLSVSGGEELKNADPD-------------LYQKLLQPPHNKQVADVIKTDLPRTFPDNI 152

Query: 80  FFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY 139
           FF N+   Q QL  IL  FA   K +GYCQGLNYIA L+LLVTK EE  +W+ + +I K 
Sbjct: 153 FFNNTENQQYQLYNILLAFAHQNKTVGYCQGLNYIAGLLLLVTKSEETAFWLLKVLIEKI 212

Query: 140 FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVE 199
             DYYT T+ G++ DIDVL+ELVKIKMP +Y H++ +G+PWPVI TKWF+C+FA+VLP+E
Sbjct: 213 LPDYYTPTMDGLLTDIDVLAELVKIKMPDIYQHVTNIGLPWPVITTKWFVCLFAEVLPIE 272

Query: 200 TVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSF 259
           T LRIWDCLF EG KI+FRV+LTLIK ++  LL C+DFTTL ECFK + +   VL CH F
Sbjct: 273 TTLRIWDCLFYEGSKIIFRVALTLIKRNKCNLLACQDFTTLAECFKEITKDSIVLKCHDF 332

Query: 260 MSGL 263
           M  +
Sbjct: 333 MQSI 336

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788371|gb|EFZ14045.1| hypothetical protein SINV_80461 [Solenopsis invicta]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/243 (51%), Positives = 167/243 (68%), Gaps = 15/243 (6%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGET---IRTDLPRTFPENIF 80
           +W+ +S  + +K  +              +    +L P   ET   I+TDLPRTFP+NIF
Sbjct: 72  VWLAVSGGEDMKNASPD------------LYQKLLLSPHNAETVEIIKTDLPRTFPDNIF 119

Query: 81  FRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYF 140
           F N+   Q QL  +L  FA   K+IGYCQGLNYIA L+LLVTK+EE  +W+ + +I+K  
Sbjct: 120 FNNTENQQHQLYNVLLAFAHQNKSIGYCQGLNYIAGLLLLVTKNEETAFWLLKVLIDKIL 179

Query: 141 SDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVET 200
            DYYT T+ G++ DIDVL+ELV+IKMP +Y H++ VG+PWPVI TKWF+C+FA+VLP+ET
Sbjct: 180 PDYYTCTMDGLLTDIDVLAELVRIKMPDVYQHVTNVGLPWPVITTKWFVCLFAEVLPIET 239

Query: 201 VLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
            LRIWDCLF EG KI+FRV+LTLIK ++  LL C+DF TL ECFK + +   VL CH FM
Sbjct: 240 TLRIWDCLFYEGTKIIFRVALTLIKRNKSNLLACQDFATLAECFKEITKDSIVLRCHEFM 299

Query: 261 SGL 263
             +
Sbjct: 300 QSI 302

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508566|ref|XP_392575.2| PREDICTED: growth hormone-regulated TBC protein 1-A [Apis mellifera] gi|380024977|ref|XP_003696260.1| PREDICTED: growth hormone-regulated TBC protein 1-A-like [Apis florea]

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 165/244 (67%), Gaps = 17/244 (6%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDP----DIGETIRTDLPRTFPENI 79
           +W+ +S  + LK V                L  ++L P     + + I+TDLPRTFP+NI
Sbjct: 75  VWLSVSGGEELKNVDSD-------------LYQRLLQPPHNKQVADVIKTDLPRTFPDNI 121

Query: 80  FFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY 139
           FF N+   Q QL  IL  FA   K +GYCQGLNYIA L+LLVTK EE  +W+ + +I K 
Sbjct: 122 FFNNTENQQYQLYNILLAFAHQNKTVGYCQGLNYIAGLLLLVTKSEETAFWLLKILIEKI 181

Query: 140 FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVE 199
             DYYT T+ G++ DIDVL+ELVKIKMP +Y H++ +G+PW VI TKWF+C+FA+VLP+E
Sbjct: 182 LPDYYTPTMDGLLTDIDVLAELVKIKMPDIYQHVTNIGLPWAVITTKWFVCLFAEVLPIE 241

Query: 200 TVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSF 259
           T LRIWDCLF EG KI+FRV+LTLIK ++  LL C+DFTTL ECFK + +   VL CH F
Sbjct: 242 TTLRIWDCLFYEGSKIIFRVALTLIKRNKCNLLACQDFTTLAECFKEITKDSIVLKCHDF 301

Query: 260 MSGL 263
           M  +
Sbjct: 302 MQSI 305

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863677|ref|XP_003707306.1| PREDICTED: growth hormone-regulated TBC protein 1-A-like [Megachile rotundata]

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 152/202 (75%)

Query: 62  DIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLV 121
           ++   I+TDLPRTFP+NIFF N+   Q QL  IL  FA   K +GYCQGLNYIA L+LLV
Sbjct: 104 EVANIIKTDLPRTFPDNIFFNNTENQQYQLYNILLAFAHQNKTVGYCQGLNYIAGLLLLV 163

Query: 122 TKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWP 181
           TK EE  +W+ + +I K   DYYT T+ G++ DIDVL+ELV+IKMP +Y H++ +G+PWP
Sbjct: 164 TKSEETAFWLLKVLIEKILPDYYTPTMDGLLTDIDVLAELVRIKMPDIYQHVTNIGLPWP 223

Query: 182 VIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLV 241
           VI TKWF+C+FA+VLP+ET LRIWDCLF EG KI+FRV+LTLIK ++  LL C+DFTTL 
Sbjct: 224 VITTKWFVCLFAEVLPIETTLRIWDCLFYEGSKIIFRVALTLIKRNKCNLLACQDFTTLA 283

Query: 242 ECFKSMVRSPAVLNCHSFMSGL 263
           ECFK + +   VL CH FM  +
Sbjct: 284 ECFKEITKDSIVLKCHEFMQSI 305

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205763|gb|EFN83993.1| Growth hormone-regulated TBC protein 1-A [Harpegnathos saltator]

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 118/240 (49%), Positives = 168/240 (70%), Gaps = 9/240 (3%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +W+ +S  + ++ ++           Y  +L +   + ++ + I+TDLPRTFP+NIFF N
Sbjct: 75  VWLAVSGGEDMRNISPD--------LYERLLQSP-HNAEVADIIKTDLPRTFPDNIFFNN 125

Query: 84  SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 143
           +   Q +L  +L  FA   K +GYCQGLNYIA L+LLVTK EE  +W+ + +I+K   +Y
Sbjct: 126 TENQQHELYNVLLAFAHQNKTVGYCQGLNYIAGLLLLVTKSEETAFWLLKVLIDKILPEY 185

Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
           YT+T+ G++ DIDVL+ELV+IK+P +Y H++ VG+PWPVI TKWF+C+FA+VLP+ET LR
Sbjct: 186 YTRTMDGLLTDIDVLAELVRIKIPDVYQHVTNVGLPWPVITTKWFVCLFAEVLPIETTLR 245

Query: 204 IWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGL 263
           IWDCLF EG KI+FRV+LTLIK ++  LL C DF TL ECF+ + +   VL CH FM  +
Sbjct: 246 IWDCLFYEGTKIIFRVALTLIKRNKSNLLACHDFATLAECFREITKDSIVLQCHDFMQSI 305

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479946|ref|XP_001604418.2| PREDICTED: growth hormone-regulated TBC protein 1-A-like [Nasonia vitripennis]

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 164/241 (68%), Gaps = 11/241 (4%)

Query: 24  IWMIISEADTLK-KVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR 82
           +W+ +S  + LK K  +  +   TG +          D  + + I+TDLPRTFP+NIFF 
Sbjct: 75  VWLSVSGGEELKSKSPNLYQELLTGPH----------DSQVTDIIKTDLPRTFPDNIFFN 124

Query: 83  NSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSD 142
           N+  HQ+QL  IL  FA   + +GYCQGLNYIA L+LLVTK EE  +W+ + +I +   +
Sbjct: 125 NTDRHQRQLYNILLAFAHQNRQVGYCQGLNYIAGLLLLVTKSEETAFWLLKVLIEEILPE 184

Query: 143 YYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVL 202
           YY  T+ G++ DIDVL+ELVKIKMP +Y H++ +G+PW VI TKWFIC+FA+VLP ET L
Sbjct: 185 YYVPTMKGLITDIDVLAELVKIKMPDVYQHVTDMGLPWAVITTKWFICLFAEVLPTETTL 244

Query: 203 RIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSG 262
           RIWDCLF EG KI+FRV+LTLIK +   LL C+DFT L ECFK + +   VL CH FM  
Sbjct: 245 RIWDCLFYEGSKIVFRVALTLIKRNRENLLACQDFTELAECFKEITKDSIVLQCHDFMQS 304

Query: 263 L 263
           +
Sbjct: 305 I 305

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616758|gb|EHJ70386.1| putative growth hormone regulated TBC protein 1 [Danaus plexippus]

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 171/245 (69%), Gaps = 17/245 (6%)

Query: 23  SIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILD----PDIGETIRTDLPRTFPEN 78
           S+WM ISEA+ +K+ +               L  KILD     ++ + ++TDLPRTFP+N
Sbjct: 76  SVWMAISEAEKMKESSPD-------------LYQKILDGPFEKELVDLVKTDLPRTFPDN 122

Query: 79  IFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINK 138
           I+F     HQ  L  +L  +A + + +GYCQGLNYIA L+LL TK EE ++W+ + ++ K
Sbjct: 123 IYFSKEANHQTHLFHVLIAYAHNNRVVGYCQGLNYIAGLLLLATKSEETSFWLLKVLVEK 182

Query: 139 YFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPV 198
              DYYTKT+ G++ DI+VLSELVK K+P ++ H+  +G+PW VI TKWF+C+FA+VLP+
Sbjct: 183 ILPDYYTKTMDGLIVDIEVLSELVKSKVPDVHQHVINLGLPWAVITTKWFVCLFAEVLPI 242

Query: 199 ETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHS 258
           ETVLRIWDCLF EG KILFRV LTLI+ +  ++L C DFT+L ECFK++V++ + L+CH 
Sbjct: 243 ETVLRIWDCLFYEGSKILFRVCLTLIRNNRASILACNDFTSLAECFKAIVKNASALHCHE 302

Query: 259 FMSGL 263
           FM  +
Sbjct: 303 FMQSI 307

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
ZFIN|ZDB-GENE-040426-2733	356	grtp1a "growth hormone regulat	0.629	0.595	0.465	1.7e-52
ZFIN|ZDB-GENE-050417-346	349	grtp1b "growth hormone regulat	0.676	0.653	0.433	6.5e-51
FB|FBgn0038401	330	CG5916 [Drosophila melanogaste	0.617	0.630	0.433	1.5e-49
UNIPROTKB|D4A8V8	321	Adprhl1 "Growth hormone-regula	0.676	0.710	0.405	2.5e-49
UNIPROTKB|B9A6K2	344	TBC1D6 "Growth hormone-regulat	0.676	0.662	0.397	2.5e-49
UNIPROTKB|Q5TC63	336	GRTP1 "Growth hormone-regulate	0.676	0.678	0.397	2.5e-49
UNIPROTKB|F1MIH5	328	GRTP1 "Uncharacterized protein	0.676	0.695	0.425	1.8e-48
MGI|MGI:1914040	359	Grtp1 "GH regulated TBC protei	0.448	0.420	0.443	2.9e-48
UNIPROTKB|F1Q196	339	GRTP1 "Uncharacterized protein	0.629	0.625	0.441	4.7e-48
UNIPROTKB|D4A2E4	359	Grtp1 "Growth hormone-regulate	0.451	0.423	0.447	4.7e-48

ZFIN|ZDB-GENE-040426-2733 grtp1a "growth hormone regulated TBC protein 1a" [Danio rerio (taxid:7955)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 100/215 (46%), Positives = 147/215 (68%)

Query:    48 GYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEH--QQQLSRILKVFALDEKNI 105
             GYY  +L+    +P + E+IRTDL RTFP+NI+FR S E   QQ L  +L  +    K +
Sbjct:   112 GYYQSLLDTHH-EPKLEESIRTDLHRTFPDNIYFRKSAEPCLQQALYNVLVAYGHHNKAV 170

Query:   106 GYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIK 165
             GYCQG+N+IA  ++LV+K EE ++W+  +++++   DYYT  + G+  D +VL ELV++K
Sbjct:   171 GYCQGMNFIAGYLILVSKDEETSFWLMEALLSRILPDYYTPAMLGLKTDQEVLGELVRLK 230

Query:   166 MPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIK 225
              P ++  +   GV W ++ ++WFIC+F DVLPVETVLRIWDCLF EG KILFRV+LTLI+
Sbjct:   231 APAVWKLMQDQGVMWTLVVSRWFICLFIDVLPVETVLRIWDCLFYEGSKILFRVALTLIR 290

Query:   226 LHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
              H++ + E ++   + E FK + R   V +CH+FM
Sbjct:   291 HHQQEIAEAQNLPDVCERFKRITRGAFVEDCHTFM 325

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-050417-346 grtp1b "growth hormone regulated TBC protein 1b" [Danio rerio (taxid:7955)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 104/240 (43%), Positives = 154/240 (64%)

Query:    24 IWMIISEA-DTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR 82
             IWM  S A D L++           GYY  +L  +  DP I E I  D+ RTFP+NI FR
Sbjct:    88 IWMAFSGAQDQLER---------NPGYYQALLKTEQHDPKIEEVIHADMHRTFPDNIQFR 138

Query:    83 NSLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYF 140
             +S +   Q+ L  +L  +    K++GYCQG+N+IA  +L++TK EE ++W+  ++I +  
Sbjct:   139 HSSQSCLQKALFNVLLAYGHHNKDVGYCQGMNFIAGYLLIITKDEEKSFWLMVALIGRIL 198

Query:   141 SDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVET 200
              DYYT+T+ G+  D +VL ELVK K+P ++  +++  V W ++ ++WFIC++ DVLPVET
Sbjct:   199 PDYYTQTMLGLKVDQEVLGELVKSKVPAVWQTMNQHDVMWTLVVSRWFICLYVDVLPVET 258

Query:   201 VLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
             VLRIWDCLF EG KILFRV+LTLI+ ++  + + +    + E FK + R   V +CHSFM
Sbjct:   259 VLRIWDCLFYEGSKILFRVALTLIRHNQNLISQAKSLPEICEGFKQITRGEYVEDCHSFM 318

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

FB|FBgn0038401 CG5916 [Drosophila melanogaster (taxid:7227)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 92/212 (43%), Positives = 142/212 (66%)

Query:    53 MLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLN 112
             +L  +  D +I ++I  DLPRTFP+NI F      +Q+L  IL  +A   +++GYCQGLN
Sbjct:   100 LLRTEPFDKEISDSISIDLPRTFPDNIHFDMK---KQRLYNILIAYAHHNRDVGYCQGLN 156

Query:   113 YIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDH 172
             YIA L+L+VT  EE ++W+ + ++      Y++  +  ++RD+ V  ELV  ++P +  H
Sbjct:   157 YIAGLLLIVTDDEEKSFWLLKHIVENIVPQYHSHNMANLLRDLAVFRELVIRRIPAVNRH 216

Query:   173 ISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALL 232
             +  +G+P+PVIA+KWFIC+FA+VLPVETVLRIWDC+F EG KI+FR +LT+   H+ A+L
Sbjct:   217 VDNLGLPYPVIASKWFICIFAEVLPVETVLRIWDCVFAEGYKIVFRAALTMFVTHKNAIL 276

Query:   233 ECEDFTTLVECFK-SMVRSPAVLNCHSFMSGL 263
              C+D   L   F+ +M++   V +CH F+  +
Sbjct:   277 GCDDIAALANLFRDTMIQDNIVTDCHGFVEAM 308

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|D4A8V8 Adprhl1 "Growth hormone-regulated TBC protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 97/239 (40%), Positives = 151/239 (63%)

Query:    24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
             +WM +S A        Q +     GYY  +L  +     + E IRTDL RTFP+N+ FR 
Sbjct:    83 VWMAVSGA--------QAQMDQNPGYYHRLLEGES-SSRLEEAIRTDLNRTFPDNVMFRK 133

Query:    84 SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
             + +   Q+ L  +L  + L  +++GYCQG+N+IA  ++L+TK+EE ++W+  +++ +   
Sbjct:   134 TADPCLQKTLYNVLLAYGLHNQDVGYCQGMNFIAGYLILITKNEEESFWLLDALVGRILP 193

Query:   142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
             DYY+  + G+  D +VL+ELV++K+P +   +   GV W ++ ++WFIC+F D+LPVETV
Sbjct:   194 DYYSPAMLGLKTDQEVLAELVRMKLPAVAALMDGHGVLWTLLVSRWFICLFVDILPVETV 253

Query:   202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
             LRIWDCLF EG KI+FRV+LTLIK H+  +LE      + + FK + +   V  CH+FM
Sbjct:   254 LRIWDCLFNEGSKIIFRVALTLIKQHQEFILEASSVPDICDKFKQITKGDFVTECHTFM 312

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|B9A6K2 TBC1D6 "Growth hormone-regulated TBC protein 1" [Homo sapiens (taxid:9606)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 95/239 (39%), Positives = 152/239 (63%)

Query:    24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
             +WM++S A        Q +     GYY  +L  +  +P + + IRTDL RTFP+N+ FR 
Sbjct:    77 VWMVLSGA--------QAQMDQNPGYYHQLLQGE-RNPRLEDAIRTDLNRTFPDNVKFRK 127

Query:    84 SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
             + +   Q+ L  +L  +    + +GYCQG+N+IA  ++L+T +EE ++W+  +++ +   
Sbjct:   128 TTDPCLQRTLYNVLLAYGHHNQGVGYCQGMNFIAGYLILITNNEEESFWLLDALVGRILP 187

Query:   142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
             DYY+  + G+  D +VL ELV+ K+P +   + ++GV W ++ ++WFIC+F D+LPVETV
Sbjct:   188 DYYSPAMLGLKTDQEVLGELVRAKLPAVGALMERLGVLWTLLVSRWFICLFVDILPVETV 247

Query:   202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
             LRIWDCLF EG KI+FRV+LTLIK H+  +LE      + + FK + +   V+ CH+FM
Sbjct:   248 LRIWDCLFNEGSKIIFRVALTLIKQHQELILEATSVPDICDKFKQITKGSFVMECHTFM 306

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5TC63 GRTP1 "Growth hormone-regulated TBC protein 1" [Homo sapiens (taxid:9606)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 95/239 (39%), Positives = 152/239 (63%)

Query:    24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
             +WM++S A        Q +     GYY  +L  +  +P + + IRTDL RTFP+N+ FR 
Sbjct:    77 VWMVLSGA--------QAQMDQNPGYYHQLLQGE-RNPRLEDAIRTDLNRTFPDNVKFRK 127

Query:    84 SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS 141
             + +   Q+ L  +L  +    + +GYCQG+N+IA  ++L+T +EE ++W+  +++ +   
Sbjct:   128 TTDPCLQRTLYNVLLAYGHHNQGVGYCQGMNFIAGYLILITNNEEESFWLLDALVGRILP 187

Query:   142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
             DYY+  + G+  D +VL ELV+ K+P +   + ++GV W ++ ++WFIC+F D+LPVETV
Sbjct:   188 DYYSPAMLGLKTDQEVLGELVRAKLPAVGALMERLGVLWTLLVSRWFICLFVDILPVETV 247

Query:   202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
             LRIWDCLF EG KI+FRV+LTLIK H+  +LE      + + FK + +   V+ CH+FM
Sbjct:   248 LRIWDCLFNEGSKIIFRVALTLIKQHQELILEATSVPDICDKFKQITKGSFVMECHTFM 306

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MIH5 GRTP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 102/240 (42%), Positives = 146/240 (60%)

Query:    24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
             +WM +S A        Q R     GYY  +L  +     + E IRTD+ RTFP+N+ FR 
Sbjct:    68 VWMGVSGA--------QARMDRNPGYYQRLLQGE-RSASLEEAIRTDMNRTFPDNVRFRK 118

Query:    84 SLEH--QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYF- 140
               E   Q  L  +L  +      +GYCQG+N+IA  ++LVTK EE  +W+  +++ +   
Sbjct:   119 DAEPCLQGPLYNVLLAYGHHNHGVGYCQGMNFIAGYLILVTKSEEEAFWLLDALVGRILP 178

Query:   141 SDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVET 200
             +DYY+ ++ G+  D +VL ELV+ K+P +   +   GV W ++A++WFIC+F DVLPVET
Sbjct:   179 ADYYSPSMLGLKTDQEVLGELVRTKLPAVAALMHSHGVLWTLVASRWFICLFVDVLPVET 238

Query:   201 VLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
             VLR+WDCLF EG KI+FRV+LTL+K H+ ++LE      L E FK + R   V  CHSFM
Sbjct:   239 VLRVWDCLFSEGSKIIFRVALTLLKHHQASILEATSVPDLCEKFKEITRGRFVTECHSFM 298

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

MGI|MGI:1914040 Grtp1 "GH regulated TBC protein 1" [Mus musculus (taxid:10090)]

 Score = 395 (144.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 67/151 (44%), Positives = 105/151 (69%)

Query:   110 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHL 169
             G+N+IA  ++L+TK+EE ++W+  +++ +   DYY+  + G+  D +VL+ELV++K+P +
Sbjct:   179 GMNFIAGYLILITKNEEESFWLLDALVGRILPDYYSPAMLGLKTDQEVLAELVRMKLPAV 238

Query:   170 YDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHER 229
                +   GV W ++ ++WFIC+F D+LPVETVLRIWDCLF EG KI+FRV+LTLIK H+ 
Sbjct:   239 AALMDGHGVLWTLLVSRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQE 298

Query:   230 ALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
              +LE      + + FK + +   V  CH+FM
Sbjct:   299 FILEASSIPDICDKFKQITKGDFVTECHAFM 329

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|F1Q196 GRTP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 95/215 (44%), Positives = 137/215 (63%)

Query:    48 GYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEH--QQQLSRILKVFALDEKNI 105
             GYY  +L  +  D  + E IRTD+ RTFP+N+ FR + +   Q+ L  IL  +    + +
Sbjct:    96 GYYHRLLQGERSDR-LEEAIRTDMNRTFPDNVKFRKNADPCLQKTLYNILLAYGRHNEGV 154

Query:   106 GYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIK 165
             GYCQG+N+IA  +LL TK EE ++W+  +++ +   DYY   + G+  D +VL ELVK K
Sbjct:   155 GYCQGMNFIAGYLLLATKSEEESFWLLDALLGRILPDYYGPAMLGLKTDQEVLGELVKTK 214

Query:   166 MPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIK 225
             +P +   +   GV W ++ ++WFIC+F D+LPVETV RIWDCLF EG KI+FRV+LTLIK
Sbjct:   215 LPAVAALMDGHGVLWTLVVSRWFICLFVDILPVETVFRIWDCLFNEGSKIIFRVALTLIK 274

Query:   226 LHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
              H+  +LE      + E FK + R   V +CH+FM
Sbjct:   275 QHQGFILEATSVVDICERFKEITRGSLVTDCHTFM 309

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|D4A2E4 Grtp1 "Growth hormone-regulated TBC protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 399 (145.5 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 68/152 (44%), Positives = 106/152 (69%)

Query:   109 QGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPH 168
             QG+N+IA  ++L+TK+EE ++W+  +++ +   DYY+  + G+  D +VL+ELV++K+P 
Sbjct:   178 QGMNFIAGYLILITKNEEESFWLLDALVGRILPDYYSPAMLGLKTDQEVLAELVRMKLPA 237

Query:   169 LYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHE 228
             +   +   GV W ++ ++WFIC+F D+LPVETVLRIWDCLF EG KI+FRV+LTLIK H+
Sbjct:   238 VAALMDGHGVLWTLLVSRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQ 297

Query:   229 RALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
               +LE      + + FK + +   V  CH+FM
Sbjct:   298 EFILEASSVPDICDKFKQITKGDFVTECHTFM 329

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PBU5	GRT1A_DANRE	No assigned EC number	0.4375	0.6795	0.6432	yes	N/A
Q5TC63	GRTP1_HUMAN	No assigned EC number	0.3958	0.6795	0.6815	yes	N/A
Q9D3N8	GRTP1_MOUSE	No assigned EC number	0.3813	0.6795	0.6378	yes	N/A
Q6GL87	GRTP1_XENTR	No assigned EC number	0.3958	0.6824	0.6725	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	337
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	2e-59
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	3e-51
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	8e-43
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	6e-09
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	6e-08
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	3e-04

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score =  189 bits (483), Expect = 2e-59
 Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 9/209 (4%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +W ++    +  K               +    K+ D    E I  D+PRTFP + FF+N
Sbjct: 7   VWKLLLGNLSESKQRDS--------VSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKN 58

Query: 84  SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 143
             E QQQL RILK +++   ++GYCQG+N+IAA +LLV   EE  +W F S++     D+
Sbjct: 59  G-EGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDF 117

Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
           +  +  G+ RD+ V  EL+K   P LY H+ K+G+   + A+KWF+ +FA  LP+ETVLR
Sbjct: 118 FLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLR 177

Query: 204 IWDCLFVEGPKILFRVSLTLIKLHERALL 232
           +WD     G   LFRV+L ++K   + LL
Sbjct: 178 LWDLFLEGGKFFLFRVALAILKRFRKELL 206

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score =  168 bits (428), Expect = 3e-51
 Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 1/185 (0%)

Query: 49  YYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSL-EHQQQLSRILKVFALDEKNIGY 107
           Y   +      D  I   I  DL RTFPE+ FF++     Q+ L R+LK +AL    +GY
Sbjct: 32  YSRLLKETAPDDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGY 91

Query: 108 CQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMP 167
           CQG+N++AA +LLV + EE+ +W    ++ +Y  ++Y   ++G+  D+  L  LVK   P
Sbjct: 92  CQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDP 151

Query: 168 HLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLH 227
            LY H+  +G+   + A +WF+ +FA  LP+E VLRIWD LF EG   LFRV+L L+KLH
Sbjct: 152 DLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLH 211

Query: 228 ERALL 232
              LL
Sbjct: 212 RDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score =  154 bits (390), Expect = 8e-43
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%)

Query: 51  AFMLNNKILDPDIGETIRTDLPRTFPENIFFRN-SLEHQQQLSRILKVFALDEKNIGYCQ 109
                 KI   +I   I  DL RTFP+N  F+       + L R+LK ++L    +GY Q
Sbjct: 244 NLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQ 303

Query: 110 GLNYIAALILLVTKHEENTYWIFRSVI-NKYFSDYYTKTLTGVVRDIDVLSELVKIKMPH 168
           G+N++AA +LLV + EE  +W    ++ N     Y+ K L+G+ RD+ VL +LV+   P 
Sbjct: 304 GMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPE 363

Query: 169 LYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKL 226
           LY+H+ + GV   + A +WF+ +F    P+E  LRIWDCLF+EG  +LF+++L ++KL
Sbjct: 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421

Length = 496

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTK 320
           G+N+IAA +LLV   EE  +W F S++     D++  +  G+ RD+ V  EL+  +  +
Sbjct: 84  GMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDFFLPSFPGLQRDLYVFEELLKKHDPE 142

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTK 320
           G+N++AA +LLV + EE+ +W    ++ +Y  ++Y   ++G+  D+  L  LV +Y   
Sbjct: 94  GMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPD 152

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 262 GLNYIAALILLVTKHEENTYWIFRSVI-NKYFSDYYTKTLTGVVRDIDVLSELVNDYYTK 320
           G+N++AA +LLV + EE  +W    ++ N     Y+ K L+G+ RD+ VL +LV +   +
Sbjct: 304 GMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPE 363

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG2058|consensus	436		100.0
KOG4567|consensus	370		100.0
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	100.0
KOG2223|consensus	586		100.0
KOG1092|consensus	484		100.0
COG5210	496	GTPase-activating protein [General function predic	100.0
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	100.0
KOG2222|consensus	848		100.0
KOG1093|consensus	725		100.0
KOG4347|consensus	671		100.0
KOG3636|consensus	669		99.97
KOG4436|consensus	948		99.97
KOG2595|consensus	395		99.96
KOG1091|consensus	625		99.95
KOG2221|consensus	267		99.94
KOG1102|consensus	397		99.94
KOG2224|consensus	781		99.91
KOG2197|consensus	488		99.85
KOG4436|consensus	948		99.78
KOG2801|consensus	559		99.39
KOG1648|consensus	813		97.78
PF14961	1296	BROMI: Broad-minded protein	97.62
KOG2058|consensus	436		96.37

>KOG2058|consensus

Probab=100.00  E-value=6.7e-49  Score=360.79  Aligned_cols=239  Identities=35%  Similarity=0.676  Sum_probs=219.4

Q ss_pred             hhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCC-CCcccHHHHHhccCccCCCC-ccc
Q psy3328           4 KKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKI-LDPDIGETIRTDLPRTFPEN-IFF   81 (337)
Q Consensus         4 ~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~-~~~~~~~~I~~Dv~Rt~~~~-~~f   81 (337)
                      .+.++|.++|+|||+.+|+.||..+.|......         .+..|..++.... ..++..++|+.|+.||||++ +.|
T Consensus       145 ~s~elk~liRkGiP~~~R~~VW~~~~g~~~~~~---------~~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~  215 (436)
T KOG2058|consen  145 RSDELKRLIRKGIPPELRGEVWWVLSGARRQLN---------YPGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGF  215 (436)
T ss_pred             CcHHHHHHHHcCCChhhhhHHHHHHhcchhhcc---------CchhHHHHHhcCCCccchHHHHHHhccccccCCCcccC
Confidence            367899999999999999999999999222221         2789999998842 22369999999999999999 677


Q ss_pred             cCChhh-HHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHH
Q psy3328          82 RNSLEH-QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSE  160 (337)
Q Consensus        82 ~~~~~~-~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (337)
                      ...... ...|+|||.||+++||.||||||||++||++|+++.+|++|||+|..++.+++|+||++++.|.+.+..+++.
T Consensus       216 ~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~  295 (436)
T KOG2058|consen  216 DSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRE  295 (436)
T ss_pred             CCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHH
Confidence            764443 8999999999999999999999999999999999977999999999999999999999999999999999999


Q ss_pred             HHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHH
Q psy3328         161 LVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTL  240 (337)
Q Consensus       161 ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i  240 (337)
                      +++..+|+|+.|+...+++..+++++||+|+|++.+|.+++++|||++|++|++++|++++|+++..+++|+++.+..++
T Consensus       296 llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i  375 (436)
T KOG2058|consen  296 LLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEI  375 (436)
T ss_pred             HHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCC
Q psy3328         241 VECFKSMVRSP  251 (337)
Q Consensus       241 ~~~l~~~~~~~  251 (337)
                      .+.+..++...
T Consensus       376 ~~~~~~~~~~~  386 (436)
T KOG2058|consen  376 LRVLPDLTKRS  386 (436)
T ss_pred             HHHHHHHHHHh
Confidence            99998887643

>KOG4567|consensus

Probab=100.00  E-value=4.1e-41  Score=289.48  Aligned_cols=259  Identities=20%  Similarity=0.349  Sum_probs=224.9

Q ss_pred             hhHHHHHHhhcCCC--CchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC------------------------
Q psy3328           4 KKKKKKEEAEIKHT--STFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK------------------------   57 (337)
Q Consensus         4 ~~~klk~~~~~GiP--~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~------------------------   57 (337)
                      +-++++..+..|+|  ..+|+.+|+.+||+.+.....|.....+.++.|...++..                        
T Consensus        24 d~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhPl  103 (370)
T KOG4567|consen   24 DLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHPL  103 (370)
T ss_pred             hHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCCC
Confidence            45789999999999  6899999999999999888888887777778887766542                        


Q ss_pred             -----------CCCcccHHHHHhccCccCCCCccccCChh------------------------h--HHHHHHHHHHHHh
Q psy3328          58 -----------ILDPDIGETIRTDLPRTFPENIFFRNSLE------------------------H--QQQLSRILKVFAL  100 (337)
Q Consensus        58 -----------~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~------------------------~--~~~L~~iL~~~~~  100 (337)
                                 ..+.+...||++|+.||.|+.++|.....                        +  ....+|||..||+
T Consensus       104 s~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAK  183 (370)
T KOG4567|consen  104 SLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAK  183 (370)
T ss_pred             CCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhh
Confidence                       23446789999999999999888763110                        1  2346899999999


Q ss_pred             hcCCCCcccchHHHHHHHHhhcC----------ChhHHHHHHHHHHHHhhhhhc----cCCchhhhhhHHHHHHHHHhhC
Q psy3328         101 DEKNIGYCQGLNYIAALILLVTK----------HEENTYWIFRSVINKYFSDYY----TKTLTGVVRDIDVLSELVKIKM  166 (337)
Q Consensus       101 ~~~~i~Y~QG~~~i~~~ll~~~~----------~e~~af~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~  166 (337)
                      .||.++|+||||+|+||+++++.          .|+|||.||..+|.. ++++|    ..+..|++..+..+..+++++|
T Consensus       184 LNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMse-irDnf~k~LDdS~~GI~~~Msr~~~~lk~~D  262 (370)
T KOG4567|consen  184 LNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSE-IRDNFIKTLDDSVGGIHFLMSRLSELLKKHD  262 (370)
T ss_pred             cCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHHHhh
Confidence            99999999999999999999984          379999999999988 45444    3556778888999999999999


Q ss_pred             hhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCCh--HHHHHHHHHHHHcHHHHhCCCCHHHHHHHH
Q psy3328         167 PHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPK--ILFRVSLTLIKLHERALLECEDFTTLVECF  244 (337)
Q Consensus       167 P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~--~l~~~~lail~~~~~~il~~~~~~~i~~~l  244 (337)
                      -+||.||++.++.|..|+++|+..+++.+||+++++++||.+|+....  ++.++|.|+++..|+.|++ .|+..-+++|
T Consensus       263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~-~DF~~nmkLL  341 (370)
T KOG4567|consen  263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILE-GDFTVNMKLL  341 (370)
T ss_pred             HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHH
Confidence            999999999999999999999999999999999999999999998665  8999999999999999998 4999999999


Q ss_pred             HcCCCCCcccccchhhhhHHHHHH
Q psy3328         245 KSMVRSPAVLNCHSFMSGLNYIAA  268 (337)
Q Consensus       245 ~~~~~~~~~~d~~~~i~~a~~~~~  268 (337)
                      ++.|.    +|+..++..|-+++.
T Consensus       342 Q~yp~----tdi~~~l~~A~~Lr~  361 (370)
T KOG4567|consen  342 QNYPT----TDISKMLAVADSLRD  361 (370)
T ss_pred             hcCCC----CCHHHHHHHHHHHHh
Confidence            99987    799999888877775

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=100.00  E-value=7.1e-41  Score=287.49  Aligned_cols=195  Identities=34%  Similarity=0.687  Sum_probs=176.1

Q ss_pred             hhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCC-cccHHHHHhccCccCCCCccccCCh-hhHH
Q psy3328          12 AEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILD-PDIGETIRTDLPRTFPENIFFRNSL-EHQQ   89 (337)
Q Consensus        12 ~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~-~~~~~~I~~Dv~Rt~~~~~~f~~~~-~~~~   89 (337)
                      .++|||+++|+.+|+.++|+.....+       .....|+++++..... ....++|++|+.||+|+++.|.... ..++
T Consensus         1 ~~~Gip~~~R~~vW~~ll~~~~~~~~-------~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~   73 (199)
T smart00164        1 VRKGVPPSLRGVVWKLLLNAQPMDTS-------ADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQE   73 (199)
T ss_pred             CCCCCCHHHHHHHHHHHhCCchhhhc-------ccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHH
Confidence            36899999999999999999987643       1268899999884322 2357999999999999999998633 4699


Q ss_pred             HHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhh
Q psy3328          90 QLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHL  169 (337)
Q Consensus        90 ~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L  169 (337)
                      .|.|||.+|+.++|++||+|||++||++++.++.+|++|||+|.++|++..+++|.++.+++...+..++.++++++|+|
T Consensus        74 ~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l  153 (199)
T smart00164       74 SLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDL  153 (199)
T ss_pred             HHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHH
Confidence            99999999999999999999999999999999977999999999999998778888888899999999999999999999


Q ss_pred             hhhhhh-cCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCC
Q psy3328         170 YDHISK-VGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGP  213 (337)
Q Consensus       170 ~~hl~~-~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~  213 (337)
                      ++||.+ .|+++..|+.+|++|+|++.+|++.+.++||.++.+|+
T Consensus       154 ~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~  198 (199)
T smart00164      154 YKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS  198 (199)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence            999996 99999999999999999999999999999999999986

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>KOG2223|consensus

Probab=100.00  E-value=3.1e-38  Score=281.78  Aligned_cols=236  Identities=20%  Similarity=0.416  Sum_probs=210.9

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC----------------CCCcccHHH
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK----------------ILDPDIGET   66 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~----------------~~~~~~~~~   66 (337)
                      +++++.+++.+.|||+..|++||....|..-....          +.|...+...                ........+
T Consensus       289 ~~SrR~relWwQGiP~~VRGkvW~laIGNel~it~----------elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~  358 (586)
T KOG2223|consen  289 LKSRRVRELWWQGIPPSVRGKVWSLAIGNELNITY----------ELFDIALARAKEREAKSLAEQMSNSAADREASVEL  358 (586)
T ss_pred             HhhHHHHHHHHccCChhhcchhhHhhhCcccccCH----------HHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhh
Confidence            56789999999999999999999999986443221          2232222211                223456789


Q ss_pred             HHhccCccCCCCccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhh-hhcc
Q psy3328          67 IRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS-DYYT  145 (337)
Q Consensus        67 I~~Dv~Rt~~~~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~-~~~~  145 (337)
                      |+.|+.||||+...|+....-...|..+|.||+.|.|++||+|||.+|+|+|++.+ ++.+||.+|.+++++.++ .||.
T Consensus       359 i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~  437 (586)
T KOG2223|consen  359 IKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFR  437 (586)
T ss_pred             eeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHh
Confidence            99999999999999998555599999999999999999999999999999999999 899999999999999766 8999


Q ss_pred             CCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q psy3328         146 KTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIK  225 (337)
Q Consensus       146 ~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~  225 (337)
                      .+.+.+...+..|+..+++..|+|+.||.+.++.|+.|+..|+.++|+..+|++..+||||+|+.+|..|+|+.+++|++
T Consensus       438 ~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlk  517 (586)
T KOG2223|consen  438 VDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILK  517 (586)
T ss_pred             cCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcHHHHhCCCCHHHHHHHHHcCCCC
Q psy3328         226 LHERALLECEDFTTLVECFKSMVRS  250 (337)
Q Consensus       226 ~~~~~il~~~~~~~i~~~l~~~~~~  250 (337)
                      .+++.++.+ |+..+.++|..+|.+
T Consensus       518 lyepkLl~m-Df~~~~qfLtklp~d  541 (586)
T KOG2223|consen  518 LYEPKLLVM-DFIHVAQFLTKLPED  541 (586)
T ss_pred             HccchHhhh-hHHHHHHHHHhCccc
Confidence            999999986 999999999998865

>KOG1092|consensus

Probab=100.00  E-value=3.4e-38  Score=281.32  Aligned_cols=265  Identities=21%  Similarity=0.330  Sum_probs=232.2

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-------CCCcccHHHHHhccCccC
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-------ILDPDIGETIRTDLPRTF   75 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-------~~~~~~~~~I~~Dv~Rt~   75 (337)
                      +.-++++++|..|||..+|+.+|+.++|+.+...+.++-........|.+++.+.       ..+.+..+||.-|+.|+.
T Consensus       176 id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm~  255 (484)
T KOG1092|consen  176 IDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRMN  255 (484)
T ss_pred             ccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCCC
Confidence            4568999999999999999999999999988877654443333455666665542       345568999999999999


Q ss_pred             CCCccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcC-------------------------ChhHHHH
Q psy3328          76 PENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTK-------------------------HEENTYW  130 (337)
Q Consensus        76 ~~~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~-------------------------~e~~af~  130 (337)
                      |.-+.|.. +..++.++|||..++.++|..||+||.++++.|++.++.                         -|+||||
T Consensus       256 p~~~l~q~-~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyW  334 (484)
T KOG1092|consen  256 PHIPLFQQ-KIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYW  334 (484)
T ss_pred             ccccchhh-HHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHH
Confidence            99888887 566999999999999999999999999999998887752                         1789999


Q ss_pred             HHHHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhh
Q psy3328         131 IFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFV  210 (337)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~  210 (337)
                      |+.+|++. +++.|....+|++...+.++.+++..|+.+++||..+|++..+|+++|+.++|.+++|+..++|+||-|++
T Consensus       335 ClskLLD~-IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~a  413 (484)
T KOG1092|consen  335 CLSKLLDG-IQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLA  413 (484)
T ss_pred             HHHHHHHH-hhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhc
Confidence            99999998 78888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCh---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHcCCCCCc-ccccchhhhhHHHHHHHH
Q psy3328         211 EGPK---ILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPA-VLNCHSFMSGLNYIAALI  270 (337)
Q Consensus       211 ~g~~---~l~~~~lail~~~~~~il~~~~~~~i~~~l~~~~~~~~-~~d~~~~i~~a~~~~~~~  270 (337)
                      +++.   |+.|+|+|.|..++++|++ .|+.+++.+|+++|...+ ..+++-++.+|+......
T Consensus       414 E~dgf~~FhvYvcAAFL~kW~~eL~e-~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f  476 (484)
T KOG1092|consen  414 EPDGFNEFHVYVCAAFLLKWSSELME-NDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVF  476 (484)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9654   8999999999999999996 599999999999998663 477888888888777644

>COG5210 GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=2.8e-37  Score=298.41  Aligned_cols=239  Identities=32%  Similarity=0.605  Sum_probs=213.8

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC---CCCc-ccHHHHHhccCccCCCC
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK---ILDP-DIGETIRTDLPRTFPEN   78 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~---~~~~-~~~~~I~~Dv~Rt~~~~   78 (337)
                      +...+++.+++.|||+.+|+.+|..++|+......        ....|..+.+..   .... ....+|++|+.||++.+
T Consensus       200 ~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~--------~~~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~  271 (496)
T COG5210         200 VQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDK--------NPGLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDN  271 (496)
T ss_pred             hhHHHHHHHHHhcCChHhhhhhHHHHhccchhhcc--------CchHHHHHHHHHHhcCCCcHHHHHHHHcccccccccc
Confidence            35678999999999999999999999999887776        667777777632   1222 36999999999999999


Q ss_pred             ccccCChhhHH-HHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHH-HhhhhhccCCchhhhhhHH
Q psy3328          79 IFFRNSLEHQQ-QLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVIN-KYFSDYYTKTLTGVVRDID  156 (337)
Q Consensus        79 ~~f~~~~~~~~-~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~-~~~~~~~~~~~~~~~~~~~  156 (337)
                      ..|+.....+. .|+|||.+|+.++|++||||||++++|+|+.++.+|++||||+++++. .+++++|.++..|+...+.
T Consensus       272 ~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~  351 (496)
T COG5210         272 SLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLK  351 (496)
T ss_pred             ccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHH
Confidence            99987433333 599999999999999999999999999999999669999999999999 4499999999999999999


Q ss_pred             HHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCC
Q psy3328         157 VLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECED  236 (337)
Q Consensus       157 ~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~  236 (337)
                      .+..+++..+|++|+|+...|+....|+++||+++|.+.+|++.++|+||++|.+|..+++.+++|++...+..++...+
T Consensus       352 ~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~  431 (496)
T COG5210         352 VLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDS  431 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             HHHHHHHHHcCCC
Q psy3328         237 FTTLVECFKSMVR  249 (337)
Q Consensus       237 ~~~i~~~l~~~~~  249 (337)
                      ...+...+.....
T Consensus       432 ~~~~~~~~~~~~~  444 (496)
T COG5210         432 DELLDLLLKQLFL  444 (496)
T ss_pred             hhHHHHHHHhhhh
Confidence            7776666665543

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=100.00  E-value=2e-36  Score=262.61  Aligned_cols=211  Identities=32%  Similarity=0.649  Sum_probs=172.0

Q ss_pred             CchHHHHHHHHhcChH-hhhhhhhcccCCChhHH-HHHHhcCCCCcccHHHHHhccCccCCCCccccCChhhHHHHHHHH
Q psy3328          18 STFDFSIWMIISEADT-LKKVTHQTRHYGTGGYY-AFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRIL   95 (337)
Q Consensus        18 ~~~R~~vW~~llg~~~-~~~~~~~~~~~~~~~~y-~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~iL   95 (337)
                      +++|+.+|+.++|+.+ ......... . ..... .........+.+..++|++|+.||++....+.. ...+..|.+||
T Consensus         1 ~~~R~~vW~~ll~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~-~~~~~~l~~iL   77 (214)
T PF00566_consen    1 HSLRGQVWKILLGIEPNYSNNYQDEK-N-QWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKN-EQNQKSLERIL   77 (214)
T ss_dssp             -CCHHHHHHHHCTCSCHHHHHHHHHH-H-HHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHccchhhhhhHHHHh-h-hhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhh-cchHHHHHHHH
Confidence            3689999999999964 000000000 0 01111 111122145667799999999999995544444 56799999999


Q ss_pred             HHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhhhhh
Q psy3328          96 KVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISK  175 (337)
Q Consensus        96 ~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~  175 (337)
                      .+|+.++|++||+|||++|+++++.+..+|++|||++.++++..+++++.++.+++...+..++.++++++|++++||.+
T Consensus        78 ~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~  157 (214)
T PF00566_consen   78 SAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQ  157 (214)
T ss_dssp             HHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhh
Confidence            99999999999999999999999977779999999999999666889999998999999999999999999999999999


Q ss_pred             cCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChH-HHHHHHHHHHHcHHHHh
Q psy3328         176 VGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKI-LFRVSLTLIKLHERALL  232 (337)
Q Consensus       176 ~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~-l~~~~lail~~~~~~il  232 (337)
                      .|+++..|+.+|+.|+|++.+|.+.+.++|| ++.+|+++ ++++++|++...|++||
T Consensus       158 ~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~~~~~il  214 (214)
T PF00566_consen  158 LGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKYLRDQIL  214 (214)
T ss_dssp             TT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred             hhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999 77799886 99999999999999986

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2222|consensus

Probab=100.00  E-value=1.4e-36  Score=274.04  Aligned_cols=253  Identities=28%  Similarity=0.508  Sum_probs=230.3

Q ss_pred             CchhhHHHHHHhhcC-CCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-CCCcccHHHHHhccCccCCCC
Q psy3328           1 MYKKKKKKKEEAEIK-HTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-ILDPDIGETIRTDLPRTFPEN   78 (337)
Q Consensus         1 ~~~~~~klk~~~~~G-iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-~~~~~~~~~I~~Dv~Rt~~~~   78 (337)
                      |.-+++|++++.+.| ||..+|+.+|+.|.|...+...        ....|.+++..+ .....+..||++|+-|+.|++
T Consensus       155 ~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~--------ae~sy~~ilk~~andk~~~~~qiekdllr~lpnn  226 (848)
T KOG2222|consen  155 MELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKD--------AETSYEDILKACANDKLMIGKQIEKDLLRILPNN  226 (848)
T ss_pred             cccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhcc--------ccccHHHHHHHhcccccchhHHHHHHHHHhCCCc
Confidence            566889999999985 9999999999999999887766        457799988875 344567899999999999999


Q ss_pred             ccccCChh-hHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhh-hhccCCchhhhhhHH
Q psy3328          79 IFFRNSLE-HQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFS-DYYTKTLTGVVRDID  156 (337)
Q Consensus        79 ~~f~~~~~-~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~-~~~~~~~~~~~~~~~  156 (337)
                      .+|...+. +...|+|||.+.++..|++||||||..|+|.+++++ .|+.|||++.+++...+| +||++..-|++..-+
T Consensus       227 ~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfysqtllgiqader  305 (848)
T KOG2222|consen  227 ACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYSQTLLGIQADER  305 (848)
T ss_pred             ceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhhhhHhccchhHH
Confidence            99987443 499999999999999999999999999999999999 899999999999999988 999999999999999


Q ss_pred             HHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCC--
Q psy3328         157 VLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLEC--  234 (337)
Q Consensus       157 ~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~--  234 (337)
                      +...++.-|.|.+-+.|....++.++....||+|+|++.+....++|+||+||.+|...+|.+.++|++.-+.+|...  
T Consensus       306 v~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmkeqdi~~iae  385 (848)
T KOG2222|consen  306 VMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKEQDIKEIAE  385 (848)
T ss_pred             HHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988765  


Q ss_pred             --CCHHHHHHHHHcCCCCCcccccchhhhhHH
Q psy3328         235 --EDFTTLVECFKSMVRSPAVLNCHSFMSGLN  264 (337)
Q Consensus       235 --~~~~~i~~~l~~~~~~~~~~d~~~~i~~a~  264 (337)
                        ++..++...+.++|..  ..|++.++..+-
T Consensus       386 ttensa~if~als~ip~~--vtdve~l~~~~~  415 (848)
T KOG2222|consen  386 TTENSADIFNALSDIPAE--VTDVEKLFEQAG  415 (848)
T ss_pred             hcccHHHHHHHHHhCCch--hhhHHHHHHHHh
Confidence              6889999999999864  578888877763

>KOG1093|consensus

Probab=100.00  E-value=3.4e-36  Score=277.22  Aligned_cols=249  Identities=20%  Similarity=0.378  Sum_probs=222.7

Q ss_pred             hhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCccccC
Q psy3328           4 KKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN   83 (337)
Q Consensus         4 ~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~   83 (337)
                      +..++-...+.|+|+.+|+.+|..|||+......            +..++++ .......+||+.|+.|+.........
T Consensus       344 k~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~~a------------~y~~IDk-~Ts~~tdrqievdiprchQyd~~lsS  410 (725)
T KOG1093|consen  344 KRLQILREAYVDVPPLYRGFIWAALLQLEENHTA------------FYTLIDK-GTSHSTDRQIEVDIPRCHQYDELLSS  410 (725)
T ss_pred             HHHHHHHHhccCCChhHhHHHHHHHhcCccccch------------hhhhhhc-CCCCcchhhhhcccchhhhcccccCC
Confidence            3445556667789999999999999998875432            4456777 56778899999999999987666665


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhc-CChhHHHHHHHHHHHHhhhhhccC-CchhhhhhHHHHHHH
Q psy3328          84 SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVT-KHEENTYWIFRSVINKYFSDYYTK-TLTGVVRDIDVLSEL  161 (337)
Q Consensus        84 ~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~-~~e~~af~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l  161 (337)
                       +.+.+.|+|+|.||+..+|...|.||+..+++||+... .+|.-||.|+..++-+|+++||.. +..-+...+..|.++
T Consensus       411 -p~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~l  489 (725)
T KOG1093|consen  411 -PKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQL  489 (725)
T ss_pred             -HHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence             67899999999999999999999999999999998864 589999999999999999988877 566677889999999


Q ss_pred             HHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHHH
Q psy3328         162 VKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLV  241 (337)
Q Consensus       162 l~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i~  241 (337)
                      +..|||+|++||...|+.++.|+++||.|+|++++|+..++.+||..+..++.|.+++++|++++.|+.++++ ++.|.+
T Consensus       490 ~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~lR~~LLa~-nfne~i  568 (725)
T KOG1093|consen  490 LAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQLRDPLLAC-NFNECI  568 (725)
T ss_pred             HHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhhhhhhC-Cchhhe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997 999999


Q ss_pred             HHHHcCCCCCcccccchhhhhHHHHHHHHH
Q psy3328         242 ECFKSMVRSPAVLNCHSFMSGLNYIAALIL  271 (337)
Q Consensus       242 ~~l~~~~~~~~~~d~~~~i~~a~~~~~~~~  271 (337)
                      .+|.+.|+    +|++..|++.+++.+..+
T Consensus       569 llf~d~pd----ldId~~Ires~~l~e~tP  594 (725)
T KOG1093|consen  569 LLFSDLPD----LDIDVCIRESYHLMETTP  594 (725)
T ss_pred             eeeccCCc----ccHHHHHHHHhhhhhCCC
Confidence            99999984    899999999999887553

>KOG4347|consensus

Probab=100.00  E-value=5.1e-33  Score=260.39  Aligned_cols=233  Identities=27%  Similarity=0.538  Sum_probs=216.5

Q ss_pred             hhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-CCCcccHHHHHhccCccCCCCcccc
Q psy3328           4 KKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-ILDPDIGETIRTDLPRTFPENIFFR   82 (337)
Q Consensus         4 ~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-~~~~~~~~~I~~Dv~Rt~~~~~~f~   82 (337)
                      ...+++++++.|+|++.|+.+|..+.|.-.....        +++.|.++++.. .......+.|++|+.|..|.++-|+
T Consensus       191 qt~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~--------~~Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q  262 (671)
T KOG4347|consen  191 QTILLRKLLYNGFPEDPRGEIWYLASGAVASLLL--------NPGEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQ  262 (671)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHhhhHHHHHhhc--------CcHHhhhhhhcccCCcccccccccCCCCCCCCcchhhh
Confidence            3567889999999999999999999998887777        899999999885 3456788999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHHHH
Q psy3328          83 NSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELV  162 (337)
Q Consensus        83 ~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll  162 (337)
                      . ..+...|+|||.||++.||+|||||-||-+++.++.++ .|++|||+++.+.+.++|+|+.....|......+|+.++
T Consensus       263 ~-e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lv  340 (671)
T KOG4347|consen  263 S-EPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELV  340 (671)
T ss_pred             C-CCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence            8 56788999999999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             HhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHHHH
Q psy3328         163 KIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVE  242 (337)
Q Consensus       163 ~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i~~  242 (337)
                      +.+.|.++.|+...| ...+...+||+|+|....|++..++|.|+||.+|++++|-+++||+..+.+.|++++|-.+.+.
T Consensus       341 e~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~~~il~~~dDge~~~  419 (671)
T KOG4347|consen  341 EDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNAERILSATDDGEAMM  419 (671)
T ss_pred             HHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhHHHhcccCCchHHHH
Confidence            999999999999999 6678999999999999999999999999999999999999999999999999999988888886


Q ss_pred             HHHcC
Q psy3328         243 CFKSM  247 (337)
Q Consensus       243 ~l~~~  247 (337)
                      .+.+.
T Consensus       420 vl~~y  424 (671)
T KOG4347|consen  420 VLGNY  424 (671)
T ss_pred             HHHHH
Confidence            66644

>KOG3636|consensus

Probab=99.97  E-value=3.4e-31  Score=237.59  Aligned_cols=258  Identities=14%  Similarity=0.223  Sum_probs=221.9

Q ss_pred             HHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCccccCChh-hHHHHHHHHHHHHhh
Q psy3328          23 SIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLE-HQQQLSRILKVFALD  101 (337)
Q Consensus        23 ~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~-~~~~L~~iL~~~~~~  101 (337)
                      ..|+++||+..+...         ...|+++.+.     +.+.++++|+.|.......-++... ....|+.+++.||+ 
T Consensus        40 ~~W~~~L~V~~K~d~---------l~~wd~iydL-----p~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-  104 (669)
T KOG3636|consen   40 SDWMRLLGVSMKPNP---------LDDWDQIYDL-----PNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-  104 (669)
T ss_pred             HHHHHHhcccCCCCc---------hhhHHHHhCC-----chhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-
Confidence            349999999988776         6788888888     7899999999988765443333212 26689999999998 


Q ss_pred             cCCCCccc--chHHHHHHHHhhcCChhHHHHHHHHHHHHhhh-hhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCC
Q psy3328         102 EKNIGYCQ--GLNYIAALILLVTKHEENTYWIFRSVINKYFS-DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGV  178 (337)
Q Consensus       102 ~~~i~Y~Q--G~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i  178 (337)
                      +.++.|..  ||..++-|+++...+.++.|++|.+++++|+| ++-.++.+     ++.|+.+|++|+|+|++||++..+
T Consensus       105 ~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~-----Fh~FRLLlqYHdPelc~~Ldtkki  179 (669)
T KOG3636|consen  105 KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQI-----FHLFRLLLQYHDPELCNHLDTKKI  179 (669)
T ss_pred             ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCcc-----chHHHHHHHhcCHHHhhhhhcccc
Confidence            78899998  99999999999988999999999999999988 77766666     899999999999999999999999


Q ss_pred             CcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCCh-HHHHHHHHHHHHcHHHHhCC--CCHHHHHHHHHcCCCCCcccc
Q psy3328         179 PWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPK-ILFRVSLTLIKLHERALLEC--EDFTTLVECFKSMVRSPAVLN  255 (337)
Q Consensus       179 ~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~-~l~~~~lail~~~~~~il~~--~~~~~i~~~l~~~~~~~~~~d  255 (337)
                      +|++|+..||.++|+...+.+.+..+||.|+..+++ ++||+++.||++.|++|++.  ++.++++++|.++|......|
T Consensus       180 tPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eD  259 (669)
T KOG3636|consen  180 TPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVED  259 (669)
T ss_pred             CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccccc
Confidence            999999999999999999999999999999999999 68899999999999999976  578999999999999989999


Q ss_pred             cchhhhhHHHHHHHHHHhhhccchhHHHHHHHHhhhhhhhhchhhhhhhhhHHHHHHH
Q psy3328         256 CHSFMSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSEL  313 (337)
Q Consensus       256 ~~~~i~~a~~~~~~~~l~~k~~~~~y~~~~~~i~~~~~~~~~~~~~~l~~d~~~l~~l  313 (337)
                      +.+|    +.++..+..+++         .++.+.+..-.||+.+-+.+.+..+++|-
T Consensus       260 vpDf----fsLAqyY~~KTP---------~sfrkD~~~~lfGn~~~~~~~~~~~~sqa  304 (669)
T KOG3636|consen  260 VPDF----FSLAQYYSDKTP---------ESFRKDFHYILFGNANFDEEVKEIQMSQA  304 (669)
T ss_pred             chhH----HHHHHHHhhcCh---------HHhhhhhhHhhhcCCCccchhhhhHHhhh
Confidence            9999    666666655666         66667767777887777777776666653

>KOG4436|consensus

Probab=99.97  E-value=3.1e-29  Score=238.64  Aligned_cols=258  Identities=24%  Similarity=0.459  Sum_probs=218.4

Q ss_pred             hhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCC--ChhHHHHHHhcCCCCcccHHHHHhccCccCCCCccc
Q psy3328           4 KKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYG--TGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFF   81 (337)
Q Consensus         4 ~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~--~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f   81 (337)
                      ..+++--+++.|||...|+.+|..+.--....   +.....+  ..-.|..++..   -.+.++.|..|+-||||++++|
T Consensus       566 d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~---~~l~~~kr~~~~p~~~llkq---Lte~qhAi~idlgrtfp~h~~~  639 (948)
T KOG4436|consen  566 DMEDLHSALRTGVPRSRRGEIWTFLAEQHSLN---HALPDKKRPPDFPYKELLKQ---LTEQQHAILIDLGRTFPTHPYF  639 (948)
T ss_pred             cHHHHHHHHHccCchhhhHHHHHHHHHHHHHh---ccCCcccCCCCCChHHHHHH---HHHHHHHHHHhhccccCCCHHH
Confidence            45667778899999999999999986322221   1221111  12235566655   2345788999999999999999


Q ss_pred             cCCh-hhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-hhhhccCCchhhhhhHHHHH
Q psy3328          82 RNSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLS  159 (337)
Q Consensus        82 ~~~~-~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~  159 (337)
                      ...- .++.++.++|.+|+..+|++|||||..++|++||+.+ +|+.||.++..+|... ++.-+.+++..++..+..+.
T Consensus       640 ~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLs  718 (948)
T KOG4436|consen  640 SDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLS  718 (948)
T ss_pred             HhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHH
Confidence            8622 2499999999999999999999999999999999999 9999999999999654 56667788999999999999


Q ss_pred             HHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHH
Q psy3328         160 ELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTT  239 (337)
Q Consensus       160 ~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~  239 (337)
                      ++++.++|.||+|++.+.|.|+.|+.+||+|+|+..+|+.-+.|++|.+|..|..++|.++++++...+..|++++++++
T Consensus       719 rl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~llsv~k~~l~e~dn~e~  798 (948)
T KOG4436|consen  719 RLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALSLLSVHKQLLLEKDNFEE  798 (948)
T ss_pred             HHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHHHHHhhHHHHHhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcccccchhhhhHHHHHH
Q psy3328         240 LVECFKSMVRSPAVLNCHSFMSGLNYIAA  268 (337)
Q Consensus       240 i~~~l~~~~~~~~~~d~~~~i~~a~~~~~  268 (337)
                      |.++++++-.........++|..++++-.
T Consensus       799 i~d~~k~~~p~~~~~emeki~~qvf~mDi  827 (948)
T KOG4436|consen  799 IVDFLKTTLPKMEHTEMEKIIKQVFEMDI  827 (948)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhhhH
Confidence            99999988776655666677777766443

>KOG2595|consensus

Probab=99.96  E-value=3.2e-28  Score=212.26  Aligned_cols=232  Identities=18%  Similarity=0.268  Sum_probs=194.2

Q ss_pred             CCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcc---ccCChhhHHHHH
Q psy3328          16 HTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIF---FRNSLEHQQQLS   92 (337)
Q Consensus        16 iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~---f~~~~~~~~~L~   92 (337)
                      +.+++|+.+|+.|+|+.-....         ...+....+    .++.++|+..|++|++...+-   +..+..-++.|.
T Consensus        62 v~dslRk~vWp~L~~~~~n~~~---------~~~~~~~~q----~hkd~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~  128 (395)
T KOG2595|consen   62 VNDSLRKDVWPELLALNINHLD---------ATSTLTPVQ----KHKDYNQVILDVERSLGRFPPGIPKELRLQLQKQLT  128 (395)
T ss_pred             ccHHHHHHHHHHHhccccCCCc---------ccccCChhh----hCcccceEEEehhhhhccCCCCCCHHHHHHHHHHHH
Confidence            6889999999999997654433         222222222    346789999999999855331   111112377788


Q ss_pred             HHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhh
Q psy3328          93 RILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDH  172 (337)
Q Consensus        93 ~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~h  172 (337)
                      .++......+|+..|.||+|+||..|++++ +|.+|+.+++.+...++++|+.+...+..+.+..+..+++..+|+||+.
T Consensus       129 ~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~  207 (395)
T KOG2595|consen  129 ELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQF  207 (395)
T ss_pred             HHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence            888888888999999999999999999999 8999999999999888999999999999999999999999999999999


Q ss_pred             hhhcCCCcchhhhHhHHHhcccCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCC-CCHHHHHHHHHcCCCC
Q psy3328         173 ISKVGVPWPVIATKWFICMFADVL-PVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLEC-EDFTTLVECFKSMVRS  250 (337)
Q Consensus       173 l~~~~i~~~~~~~~W~~tlFs~~l-~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~-~~~~~i~~~l~~~~~~  250 (337)
                      |.+..+.+ +|+.+|++|||+|.+ ++..++|++|+|++..+-..+|++.+++...+++|+++ .|..-....++.+|++
T Consensus       208 l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~  286 (395)
T KOG2595|consen  208 LQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQD  286 (395)
T ss_pred             HHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccc
Confidence            99888886 799999999999998 89999999999999998899999999999999999987 3556667888888875


Q ss_pred             CcccccchhhhhHHH
Q psy3328         251 PAVLNCHSFMSGLNY  265 (337)
Q Consensus       251 ~~~~d~~~~i~~a~~  265 (337)
                         ...+.+|+.+..
T Consensus       287 ---lp~d~lik~s~~  298 (395)
T KOG2595|consen  287 ---LPYDTLIKESVL  298 (395)
T ss_pred             ---cCHHHHHHHHHH
Confidence               666777776644

>KOG1091|consensus

Probab=99.95  E-value=2.8e-27  Score=218.36  Aligned_cols=249  Identities=21%  Similarity=0.377  Sum_probs=187.6

Q ss_pred             CCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHH------------------------HhcC--------CCCcccH
Q psy3328          17 TSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFM------------------------LNNK--------ILDPDIG   64 (337)
Q Consensus        17 P~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~l------------------------l~~~--------~~~~~~~   64 (337)
                      -.+.|+..|+.+||+.+....+|.....+.+..|...                        +++.        ..+.+..
T Consensus        26 ~s~~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~  105 (625)
T KOG1091|consen   26 FSNLRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE  105 (625)
T ss_pred             hhhhhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence            4678999999999997766443322111112222211                        1110        3455788


Q ss_pred             HHHHhccCccCCCC-ccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCC-------------------
Q psy3328          65 ETIRTDLPRTFPEN-IFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKH-------------------  124 (337)
Q Consensus        65 ~~I~~Dv~Rt~~~~-~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~-------------------  124 (337)
                      +.|+.|+.||||++ .+|+. +..+..|++||..||..+|.++|.||||++.||++++...                   
T Consensus       106 ~~i~qDvsRtfPe~~~fFqs-~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f~  184 (625)
T KOG1091|consen  106 KTIDQDVSRTFPEHSLFFQS-PEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGFE  184 (625)
T ss_pred             HhhcchhhccCcchhhhhcC-chhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCcc
Confidence            99999999999999 55555 6679999999999999999999999999999999988532                   


Q ss_pred             -----------hhHHH--HHHHHHHHHh-----------hh------------hhccCCchhhhhhHHHHHHHHHhhChh
Q psy3328         125 -----------EENTY--WIFRSVINKY-----------FS------------DYYTKTLTGVVRDIDVLSELVKIKMPH  168 (337)
Q Consensus       125 -----------e~~af--~~~~~l~~~~-----------~~------------~~~~~~~~~~~~~~~~~~~ll~~~~P~  168 (337)
                                 +.+++  .++..+|..-           .+            +-+.+..+.+......+.+++.++|+.
T Consensus       185 E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~~  264 (625)
T KOG1091|consen  185 ERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDKS  264 (625)
T ss_pred             hhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccHH
Confidence                       12223  2444444320           00            111223344555567788999999999


Q ss_pred             hhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHH-HHhhcCCh--HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHH
Q psy3328         169 LYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWD-CLFVEGPK--ILFRVSLTLIKLHERALLECEDFTTLVECFK  245 (337)
Q Consensus       169 L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD-~~l~~g~~--~l~~~~lail~~~~~~il~~~~~~~i~~~l~  245 (337)
                      |+.||.+.||+|+.|..+|++.+|.++||+.+++.+|| +.++.++.  ++-++.++|+.+.|+.++.. +....++.+-
T Consensus       265 Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss-~~~tcL~~Lm  343 (625)
T KOG1091|consen  265 LHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSS-EYQTCLQYLM  343 (625)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHh
Confidence            99999999999999999999999999999999999999 77777776  67899999999999999986 4555777777


Q ss_pred             cCCCCCcccccchhhhhHHHHHHHH
Q psy3328         246 SMVRSPAVLNCHSFMSGLNYIAALI  270 (337)
Q Consensus       246 ~~~~~~~~~d~~~~i~~a~~~~~~~  270 (337)
                      ++|.   .+|++.||+.|..+..+.
T Consensus       344 ~yP~---~~Dv~~~iekAl~l~~~~  365 (625)
T KOG1091|consen  344 NYPE---IIDVDKFIEKALHLQKLF  365 (625)
T ss_pred             cCCC---cCcHHHHHHHHHHHHHhc
Confidence            7765   499999999999988644

>KOG2221|consensus

Probab=99.94  E-value=3e-27  Score=194.22  Aligned_cols=178  Identities=28%  Similarity=0.447  Sum_probs=168.3

Q ss_pred             CchhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcc
Q psy3328           1 MYKKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIF   80 (337)
Q Consensus         1 ~~~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~   80 (337)
                      |-|++++++..|+.|||+.+|+..|+.+.|.+.....        |+..|+.+... ..++...+.|++|++|.||.+..
T Consensus        89 m~kk~~~ir~rcrkgippslr~Raw~ylsGa~~~~~~--------np~~~~~~~~~-pG~p~t~e~i~kdl~rqfp~hem  159 (267)
T KOG2221|consen   89 MRKKQKKIRPRCRKGIPPSLRGRAWRYLSGAPSPPPK--------NPVVFDELGPA-PGDPKTAEGIHKDLHRQFPFHEM  159 (267)
T ss_pred             HHhccccccchhhcCCCcccchhHHHhhcCCCCCCCC--------CcchhhhccCC-CCCCcchhhhccccccCCCcccc
Confidence            6689999999999999999999999999999888776        89999999888 88889999999999999999999


Q ss_pred             ccCChh-hHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHH
Q psy3328          81 FRNSLE-HQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLS  159 (337)
Q Consensus        81 f~~~~~-~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  159 (337)
                      |-.... ++..|.|+|.+|..++|+.||||+-..|++.++..+ ++++|||||+.+...++++|+.++...++.+-.++.
T Consensus       160 f~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekylqgy~~sgleaiq~dg~il~  238 (267)
T KOG2221|consen  160 FGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYLQGYYSSGLEAIQNDGGILE  238 (267)
T ss_pred             cccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHcccccccchhhhhcccHHHH
Confidence            987443 389999999999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             HHHHhhChhhhhhhhhcCCCcchhhhHhH
Q psy3328         160 ELVKIKMPHLYDHISKVGVPWPVIATKWF  188 (337)
Q Consensus       160 ~ll~~~~P~L~~hl~~~~i~~~~~~~~W~  188 (337)
                      .|+++.+|..|.|+...+++|..|...||
T Consensus       239 ~Llkk~~~p~~rH~~~~kvdp~lym~ewF  267 (267)
T KOG2221|consen  239 GLLKKASPPPYRHLGGDKVDPLLYMTEWF  267 (267)
T ss_pred             HHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence            99999999999999999999999999997

>KOG1102|consensus

Probab=99.94  E-value=2.1e-26  Score=214.87  Aligned_cols=236  Identities=32%  Similarity=0.587  Sum_probs=202.1

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR   82 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~   82 (337)
                      ++..++......|||.++|+.+|..+++.......      ......|......  ......++| .|+.||++.+..|.
T Consensus       133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~------~~~~~l~~~~~~~--~~~~~~~~~-~d~~Rt~~~~~~f~  203 (397)
T KOG1102|consen  133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLF------DSLDELYRLQLDE--PEPHESEII-RDLSRTFPAHLLFR  203 (397)
T ss_pred             ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhh------hhHHHHHHHhhcc--CCCchhHHH-hhccCcCcchhhhh
Confidence            45678888889999999999999999987332222      0011223332322  334445666 99999999998888


Q ss_pred             CCh-hhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHHH
Q psy3328          83 NSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSEL  161 (337)
Q Consensus        83 ~~~-~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  161 (337)
                      ... .+++++.+|+.+|+.++|++||||||..++++++.++ +|++||++++.+|..+..+.+..+.++++..+..+..+
T Consensus       204 ~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~~~~~~~~~~~l~~~~~~~~~l  282 (397)
T KOG1102|consen  204 KRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYGLDLLSPGFSGLQRSFRQLQRL  282 (397)
T ss_pred             hhcCcccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccchhcccccCCchhhhHHHHHHH
Confidence            733 3489999999999999999999999999999999999 69999999999998765555588999999999999999


Q ss_pred             HHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHHH
Q psy3328         162 VKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLV  241 (337)
Q Consensus       162 l~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i~  241 (337)
                      ++...|.++.|+...++...+|+.+|++|+|+..+|++.+.++||.++.+|..+++.++++++....+.+++. +++.++
T Consensus       283 ~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l~~~~~~~~~~~-~~e~~~  361 (397)
T KOG1102|consen  283 LKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLALLKHKADDLLDL-DFESLL  361 (397)
T ss_pred             HHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHHhhhhhHHHhhc-cHHHHH
Confidence            9999999999999999999999999999999999999999999999999998899999999999999999986 699999


Q ss_pred             HHHHcCCC
Q psy3328         242 ECFKSMVR  249 (337)
Q Consensus       242 ~~l~~~~~  249 (337)
                      +++.+.+.
T Consensus       362 ~~l~~~~~  369 (397)
T KOG1102|consen  362 SYLRVDLP  369 (397)
T ss_pred             HHHhcccH
Confidence            99986654

>KOG2224|consensus

Probab=99.91  E-value=2.4e-24  Score=193.15  Aligned_cols=257  Identities=17%  Similarity=0.308  Sum_probs=187.6

Q ss_pred             HHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhc--ccCCChhHHHHHHhcCCC-Cc----------ccHHHHHhccCc
Q psy3328           7 KKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQT--RHYGTGGYYAFMLNNKIL-DP----------DIGETIRTDLPR   73 (337)
Q Consensus         7 klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~--~~~~~~~~y~~ll~~~~~-~~----------~~~~~I~~Dv~R   73 (337)
                      ..|.+.-+||-.++|+.||+.||..+.-....++.  ...+.+..|+++-.+ .. ..          ..+-.+++||-|
T Consensus       427 lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqk-rlysmspeeh~~fwknvq~tvdkdvvr  505 (781)
T KOG2224|consen  427 LRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQK-RLYSMSPEEHIAFWKNVQFTVDKDVVR  505 (781)
T ss_pred             hhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHhheEEEEecceee
Confidence            33445556899999999999999887655554332  244566777776555 22 11          123345799999


Q ss_pred             cCCCCccccCChh-hHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-------------
Q psy3328          74 TFPENIFFRNSLE-HQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-------------  139 (337)
Q Consensus        74 t~~~~~~f~~~~~-~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-------------  139 (337)
                      |..++++|..++. +.+++++||..|+.|||.+||.|||+++++|.+.-..+|+++||||+.+|...             
T Consensus       506 tdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevld  585 (781)
T KOG2224|consen  506 TDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLD  585 (781)
T ss_pred             ccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhc
Confidence            9999999987443 48999999999999999999998888888888877777777777777777631             


Q ss_pred             -----------hh-hhcc--CCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCc--chhhhHhHHHhcccCCChhhHHH
Q psy3328         140 -----------FS-DYYT--KTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPW--PVIATKWFICMFADVLPVETVLR  203 (337)
Q Consensus       140 -----------~~-~~~~--~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~--~~~~~~W~~tlFs~~l~~~~~~~  203 (337)
                                 ++ .+|.  +....+...+--++.+++...|..|+||.++|-+.  -+|+-+|++.+|.++||-..++|
T Consensus       586 esdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~air  665 (781)
T KOG2224|consen  586 ESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIR  665 (781)
T ss_pred             cccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHH
Confidence                       11 2222  22233444567788999999999999999887433  45799999999999999999999


Q ss_pred             HHHHHhhcCC--hHHHHHHHHHHHHcHHHHhCCC-CHHHHHHHHHcCCCCCcccccchhhhhHHHHH
Q psy3328         204 IWDCLFVEGP--KILFRVSLTLIKLHERALLECE-DFTTLVECFKSMVRSPAVLNCHSFMSGLNYIA  267 (337)
Q Consensus       204 iwD~~l~~g~--~~l~~~~lail~~~~~~il~~~-~~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~  267 (337)
                      +|..-++.-.  -|..|+|+||+-.+-+++++.+ -.++++--|.++--   .+|-+-++++|-.+-
T Consensus       666 iweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam---~mdgelilrkar~ll  729 (781)
T KOG2224|consen  666 IWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAM---HMDGELILRKARGLL  729 (781)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhh---hcCchhhHHHHHHHH
Confidence            9999988743  3899999999999999887652 34566555555432   256666666664443

>KOG2197|consensus

Probab=99.85  E-value=3.8e-21  Score=182.97  Aligned_cols=244  Identities=18%  Similarity=0.325  Sum_probs=191.5

Q ss_pred             HhhcCCCCchHHHHHHHHhcChHhhhhhhhc--ccCCChhHHHHHHhcC-----CC------CcccHHHHHhccCccCCC
Q psy3328          11 EAEIKHTSTFDFSIWMIISEADTLKKVTHQT--RHYGTGGYYAFMLNNK-----IL------DPDIGETIRTDLPRTFPE   77 (337)
Q Consensus        11 ~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~--~~~~~~~~y~~ll~~~-----~~------~~~~~~~I~~Dv~Rt~~~   77 (337)
                      ....|+-+.+|+.+|+.+++.........+.  .... ...|.......     ..      ..+....|.+|+.||.+.
T Consensus       173 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~  251 (488)
T KOG2197|consen  173 IFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRS  251 (488)
T ss_pred             ecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheeccccccccccchhhhhhhhhhhccccchh
Confidence            3344665599999999999987766653221  0111 22343333332     11      113347899999999998


Q ss_pred             CccccCChh-hHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHH
Q psy3328          78 NIFFRNSLE-HQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDID  156 (337)
Q Consensus        78 ~~~f~~~~~-~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (337)
                      +.++..... ....|..||.+|+.+++++||||||++.++|++.++.+|.+|||||+.+|.+..++|. .+..+++..+.
T Consensus       252 ~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~-~d~~~~~~Ql~  330 (488)
T KOG2197|consen  252 LEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFR-IDQSGMQTQLA  330 (488)
T ss_pred             hhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCc-cccccHHHHhh
Confidence            887775322 3889999999999999999999999999999999999999999999999999554554 56788888889


Q ss_pred             HHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCCh--HHHHHHHHHHHHcHHHHhCC
Q psy3328         157 VLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPK--ILFRVSLTLIKLHERALLEC  234 (337)
Q Consensus       157 ~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~--~l~~~~lail~~~~~~il~~  234 (337)
                      .+..+++..||.+++||+..+.....++.+|+..+|-+++..++++++|.++...-+.  +.++++.|++....+.|+..
T Consensus       331 ~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~~~  410 (488)
T KOG2197|consen  331 QLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLMEQ  410 (488)
T ss_pred             hhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999998554  89999999999988888875


Q ss_pred             -CCHHHHHHHHHcCCCCCcccccchh
Q psy3328         235 -EDFTTLVECFKSMVRSPAVLNCHSF  259 (337)
Q Consensus       235 -~~~~~i~~~l~~~~~~~~~~d~~~~  259 (337)
                       .+..+++..+.....   ..|....
T Consensus       411 ~~~~~e~l~~i~~~~~---~~d~~~~  433 (488)
T KOG2197|consen  411 GKSFNEVLKHVNLLSE---KADVLWV  433 (488)
T ss_pred             CccchhHHhhcccccc---cchhhhH
Confidence             344555555554433   2455544

>KOG4436|consensus

Probab=99.78  E-value=2.9e-18  Score=164.30  Aligned_cols=257  Identities=20%  Similarity=0.245  Sum_probs=213.8

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC--CCCcccHHHHHhccCccCCCCcc
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK--ILDPDIGETIRTDLPRTFPENIF   80 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~--~~~~~~~~~I~~Dv~Rt~~~~~~   80 (337)
                      ++..++++++++|+|...|..+|..++..+......       --..|.++...+  .........|..|++||.+.+.+
T Consensus       172 ~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~-------I~e~~sdl~~~s~~~Ek~~~~~~Irrdi~~~~~eh~~  244 (948)
T KOG4436|consen  172 KSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQAL-------IFEDYSDLAPCSSQQEKELHIGIIRRDIERTYPEHYF  244 (948)
T ss_pred             hchhhhHHHHhcCCchHHHHHHHHHhcccccchhhH-------HHHHHHHHhhhcchhhhhHHHHHHHHHhhccCcceee
Confidence            466799999999999999999999999877655220       125677777663  12222445899999999999999


Q ss_pred             ccCChhh--------HHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-hhhhccCCchhh
Q psy3328          81 FRNSLEH--------QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGV  151 (337)
Q Consensus        81 f~~~~~~--------~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-~~~~~~~~~~~~  151 (337)
                      |.+.+..        +..|.++..+|+...-+++||||-+.+++.+++.+ +++.+|..++.+|..+ ++..+.+....+
T Consensus       245 fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l  323 (948)
T KOG4436|consen  245 FKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPL  323 (948)
T ss_pred             eccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchh
Confidence            9875544        88999999999999999999999999999999998 8999999999999887 778898888888


Q ss_pred             hhhHHHHHHHHHhhCh-hhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHH
Q psy3328         152 VRDIDVLSELVKIKMP-HLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERA  230 (337)
Q Consensus       152 ~~~~~~~~~ll~~~~P-~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~  230 (337)
                      ...+..++...+...| .++.|+.+.+++.++|...||++.|...+|++...++.|.+.++|-...|+..+|++.+.++.
T Consensus       324 ~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d~  403 (948)
T KOG4436|consen  324 GLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRDI  403 (948)
T ss_pred             HHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhhh
Confidence            8888899999999999 999999999999999999999999999999999999999999999999999999999444444


Q ss_pred             HhCCCCHHHHHHHHHcCCCCCcccccchhhhhHHHHH
Q psy3328         231 LLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIA  267 (337)
Q Consensus       231 il~~~~~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~  267 (337)
                      =+...|+++....++........-+++.....+....
T Consensus       404 ~~~s~D~EG~~~~~qr~~s~~vggtp~k~~t~a~q~q  440 (948)
T KOG4436|consen  404 ELESLDMEGMLSYFQRNRSNTVGGTPDKLRTAAWQVQ  440 (948)
T ss_pred             hhhccCccccccchhhccccccCCCCchHHHHHHHHh
Confidence            3334599998888875555444556666655554433

>KOG2801|consensus

Probab=99.39  E-value=3.4e-12  Score=110.53  Aligned_cols=247  Identities=15%  Similarity=0.217  Sum_probs=175.4

Q ss_pred             HHHHHHhhcCC---CCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-CCC-c---ccHHHHHhccCccCCC
Q psy3328           6 KKKKEEAEIKH---TSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-ILD-P---DIGETIRTDLPRTFPE   77 (337)
Q Consensus         6 ~klk~~~~~Gi---P~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-~~~-~---~~~~~I~~Dv~Rt~~~   77 (337)
                      .++|+++|.|-   ...+|++|+..+..--+...-      --..+.|.+++.+. ..+ +   +..+-++.   -..|+
T Consensus        33 qelkqlarqgywaqshalrgkvyqrlirdipcrtv------tpdasvysdivgkivgkhsssclplpefvdn---tqvps  103 (559)
T KOG2801|consen   33 QELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTV------TPDASVYSDIVGKIVGKHSSSCLPLPEFVDN---TQVPS  103 (559)
T ss_pred             HHHHHHHhcchHHhhhhhhhHHHHHHHhcCCcccc------CCchhHHHHHHHHHhccCCcccccchhhccc---CcCch
Confidence            46788999984   678999999999764332221      11346787776552 011 1   11111111   01111


Q ss_pred             CccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh--hhhhccCCchhhhhhH
Q psy3328          78 NIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY--FSDYYTKTLTGVVRDI  155 (337)
Q Consensus        78 ~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~--~~~~~~~~~~~~~~~~  155 (337)
                      .  . -+..+....+.||.+.+...|++++|+.++.++++++++..+|.++|.-.++++...  -+....+++-.....+
T Consensus       104 y--c-lnargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafessc  180 (559)
T KOG2801|consen  104 Y--C-LNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSC  180 (559)
T ss_pred             h--h-hcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhh
Confidence            1  1 112456678999999999999999999999999999999989999998877776432  2345555666666778


Q ss_pred             HHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHH----
Q psy3328         156 DVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERAL----  231 (337)
Q Consensus       156 ~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~i----  231 (337)
                      ..|..++.+++...++.+-...-+.-.....|-.++| +++|+-...|++|.|+.+|.++++++++||++.+.+.-    
T Consensus       181 mtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalailkffhkvragqp  259 (559)
T KOG2801|consen  181 MTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQP  259 (559)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHhhcCCC
Confidence            8999999999999888875443333344567888888 46999999999999999999999999999999987742    


Q ss_pred             hCCCC-HHHHHHHHHcCCCCCcccccchhhhhHHHHHH
Q psy3328         232 LECED-FTTLVECFKSMVRSPAVLNCHSFMSGLNYIAA  268 (337)
Q Consensus       232 l~~~~-~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~~  268 (337)
                      ++.++ ..++-.+.+++-+.   ..+++++.+|+.++-
T Consensus       260 lesdsvkqdirtfvrdiakt---vspekllekafairl  294 (559)
T KOG2801|consen  260 LESDSVKQDIRTFVRDIAKT---VSPEKLLEKAFAIRL  294 (559)
T ss_pred             CccchHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHH
Confidence            33333 25666677776553   677888888888764

>KOG1648|consensus

Probab=97.78  E-value=6e-07  Score=83.26  Aligned_cols=229  Identities=17%  Similarity=0.240  Sum_probs=146.1

Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHhcChHhhhh--hhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCccccC
Q psy3328           6 KKKKEEAEIKHTSTFDFSIWMIISEADTLKKV--THQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN   83 (337)
Q Consensus         6 ~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~   83 (337)
                      +-+....++|.-...|+..|+...+-......  ..+...-.....|+.-+-.  ........|++|++|+-.+..+|.+
T Consensus       549 ~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~--~~~~~~~~~~kd~e~~~~~~~~fs~  626 (813)
T KOG1648|consen  549 RVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLIT--LFRANLHRIDKDVERCDRNLMFFSN  626 (813)
T ss_pred             HHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHH--HHhhheeeecchhhhCcchheeecC
Confidence            44566778889999999999999875443322  1111222234556554332  1122456788999999888888887


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHHHHHHH
Q psy3328          84 SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVK  163 (337)
Q Consensus        84 ~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~  163 (337)
                      . ++.++ +++...|...+-+-||.|||.++.+|++..+.+|.-+-.|+.-+|-. -++.| +..++....+-..+ +++
T Consensus       627 ~-~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~-q~~~~-~q~~~~~~~l~~~r-~~~  701 (813)
T KOG1648|consen  627 K-DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLR-QRGKF-PQRPGMSKCLLNLR-LIQ  701 (813)
T ss_pred             C-cchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHH-hcccC-CCCCCccccccccc-chh
Confidence            3 44444 78888888888889999999999999999987776666666665544 22333 23344433332222 566


Q ss_pred             hhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCC-----hHHHHHHHHHHHHcHHHHhCC-CCH
Q psy3328         164 IKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGP-----KILFRVSLTLIKLHERALLEC-EDF  237 (337)
Q Consensus       164 ~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~-----~~l~~~~lail~~~~~~il~~-~~~  237 (337)
                      -.+|-.. -++.    .....++||..-|-++++.+-...+|....+...     .+-++++++.- ...+.+... -+.
T Consensus       702 v~~~l~s-~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~-~~~~~~~t~~~~~  775 (813)
T KOG1648|consen  702 VVDPLIS-DIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLATT-NYHDVLITNNFDY  775 (813)
T ss_pred             hhcchhc-chhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHHH-hhHHHHhhcccch
Confidence            6666222 2211    1234589999999999988888888888877632     27777888774 334443332 345


Q ss_pred             HHHHHHHHcC
Q psy3328         238 TTLVECFKSM  247 (337)
Q Consensus       238 ~~i~~~l~~~  247 (337)
                      .+++.+++.+
T Consensus       776 t~~i~~~~~~  785 (813)
T KOG1648|consen  776 TDMIKFFNEM  785 (813)
T ss_pred             HHHHHHHHHH
Confidence            5666666544

>PF14961 BROMI: Broad-minded protein

Probab=97.62  E-value=0.0016  Score=67.43  Aligned_cols=156  Identities=13%  Similarity=0.194  Sum_probs=110.9

Q ss_pred             HHHHHHHHhhcCCCCcccchHHHHHHHHhhc-CChhHHHHHHHHHHHHh------hhhhc----c------CCc-hhhhh
Q psy3328          92 SRILKVFALDEKNIGYCQGLNYIAALILLVT-KHEENTYWIFRSVINKY------FSDYY----T------KTL-TGVVR  153 (337)
Q Consensus        92 ~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~-~~e~~af~~~~~l~~~~------~~~~~----~------~~~-~~~~~  153 (337)
                      .+++..|..+++. |=.+|..-.++.+++++ .+.+.+...+..+-...      .|...    .      .+. +-...
T Consensus      1087 l~~~~~~~~~~~~-~~y~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~~ 1165 (1296)
T PF14961_consen 1087 LHILFEFIHFCLQ-GSYPGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYFC 1165 (1296)
T ss_pred             hHHHhhhhcccCC-CCCCCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhhh
Confidence            3444444444443 33356665555555554 45555555544443321      22111    0      111 11223


Q ss_pred             hHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhC
Q psy3328         154 DIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLE  233 (337)
Q Consensus       154 ~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~  233 (337)
                      .++.++.+++...|.++.-+...|.+|...+.+|+.-+|=+.++.+.+....=.-+..|+.+-.|+++|+++..+++|++
T Consensus      1166 ~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~ilq 1245 (1296)
T PF14961_consen 1166 SCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEILQ 1245 (1296)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHHHH
Confidence            46889999999999999999999999999999999999999999999999998999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHcCC
Q psy3328         234 CEDFTTLVECFKSMV  248 (337)
Q Consensus       234 ~~~~~~i~~~l~~~~  248 (337)
                      ..-..++..+++.-+
T Consensus      1246 ~~q~q~L~~flke~~ 1260 (1296)
T PF14961_consen 1246 HTQTQDLQVFLKEEA 1260 (1296)
T ss_pred             hhhhchHHHHhhhcc
Confidence            765566666666443

>KOG2058|consensus

Probab=96.37  E-value=0.0056  Score=57.77  Aligned_cols=58  Identities=38%  Similarity=0.781  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHhhhccchhHHHHHHHHhhhhhhhhchhhhhhhhhHHHHHHHHHHHH
Q psy3328         261 SGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYY  318 (337)
Q Consensus       261 ~~a~~~~~~~~l~~k~~~~~y~~~~~~i~~~~~~~~~~~~~~l~~d~~~l~~l~~~~~  318 (337)
                      |..--+++...+..+.+++.||.+..++.+++|.||++++.|.+.|++||.+|+++++
T Consensus       244 QGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~l  301 (436)
T KOG2058|consen  244 QGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKL  301 (436)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHC
Confidence            3335577888888888999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
3qyb_A	301	X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab		4e-21
3qye_A	331	Crystal Structure Of Human Tbc1d1 Rabgap Domain Len		5e-21
3hzj_A	310	Crystal Structure Of The Rabgap Domain Of The Rabga		2e-18
2qq8_A	334	Crystal Structure Of The Putative Rabgap Domain Of		7e-14
2g77_A	410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-08
3dzx_A	346	Crystal Structure Of The Rabgap Domain Of Human Tbc		2e-07
1fkm_A	396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		2e-07
2qfz_A	345	Crystal Structure Of Human Tbc1 Domain Family Membe		8e-06

>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 54  LNNKILDPDIG------------ETIRTDLPRTFPENIFFRNSLEHQQ-QLSRILKVFAL 100
           L NK   PDI               I  DL RTFP + +F   L   Q  L  +LK ++L
Sbjct: 72  LPNKQQPPDISYKELLKQLTAQQHAILVDLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSL 131
Query: 101 DEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVI-NKYFSDYYTKTLTGVVRDIDVLS 159
            +K +GYCQG++++A  +LL+   EE  + + + ++ +  F   Y   +  +   +  LS
Sbjct: 132 LDKEVGYCQGISFVAG-VLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLS 190
Query: 160 ELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRV 219
            L+      LY+H+ +  +   + A  WF+ +FA    +  V R++D +F++G +++F+V
Sbjct: 191 RLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVFDIIFLQGTEVIFKV 250
Query: 220 SLTLIKLHERALLECEDFTTLVECFKS 246
           +L+L+   E  ++ECE F  +VE  K+
Sbjct: 251 ALSLLSSQETLIMECESFENIVEFLKN 277

>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Query: 66  TIRTDLPRTFPENIFFRNSLEHQQ-QLSRILKVFALDEKNIGYCQGLNYIAALILLVTKH 124
            I  DL RTFP + +F   L   Q  L  ILK ++L ++ +GYCQGL+++A ++LL    
Sbjct: 106 AILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSE 165
Query: 125 EENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIA 184
           EE    +   + +      Y   +  +   +  LS L+      LY+H+ +  +   + A
Sbjct: 166 EEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYA 225
Query: 185 TKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECF 244
             WF+ MFA   P+  V R++D +F++G +++F+V+L+L+  H+  +L+ E+  T+V+  
Sbjct: 226 APWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFI 285
Query: 245 KS 246
           KS
Sbjct: 286 KS 287

>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 4/181 (2%)
Query: 67  IRTDLPRTFPENIFFRNSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHE 125
           I  D+ RTFP + +F+++  + Q+ L +I K +++ +++IGYCQG +++AA +LL+   E
Sbjct: 73  ITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAA-VLLLHXPE 131
Query: 126 ENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIA 184
           E  + +   +   Y   D Y      +      L  L + ++P L+ H S + +     A
Sbjct: 132 EQAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYA 191
Query: 185 TKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECF 244
           ++WF+ +F    P+  V  I D L  EG  I+F V+L L+K  +  LL+  DF   ++ F
Sbjct: 192 SQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFF 250
Query: 245 K 245
           +
Sbjct: 251 R 251

>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 34  LKKVTHQTRHYGTGGYYAFMLNNKILDPDIG----------ETIRTDLPRTFPENIFFRN 83
           L +   + R   TGG       +++ + D G          E I+ D+ RTFP    F+ 
Sbjct: 77  LARAKERWRSLSTGG-------SEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ 129
Query: 84  SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 143
              +   L  IL  +     ++GY QG+++IAA +L++     + +  F +++NK     
Sbjct: 130 GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAA-VLILNLDTADAFIAFSNLLNKPCQMA 188
Query: 144 YTKTLTGVVRDIDVLSELV-KIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVL 202
           + +   G++       E+  +  +P L+ H  K  +   +    W   +++  LP++   
Sbjct: 189 FFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLAC 248
Query: 203 RIWDCLFVEGPKILFRVSLTLIKLHERAL 231
           RIWD    +G + LFR +L ++KL E  L
Sbjct: 249 RIWDVFCRDGEEFLFRTALGILKLFEDIL 277

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 30/173 (17%)
Query: 67  IRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALIL------- 119
           I  D+PRT P +I        Q  L RIL ++A+     GY QG+N +            
Sbjct: 110 IEIDIPRTNP-HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEY 168
Query: 120 ---------------------LVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVL 158
                                 +T  E +T+W    ++ +  +D Y     G++R +  L
Sbjct: 169 LPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQ-ITDNYIHGQPGILRQVKNL 227
Query: 159 SELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVE 211
           S+LVK     LY+H     V +   A +W  C+      + TV+R+WD    E
Sbjct: 228 SQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSE 280

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 30/213 (14%)
Query: 62  DIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLV 121
           D    I  D+PRT P    F+  L  Q+   RIL ++A+     GY QG+N +     +V
Sbjct: 104 DTYRQIHIDIPRTNPLIPLFQQPLV-QEIFERILFIWAIRHPASGYVQGINDLVTPFFVV 162
Query: 122 -----------------------TKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVL 158
                                     E +++W    +++    D YT    G+ + +  L
Sbjct: 163 FLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDG-IQDNYTFAQPGIQKKVKAL 221
Query: 159 SELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKI--- 215
            ELV      +++H  +  V +   A +W   +    LP+   +R+WD    E       
Sbjct: 222 EELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHF 281
Query: 216 -LFRVSLTLIKLHERALLECEDFTTLVECFKSM 247
            L+  +  LIK   + +L+ EDF  L+   +++
Sbjct: 282 HLYVCAAFLIKWR-KEILDEEDFQGLLMLLQNL 313

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 67  IRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALIL------- 119
           I  D+PRT P +I        Q  L RIL ++A+     GY QG+N +            
Sbjct: 90  IEIDIPRTNP-HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEY 148
Query: 120 ---------------------LVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVL 158
                                 +T  E +T+W    ++ +  +D Y     G++R +  L
Sbjct: 149 LPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQ-ITDNYIHGQPGILRQVKNL 207
Query: 159 SELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVE 211
           S+LVK     LY+H     V +   A +W  C+        TV+R WD    E
Sbjct: 208 SQLVKRIDADLYNHFQNEHVEFIQFAFRWXNCLLXREFQXGTVIRXWDTYLSE 260

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 37/226 (16%)
Query: 49  YYAFMLN-----NKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEK 103
           Y+AF+ +     N  +  D    I  D+PR  PE +  +  +   +   RIL ++A+   
Sbjct: 85  YFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQPKV--TEIFERILFIWAIRHP 142
Query: 104 NIGYCQGLN-------------YIAALIL-----------LVTKHEENTYWIFRSVINKY 139
             GY QG+N             YI A  +           ++   E +TYW    +++  
Sbjct: 143 ASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG- 201
Query: 140 FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVE 199
             D YT    G+   + +L ELV      ++ H+ +  V +   A +W   +    +P+ 
Sbjct: 202 IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLR 261
Query: 200 TVLRIWDCLFVEGPKI----LFRVSLTLIKLHERALLECEDFTTLV 241
             +R+WD    E        L+  +  L++   + +LE +DF  L+
Sbjct: 262 CTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWR-KEILEEKDFQELL 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	1e-77
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	5e-08
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	6e-72
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	3e-08
2qq8_A	334	TBC1 domain family member 14; structural genomics	1e-68
2qq8_A	334	TBC1 domain family member 14; structural genomics	3e-07
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	2e-49
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	8e-47
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	3e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score =  240 bits (613), Expect = 1e-77
 Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           IW  ++E   LK     ++       Y  +L            I  DL RTFP + +F  
Sbjct: 68  IWKFLAEQFHLKH-QFPSKQQPKDVPYKELLKQ---LTSQQHAILIDLGRTFPTHPYFSA 123

Query: 84  SLEH-QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FS 141
            L   Q  L  ILK ++L ++ +GYCQGL+++A ++LL    EE  + + + ++      
Sbjct: 124 QLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-EEEAFKMLKFLMFDMGLR 182

Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
             Y   +  +   +  LS L+      LY+H+ +  +   + A  WF+ MFA   P+  V
Sbjct: 183 KQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFV 242

Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
            R++D +F++G +++F+V+L+L+  H+  +L+ E+  T+V+  KS + +  ++     +
Sbjct: 243 ARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTI 301

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDY 317
           GL+++A ++LL    EE  + + + ++        Y   +  +   +  LS L++DY
Sbjct: 151 GLSFVAGILLLHMS-EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY 206

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score =  224 bits (573), Expect = 6e-72
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 18/242 (7%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
           +W +++     + +            Y  ++     D      I  D+ RTFP + +F++
Sbjct: 42  VWQLLAGCHDNQAML---------DRYRILITK---DSAQESVITRDIHRTFPAHDYFKD 89

Query: 84  SLEH-QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FS 141
           +    Q+ L +I K +++ +++IGYCQG +++AA++LL    EE  + +   ++  Y   
Sbjct: 90  TGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP-EEQAFCVLVKIMYDYGLR 148

Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
           D Y      +      L  L++ ++P L+ H S + +   + A++WF+ +F    P+  V
Sbjct: 149 DLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMV 208

Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRS--PAVLNCHSF 259
             I D L  EG  I+F V+L L+K  +  LL+  DF   ++ F+  +     A  N    
Sbjct: 209 FHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRVQLPKRYRAEENARRL 267

Query: 260 MS 261
           M 
Sbjct: 268 ME 269

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDY 317
           G +++AA++LL    EE  + +   ++  Y   D Y      +      L  L+ + 
Sbjct: 117 GQSFLAAVLLLHMP-EEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQ 172

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score =  216 bits (553), Expect = 1e-68
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 16/238 (6%)

Query: 24  IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIG-------------ETIRTD 70
           +W +    +                     L+    + +               E I+ D
Sbjct: 57  VWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLD 116

Query: 71  LPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYW 130
           + RTFP    F+    +   L  IL  +     ++GY QG+++IAA+++L      + + 
Sbjct: 117 ISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD-TADAFI 175

Query: 131 IFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFI 189
            F +++NK     ++      ++          +  +P L+ H  K  +   +    W  
Sbjct: 176 AFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIF 235

Query: 190 CMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSM 247
            +++  LP++   RIWD    +G + LFR +L ++KL E  L +  DF  + +    +
Sbjct: 236 TLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKM-DFIHMAQFLTRL 292

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDY 317
           G+++IAA+++L      + +  F +++NK     ++      ++           + 
Sbjct: 156 GMSFIAAVLILNLD-TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEEN 211

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score =  167 bits (424), Expect = 2e-49
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 30/234 (12%)

Query: 41  TRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFAL 100
            + Y     + +   N  +  D    I  D+PR  PE +  +   +  +   RIL ++A+
Sbjct: 82  QKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQP--KVTEIFERILFIWAI 139

Query: 101 DEKNIGYCQGLNYIAALILLV------------------------TKHEENTYWIFRSVI 136
                GY QG+N +     +V                           E +TYW    ++
Sbjct: 140 RHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLL 199

Query: 137 NKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVL 196
           +    D YT    G+   + +L ELV      ++ H+ +  V +   A +W   +    +
Sbjct: 200 DGIQ-DNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREV 258

Query: 197 PVETVLRIWDCLFVEG---PKILFRVSLTLIKLHERALLECEDFTTLVECFKSM 247
           P+   +R+WD    E          V    +    + +LE +DF  L+   +++
Sbjct: 259 PLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score =  162 bits (410), Expect = 8e-47
 Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 31/247 (12%)

Query: 52  FMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGL 111
              +    D      I  D+PRT P    ++     Q  L RIL ++A+     GY QG+
Sbjct: 75  TFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGI 133

Query: 112 NYIAALILLV----------------------------TKHEENTYWIFRSVINKYFSDY 143
           N +                                   T  E +T+W    ++ +   D 
Sbjct: 134 NDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT-DN 192

Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
           Y     G++R +  LS+LVK     LY+H     V +   A +W  C+      + TV+R
Sbjct: 193 YIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIR 252

Query: 204 IWDCLFVEGPK-ILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSG 262
           +WD    E  + +    S++   +            + V   K        L+  +  + 
Sbjct: 253 MWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNA 312

Query: 263 LNYIAAL 269
           +     +
Sbjct: 313 VEDSGKM 319

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score =  137 bits (345), Expect = 3e-38
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 9/183 (4%)

Query: 65  ETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKH 124
           + +R     T    ++ R       +L R               +    IA  +  + + 
Sbjct: 94  KVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLE-----PDDEVFLAIAKAMEEMVED 148

Query: 125 EENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIA 184
             + YWI R  +N+  + Y       + +      + + ++   L  H+        +  
Sbjct: 149 SVDCYWITRRFVNQLNTKYRD----SLPQLPKAFEQYLNLEDGRLLTHLRMCSAAPKLPY 204

Query: 185 TKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECF 244
             WF   FA  LP  ++ R+WD +     KIL  V++ ++   +  ++       + +  
Sbjct: 205 DLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFL 264

Query: 245 KSM 247
           +++
Sbjct: 265 ENI 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 53/338 (15%), Positives = 100/338 (29%), Gaps = 84/338 (24%)

Query: 20  FDFSI-WMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPEN 78
            DF I W+ +   ++ + V               ML   +   D   T R+D        
Sbjct: 180 MDFKIFWLNLKNCNSPETVLE-------------MLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 79  I-----FFRNSLEHQQ-----------QLSRILKVFALDEKNIGYCQGL------NYIAA 116
           I       R  L+ +            Q ++    F     N+  C+ L           
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS-CKILLTTRFKQVTDF 280

Query: 117 LILLVTKH-----------EENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIK 165
           L    T H            +    +    ++    D   + LT   R + +++E ++  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-D 339

Query: 166 MPHLYDHISKVGVPWPVIATKWFICMFADVL-PVETVLRIWDC-LFVEGPKILFRVSLTL 223
               +D+   V     +      I    +VL P E         +F     I   + L+L
Sbjct: 340 GLATWDNWKHVNC-DKLTTI---IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSL 394

Query: 224 I--KLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTY 281
           I   + +    +      + +  K      +++           I ++ L +    EN Y
Sbjct: 395 IWFDVIKS---DVMVV--VNKLHKY-----SLVEKQPK-ESTISIPSIYLELKVKLENEY 443

Query: 282 WIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDYY 318
            + RS+++ Y     +         D D L     D Y
Sbjct: 444 ALHRSIVDHYNIPKTF---------DSDDLIPPYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
2qq8_A	334	TBC1 domain family member 14; structural genomics	100.0
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	100.0

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=100.00  E-value=1.3e-51  Score=379.58  Aligned_cols=261  Identities=25%  Similarity=0.447  Sum_probs=234.9

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR   82 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~   82 (337)
                      .+.++++.++++|||+.+|+.||+.++|+...... +..+.....+.|.++++..   .+..++|++|+.||+|++++|.
T Consensus        47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~-~~~~~~~~~~~Y~~l~~~~---~~~~~~I~~Dv~Rt~~~~~~f~  122 (331)
T 3qye_A           47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQ-FPSKQQPKDVPYKELLKQL---TSQQHAILIDLGRTFPTHPYFS  122 (331)
T ss_dssp             CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCC-CCSSSCCCCCCHHHHTTSC---CTTHHHHHHHHTTSSTTSTTTC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhc-chhhhhhchHHHHHHHHhc---CCchhHHHHhhcccCCCchhhc
Confidence            35689999999999999999999999999775432 2223344678899998872   3457999999999999999998


Q ss_pred             CCh-hhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-hhhhccCCchhhhhhHHHHHH
Q psy3328          83 NSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSE  160 (337)
Q Consensus        83 ~~~-~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (337)
                      ... .++..|++||.+|+.+||++|||||||+|+|+|+.++ +|++|||||.++|..+ ++++|.++.++++..+..++.
T Consensus       123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (331)
T 3qye_A          123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR  201 (331)
T ss_dssp             STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence            742 4689999999999999999999999999999999998 8999999999999886 789999999999999999999


Q ss_pred             HHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHH
Q psy3328         161 LVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTL  240 (337)
Q Consensus       161 ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i  240 (337)
                      +++.++|+|++||.+.|+.+..|+.+||+|+|++.+|++.++|+||.++++|+.+++++|+|++..++++|++++|++++
T Consensus       202 ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~i  281 (331)
T 3qye_A          202 LLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETI  281 (331)
T ss_dssp             HHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHcCCCCCcccccchhhhhHHHHHH
Q psy3328         241 VECFKSMVRSPAVLNCHSFMSGLNYIAA  268 (337)
Q Consensus       241 ~~~l~~~~~~~~~~d~~~~i~~a~~~~~  268 (337)
                      +.+|++.++.....|++.++++|+.+..
T Consensus       282 l~~l~~~~p~~~~~di~~li~~A~~l~~  309 (331)
T 3qye_A          282 VDFIKSTLPNLGLVQMEKTINQVFEMDI  309 (331)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence            9999986555455788999999988764

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-51  Score=375.07  Aligned_cols=251  Identities=25%  Similarity=0.503  Sum_probs=227.7

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR   82 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~   82 (337)
                      ++.+++++++++|||+.+|+.||+.++|+......         .+.|..++++   ..+..++|++|+.||+|++++|.
T Consensus        21 ~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~---------~~~Y~~l~~~---~~~~~~~I~~Dv~Rt~p~~~~f~   88 (310)
T 3hzj_A           21 ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM---------LDRYRILITK---DSAQESVITRDIHRTFPAHDYFK   88 (310)
T ss_dssp             SCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH---------HHHHHHHTTS---CCTTHHHHHHHHTTSSTTSTTTS
T ss_pred             cCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH---------HHHHHHHHhc---cCCcHHHHHHHHHhhCCCchhhc
Confidence            46789999999999999999999999999764433         5678888776   34568999999999999999998


Q ss_pred             CCh-hhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-hhhhccCCchhhhhhHHHHHH
Q psy3328          83 NSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSE  160 (337)
Q Consensus        83 ~~~-~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (337)
                      ... .+++.|+|||.+|+.++|++|||||||+|||+|+.++ +|++|||||+++|.++ ++++|.++.+++...+..++.
T Consensus        89 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (310)
T 3hzj_A           89 DTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLER  167 (310)
T ss_dssp             STTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence            743 4699999999999999999999999999999999999 8999999999999876 779999999999999999999


Q ss_pred             HHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHH
Q psy3328         161 LVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTL  240 (337)
Q Consensus       161 ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i  240 (337)
                      +++.++|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|.++++++|+|++..++++|+++ |++++
T Consensus       168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~  246 (310)
T 3hzj_A          168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGA  246 (310)
T ss_dssp             HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHH
T ss_pred             HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997 99999


Q ss_pred             HHHHH-cCCCCC-cccccchhhhhHHHHH
Q psy3328         241 VECFK-SMVRSP-AVLNCHSFMSGLNYIA  267 (337)
Q Consensus       241 ~~~l~-~~~~~~-~~~d~~~~i~~a~~~~  267 (337)
                      +.+|+ ++|+.. ...|++.+++.|+.+.
T Consensus       247 l~~l~~~lp~~~~~~~d~~~ll~~A~~l~  275 (310)
T 3hzj_A          247 LKFFRVQLPKRYRAEENARRLMEQACNIK  275 (310)
T ss_dssp             HHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCcccccccccHHHHHHHHHhcC
Confidence            99997 555432 3468889988888774

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-51  Score=374.11  Aligned_cols=250  Identities=20%  Similarity=0.392  Sum_probs=221.9

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-----------------------CC
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-----------------------IL   59 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-----------------------~~   59 (337)
                      ++.+++|+++++|||+.+|+.||+.++|+....          +++.|..+++..                       ..
T Consensus        36 ~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~----------~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~  105 (334)
T 2qq8_A           36 WCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNI----------THELFDICLARAKERWRSLSTGGSEVENEDAGFSAAD  105 (334)
T ss_dssp             CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCC----------CHHHHHHHHHHHHHHC---------------------
T ss_pred             cChHHHHHHHHCCCCHHHHHHHHHHHhCCcccc----------CHHHHHHHHHHHHHHHHHhccccccCccccccccccc
Confidence            456899999999999999999999999985211          234454443220                       01


Q ss_pred             CcccHHHHHhccCccCCCCccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy3328          60 DPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY  139 (337)
Q Consensus        60 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~  139 (337)
                      ..+..++|++||.||+|++++|.....+++.|+|||.+|+.+||++||||||++|||+|+.++ +|++|||||+++|++.
T Consensus       106 ~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~  184 (334)
T 2qq8_A          106 REASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKP  184 (334)
T ss_dssp             -CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSH
T ss_pred             chhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence            245679999999999999999987545699999999999999999999999999999999998 8999999999999986


Q ss_pred             hh-hhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHH
Q psy3328         140 FS-DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFR  218 (337)
Q Consensus       140 ~~-~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~  218 (337)
                      .+ +||..+.+++...+..++.+++.++|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|..++++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~  264 (334)
T 2qq8_A          185 CQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFR  264 (334)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHH
Confidence            54 88988899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcHHHHhCCCCHHHHHHHHHcCCCCCcccccchhhhhHHHHH
Q psy3328         219 VSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIA  267 (337)
Q Consensus       219 ~~lail~~~~~~il~~~~~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~  267 (337)
                      +|+|++...+++|+++ |+++++.+|+++|..   +|++.+++.|..+.
T Consensus       265 valaiL~~~~~~Ll~~-d~~~il~~L~~lp~~---~d~~~l~~~a~~l~  309 (334)
T 2qq8_A          265 TALGILKLFEDILTKM-DFIHMAQFLTRLPED---LPAEELFASIATIQ  309 (334)
T ss_dssp             HHHHHHHHTHHHHHTC-CHHHHHHHHHSCCTT---CCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHhCCCc---CCHHHHHHHHHHcc
Confidence            9999999999999997 899999999999875   78899988877765

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=100.00  E-value=7.2e-51  Score=376.50  Aligned_cols=270  Identities=17%  Similarity=0.277  Sum_probs=233.4

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC------CCCcccHHHHHhccCccCC
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK------ILDPDIGETIRTDLPRTFP   76 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~------~~~~~~~~~I~~Dv~Rt~~   76 (337)
                      .+.+++|+++++|||+.+|+.||+.++|+.+...+.+.....+.++.|.++++..      ..+.+..++|++||.||+|
T Consensus        38 ~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p  117 (345)
T 2qfz_A           38 TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSP  117 (345)
T ss_dssp             CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSC
T ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCC
Confidence            3568999999999999999999999999865443333333333578899998763      1244578999999999999


Q ss_pred             CCccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcC------------------------ChhHHHHHH
Q psy3328          77 ENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTK------------------------HEENTYWIF  132 (337)
Q Consensus        77 ~~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~------------------------~e~~af~~~  132 (337)
                      + ++|+. +.++..|+|||.+|+.+||++|||||||+|+++|+.++.                        +|++|||||
T Consensus       118 ~-~~F~~-~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f  195 (345)
T 2qfz_A          118 E-ALILQ-PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCM  195 (345)
T ss_dssp             H-HHHTS-HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             c-cccCC-chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHH
Confidence            9 98987 567899999999999999999999999999999998763                        289999999


Q ss_pred             HHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcC
Q psy3328         133 RSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEG  212 (337)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g  212 (337)
                      +++|++ ++++|..+.+++...+..++.+++.++|+|++||.+.|+++..|+.+||+|+|++++|++.++|+||.+|++|
T Consensus       196 ~~lm~~-~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g  274 (345)
T 2qfz_A          196 SKLLDG-IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP  274 (345)
T ss_dssp             HHHHHT-SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred             HHHHHc-cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence            999998 4788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ch---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHcCCCCCc-ccccchhhhhHHHHHHHHHHhhh
Q psy3328         213 PK---ILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPA-VLNCHSFMSGLNYIAALILLVTK  275 (337)
Q Consensus       213 ~~---~l~~~~lail~~~~~~il~~~~~~~i~~~l~~~~~~~~-~~d~~~~i~~a~~~~~~~~l~~k  275 (337)
                      +.   +++++|+|++...+++|+++.|+++++.+|+++|.... ..|++.+++.|+.+......+.+
T Consensus       275 ~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~  341 (345)
T 2qfz_A          275 DGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFADAPN  341 (345)
T ss_dssp             TTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC-----
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHHHhhHh
Confidence            86   78999999999999999977899999999999987542 35899999999999876543333

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=100.00  E-value=2.1e-50  Score=378.47  Aligned_cols=267  Identities=20%  Similarity=0.307  Sum_probs=234.9

Q ss_pred             hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-----CCCcccHHHHHhccCccCCC
Q psy3328           3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-----ILDPDIGETIRTDLPRTFPE   77 (337)
Q Consensus         3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-----~~~~~~~~~I~~Dv~Rt~~~   77 (337)
                      .+.+++|+++++|||+.+|+.||+.++|+.+.....++....+.++.|.+++++.     ..+.+..++|++||.||+|+
T Consensus        21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~  100 (396)
T 1fkm_A           21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPH  100 (396)
T ss_dssp             CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTT
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCC
Confidence            3568999999999999999999999999876554434333344578899998752     23456789999999999999


Q ss_pred             CccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcC---------------------C-------hhHHH
Q psy3328          78 NIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTK---------------------H-------EENTY  129 (337)
Q Consensus        78 ~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~---------------------~-------e~~af  129 (337)
                      +++|.. ..+++.|+|||.+|+.+||++||||||++|+++|+.++.                     +       |++||
T Consensus       101 ~~~F~~-~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF  179 (396)
T 1fkm_A          101 IPLYQF-KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  179 (396)
T ss_dssp             SGGGGS-HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             cccccC-chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHH
Confidence            999987 567999999999999999999999999999999998641                     2       89999


Q ss_pred             HHHHHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHh
Q psy3328         130 WIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLF  209 (337)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l  209 (337)
                      |||+++|++ ++++|.++.+++...+..++.+++.++|+|++||.+.|+.+..|+.+||+|+|++++|++.++||||.+|
T Consensus       180 ~~f~~lm~~-~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l  258 (396)
T 1fkm_A          180 WCLTKLLEQ-ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL  258 (396)
T ss_dssp             HHHHHHHGG-GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence            999999998 5888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC---------------------------------------------------C------------hHHHHHHHHHHHH
Q psy3328         210 VEG---------------------------------------------------P------------KILFRVSLTLIKL  226 (337)
Q Consensus       210 ~~g---------------------------------------------------~------------~~l~~~~lail~~  226 (337)
                      ++|                                                   +            .+++++|+|+|..
T Consensus       259 ~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~  338 (396)
T 1fkm_A          259 SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIK  338 (396)
T ss_dssp             HHHC------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred             HCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHH
Confidence            998                                                   2            5899999999999


Q ss_pred             cHHHHhCCCCHHHHHHHHHcCCCCCc-ccccchhhhhHHHHHHHHHH
Q psy3328         227 HERALLECEDFTTLVECFKSMVRSPA-VLNCHSFMSGLNYIAALILL  272 (337)
Q Consensus       227 ~~~~il~~~~~~~i~~~l~~~~~~~~-~~d~~~~i~~a~~~~~~~~l  272 (337)
                      .|++|+++ |+++++.+|+++|.... ..|++.++++|+.+......
T Consensus       339 ~r~~Ll~~-df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~  384 (396)
T 1fkm_A          339 WSDQLMEM-DFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKD  384 (396)
T ss_dssp             THHHHTTC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhc-CHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhc
Confidence            99999985 99999999999987432 47899999999988876533

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=100.00  E-value=3.1e-47  Score=344.04  Aligned_cols=247  Identities=16%  Similarity=0.230  Sum_probs=215.7

Q ss_pred             hHHHHHHhhcC---CCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCccc
Q psy3328           5 KKKKKEEAEIK---HTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFF   81 (337)
Q Consensus         5 ~~klk~~~~~G---iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f   81 (337)
                      .+++|.++..|   +|+++|+.||+.++|+......          +.|.....   .+++..++|++|+.||++.++.|
T Consensus        34 l~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~----------~~~~~~~~---~~~~~~~qI~~Dv~RT~~~~~~~  100 (292)
T 4hl4_A           34 VAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPP----------PISGKNLR---QMSKDYQQVLLDVRRSLRRFPPG  100 (292)
T ss_dssp             HHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCC----------SCCCTTHH---HHCTTHHHHHHHHHTTGGGSCTT
T ss_pred             HHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCC----------Cchhhhhc---ccchhHHHHHHhhhhhhhhccCC
Confidence            46788887753   8999999999999999876433          11211111   23468999999999999998877


Q ss_pred             cCC---hhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHH
Q psy3328          82 RNS---LEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVL  158 (337)
Q Consensus        82 ~~~---~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  158 (337)
                      ...   ...++.|.+||.+|+.+||++|||||||+||++|+.++ +|++|||||+++++..+++|+.++.+++...+..+
T Consensus       101 ~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l  179 (292)
T 4hl4_A          101 MPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYL  179 (292)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            542   23478899999999999999999999999999999988 89999999999999889999999999999999999


Q ss_pred             HHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCC-hhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCC-CC
Q psy3328         159 SELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLP-VETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLEC-ED  236 (337)
Q Consensus       159 ~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~-~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~-~~  236 (337)
                      +.+++.++|+|++||.+.++. ..|+.+||+|+|++++| ++.++|+||.++++|+.+++++++|++...+++|+++ .+
T Consensus       180 ~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d  258 (292)
T 4hl4_A          180 MPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCD  258 (292)
T ss_dssp             HHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCS
T ss_pred             HHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999995 69999999999999995 9999999999999999999999999999999999997 47


Q ss_pred             HHHHHHHHHcCCCCCcccccchhhhhHHHHHHH
Q psy3328         237 FTTLVECFKSMVRSPAVLNCHSFMSGLNYIAAL  269 (337)
Q Consensus       237 ~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~~~  269 (337)
                      ++.+..+++++|..   .|++.+++.|..+...
T Consensus       259 ~~~l~~~l~~lp~~---~d~~~li~~A~~l~~~  288 (292)
T 4hl4_A          259 MASVHHLLSQIPQD---LPYETLISRAGDLFVQ  288 (292)
T ss_dssp             TTHHHHHHHSCCSS---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC---CCHHHHHHHHHHHHHH
Confidence            88899999999854   7999999999888754

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=288.76  Aligned_cols=237  Identities=14%  Similarity=0.220  Sum_probs=197.4

Q ss_pred             hhHHHHHHhhcC-CCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328           4 KKKKKKEEAEIK-HTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR   82 (337)
Q Consensus         4 ~~~klk~~~~~G-iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~   82 (337)
                      +.+|+|+.+++| ||+.+|+.||+.|+|+.+...+.++....+++..|.++++.    .+..    +++.+..|-.    
T Consensus        39 d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~----~~~~----r~I~~~tP~~----  106 (294)
T 3qwl_A           39 DTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA----LKVV----RFVSDATPQA----  106 (294)
T ss_dssp             CHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH----HHHT----TSCCTTSCHH----
T ss_pred             CHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh----hhhh----hhhhccCchH----
Confidence            578999999999 99999999999999998888777777777788999999887    1222    2222222211    


Q ss_pred             CChhhHHHHHHHHHHHHhh----------cCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhh
Q psy3328          83 NSLEHQQQLSRILKVFALD----------EKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVV  152 (337)
Q Consensus        83 ~~~~~~~~L~~iL~~~~~~----------~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~  152 (337)
                               ...+..|...          +++ .++|||..|+++++.++.+|++|||||+++|++ ++++|.++.+|++
T Consensus       107 ---------~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-l~~~f~~~~~gl~  175 (294)
T 3qwl_A          107 ---------EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-LNTKYRDSLPQLP  175 (294)
T ss_dssp             ---------HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-HHTTTTTTGGGHH
T ss_pred             ---------HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhhCCChhHHH
Confidence                     1122222211          222 246899999999999888999999999999999 6789999999986


Q ss_pred             hhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHh
Q psy3328         153 RDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALL  232 (337)
Q Consensus       153 ~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il  232 (337)
                      .   .++.+++.++|+|++||++.|+.+..++.+||+++|++++|++.++|+||.++++|..+++++|+|++..++++|+
T Consensus       176 ~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll  252 (294)
T 3qwl_A          176 K---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVM  252 (294)
T ss_dssp             H---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Confidence            5   4589999999999999999999988777899999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHcCCCCCcccccchhhhhHHHHHHHH
Q psy3328         233 ECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALI  270 (337)
Q Consensus       233 ~~~~~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~~~~  270 (337)
                      ++++.++++++|+++|.    .|++.++++|+.+....
T Consensus       253 ~~~~~~~il~~Lq~lp~----~di~~ll~~A~~l~~~~  286 (294)
T 3qwl_A          253 ALNSAEKITKFLENIPQ----DSSDAIVSKAIDLWHKH  286 (294)
T ss_dssp             HCCSHHHHHHHHTTCCS----TTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCc----ccHHHHHHHHHHHHHHc
Confidence            98777999999999986    57899999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	4e-18
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	1e-14

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.7 bits (193), Expect = 4e-18
 Identities = 23/107 (21%), Positives = 39/107 (36%)

Query: 150 GVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLF 209
           G++R +  LS+LVK     LY+H     V +   A +W  C+      + TV+R+WD   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 210 VEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNC 256
            E  + +           +  +   E             +SP     
Sbjct: 64  SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALS 110

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (169), Expect = 1e-14
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 6/127 (4%)

Query: 24  IWMIISEADTLK-----KVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPEN 78
           +W ++     +          + R            +    D      I  D+PRT P  
Sbjct: 41  VWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI 100

Query: 79  IFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINK 138
             ++     Q  L RIL ++A+     GY QG+N +          E         V  K
Sbjct: 101 PLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIK 159

Query: 139 YFSDYYT 145
             S Y  
Sbjct: 160 DPSTYMV 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.96
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.82

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-30  Score=215.62  Aligned_cols=139  Identities=19%  Similarity=0.284  Sum_probs=116.0

Q ss_pred             hhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-----CCCcccHHHHHhccCccCCCC
Q psy3328           4 KKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-----ILDPDIGETIRTDLPRTFPEN   78 (337)
Q Consensus         4 ~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-----~~~~~~~~~I~~Dv~Rt~~~~   78 (337)
                      +.+++|+++++|||+.+|+.||+.++|+.+...+.++....+.+..|.......     ..+.+..++|++||.||+|++
T Consensus        21 ~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~  100 (194)
T d1fkma1          21 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI  100 (194)
T ss_dssp             CHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTS
T ss_pred             CHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCCcc
Confidence            568999999999999999999999999977666555555555666777766553     233456789999999999999


Q ss_pred             ccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcC----------------------------ChhHHHH
Q psy3328          79 IFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTK----------------------------HEENTYW  130 (337)
Q Consensus        79 ~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~----------------------------~e~~af~  130 (337)
                      ++|.. ..+++.|+|||.+||.+||++|||||||+|||+|+.++.                            .|++|||
T Consensus       101 ~~f~~-~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~  179 (194)
T d1fkma1         101 PLYQF-KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFW  179 (194)
T ss_dssp             GGGGS-HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHH
T ss_pred             ccccc-chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHH
Confidence            99987 567999999999999999999999999999999998752                            2789999


Q ss_pred             HHHHHHHHhhhhhc
Q psy3328         131 IFRSVINKYFSDYY  144 (337)
Q Consensus       131 ~~~~l~~~~~~~~~  144 (337)
                      ||.++|+. ++++|
T Consensus       180 ~f~~lm~~-i~d~y  192 (194)
T d1fkma1         180 CLTKLLEQ-ITDNY  192 (194)
T ss_dssp             HHHHHHGG-GGGGS
T ss_pred             HHHHHHHh-hhccC
Confidence            99999988 55554

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.7e-20  Score=153.82  Aligned_cols=121  Identities=21%  Similarity=0.383  Sum_probs=110.1

Q ss_pred             CchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCC-------------
Q psy3328         147 TLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGP-------------  213 (337)
Q Consensus       147 ~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~-------------  213 (337)
                      ++||++..+..++.+++.+||+||+||.+.|+++..|+.+|++|+|++++|++.++++||.+|++|+             
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~   80 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSND   80 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhh
Confidence            5789999999999999999999999999999999999999999999999999999999999999754             


Q ss_pred             --------------------------------------------------hHHHHHHHHHHHHcHHHHhCCCCHHHHHHH
Q psy3328         214 --------------------------------------------------KILFRVSLTLIKLHERALLECEDFTTLVEC  243 (337)
Q Consensus       214 --------------------------------------------------~~l~~~~lail~~~~~~il~~~~~~~i~~~  243 (337)
                                                                        .+..|+|+|++...|++|++. |+++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~~-df~~~l~~  159 (188)
T d1fkma2          81 IKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEM-DFQETITF  159 (188)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTC-CHHHHHHH
T ss_pred             hccccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHH
Confidence                                                              368899999999999999974 99999999


Q ss_pred             HHcCCCCC-cccccchhhhhHHHHHH
Q psy3328         244 FKSMVRSP-AVLNCHSFMSGLNYIAA  268 (337)
Q Consensus       244 l~~~~~~~-~~~d~~~~i~~a~~~~~  268 (337)
                      ++++|... ...|++.++.+|+..+.
T Consensus       160 Lq~~P~~~~~~~di~~ll~~A~~~~~  185 (188)
T d1fkma2         160 LQNPPTKDWTETDIEMLLSEAFIWQS  185 (188)
T ss_dssp             HTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCcccHHHHHHHHHHHHH
Confidence            99998754 34688899888876654