Psyllid ID: psy3344

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280--
MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKSRQSFSRI
cEEEccHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccHHHHccccccHHEEHHccccccccccccccHHHHccccccccccccccccccEEcccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHcccccEEEEEEcccEEEEEEEccccccccccccccEEEEEcccccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHccccccccccEEEEcccccccccEEEEcHHHHHHHHHcccccccEEEEEEEccccccccEEEEEEEEEccccccccEEEcccccccccccccccccEEEEccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEcEEEEccccccccccccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEEccccccccccccccHHHHHHccccccEEEcEEEEccccccccccEEEEcHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEEcccEEEEEEEEccccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccccEEEccccccccEEEEEEcccHHHHHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccc
ccEEEcHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccEEEEEccccHEEcccccEEEHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccEEEccccccccccHHHHcccccHEEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEcccccccccccccHHHHHHHHccHHHHHHccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHccccccccccccccHHHHccccEEEEEEcccEEEEEEEcccccccccccccEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccEEEEEEEEcccccEEEEEEcccccHcccccccHHHHHHHHHccccHccccEEEccHcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccEEEccccccccHHHcccccccEEEccccccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccccEcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccHHHHHcccHEEEEcccccccccccccHHHHHHHHHHccccccccccccccccccccEEEEcHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccccEEEEccHcccccccEEccHHHHHHHHHHHHHHHccHEEEEcccccccccEEEEEEEEEccccccccEEEcccccccHccccccEEEEEcccEcEEEEEccccccEEEEccccccEEEEEEHHHHHcccccccHcccccEEEEEEcccccccccEEEEccccccccccccccccccccccccHHHHHEEEEEccHcccEEEcccccEEEEEccccEcccccEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
MVLFNLYDDWLKTISSYTAFSRLILILRALHsdlrwskqtdvgithfrsgmshdedqlipnlyryiqpwesefiDSQRVWAEYALKRQEANAQNRRLTLEDledswdrgiprintlfqkdrhtlaydkgwRIRTEFKqyqdmnhtnsygiIRGLQFASFIVQYYGLVLDLLVLGLQrasemagppqmpndfltFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVlkqnpfwwthqrhdgklwnlnnYRTDMIQALGGVEGILehtlfkgtyfptweglfcaygnwfpgskpLIQQALAKIMKANPALYVLRERIRKALQlysseptepylssqnygelfsnqiiwfvddtnvYRVTIHKTfegnlttkpingaififnprtgQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHvntertkvilkpdkstitephhiwpslsddeWIKVEVQLKDLILAdygkknnvnvaSLTQSEIRDIILGmeisapsaqRQQIAEIEKQTKEQSQLTATTTRtvnkhgdeiitsttsnyetatfgsktEWRVRAISATNlhlrtnhiyvssddiketgytyilpknvlkKFVTISDLRAQIAGYlygvspadnpqvkeircivmppqwgthqtvhlpaslpghpylkemeplgwihtqpnelpqlspqdvtSHAKIMadnaswdgvrhdpnmkydlqlanpkefyheihrpahflnfssledgdgivNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKiglnskmpsrfppavfdqeLDALEIETVQketihprksykmnssCADVLLFAAYKwnvsrpslladskgkfppvvfytpkelgglgmlsmghvlIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNsmeisapsaQRQQIAEIEKQTKEQSQLTATTTRtvnkhgdeiitsttsnyetatfgsktEWRVRAISATNlhlrtnhiyvssddiketgytyilpknvlkKFVTISDLRAQIAGYLYDhlvcgrhervssdhtqdirrqsdhqtfiFHSQIiwfvddtnvYRVTIHKTfegnlttkpingaififnprtgQLFLKIIHTSVWAGQkrlgqlgeKTVVITcsftpgscsltaykltpsgfewgrqntdkgnnpkgylpshYERVQMLLSDRflgffmvpaqsswnynfmgvrhdpnmkydlqlanpkefyheihrpahflnfssledgdgvilkpdkstitephhiwpslsddeWIKVEVQLKDLILAdygksrqsfsri
MVLFNLYDDWLKTISSYTAFSRLILILRALhsdlrwskQTDVGITHFRsgmshdedqLIPNLYRYIQPWESEFIDSQRVWAEYALKRqeanaqnrrltledledswdrgiprintlfqkdrhtlaydkgwrirTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKtfegnlttkpiNGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRalhvntertkvilkpdkstitephhiwpslsddeWIKVEVQLKDLILadygkknnvnvaslTQSEIRDIILGMEISAPSAQRQQIAEIEKqtkeqsqltatttrtvnkhgdeiitsttsnyetatfgsktewRVRAISatnlhlrtnhiyvssddikeTGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRikiglnskmpsrFPPAVFDQELDALEIETVQketihprksykmnSSCADVLLFAAYKWNVSRPslladskgkfppVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEISAPSAQRQQIAEIEKqtkeqsqltatttrtvnkhgdeiitsttsnyetatfgsktewRVRAISatnlhlrtnhiyvssddikeTGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKtfegnlttkpiNGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPhhiwpslsddeWIKVEVQLKDLIladygksrqsfsri
MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYglvldllvlglQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKSRQSFSRI
*VLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRA***********DFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEI*************************************IITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHT***********************ASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVN*****************************************IITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERV************DHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGR**********GYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY**********
MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYAL**************EDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSS*********QNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEI******************************VNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVS********KGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEIS*****************************VNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYD**************TQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKSRQ*****
MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAE***************TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEIS**************************TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHE************QSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKSRQSFSRI
MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKSR******
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MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYAxxxxxxxxxxxxxxxxxxxxxWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKSRQSFSRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1282 2.2.26 [Sep-21-2011]
Q6P2Q92335 Pre-mRNA-processing-splic yes N/A 0.202 0.110 0.916 1e-147
Q99PV02335 Pre-mRNA-processing-splic yes N/A 0.203 0.111 0.913 1e-146
P343692329 Pre-mRNA-splicing factor yes N/A 0.198 0.109 0.805 1e-135
Q8T2952327 Pre-mRNA-processing-splic yes N/A 0.216 0.119 0.738 1e-113
O141872363 Pre-mRNA-splicing factor yes N/A 0.215 0.116 0.653 1e-103
P333342413 Pre-mRNA-splicing factor yes N/A 0.210 0.111 0.466 3e-69
>sp|Q6P2Q9|PRP8_HUMAN Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2 Back     alignment and function desciption
 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/277 (91%), Positives = 261/277 (94%)

Query: 420  AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
            AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADY
Sbjct: 1932 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADY 1991

Query: 480  GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG 539
            GKKNNVNVASLTQSEIRDIILGMEISAPS QRQQIAEIEKQTKEQSQLTAT TRTVNKHG
Sbjct: 1992 GKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHG 2051

Query: 540  DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVL 599
            DEIITSTTSNYET TF SKTEWRVRAISA NLHLRTNHIYVSSDDIKETGYTYILPKNVL
Sbjct: 2052 DEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVL 2111

Query: 600  KKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKE 659
            KKF+ ISDLRAQIAGYLYGVSP DNPQVKEIRCIVM PQWGTHQTVHLP  LP H YLKE
Sbjct: 2112 KKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKE 2171

Query: 660  MEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDG 696
            MEPLGWIHTQPNE PQLSPQDVT+HAKIMADN SWDG
Sbjct: 2172 MEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDG 2208
Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.
Homo sapiens (taxid: 9606)
>sp|Q99PV0|PRP8_MOUSE Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2 Back     alignment and function description
>sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1 Back     alignment and function description
>sp|Q8T295|PRP8_DICDI Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1 Back     alignment and function description
>sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp42 PE=1 SV=1 Back     alignment and function description
>sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1282
307103990 2305 hypothetical protein CHLNCDRAFT_58930 [C 0.315 0.175 0.639 1e-169
345480262 2380 PREDICTED: LOW QUALITY PROTEIN: pre-mRNA 0.175 0.094 0.927 1e-149
242012963 2374 pre-mRNA-processing-splicing factor, put 0.192 0.104 0.935 1e-149
332020392 2372 Pre-mRNA-processing-splicing factor 8 [A 0.175 0.094 0.927 1e-148
307211708 2372 Pre-mRNA-processing-splicing factor 8 [H 0.175 0.094 0.927 1e-148
307176253 2372 Pre-mRNA-processing-splicing factor 8 [C 0.175 0.094 0.927 1e-148
340716204 2374 PREDICTED: pre-mRNA-processing-splicing 0.200 0.108 0.927 1e-148
380019609 2374 PREDICTED: LOW QUALITY PROTEIN: pre-mRNA 0.200 0.108 0.927 1e-148
110749234 2374 PREDICTED: pre-mRNA-processing-splicing 0.200 0.108 0.927 1e-148
383855149 2374 PREDICTED: pre-mRNA-processing-splicing 0.200 0.108 0.927 1e-148
>gi|307103990|gb|EFN52246.1| hypothetical protein CHLNCDRAFT_58930 [Chlorella variabilis] Back     alignment and taxonomy information
 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 302/472 (63%), Positives = 350/472 (74%), Gaps = 67/472 (14%)

Query: 294  LFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGE 353
            L  ++GNWFPG+KPLI QALAKIMK NPA+YVLRER+RKALQLYSSEPTEPYLSSQNYGE
Sbjct: 1703 LHSSFGNWFPGAKPLIIQALAKIMKCNPAMYVLRERVRKALQLYSSEPTEPYLSSQNYGE 1762

Query: 354  LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 413
            LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 1763 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1822

Query: 414  KRLGQLA----FSRLILILRALHVNTERTKVI------LKPDKS-----TITEPHHIWPS 458
            KRL QLA       +  ++R+L V  +  ++I      LK +K        TEP  +  +
Sbjct: 1823 KRLSQLAKWKTAEEVAALIRSLPVEEQPKRIICSRKAALKIEKFGDLILKATEPQMLLFN 1882

Query: 459  LSDD----------------------------------------------------EWIK 466
            L DD                                                    +WIK
Sbjct: 1883 LYDDWLKTISSYTAFSRLVLILRALHVNVDKARMVLKPDKTIVTEPHHIWPSLTDEQWIK 1942

Query: 467  VEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQ 526
            VE+ LKDLILADY KKNNVNVA+LTQSEIRDIILG EI+ PS QRQQIAEIEKQ +E  Q
Sbjct: 1943 VEIALKDLILADYAKKNNVNVAALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAREGGQ 2002

Query: 527  LTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIK 586
            +TA TT+T N HGD++I +TTS YE A FGSKT+WRVRAISA NLHLR NHIYV+SDDI+
Sbjct: 2003 MTALTTKTTNVHGDDLIVTTTSPYEQAAFGSKTDWRVRAISAANLHLRVNHIYVNSDDIR 2062

Query: 587  ETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVH 646
            ++GYTY++PKN+LKKF+T++DLR QIAG LYGVSP DNPQVKE+RCIVMPPQWG HQ V+
Sbjct: 2063 DSGYTYVMPKNLLKKFITVADLRTQIAGLLYGVSPPDNPQVKEVRCIVMPPQWGNHQLVN 2122

Query: 647  LPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVR 698
            LP +LP H YL ++EPLGW+HTQPNE PQ++PQDVT+HAK++  + SWDG R
Sbjct: 2123 LPGALPEHDYLADLEPLGWLHTQPNETPQMAPQDVTAHAKMLETHKSWDGER 2174

Source: Chlorella variabilis

Species: Chlorella variabilis

Genus: Chlorella

Family: Chlorellaceae

Order: Chlorellales

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota
>gi|345480262|ref|XP_003424117.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242012963|ref|XP_002427193.1| pre-mRNA-processing-splicing factor, putative [Pediculus humanus corporis] gi|212511480|gb|EEB14455.1| pre-mRNA-processing-splicing factor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332020392|gb|EGI60812.1| Pre-mRNA-processing-splicing factor 8 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307211708|gb|EFN87711.1| Pre-mRNA-processing-splicing factor 8 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307176253|gb|EFN65884.1| Pre-mRNA-processing-splicing factor 8 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340716204|ref|XP_003396590.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380019609|ref|XP_003693696.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8-like [Apis florea] Back     alignment and taxonomy information
>gi|110749234|ref|XP_624014.2| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383855149|ref|XP_003703080.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1282
UNIPROTKB|A7Z0252335 PRPF8 "PRPF8 protein" [Bos tau 0.216 0.118 0.916 0.0
UNIPROTKB|E2R4X92335 PRPF8 "Uncharacterized protein 0.216 0.118 0.916 0.0
UNIPROTKB|Q6P2Q92335 PRPF8 "Pre-mRNA-processing-spl 0.216 0.118 0.916 0.0
UNIPROTKB|F1RHH82240 PRPF8 "Uncharacterized protein 0.216 0.123 0.916 0.0
UNIPROTKB|E1BZT52335 PRPF8 "Uncharacterized protein 0.216 0.118 0.913 0.0
ZFIN|ZDB-GENE-030131-5772342 prpf8 "pre-mRNA processing fac 0.216 0.118 0.909 0.0
WB|WBGene000041872329 prp-8 [Caenorhabditis elegans 0.216 0.118 0.805 1e-309
MGI|MGI:21793812335 Prpf8 "pre-mRNA processing fac 0.216 0.118 0.913 1.8e-294
UNIPROTKB|G3V6H22335 Prpf8 "Pre-mRNA processing fac 0.216 0.118 0.913 1.8e-294
TAIR|locus:21417912332 AT4G38780 [Arabidopsis thalian 0.215 0.118 0.739 1.1e-288
UNIPROTKB|A7Z025 PRPF8 "PRPF8 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 1330 (473.2 bits), Expect = 0., Sum P(5) = 0.
 Identities = 254/277 (91%), Positives = 261/277 (94%)

Query:   420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
             AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADY
Sbjct:  1932 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADY 1991

Query:   480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG 539
             GKKNNVNVASLTQSEIRDIILGMEISAPS QRQQIAEIEKQTKEQSQLTAT TRTVNKHG
Sbjct:  1992 GKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHG 2051

Query:   540 DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVL 599
             DEIITSTTSNYET TF SKTEWRVRAISA NLHLRTNHIYVSSDDIKETGYTYILPKNVL
Sbjct:  2052 DEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVL 2111

Query:   600 KKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKE 659
             KKF+ ISDLRAQIAGYLYGVSP DNPQVKEIRCIVM PQWGTHQTVHLP  LP H YLKE
Sbjct:  2112 KKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKE 2171

Query:   660 MEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDG 696
             MEPLGWIHTQPNE PQLSPQDVT+HAKIMADN SWDG
Sbjct:  2172 MEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDG 2208
GO:0071013 "catalytic step 2 spliceosome" evidence=IEA
GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA
UNIPROTKB|E2R4X9 PRPF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P2Q9 PRPF8 "Pre-mRNA-processing-splicing factor 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHH8 PRPF8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZT5 PRPF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-577 prpf8 "pre-mRNA processing factor 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00004187 prp-8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:2179381 Prpf8 "pre-mRNA processing factor 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6H2 Prpf8 "Pre-mRNA processing factor 8, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2141791 AT4G38780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1282
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 2e-94
cd08056252 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) d 1e-90
cd08056252 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) d 1e-67
pfam08084110 pfam08084, PROCT, PROCT (NUC072) domain 7e-62
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 9e-58
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 3e-57
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 2e-54
pfam12134231 pfam12134, PRP8_domainIV, PRP8 domain IV core 3e-51
pfam12134231 pfam12134, PRP8_domainIV, PRP8 domain IV core 1e-40
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 1e-37
cd08056252 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) d 4e-35
pfam10597136 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 6e-35
pfam10596160 pfam10596, U6-snRNA_bdg, U6-snRNA interacting doma 9e-34
pfam1059894 pfam10598, RRM_4, RNA recognition motif of the spl 1e-32
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 1e-28
pfam12134231 pfam12134, PRP8_domainIV, PRP8 domain IV core 4e-28
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 5e-26
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 4e-22
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 1e-19
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 9e-19
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 7e-17
pfam12134231 pfam12134, PRP8_domainIV, PRP8 domain IV core 4e-15
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 4e-15
pfam10597136 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 9e-15
cd08056252 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) d 1e-14
pfam08084110 pfam08084, PROCT, PROCT (NUC072) domain 2e-14
pfam12134231 pfam12134, PRP8_domainIV, PRP8 domain IV core 2e-14
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 5e-10
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 1e-09
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 1e-08
COG51782365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 3e-04
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information 
 Score =  335 bits (861), Expect = 2e-94
 Identities = 140/282 (49%), Positives = 182/282 (64%), Gaps = 5/282 (1%)

Query: 420  AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
            AFSRL+L+LRAL VN ER K IL+PDKS IT+ +H+WP  SD +WIK E+QL+DLIL  Y
Sbjct: 1961 AFSRLLLVLRALDVNEERVKEILRPDKSIITKINHLWPGFSDSQWIKKEIQLRDLILDRY 2020

Query: 480  GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKE--QSQLTATTTRTVNK 537
              K+N+N + LTQSE+RDIILG  ISAPS  RQ+ AE EKQ  E   S+ T  +T+T+N 
Sbjct: 2021 CSKHNINPSGLTQSEVRDIILGFRISAPSGARQETAETEKQNSEKALSRPTNVSTKTING 2080

Query: 538  HGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETG-YTYILPK 596
             G E +      YE   F SK EWR  AI    L LRT +IYV++D+ +E+    Y LP 
Sbjct: 2081 WGREYVVLDGMIYEGEKFSSKEEWRSEAIRTGPLELRTKNIYVTADENEESIQQMYRLPL 2140

Query: 597  NVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGH-P 655
            N+L+KF+ ISD   Q+AG +YG S +DNPQ+KEI    + PQ G+   V   + +P   P
Sbjct: 2141 NLLEKFMRISDPHVQVAGLVYGKSGSDNPQIKEILSFGLVPQLGSLSGVQSSSFVPHDLP 2200

Query: 656  YLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGV 697
              +++E LGWIHTQ +ELP L    V +H K + D   WD V
Sbjct: 2201 GDEDLEILGWIHTQDDELPYLEVAGVLTHRKKIVDP-EWDAV 2241

Length = 2365
>gnl|CDD|163687 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>gnl|CDD|163687 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>gnl|CDD|219717 pfam08084, PROCT, PROCT (NUC072) domain Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core Back     alignment and domain information
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|163687 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>gnl|CDD|119117 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8 Back     alignment and domain information
>gnl|CDD|151125 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8 Back     alignment and domain information
>gnl|CDD|192639 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8 Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|119117 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8 Back     alignment and domain information
>gnl|CDD|163687 cd08056, MPN_PRP8, Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>gnl|CDD|219717 pfam08084, PROCT, PROCT (NUC072) domain Back     alignment and domain information
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1282
KOG1795|consensus2321 100.0
COG51782365 PRP8 U5 snRNP spliceosome subunit [RNA processing 100.0
KOG1795|consensus 2321 100.0
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 100.0
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 100.0
PF12134231 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR0 100.0
PF12134231 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR0 100.0
PF08084125 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 100.0
PF10596160 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; 100.0
PF10597135 U5_2-snRNA_bdg: U5-snRNA binding site 2 of PrP8; I 100.0
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.94
PF1059893 RRM_4: RNA recognition motif of the spliceosomal P 99.94
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 99.51
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 99.28
PF08084125 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 98.65
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 98.16
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 97.83
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 96.54
cd08061274 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l 95.42
PF05021306 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge 95.4
KOG2880|consensus424 94.17
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 87.87
KOG2834|consensus510 81.84
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 80.27
>KOG1795|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.9e-282  Score=2416.22  Aligned_cols=565  Identities=91%  Similarity=1.402  Sum_probs=559.1

Q ss_pred             hhcccccccccccccccceeeccCCCCCccccchhhhhccccchhhhhhhHHHHHHHHHHHHHHHHhccccccccccccc
Q psy3344          27 LRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSW  106 (1282)
Q Consensus        27 ~~~~~sdl~~skqtd~githfr~gmsh~ed~lIP~l~rYi~~We~Ef~dSqrvW~eya~kr~ea~~qnrrlt~edle~sw  106 (1282)
                      ++.||||||||||||+|||||||||||||||||||+||||+|||+||+||||||||||+|||||.+||||||+|||||||
T Consensus      1326 ilip~sDl~wskqtd~githfrsgm~h~~~~lIP~l~rYiq~We~EF~dSqRVWaEYa~krqea~~qnrrltledle~sw 1405 (2321)
T KOG1795|consen 1326 ILIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAPAQNRRLTLEDLEDSW 1405 (2321)
T ss_pred             EeechhhcccccccCccceeecccCCcchhhhhhHHHHhcchhhhhhhhHHHHHHHHHhhhhhhhhhccccchhhhcccc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccccccccccccceeeecccccccccCccccceeeccccchhhhhhHHHHHHHHhhhhcccccccCCCC
Q psy3344         107 DRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQ  186 (1282)
Q Consensus       107 drGiPRInTLFqkdrhtlayDkG~Rvr~~fk~yKDM~h~n~yGlIrGlqFssFi~QyyglvlDlLvLGl~Ra~eiaGp~~  186 (1282)
                      |||||||||||||||||||||||||||+|||+|+                                              
T Consensus      1406 DrGIPRinTLfQkdRhtLaYDkG~RvrteFkqYq---------------------------------------------- 1439 (2321)
T KOG1795|consen 1406 DRGIPRINTLFQKDRHTLAYDKGWRVRTEFKQYQ---------------------------------------------- 1439 (2321)
T ss_pred             ccCCchhhHHHhhcchhheecccchHHHHHHHHh----------------------------------------------
Confidence            9999999999999999999999999999999876                                              


Q ss_pred             CCCcccccccchhhhcCCccccccccceEEEEEEeeccccccccccchhhhhhhcccCCCCcccccCCCccccccchhhH
Q psy3344         187 MPNDFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD  266 (1282)
Q Consensus       187 ~pn~fl~f~d~~~e~~hPIrly~Ry~d~i~ilfrf~~~~~~~~~~~~~~~~~~~~k~npfwwT~~~HDGKLWnln~yrtD  266 (1282)
                                                                           ++|+|||||||||||||||||||||+|
T Consensus      1440 -----------------------------------------------------~~k~npFWwT~qrHDGKLWnln~yrtD 1466 (2321)
T KOG1795|consen 1440 -----------------------------------------------------VLKQNPFWWTHQRHDGKLWNLNNYRTD 1466 (2321)
T ss_pred             -----------------------------------------------------ccCCCCceecccccCcccccccchhHH
Confidence                                                                 899999999999999999999999999


Q ss_pred             HHHhccCcceeeeeecccccccCCcccch---------------------------------------------------
Q psy3344         267 MIQALGGVEGILEHTLFKGTYFPTWEGLF---------------------------------------------------  295 (1282)
Q Consensus       267 ~iqaLggve~ileHtlfkgt~f~sweglF---------------------------------------------------  295 (1282)
                      |||||||||||||||||||||||+|||||                                                   
T Consensus      1467 ~iqALGGVegilehtlf~~t~f~s~e~Lfwekasgfees~k~KkltnaQr~gL~QipNrrftlwwspTinrAnvyvgfQv 1546 (2321)
T KOG1795|consen 1467 VIQALGGVEGILEHTLFKGTYFPSWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV 1546 (2321)
T ss_pred             HHHHhcCcchhhhcccccccCcHHHHHHHHHhhcCchhhhHHHHHHHHHHhcccCCCccceEEeecchhhhhhheeeeEE
Confidence            99999999999999999999999999999                                                   


Q ss_pred             ----------------------------------------h---------------------------------------
Q psy3344         296 ----------------------------------------C---------------------------------------  296 (1282)
Q Consensus       296 ----------------------------------------c---------------------------------------  296 (1282)
                                                              |                                       
T Consensus      1547 QldLTgi~mhgkIptlkIsLiqifRaHlwQKihesvv~~lc~v~D~ELDal~iEtV~ketih~rKsykm~SScAdIll~~ 1626 (2321)
T KOG1795|consen 1547 QLDLTGIYMHGKIPTLKISLIQIFRAHLWQKIHESVVNDLCQVFDQELDALSIETVQKETIHPRKSYKMNSSCADILLGA 1626 (2321)
T ss_pred             eeccceeEEeccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhcCcchhhhccchhHHHhhhc
Confidence                                                    1                                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy3344         297 --------------------------------------------------------------------------------  296 (1282)
Q Consensus       297 --------------------------------------------------------------------------------  296 (1282)
                                                                                                      
T Consensus      1627 ~~~~~vs~ps~i~~skd~~~~~~~~klw~dvqLr~gdyds~dv~rytrAkfLd~Ttd~~s~ypsptGv~i~iDL~YN~~s 1706 (2321)
T KOG1795|consen 1627 GVKWGVSNPSLIPESKDLWDPFFTAKLWIDVQLRWGDYDSHDVERYTRAKFLDYTTDNASQYPSPTGVLIGIDLAYNLHS 1706 (2321)
T ss_pred             ceeecCCCccccccchhhccccchhhhhhhhhhhccchhhhhHHHHHHhhhhhhhccccccCCCCCceEEEeeehhhhhh
Confidence                                                                                            


Q ss_pred             cccccCCCChHHHHHHHHHHHHhCchhHHHHHHHHhhhccccCCCCCCCcccccccccccCceEEEecCceeEEEEeeec
Q psy3344         297 AYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT  376 (1282)
Q Consensus       297 ayGnw~~glK~liq~aM~kImk~NpaL~vLRERIRKgLQLYsSe~~e~~l~s~Ny~ELF~n~~~wfVDdtnvYRvtihkt  376 (1282)
                      ||||||||+|||||+||+||||+||||||||||||||||||+|+|+||||+|+||||||+||++||||||||||||||||
T Consensus      1707 ayGNw~~g~Kpli~qsM~kImkanpalyvLRERiRKgLQlYsSe~~e~~l~ssNygeLFsnqi~lfVDdtnvyRvtihkt 1786 (2321)
T KOG1795|consen 1707 AYGNWFPGLKPLIQQSMNKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSSNYGELFSNQIILFVDDTNVYRVTIHKT 1786 (2321)
T ss_pred             hhcccccccHHHHHHHHHHHHhhCcHHHHHHHHHHHhhhhhccCCCCceeccccHHHhhhcceEEEEeccceEEEEeeec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH-------------------------------------
Q psy3344         377 FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL-------------------------------------  419 (1282)
Q Consensus       377 ~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql-------------------------------------  419 (1282)
                      ||||+||||||||||||||+||||||||||||||||||||||+                                     
T Consensus      1787 fegnlttk~ingaiFi~nPrtG~LflKiihtsvwaGqkrl~qlaKwktAeeVaaLirslp~EEqpkqiIVtrk~MlDplE 1866 (2321)
T KOG1795|consen 1787 FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLE 1866 (2321)
T ss_pred             cccccccccccceEEEecCCCCceEEEEeecccccchhHHHHHHhHhhHHHHHHHHhcCChhhcCceEEEechhccChHH
Confidence            9999999999999999999999999999999999999999999                                     


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHhcccCcccceee
Q psy3344         420 ----------------------------------------------------------AFSRLILILRALHVNTERTKVI  441 (1282)
Q Consensus       420 ----------------------------------------------------------AFsRLiLILRal~vn~~rtk~I  441 (1282)
                                                                                |||||||||||||||+||||+|
T Consensus      1867 vhllDfPnI~ik~sel~lPFqa~m~i~k~~dlilkatEpqmvlfNlYddWl~tissyTaFsRliLilral~vn~e~~k~i 1946 (2321)
T KOG1795|consen 1867 VHLLDFPNIVIKGSELQLPFQACMKIEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNEERAKMI 1946 (2321)
T ss_pred             HhhccCCceeeecccccccHHHHhhHHHHhhHHhhccCceEEEEehhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhh
Confidence                                                                      9999999999999999999999


Q ss_pred             ccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHHhcccCCccccccchhhhhhhhhccccCCchHHHHHHHHHHHhh
Q psy3344         442 LKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQT  521 (1282)
Q Consensus       442 L~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~dY~kknnVnvssLTQsEIRDIILG~eI~~ps~qrqqiaeiE~~~  521 (1282)
                      |+|||+++|++||+||+|||+|||+||+|||||||+|||||||||++||||||||||||||+|+|||+|||||||||||.
T Consensus      1947 l~~d~t~i~~~~hiWP~~tD~qWikvE~qlkDLIl~dY~kk~nvn~s~LtqsEirDIilG~~isaps~qrqqiaeiekq~ 2026 (2321)
T KOG1795|consen 1947 LKPDKTTITEPHHIWPSLTDEQWIKVEVQLKDLILADYGKKNNVNVSSLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT 2026 (2321)
T ss_pred             cCCCcceeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHhhhheeeeecCcchhhHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccceeEEEEEecccCCeEEEEeccccccccccCchhHHHHHHHcccccccccceeeecccccccceeeeccchhhcc
Q psy3344         522 KEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKK  601 (1282)
Q Consensus       522 ~~~~q~ta~tTkT~N~hGeeIvvtTtS~YEqqtFsSKtdWR~RAIsatnL~LR~~nIYVssdD~~e~~~tyViPKNlLkK  601 (1282)
                      +|++|+||++|+|+|+|||||+|+|+++||+++|+||++||+|||++++|+||++||||++||++|+++||+||||||||
T Consensus      2027 ~e~~q~ta~~t~t~n~~gde~i~~~ts~ye~~~f~sk~eWr~~ais~t~l~Lr~~~iyvnsddi~e~~~tyilPkNllkk 2106 (2321)
T KOG1795|consen 2027 KEQSQLTAVTTRTTNVHGDEIIVTTTSNYETQTFSSKTEWRVRAISATNLPLRTNHIYVNSDDIKETGYTYILPKNLLKK 2106 (2321)
T ss_pred             hhhhhheeeceeeecccCceEEEEecccchhhhccchHHHHHHHHhccCcceecceeeecchhhhhcCceeeccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeeeccceEEEEEEccCCCCCCcceeEEEEEcCCCccccceeecCCCCCCCCCcCCCCcceeeecCCCCCCCCChHhH
Q psy3344         602 FVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDV  681 (1282)
Q Consensus       602 FI~ISDlRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~~sV~lp~~LP~h~~L~dLEpLGWIHTQ~~El~~Lsp~DV  681 (1282)
                      ||+|||+|+|||||+||.||+||||||||+|||||||+|++++|++|.++|.|+.+.|||+|||||||++|+++|+|+||
T Consensus      2107 Fi~isD~r~qiag~~yG~s~~d~pqvkeIr~ivmvPQ~gs~~~v~lp~~lP~~~~l~d~e~Lgw~hTq~~el~~lsp~dV 2186 (2321)
T KOG1795|consen 2107 FITISDLRTQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGSHQGVHLPSFLPIHGVLEDLEPLGWIHTQPNELPQLSPQDV 2186 (2321)
T ss_pred             heeecchhhhhheeeeccCCCCCCccceEEEEEeccccccccccccCccCCcchhccCCcccchhhcCccccccCCHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc
Q psy3344         682 TSHAKIMAD  690 (1282)
Q Consensus       682 tthAkl~~d  690 (1282)
                      ++|||++.+
T Consensus      2187 ~th~ki~~~ 2195 (2321)
T KOG1795|consen 2187 TTHAKILVD 2195 (2321)
T ss_pred             hhhhhhhhc
Confidence            999999553

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1795|consensus Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length Back     alignment and domain information
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length Back     alignment and domain information
>PF08084 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [] Back     alignment and domain information
>PF10596 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; InterPro: IPR019580 This entry represents the interacting site for U6-snRNA, which is part of U4/U6 Back     alignment and domain information
>PF10597 U5_2-snRNA_bdg: U5-snRNA binding site 2 of PrP8; InterPro: IPR019581 The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [] Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>PF10598 RRM_4: RNA recognition motif of the spliceosomal PrP8; InterPro: IPR019582 The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>PF08084 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [] Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain Back     alignment and domain information
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport Back     alignment and domain information
>KOG2880|consensus Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>KOG2834|consensus Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1282
2p87_A273 Crystal Structure Of The C-Terminal Domain Of C. El 8e-78
2p8r_A273 Crystal Structure Of The C-Terminal Domain Of C. El 2e-77
3sbg_A565 Crystal Structure Of A Prp8 C-Terminal Fragment Len 3e-71
3sbg_A565 Crystal Structure Of A Prp8 C-Terminal Fragment Len 2e-51
3sbg_A 565 Crystal Structure Of A Prp8 C-Terminal Fragment Len 1e-24
3sbg_A 565 Crystal Structure Of A Prp8 C-Terminal Fragment Len 3e-06
4i43_B1564 Crystal Structure Of Prp8:aar2 Complex Length = 156 6e-71
4i43_B1564 Crystal Structure Of Prp8:aar2 Complex Length = 156 3e-51
4i43_B 1564 Crystal Structure Of Prp8:aar2 Complex Length = 156 3e-24
4i43_B 1564 Crystal Structure Of Prp8:aar2 Complex Length = 156 3e-06
3zef_B1531 Crystal Structure Of Prp8:aar2 Complex: Second Crys 7e-71
3zef_B1531 Crystal Structure Of Prp8:aar2 Complex: Second Crys 3e-51
3zef_B 1531 Crystal Structure Of Prp8:aar2 Complex: Second Crys 3e-24
3e9l_A257 Crystal Structure Of Human Prp8, Residues 1755-2016 2e-41
3e9l_A257 Crystal Structure Of Human Prp8, Residues 1755-2016 1e-39
3e9l_A257 Crystal Structure Of Human Prp8, Residues 1755-2016 3e-32
3e9l_A257 Crystal Structure Of Human Prp8, Residues 1755-2016 6e-17
2og4_A254 Structure Of An Expanded Jab1-mpn-like Domain Of Sp 1e-37
3enb_A222 Crystal Structure Of Prp8 Core Domain Iv Length = 2 2e-35
3enb_A222 Crystal Structure Of Prp8 Core Domain Iv Length = 2 5e-32
3enb_A222 Crystal Structure Of Prp8 Core Domain Iv Length = 2 1e-14
3e66_A282 Crystal Structure Of The Beta-Finger Domain Of Yeas 1e-32
3e66_A282 Crystal Structure Of The Beta-Finger Domain Of Yeas 1e-24
3e66_A282 Crystal Structure Of The Beta-Finger Domain Of Yeas 2e-24
3e9p_A255 Crystal Structure Of Yeast Prp8, Residues 1827-2092 4e-30
3e9p_A255 Crystal Structure Of Yeast Prp8, Residues 1827-2092 2e-24
3sbt_A260 Crystal Structure Of A Aar2-prp8 Complex Length = 2 1e-28
3sbt_A260 Crystal Structure Of A Aar2-prp8 Complex Length = 2 1e-24
3e9o_A258 Crystal Structure Of Yeast Prp8, Residues 1836-2092 3e-28
3e9o_A258 Crystal Structure Of Yeast Prp8, Residues 1836-2092 2e-24
3e9o_A258 Crystal Structure Of Yeast Prp8, Residues 1836-2092 1e-05
3lru_A160 Hprp8 Non-Native Subdomain Length = 160 3e-24
3lru_A160 Hprp8 Non-Native Subdomain Length = 160 1e-14
>pdb|2P87|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans Pre-Mrna Splicing Factor Prp8 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  289 bits (739), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/282 (53%), Positives = 191/282 (67%), Gaps = 22/282 (7%)
Query: 955  TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 1014
            TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1    TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 1015 IAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFE- 1073
            IAG++Y        +         + +   HQ     +Q+     D  + R      FE 
Sbjct: 61   IAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQL----PDHELLR-----DFEP 111
Query: 1074 -GNLTTKPINGAIFIFNPRTGQLFLKIIHTSV-WAGQKRLGQLGEKTVVITCSFTPGSCS 1131
             G + T+P    +   +P+      K++  ++ W G        EKTV+ITCSFTPGS S
Sbjct: 112  LGWMHTQP--NELPQLSPQDVTTHAKLLTDNISWDG--------EKTVMITCSFTPGSVS 161
Query: 1132 LTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFM 1191
            LTAYKLTPSG+EWG+ NTDKGNNPKGY+P+HYE+VQMLLSDRFLG+FMVP+   WNYNF 
Sbjct: 162  LTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQ 221
Query: 1192 GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGV 1233
            G R  P MK+D+ L+NPKE+YHE HRP HF NF + +D  G 
Sbjct: 222  GQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGT 263
>pdb|2P8R|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans Pre-Mrna Splicing Factor Prp8 Carrying R2303k Mutant Length = 273 Back     alignment and structure
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment Length = 565 Back     alignment and structure
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment Length = 565 Back     alignment and structure
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment Length = 565 Back     alignment and structure
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment Length = 565 Back     alignment and structure
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex Length = 1564 Back     alignment and structure
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex Length = 1564 Back     alignment and structure
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex Length = 1564 Back     alignment and structure
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex Length = 1564 Back     alignment and structure
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 1531 Back     alignment and structure
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 1531 Back     alignment and structure
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 1531 Back     alignment and structure
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016 Length = 257 Back     alignment and structure
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016 Length = 257 Back     alignment and structure
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016 Length = 257 Back     alignment and structure
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016 Length = 257 Back     alignment and structure
>pdb|2OG4|A Chain A, Structure Of An Expanded Jab1-mpn-like Domain Of Splicing Factor Prp8p From Yeast Length = 254 Back     alignment and structure
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv Length = 222 Back     alignment and structure
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv Length = 222 Back     alignment and structure
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv Length = 222 Back     alignment and structure
>pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8 Length = 282 Back     alignment and structure
>pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8 Length = 282 Back     alignment and structure
>pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8 Length = 282 Back     alignment and structure
>pdb|3E9P|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1827-2092 Length = 255 Back     alignment and structure
>pdb|3E9P|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1827-2092 Length = 255 Back     alignment and structure
>pdb|3SBT|A Chain A, Crystal Structure Of A Aar2-prp8 Complex Length = 260 Back     alignment and structure
>pdb|3SBT|A Chain A, Crystal Structure Of A Aar2-prp8 Complex Length = 260 Back     alignment and structure
>pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092 Length = 258 Back     alignment and structure
>pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092 Length = 258 Back     alignment and structure
>pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092 Length = 258 Back     alignment and structure
>pdb|3LRU|A Chain A, Hprp8 Non-Native Subdomain Length = 160 Back     alignment and structure
>pdb|3LRU|A Chain A, Hprp8 Non-Native Subdomain Length = 160 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1282
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 1e-129
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 2e-98
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 1e-34
3sbg_A 565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 3e-28
3sbg_A 565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 5e-15
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 2e-12
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 1e-09
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 3e-94
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 4e-76
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 6e-16
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 5e-86
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 1e-66
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 8e-14
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 1e-44
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 2e-36
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 1e-29
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 2e-16
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 5e-10
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 2e-43
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 7e-43
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 5e-32
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 3e-16
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 1e-10
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 5e-38
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 1e-32
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 6e-28
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 3e-16
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 6e-11
2znr_A178 AMSH-like protease; metal binding protein, alterna 1e-14
2znr_A178 AMSH-like protease; metal binding protein, alterna 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 2e-11
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 9e-05
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
 Score =  407 bits (1047), Expect = e-129
 Identities = 128/291 (43%), Positives = 189/291 (64%), Gaps = 10/291 (3%)

Query: 410 WAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEV 469
           W  +      AFSRL L+LRAL  N E  K+IL  D +   + +H+WPS +D++WI +E 
Sbjct: 163 WLDRISSYT-AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIES 221

Query: 470 QLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQ----- 524
           Q++DLIL +YG+K NVN+++LTQ+EI+DIILG  I APS +RQ++AE+E    E+     
Sbjct: 222 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 281

Query: 525 --SQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 582
                T   T+T+N  G+EI+   +++YE+ TF SK EWR  AI+ T L+LR  +IYVS+
Sbjct: 282 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 341

Query: 583 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTH 642
           DD  E    Y+LPKN+LKKF+ ISD++ Q+A ++YG+S  D+P+VKEI+ +V+ PQ G  
Sbjct: 342 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 401

Query: 643 QTVHLPASLPGHPY--LKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADN 691
            +V +            + +E LGWIHTQ  EL  ++  +V +H+K+ AD 
Sbjct: 402 GSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADK 452
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Length = 273 Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Length = 273 Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Length = 273 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3e66_A 3e9o_A* 3e9p_A Length = 260 Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3e66_A 3e9o_A* 3e9p_A Length = 260 Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3e66_A 3e9o_A* 3e9p_A Length = 260 Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3e66_A 3e9o_A* 3e9p_A Length = 260 Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3e66_A 3e9o_A* 3e9p_A Length = 260 Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Length = 257 Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Length = 257 Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Length = 257 Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Length = 257 Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Length = 257 Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Length = 222 Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Length = 222 Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Length = 222 Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Length = 222 Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Length = 222 Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1282
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 100.0
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 100.0
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 100.0
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 100.0
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 100.0
3sbg_A 565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 100.0
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 100.0
3sbt_A260 PRE-mRNA-splicing factor 8; rnaseh like domain, VH 100.0
3e9l_A257 PRE-mRNA-processing-splicing factor 8; nucleotidyl 100.0
3enb_A222 PRE-mRNA-processing-splicing factor 8; PRP8 domain 100.0
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 99.95
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 99.94
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.42
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.36
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.13
2znr_A178 AMSH-like protease; metal binding protein, alterna 98.94
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=8.2e-190  Score=1585.15  Aligned_cols=345  Identities=53%  Similarity=0.905  Sum_probs=288.6

Q ss_pred             CcccccccccccCceEEEecCceeEEEEeeecccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH-----
Q psy3344         345 YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL-----  419 (1282)
Q Consensus       345 ~l~s~Ny~ELF~n~~~wfVDdtnvYRvtihkt~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql-----  419 (1282)
                      ||||+|||||||||++||||||||||||||||||||+||||||||||||||||||||||||||||||||||||||     
T Consensus         2 ~Lns~Ny~eLF~nq~~~fvDDtnVYRVtihkTfEGN~tTKpiNGaififNP~TGqLfLKiIHtsvwaGQKRl~QlaKWKt   81 (565)
T 3sbg_A            2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT   81 (565)
T ss_dssp             CBCTTGGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSSHHHHHHHHH
T ss_pred             cccccchHHHhcCceEEEEeCCcEEEEEEEeeccCceeeccccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHhHhH
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             --------------------------------------------------------------------------------
Q psy3344         420 --------------------------------------------------------------------------------  419 (1282)
Q Consensus       420 --------------------------------------------------------------------------------  419 (1282)
                                                                                                      
T Consensus        82 AEEvaaLirSlP~EEqPkqiIvtrkgmlDpLevhllDfPni~ik~seL~lPF~a~mkiek~~D~ilkAtepqmvlfnlYD  161 (565)
T 3sbg_A           82 AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYD  161 (565)
T ss_dssp             HHHHHHHHHHSCTTTSCSEEEESSGGGHHHHHHHTTTCTTSEEECBSSCCGGGGGGSSHHHHHHHHHCCSCEEEEEETTT
T ss_pred             HHHHHHHHhcCCHhhCCceEEEechhhhhhHHHhhccCCCceeeccccccCHHHHhhhHHHHHHHhhcCCCcEEEEEeeh
Confidence                                                                                            


Q ss_pred             ----------HHHHHHHHHHhcccCcccceeeccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHHhcccCCccccc
Q psy3344         420 ----------AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVAS  489 (1282)
Q Consensus       420 ----------AFsRLiLILRal~vn~~rtk~IL~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~dY~kknnVnvss  489 (1282)
                                |||||||||||||||++|||+||+||++++|++||+||+|||+|||+||++||||||+|||||||||++|
T Consensus       162 dWL~siSsyTAFsRliLiLRal~vn~~ktk~iL~pd~~~~t~~hHiWPslsd~~Wi~vE~~lkDLIL~dY~kknnvn~~s  241 (565)
T 3sbg_A          162 DWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA  241 (565)
T ss_dssp             TGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHTSSTTSCBCTTCSSBCCCHHHHHHHHHHHHHHHHHTTTTTSCCCGGG
T ss_pred             hhhhcccchHHHHHHHHHHHHhccCHHHHHHHhcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCcCccc
Confidence                      9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhhccccCCchHHHHHHHHHHHhhhh-------cccceeEEEEEecccCCeEEEEeccccccccccCchhHH
Q psy3344         490 LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKE-------QSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWR  562 (1282)
Q Consensus       490 LTQsEIRDIILG~eI~~ps~qrqqiaeiE~~~~~-------~~q~ta~tTkT~N~hGeeIvvtTtS~YEqqtFsSKtdWR  562 (1282)
                      |||||||||||||||+|||+|||||||||++.++       ++|+||+||||+|+|||||+|+|+||||||+|+||||||
T Consensus       242 LTqsEIrDIILG~~i~~pS~qrqq~aeie~~~~~~~~~~~~~~q~Ta~tTkT~NvhGeeIiv~Tts~YEqq~FsSKtdWR  321 (565)
T 3sbg_A          242 LTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWR  321 (565)
T ss_dssp             CCHHHHHHHHHTC-------------------------------------------------------------CHHHHH
T ss_pred             ccHhhHhhhhhccccCCcchHHHHHHHHHHhhhcccccchhhhceeEEEEEEEecCCCEEEEEecCcccccccccccchH
Confidence            9999999999999999999999999999999998       889999999999999999999999999999999999999


Q ss_pred             HHHHHcccccccccceeeecccccccceeeeccchhhccceEeeeccceEEEEEEccCCCCCCcceeEEEEEcCCCcccc
Q psy3344         563 VRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTH  642 (1282)
Q Consensus       563 ~RAIsatnL~LR~~nIYVssdD~~e~~~tyViPKNlLkKFI~ISDlRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~  642 (1282)
                      +||||++|||||+|||||++||+.|++++||||||||+|||+|||+||||||||||+||+||||||||+|||||||+|++
T Consensus       322 ~RAIaatnL~lR~~nIYV~sdd~~e~~~tyVlPkNLLkKFI~IADlrTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~  401 (565)
T 3sbg_A          322 KSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV  401 (565)
T ss_dssp             HHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHHSCSSSCCEEEEEEEEETTEEEEEEEEEEECCCEEECS
T ss_pred             HHHhhhcchhhhhceEEECcccccCCCcEEEccHHHHHHHHHHhhccceeEEEEecCCCCCCCCeEEEEEEEECCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCCCCC---CcCCCCcceeeecCCCCCCCCChHhHHHHHHhhhc
Q psy3344         643 QTVHLPASLPGHP---YLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMAD  690 (1282)
Q Consensus       643 ~sV~lp~~LP~h~---~L~dLEpLGWIHTQ~~El~~Lsp~DVtthAkl~~d  690 (1282)
                      ++|++| .+|+|+   +++|||+||||||||+|+++|||.|+++||++|++
T Consensus       402 ~sv~lp-~lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~  451 (565)
T 3sbg_A          402 GSVQIS-NIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD  451 (565)
T ss_dssp             SCEEEC-CCCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSS
T ss_pred             ceEECC-CCCccccccccccCEecceeeecCCcccccCHHHHHHHHHHHHh
Confidence            999999 999999   89999999999999999999999999999999764
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Back     alignment and structure
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A Back     alignment and structure
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14 Back     alignment and structure
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1282
d3e9oa1253 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8 1e-44
d3e9oa1253 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8 3e-44
d3e9oa1253 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8 7e-37
d3e9oa1253 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8 2e-17
d3e9oa1253 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8 4e-13
d3enba1219 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8 3e-39
d3enba1219 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8 1e-36
d3enba1219 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8 3e-29
d3enba1219 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8 5e-16
d3enba1219 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8 2e-14
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 253 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Prp8 beta-finger domain-like
domain: Pre-mRNA-splicing factor 8, Prp8
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  159 bits (405), Expect = 1e-44
 Identities = 57/75 (76%), Positives = 63/75 (84%)

Query: 346 LSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKII 405
           ++S NY ELF+N I  FVDDTNVYRVT+HKTFEGN+ TK ING IF  NP+TG LFLKII
Sbjct: 1   MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 60

Query: 406 HTSVWAGQKRLGQLA 420
           HTSVWAGQKRL QLA
Sbjct: 61  HTSVWAGQKRLSQLA 75
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Length = 219 Back     information, alignment and structure
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Length = 219 Back     information, alignment and structure
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Length = 219 Back     information, alignment and structure
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Length = 219 Back     information, alignment and structure
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1282
d3e9oa1253 Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces ce 100.0
d3enba1219 Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapi 100.0
d3e9oa1253 Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces ce 100.0
d3enba1219 Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapi 100.0
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Prp8 beta-finger domain-like
domain: Pre-mRNA-splicing factor 8, Prp8
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=1.2e-74  Score=601.09  Aligned_cols=158  Identities=64%  Similarity=1.074  Sum_probs=156.8

Q ss_pred             cccccccccccCceEEEecCceeEEEEeeecccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH------
Q psy3344         346 LSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL------  419 (1282)
Q Consensus       346 l~s~Ny~ELF~n~~~wfVDdtnvYRvtihkt~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql------  419 (1282)
                      |||+||||||+|+++||||||||||||+|+|||||++|||||||||||||+|||||||||||||||||||||||      
T Consensus         1 l~s~Ny~eLF~n~~~~fVDDtnvYrvt~hkt~egn~~tkpiNG~ifIfNP~tGqLflKiiHtSvwaGQKRl~qLaKwktA   80 (253)
T d3e9oa1           1 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTA   80 (253)
T ss_dssp             BCTTSGGGGGSSSCEEEEECTTSSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHHH
T ss_pred             CCcccHHHHhcCCeEEEEecCceEEEEEEecccCCceeeeccceEEEEeCCCCcEEEEEEeehhccchhHHHHHHHHhHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             --------------------------------------------------------------------------------
Q psy3344         420 --------------------------------------------------------------------------------  419 (1282)
Q Consensus       420 --------------------------------------------------------------------------------  419 (1282)
                                                                                                      
T Consensus        81 eEv~alirSlP~eEqPkqiIvtrk~mldpLevhlldfPnI~I~~seL~lpF~~~mki~k~~dlil~ate~qmvlfnlYDd  160 (253)
T d3e9oa1          81 EEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDD  160 (253)
T ss_dssp             HHHHHHHHHSCTTTSCSEEEESSGGGHHHHHHHTTTCTTSEEECBCSCCCGGGGGGSHHHHHHHHHCSSCEEEEEETTTT
T ss_pred             HHHHHHHHhCCHHHCCceEEEehhhhhchHHHhhccCCCeeEecccccccHHHHhhhHHHhhhhhccCCCcEEEEEhhhh
Confidence                                                                                            


Q ss_pred             ---------HHHHHHHHHHhcccCcccceeeccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHHhcccCCcccccc
Q psy3344         420 ---------AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASL  490 (1282)
Q Consensus       420 ---------AFsRLiLILRal~vn~~rtk~IL~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~dY~kknnVnvssL  490 (1282)
                               |||||||||||||||++|||+||+||+++++++||+||+|||+|||+||++||||||+|||||||||++||
T Consensus       161 WL~~iS~yTaFsRliLiLR~l~vn~~~~k~il~p~~~~~~~~~hlWPsltd~eWi~vEi~LkdLIl~dy~kk~nV~~~sL  240 (253)
T d3e9oa1         161 WLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISAL  240 (253)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGS
T ss_pred             hhcccchHHHHHHHHHHHhhcccCHHHhhHhccCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCchhc
Confidence                     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhccc
Q psy3344         491 TQSEIRDIILGME  503 (1282)
Q Consensus       491 TQsEIRDIILG~e  503 (1282)
                      |||||||||||++
T Consensus       241 TqsEirDiILGq~  253 (253)
T d3e9oa1         241 TQTEIKDIILGQN  253 (253)
T ss_dssp             CHHHHHHHHHTCC
T ss_pred             CHHHHHHhhcCCC
Confidence            9999999999986
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure