Psyllid ID: psy3348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MFSGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPLPSLPHDAHSHSESPPNSEHYYD
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccEEEEEEEEccccccEEEEEEHHHHHHccccccEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccEEEEEEEEccHHHHHHHHHEEHHHHHccccccEEEEEccccEEEEEEEEccccEcccHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfsgnqawdqrfsidldksreleIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFlnpmisrkpkLQRQRKIFKQqgknfpranqmniNVATWGRLlkrsapsiqnnrrplpslphdahshsesppnsehyyd
Flexible Loop (DISEMBL)
mfsgnqawdqrfsidldksrelEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQRKIFKqqgknfpranqmNINVATWGRLLKRSAPSIQNNrrplpslphdahshsesppnsehyyd
Low Complexity Region (SEG)
MFSGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPLPSLPHDAhshsesppnsehYYD
Disordered region (IsUnstruct)
**********RFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMIS***********************QMNINVATWGRLL************************************
Disordered Region (DISOPRED)
*****QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMI***************************INVATWGRLL************************************
Disordered Region (DISEMBL)
MFSGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRK**********KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPLPSL*******************
Disordered Region (DISPRO)
*****QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPS******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFSGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPLPSLPHDAHSHSESPPNSEHYYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
A1Z7T0	1190	Serine/threonine-protein	no	N/A	0.761	0.094	0.858	2e-53
A7MBL8	977	Serine/threonine-protein	yes	N/A	0.925	0.139	0.642	2e-49
O08874	985	Serine/threonine-protein	yes	N/A	0.952	0.142	0.614	2e-48
Q8BWW9	983	Serine/threonine-protein	yes	N/A	0.952	0.142	0.608	1e-47
Q16513	984	Serine/threonine-protein	yes	N/A	0.802	0.119	0.689	4e-47
P70268	946	Serine/threonine-protein	no	N/A	0.775	0.120	0.608	1e-36
Q63433	946	Serine/threonine-protein	no	N/A	0.775	0.120	0.591	6e-36
A1A4I4	944	Serine/threonine-protein	no	N/A	0.775	0.120	0.591	7e-36
Q16512	942	Serine/threonine-protein	no	N/A	0.775	0.121	0.591	8e-36
Q6P5Z2	889	Serine/threonine-protein	no	N/A	0.843	0.139	0.530	2e-34

>sp|A1Z7T0|PKN_DROME Serine/threonine-protein kinase N OS=Drosophila melanogaster GN=Pkn PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 105/113 (92%), Gaps = 1/113 (0%)

Query: 6   QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
           QAWDQRFSIDLD+SRELEIGVYWRDWRSLC VK LRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 459 QAWDQRFSIDLDRSRELEIGVYWRDWRSLCAVKVLRLEEFIDDVRHGMALQLEPQGLLFA 518

Query: 66  EIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPS 117
           E+KFLNPMIS+KPKL+RQR IF +QQ KN  RA QMNINVATWGRLLKR+AP+
Sbjct: 519 EVKFLNPMISQKPKLRRQRMIFNRQQAKNISRAKQMNINVATWGRLLKRNAPN 571

Pkc-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. May play a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion and transcription activation signaling processes (By similarity). Plays a role in regulating Rho-mediated dorsal closure during embryogenesis.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 3

>sp|A7MBL8|PKN2_DANRE Serine/threonine-protein kinase N2 OS=Danio rerio GN=pkn2 PE=2 SV=1

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 109/137 (79%), Gaps = 1/137 (0%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
            NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG L
Sbjct: 408 SNQSWDQKFTLELDRSRELEIAVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTL 467

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNR 122
           FAE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ PS+  + 
Sbjct: 468 FAEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPSVNTSF 527

Query: 123 RPLPSLPHDAHSHSESP 139
            P  +    A SH  +P
Sbjct: 528 SPQAADLGSAMSHETAP 544

Pkc-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. May play a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion and transcription activation signaling processes.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|O08874|PKN2_RAT Serine/threonine-protein kinase N2 OS=Rattus norvegicus GN=Pkn2 PE=1 SV=2

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 119/148 (80%), Gaps = 8/148 (5%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
            NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGMAL LEPQG L
Sbjct: 414 SNQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMALYLEPQGTL 473

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNN- 121
           FAE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++ 
Sbjct: 474 FAEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSG 533

Query: 122 ----RRPLP-SLP-HDAHSHSESPPNSE 143
               + P+P ++P  DA +   +PP S+
Sbjct: 534 TFSPQTPVPATVPVVDARTPELAPPASD 561

PKC-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. Plays a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion, tumor cell invasion and transcription activation signaling processes. Phosphorylates CTTN in hyaluronan-induced astrocytes and hence decreases CTTN ability to associates with filamentous actin. Phosphorylates HDAC5, therefore lead to impair HDAC5 import. Direct RhoA target required for the regulation of the maturation of primordial junctions into apical junction formation in bronchial epithelial cells. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Stimulates FYN kinase activity that is required for establishment of skin cell-cell adhesion during keratinocytes differentiation. Regulates epithelial bladder cells speed and direction of movement during cell migration and tumor cell invasion. Inhibits Akt pro-survival-induced kinase activity. Mediates Rho protein-induced transcriptional activation via the c-fos serum response factor (SRF).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q8BWW9|PKN2_MOUSE Serine/threonine-protein kinase N2 OS=Mus musculus GN=Pkn2 PE=1 SV=3

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 117/148 (79%), Gaps = 8/148 (5%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
            NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG L
Sbjct: 412 SNQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTL 471

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNN- 121
           FAE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++ 
Sbjct: 472 FAEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSG 531

Query: 122 ----RRPLP-SLP-HDAHSHSESPPNSE 143
               + P+P ++P  DA     +PP S+
Sbjct: 532 TFSPQTPVPATVPVVDARIPDLAPPASD 559

PKC-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. Plays a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion, tumor cell invasion and transcription activation signaling processes. Phosphorylates CTTN in hyaluronan-induced astrocytes and hence decreases CTTN ability to associates with filamentous actin. Phosphorylates HDAC5, therefore lead to impair HDAC5 import. Direct RhoA target required for the regulation of the maturation of primordial junctions into apical junction formation in bronchial epithelial cells. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Stimulates FYN kinase activity that is required for establishment of skin cell-cell adhesion during keratinocytes differentiation. Regulates epithelial bladder cells speed and direction of movement during cell migration and tumor cell invasion. Inhibits Akt pro-survival-induced kinase activity. Mediates Rho protein-induced transcriptional activation via the c-fos serum response factor (SRF).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q16513|PKN2_HUMAN Serine/threonine-protein kinase N2 OS=Homo sapiens GN=PKN2 PE=1 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 82/119 (68%), Positives = 103/119 (86%), Gaps = 1/119 (0%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
            NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG L
Sbjct: 413 SNQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTL 472

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNN 121
           FAE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++
Sbjct: 473 FAEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHS 531

PKC-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. Plays a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion, tumor cell invasion and transcription activation signaling processes. Phosphorylates CTTN in hyaluronan-induced astrocytes and hence decreases CTTN ability to associates with filamentous actin. Phosphorylates HDAC5, therefore lead to impair HDAC5 import. Direct RhoA target required for the regulation of the maturation of primordial junctions into apical junction formation in bronchial epithelial cells. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Stimulates FYN kinase activity that is required for establishment of skin cell-cell adhesion during keratinocytes differentiation. Regulates epithelial bladder cells speed and direction of movement during cell migration and tumor cell invasion. Inhibits Akt pro-survival-induced kinase activity. Mediates Rho protein-induced transcriptional activation via the c-fos serum response factor (SRF). Phosphorylates HCV NS5B leading to stimulation of HCV RNA replication.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|P70268|PKN1_MOUSE Serine/threonine-protein kinase N1 OS=Mus musculus GN=Pkn1 PE=1 SV=3

 Score =  151 bits (381), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
           G  AWDQ F+++L+++RELE+ V+WRD R LC +KFL+LE+F+D+ RH + L +EPQG L
Sbjct: 414 GPNAWDQSFTLELERARELELAVFWRDQRGLCALKFLKLEDFLDNERHEVQLDMEPQGCL 473

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPS 117
            AE+ F NP+I R P+LQRQ+KIF KQQGK F RA QMNI+VATW RLL+R  PS
Sbjct: 474 VAEVTFRNPIIERIPRLQRQKKIFSKQQGKAFQRARQMNIDVATWVRLLRRLIPS 528

PKC-related serine/threonine-protein kinase involved in various processes such as regulation of the intermediate filaments of the actin cytoskeleton, cell migration, tumor cell invasion and transcription regulation. Regulates the cytoskeletal network by phosphorylating proteins such as VIM and neurofilament proteins NEFH, NEFL and NEFM, leading to inhibit their polymerization. Phosphorylates 'Ser-575', 'Ser-637' and 'Ser-669' of MAPT/Tau, lowering its ability to bind to microtubules, resulting in disruption of tubulin assembly. Acts as a key coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-11' of histone H3 (H3T11ph), a specific tag for epigenetic transcriptional activation that promotes demethylation of histone H3 'Lys-9' (H3K9me) by KDM4C/JMJD2C. Phosphorylates HDAC5, HDAC7 and HDAC9, leading to impair their import in the nucleus. Phosphorylates 'Thr-38' of PPP1R14A, 'Ser-159', 'Ser-163' and 'Ser-170', and GFAP. Able to phosphorylate RPS6 in vitro.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q63433|PKN1_RAT Serine/threonine-protein kinase N1 OS=Rattus norvegicus GN=Pkn1 PE=1 SV=2

 Score =  149 bits (376), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
           G  AWDQ F+++L+++RELE+ V+WRD R LC +KFL+LE+F+D+ RH + L +EPQG L
Sbjct: 414 GPNAWDQSFTLELERARELELAVFWRDQRGLCALKFLKLEDFLDNERHEVQLDMEPQGCL 473

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPS 117
            AE+ F NP+I R P+LQRQ+KIF KQQG+ F RA QMNI+VATW RLL+R  P+
Sbjct: 474 VAEVTFRNPIIERIPRLQRQKKIFSKQQGQTFQRARQMNIDVATWVRLLRRLIPN 528

PKC-related serine/threonine-protein kinase involved in various processes such as regulation of the intermediate filaments of the actin cytoskeleton, cell migration, tumor cell invasion and transcription regulation. Regulates the cytoskeletal network by phosphorylating proteins such as VIM and neurofilament proteins NEFH, NEFL and NEFM, leading to inhibit their polymerization. Phosphorylates 'Ser-575', 'Ser-637' and 'Ser-669' of MAPT/Tau, lowering its ability to bind to microtubules, resulting in disruption of tubulin assembly. Acts as a key coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-11' of histone H3 (H3T11ph), a specific tag for epigenetic transcriptional activation that promotes demethylation of histone H3 'Lys-9' (H3K9me) by KDM4C/JMJD2C. Phosphorylates HDAC5, HDAC7 and HDAC9, leading to impair their import in the nucleus. Phosphorylates 'Thr-38' of PPP1R14A, 'Ser-159', 'Ser-163' and 'Ser-170', and GFAP. Able to phosphorylate RPS6 in vitro.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|A1A4I4|PKN1_BOVIN Serine/threonine-protein kinase N1 OS=Bos taurus GN=PKN1 PE=2 SV=1

 Score =  149 bits (375), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
           G  AWDQ F+++L+++RELE+ V+WRD R LC +KFL+LE+F+D+ RH + L +EPQG L
Sbjct: 412 GPNAWDQSFTLELERARELELAVFWRDQRGLCALKFLKLEDFLDNERHEVQLDMEPQGCL 471

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPS 117
            AE+ F NP+I R P+L+RQ+KIF KQQGK F RA QMNI+VATW RLL+R  P+
Sbjct: 472 VAEVTFRNPVIERIPRLRRQKKIFSKQQGKAFQRARQMNIDVATWVRLLRRLIPN 526

PKC-related serine/threonine-protein kinase involved in various processes such as regulation of the intermediate filaments of the actin cytoskeleton, cell migration, tumor cell invasion and transcription regulation. Regulates the cytoskeletal network by phosphorylating proteins such as VIM and neurofilament proteins NEFH, NEFL and NEFM, leading to inhibit their polymerization. Phosphorylates 'Ser-575', 'Ser-637' and 'Ser-669' of MAPT/Tau, lowering its ability to bind to microtubules, resulting in disruption of tubulin assembly. Acts as a key coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-11' of histone H3 (H3T11ph), a specific tag for epigenetic transcriptional activation that promotes demethylation of histone H3 'Lys-9' (H3K9me) by KDM4C/JMJD2C. Phosphorylates HDAC5, HDAC7 and HDAC9, leading to impair their import in the nucleus. Phosphorylates 'Thr-38' of PPP1R14A, 'Ser-159', 'Ser-163' and 'Ser-170', and GFAP. Able to phosphorylate RPS6 in vitro.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q16512|PKN1_HUMAN Serine/threonine-protein kinase N1 OS=Homo sapiens GN=PKN1 PE=1 SV=2

 Score =  149 bits (375), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 4   GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
           G  AWDQ F+++L+++RELE+ V+WRD R LC +KFL+LE+F+D+ RH + L +EPQG L
Sbjct: 411 GPNAWDQSFTLELERARELELAVFWRDQRGLCALKFLKLEDFLDNERHEVQLDMEPQGCL 470

Query: 64  FAEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPS 117
            AE+ F NP+I R P+L+RQ+KIF KQQGK F RA QMNI+VATW RLL+R  P+
Sbjct: 471 VAEVTFRNPVIERIPRLRRQKKIFSKQQGKAFQRARQMNIDVATWVRLLRRLIPN 525

PKC-related serine/threonine-protein kinase involved in various processes such as regulation of the intermediate filaments of the actin cytoskeleton, cell migration, tumor cell invasion and transcription regulation. Regulates the cytoskeletal network by phosphorylating proteins such as VIM and neurofilament proteins NEFH, NEFL and NEFM, leading to inhibit their polymerization. Phosphorylates 'Ser-575', 'Ser-637' and 'Ser-669' of MAPT/Tau, lowering its ability to bind to microtubules, resulting in disruption of tubulin assembly. Acts as a key coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-11' of histone H3 (H3T11ph), a specific tag for epigenetic transcriptional activation that promotes demethylation of histone H3 'Lys-9' (H3K9me) by KDM4C/JMJD2C. Phosphorylates HDAC5, HDAC7 and HDAC9, leading to impair their import in the nucleus. Phosphorylates 'Thr-38' of PPP1R14A, 'Ser-159', 'Ser-163' and 'Ser-170' of MARCKS, and GFAP. Able to phosphorylate RPS6 in vitro.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q6P5Z2|PKN3_HUMAN Serine/threonine-protein kinase N3 OS=Homo sapiens GN=PKN3 PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 97/130 (74%), Gaps = 6/130 (4%)

Query: 6   QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
           Q+WDQ F I L+++RELEIGV+WRDWR LCGV FLRLE+F+D+  H ++L L PQGLLFA
Sbjct: 352 QSWDQTFVIPLERARELEIGVHWRDWRQLCGVAFLRLEDFLDNACHQLSLSLVPQGLLFA 411

Query: 66  EIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKR-----SAPSIQ 119
           ++ F +P+I R+P+LQRQ +IF K++G++F RA+QMN+ +A WGRL+       S+PS  
Sbjct: 412 QVTFCDPVIERRPRLQRQERIFSKRRGQDFLRASQMNLGMAAWGRLVMNLLPPCSSPSTI 471

Query: 120 NNRRPLPSLP 129
           +  +  P  P
Sbjct: 472 SPPKGCPRTP 481

Contributes to invasiveness in malignant prostate cancer.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
242022370	1059	conserved hypothetical protein [Pediculu	0.802	0.111	0.923	2e-60
340716554	1712	PREDICTED: hypothetical protein LOC10064	0.843	0.072	0.823	2e-60
350404415	1689	PREDICTED: hypothetical protein LOC10074	0.843	0.073	0.823	2e-60
383860305	1758	PREDICTED: serine/threonine-protein kina	0.843	0.070	0.823	2e-60
307177860	1747	Serine/threonine-protein kinase N2 [Camp	0.843	0.070	0.830	3e-60
345488814	1831	PREDICTED: hypothetical protein LOC10011	0.850	0.068	0.838	6e-60
307197221	161	Serine/threonine-protein kinase N2 [Harp	0.877	0.801	0.808	2e-59
328777943	1556	PREDICTED: hypothetical protein LOC72592	0.843	0.079	0.817	4e-59
380014132	1775	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.843	0.069	0.817	7e-59
328714738	1122	PREDICTED: serine/threonine-protein kina	0.789	0.103	0.905	3e-58

>gi|242022370|ref|XP_002431613.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516921|gb|EEB18875.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/118 (92%), Positives = 116/118 (98%)

Query: 6   QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
           QAWDQRFSI+LDKSRELE+GVYWRDWRSLC VKFL+LEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 424 QAWDQRFSIELDKSRELELGVYWRDWRSLCAVKFLKLEEFIDDVRHGMALQLEPQGLLFA 483

Query: 66  EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
           EIKFLNPMIS+KPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRS+PSIQN+ R
Sbjct: 484 EIKFLNPMISKKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSSPSIQNSHR 541

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716554|ref|XP_003396762.1| PREDICTED: hypothetical protein LOC100648635 [Bombus terrestris]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 120/136 (88%), Gaps = 12/136 (8%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC +KFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1095 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAIKFLRLEEFIDDVRHGMALQLEPQGLLFA 1154

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPL 125
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRSAPS+ N R   
Sbjct: 1155 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAPSLHNTR--- 1211

Query: 126  PSLPHDAHSHSESPPN 141
                     +SESPP+
Sbjct: 1212 ---------NSESPPS 1218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404415|ref|XP_003487097.1| PREDICTED: hypothetical protein LOC100743934 [Bombus impatiens]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 120/136 (88%), Gaps = 12/136 (8%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC +KFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1072 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAIKFLRLEEFIDDVRHGMALQLEPQGLLFA 1131

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPL 125
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRSAPS+ N R   
Sbjct: 1132 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAPSLHNTR--- 1188

Query: 126  PSLPHDAHSHSESPPN 141
                     +SESPP+
Sbjct: 1189 ---------NSESPPS 1195

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860305|ref|XP_003705631.1| PREDICTED: serine/threonine-protein kinase N-like [Megachile rotundata]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 120/136 (88%), Gaps = 12/136 (8%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC +KFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1141 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAIKFLRLEEFIDDVRHGMALQLEPQGLLFA 1200

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPL 125
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRSAPS+ N R   
Sbjct: 1201 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAPSLHNTR--- 1257

Query: 126  PSLPHDAHSHSESPPN 141
                     +SESPP+
Sbjct: 1258 ---------NSESPPS 1264

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177860|gb|EFN66820.1| Serine/threonine-protein kinase N2 [Camponotus floridanus]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/136 (83%), Positives = 119/136 (87%), Gaps = 12/136 (8%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC VKFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1130 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAVKFLRLEEFIDDVRHGMALQLEPQGLLFA 1189

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPL 125
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRSAPS+ N+R   
Sbjct: 1190 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAPSMHNSR--- 1246

Query: 126  PSLPHDAHSHSESPPN 141
                      SESPP 
Sbjct: 1247 ---------SSESPPT 1253

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488814|ref|XP_001599463.2| PREDICTED: hypothetical protein LOC100114442 [Nasonia vitripennis]

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 114/136 (83%), Positives = 120/136 (88%), Gaps = 11/136 (8%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC VKFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1199 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAVKFLRLEEFIDDVRHGMALQLEPQGLLFA 1258

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRRPL 125
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRSAPS+ NN R  
Sbjct: 1259 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAPSMNNNSRS- 1317

Query: 126  PSLPHDAHSHSESPPN 141
                      SESPP+
Sbjct: 1318 ----------SESPPS 1323

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197221|gb|EFN78540.1| Serine/threonine-protein kinase N2 [Harpegnathos saltator]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/141 (80%), Positives = 122/141 (86%), Gaps = 12/141 (8%)

Query: 3   SGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGL 62
              QAWDQRFSI+LDKSRELEIG+YW+DWRSLC VKFLRLEEFIDD+RHGMALQLEPQGL
Sbjct: 23  CSQQAWDQRFSIELDKSRELEIGIYWKDWRSLCAVKFLRLEEFIDDVRHGMALQLEPQGL 82

Query: 63  LFAEIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNR 122
           LFAEIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRSAPS+ N+R
Sbjct: 83  LFAEIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAPSLHNSR 142

Query: 123 RPLPSLPHDAHSHSESPPNSE 143
                       +SESPP+ E
Sbjct: 143 ------------NSESPPSGE 151

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777943|ref|XP_001121710.2| PREDICTED: hypothetical protein LOC725923 [Apis mellifera]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 121/137 (88%), Gaps = 13/137 (9%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC +KFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1086 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAIKFLRLEEFIDDVRHGMALQLEPQGLLFA 1145

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRS-APSIQNNRRP 124
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRS APS+ N+R  
Sbjct: 1146 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAAPSLHNSR-- 1203

Query: 125  LPSLPHDAHSHSESPPN 141
                      +SESPP+
Sbjct: 1204 ----------NSESPPS 1210

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014132|ref|XP_003691095.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase N-like [Apis florea]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 121/137 (88%), Gaps = 13/137 (9%)

Query: 6    QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
            QAWDQRFSI+LDKSRELEIG+YW+DWRSLC +KFLRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct: 1157 QAWDQRFSIELDKSRELEIGIYWKDWRSLCAIKFLRLEEFIDDVRHGMALQLEPQGLLFA 1216

Query: 66   EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRS-APSIQNNRRP 124
            EIKFLNPMISRKPKLQRQRKIFKQQ KNFPRANQMNINVATWGRLLKRS APS+ N+R  
Sbjct: 1217 EIKFLNPMISRKPKLQRQRKIFKQQVKNFPRANQMNINVATWGRLLKRSAAPSLHNSR-- 1274

Query: 125  LPSLPHDAHSHSESPPN 141
                      +SESPP+
Sbjct: 1275 ----------NSESPPS 1281

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714738|ref|XP_003245438.1| PREDICTED: serine/threonine-protein kinase N2-like isoform 1 [Acyrthosiphon pisum]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/116 (90%), Positives = 112/116 (96%)

Query: 6   QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
           QAWDQRFSIDLDKSRELEIGVYWRDWRSLC +KFLRLEEFIDDIRHGMALQLEPQGLLFA
Sbjct: 462 QAWDQRFSIDLDKSRELEIGVYWRDWRSLCAIKFLRLEEFIDDIRHGMALQLEPQGLLFA 521

Query: 66  EIKFLNPMISRKPKLQRQRKIFKQQGKNFPRANQMNINVATWGRLLKRSAPSIQNN 121
           EIKFLNPMISR+P+L+RQRKIFKQQ KNFPRANQMNIN+A W RLLKRS+PSIQN+
Sbjct: 522 EIKFLNPMISRQPRLRRQRKIFKQQAKNFPRANQMNINIAAWSRLLKRSSPSIQNS 577

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
FB|FBgn0020621	1190	Pkn "Protein kinase related to	0.761	0.094	0.858	2.9e-48
UNIPROTKB|B1AL79	604	PKN2 "Serine/threonine-protein	0.850	0.206	0.666	1.9e-44
RGD|620146	985	Pkn2 "protein kinase N2" [Ratt	0.850	0.126	0.674	7.3e-44
UNIPROTKB|O08874	985	Pkn2 "Serine/threonine-protein	0.850	0.126	0.674	7.3e-44
UNIPROTKB|F1PHU4	845	PKN2 "Uncharacterized protein"	0.850	0.147	0.666	1.2e-43
ZFIN|ZDB-GENE-061013-393	977	zgc:153916 "zgc:153916" [Danio	0.816	0.122	0.694	1.5e-43
UNIPROTKB|F1S4D4	969	PKN2 "Uncharacterized protein"	0.850	0.128	0.666	1.9e-43
UNIPROTKB|F1MFK1	981	PKN2 "Uncharacterized protein"	0.850	0.127	0.666	2e-43
MGI|MGI:109211	983	Pkn2 "protein kinase N2" [Mus	0.850	0.127	0.666	2e-43
UNIPROTKB|F1LPA4	983	Pkn2 "Serine/threonine-protein	0.850	0.127	0.666	2e-43

FB|FBgn0020621 Pkn "Protein kinase related to protein kinase N" [Drosophila melanogaster (taxid:7227)]

 Score = 515 (186.3 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 97/113 (85%), Positives = 105/113 (92%)

Query:     6 QAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFA 65
             QAWDQRFSIDLD+SRELEIGVYWRDWRSLC VK LRLEEFIDD+RHGMALQLEPQGLLFA
Sbjct:   459 QAWDQRFSIDLDRSRELEIGVYWRDWRSLCAVKVLRLEEFIDDVRHGMALQLEPQGLLFA 518

Query:    66 EIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPS 117
             E+KFLNPMIS+KPKL+RQR IF +QQ KN  RA QMNINVATWGRLLKR+AP+
Sbjct:   519 EVKFLNPMISQKPKLRRQRMIFNRQQAKNISRAKQMNINVATWGRLLKRNAPN 571

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;NAS

GO:0006468 "protein phosphorylation" evidence=ISS;NAS

GO:0004697 "protein kinase C activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007472 "wing disc morphogenesis" evidence=IMP

UNIPROTKB|B1AL79 PKN2 "Serine/threonine-protein kinase N2" [Homo sapiens (taxid:9606)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   414 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 473

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   474 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 533

Query:   124 PLPSLP 129
               P  P
Sbjct:   534 FSPQAP 539

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

RGD|620146 Pkn2 "protein kinase N2" [Rattus norvegicus (taxid:10116)]

 Score = 472 (171.2 bits), Expect = 7.3e-44, P = 7.3e-44
 Identities = 85/126 (67%), Positives = 106/126 (84%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGMAL LEPQG LF
Sbjct:   415 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMALYLEPQGTLF 474

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   475 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 534

Query:   124 PLPSLP 129
               P  P
Sbjct:   535 FSPQTP 540

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISO;ISS;IDA

GO:0004697 "protein kinase C activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0010631 "epithelial cell migration" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISO;ISS

GO:0030496 "midbody" evidence=ISO;ISS

GO:0032154 "cleavage furrow" evidence=ISO;ISS

GO:0042826 "histone deacetylase binding" evidence=ISO;ISS

GO:0043296 "apical junction complex" evidence=ISO;ISS

GO:0043297 "apical junction assembly" evidence=ISO;ISS

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISO;ISS

GO:2000145 "regulation of cell motility" evidence=ISO;ISS

UNIPROTKB|O08874 Pkn2 "Serine/threonine-protein kinase N2" [Rattus norvegicus (taxid:10116)]

 Score = 472 (171.2 bits), Expect = 7.3e-44, P = 7.3e-44
 Identities = 85/126 (67%), Positives = 106/126 (84%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGMAL LEPQG LF
Sbjct:   415 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMALYLEPQGTLF 474

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   475 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 534

Query:   124 PLPSLP 129
               P  P
Sbjct:   535 FSPQTP 540

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PHU4 PKN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 468 (169.8 bits), Expect = 1.2e-43, P = 1.2e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   275 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 334

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   335 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 394

Query:   124 PLPSLP 129
               P  P
Sbjct:   395 FSPQAP 400

GO:2000145 "regulation of cell motility" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0043297 "apical junction assembly" evidence=IEA

GO:0043296 "apical junction complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010631 "epithelial cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-061013-393 zgc:153916 "zgc:153916" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 1.5e-43, P = 1.5e-43
 Identities = 84/121 (69%), Positives = 103/121 (85%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   409 NQSWDQKFTLELDRSRELEIAVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 468

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ PS+  +  
Sbjct:   469 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPSVNTSFS 528

Query:   124 P 124
             P
Sbjct:   529 P 529

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004697 "protein kinase C activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

UNIPROTKB|F1S4D4 PKN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 468 (169.8 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   399 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 458

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   459 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 518

Query:   124 PLPSLP 129
               P  P
Sbjct:   519 FSPQAP 524

GO:2000145 "regulation of cell motility" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0043297 "apical junction assembly" evidence=IEA

GO:0043296 "apical junction complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010631 "epithelial cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MFK1 PKN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 2.0e-43, P = 2.0e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   413 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 472

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   473 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 532

Query:   124 PLPSLP 129
               P  P
Sbjct:   533 FSPQAP 538

GO:2000145 "regulation of cell motility" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0043297 "apical junction assembly" evidence=IEA

GO:0043296 "apical junction complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010631 "epithelial cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:109211 Pkn2 "protein kinase N2" [Mus musculus (taxid:10090)]

 Score = 468 (169.8 bits), Expect = 2.0e-43, P = 2.0e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   413 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 472

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   473 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 532

Query:   124 PLPSLP 129
               P  P
Sbjct:   533 FSPQTP 538

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004697 "protein kinase C activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0010631 "epithelial cell migration" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030496 "midbody" evidence=ISO

GO:0032154 "cleavage furrow" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043296 "apical junction complex" evidence=ISO;IDA

GO:0043297 "apical junction assembly" evidence=ISO;IDA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISO

GO:2000145 "regulation of cell motility" evidence=ISO

UNIPROTKB|F1LPA4 Pkn2 "Serine/threonine-protein kinase N2" [Rattus norvegicus (taxid:10116)]

 Score = 468 (169.8 bits), Expect = 2.0e-43, P = 2.0e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64
             NQ+WDQ+F+++LD+SRELEI VYWRDWRSLC VKFLRLE+F+D+ RHGM L LEPQG LF
Sbjct:   413 NQSWDQKFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLF 472

Query:    65 AEIKFLNPMISRKPKLQRQRKIF-KQQGKNFPRANQMNINVATWGRLLKRSAPSIQNNRR 123
             AE+ F NP+I R+PKLQRQ+KIF KQQGK F RA QMNIN+ATWGRL++R+ P++ ++  
Sbjct:   473 AEVTFFNPVIERRPKLQRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGT 532

Query:   124 PLPSLP 129
               P  P
Sbjct:   533 FSPQTP 538

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0010631 "epithelial cell migration" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0043296 "apical junction complex" evidence=IEA

GO:0043297 "apical junction assembly" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA

GO:2000145 "regulation of cell motility" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7MBL8	PKN2_DANRE	2, ., 7, ., 1, 1, ., 1, 3	0.6423	0.9251	0.1392	yes	N/A
O08874	PKN2_RAT	2, ., 7, ., 1, 1, ., 1, 3	0.6148	0.9523	0.1421	yes	N/A
Q16513	PKN2_HUMAN	2, ., 7, ., 1, 1, ., 1, 3	0.6890	0.8027	0.1199	yes	N/A
Q8BWW9	PKN2_MOUSE	2, ., 7, ., 1, 1, ., 1, 3	0.6081	0.9523	0.1424	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
cd08687	98	cd08687, C2_PKN-like, C2 domain in Protein kinase	6e-28
cd08689	109	cd08689, C2_fungal_Pkc1p, C2 domain found in prote	0.003

>gnl|CDD|176069 cd08687, C2_PKN-like, C2 domain in Protein kinase C-like (PKN) proteins

 Score = 99.0 bits (246), Expect = 6e-28
 Identities = 34/61 (55%), Positives = 44/61 (72%)

Query: 4  GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
           NQAWDQ F+++L++SRELEI VYWRDWRSLC VKFL+LE+   +++  M  QL     L
Sbjct: 31 SNQAWDQSFTLELERSRELEIAVYWRDWRSLCAVKFLKLEDERHEVQLDMEPQLCLVAEL 90

Query: 64 F 64
           
Sbjct: 91 T 91

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 98

>gnl|CDD|176071 cd08689, C2_fungal_Pkc1p, C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 3  SGNQAWDQRFSIDLDKSRELEIGVYWRDWRSL--CGVKFLRLEEFIDDIR 50
          S N  W++ F I ++K+ E E+ VY +        G+ +LRL +  ++IR
Sbjct: 42 SRNDRWNEDFEIPVEKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAEEIR 91

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	100.0
KOG0694|consensus	694		99.7
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	98.75
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	97.99
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	97.96
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	97.89
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	97.8
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	97.76
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	97.75
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	97.7
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	97.58
KOG1452|consensus	442		97.48
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	97.36
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	97.33
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	97.17
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	97.14
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	97.03
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	97.0
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	96.97
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	96.9
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	96.84
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	96.73
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	96.67
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	96.59
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	96.45
cd00030	102	C2 C2 domain. The C2 domain was first identified i	96.38
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	96.38
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	96.24
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	96.21
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	96.17
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	96.16
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	95.91
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	95.69
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	95.65
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	95.32
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	95.31
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	94.95
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	94.81
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	94.6
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	94.39
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	94.21
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	94.0
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	93.93
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	93.8
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	93.09
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	93.06
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	92.83
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	92.79
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	92.73
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	92.62
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	92.53
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	91.69
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	90.64
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	90.63
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	90.37
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	89.9
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	89.04
PLN03008	868	Phospholipase D delta	88.47
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	88.21
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	87.86
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	87.74
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	87.72
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	87.38
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	86.58
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	86.33
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	86.08
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	85.81
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	85.57
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	85.2
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	85.02
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	84.84
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	81.28
KOG0694|consensus	694		81.05
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	80.2

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=100.00  E-value=4.9e-38  Score=233.37  Aligned_cols=63  Identities=63%  Similarity=1.182  Sum_probs=61.5

Q ss_pred             cccccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcccCcceeeecccceeEEEEEEe
Q psy3348           3 SGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKF   69 (147)
Q Consensus         3 ~s~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF   69 (147)
                      +|+|||||+|+|+|||||||||+|||||||||||++||||||    .+|+++++|||||.||+||||
T Consensus        30 ~s~q~WDQ~Fti~LdRsRELEI~VywrD~RslCav~~lrLEd----~~~~~~~~lepqg~l~~ev~f   92 (98)
T cd08687          30 KSNQAWDQSFTLELERSRELEIAVYWRDWRSLCAVKFLKLED----ERHEVQLDMEPQLCLVAELTF   92 (98)
T ss_pred             cccccccceeEEEeecccEEEEEEEEecchhhhhheeeEhhh----hcccceeccccccEEEEEEEe
Confidence            689999999999999999999999999999999999999999    588999999999999999999

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG0694|consensus

Probab=99.70  E-value=2.8e-18  Score=159.47  Aligned_cols=115  Identities=34%  Similarity=0.574  Sum_probs=108.9

Q ss_pred             ccccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcccCcceeeecccceeEEEEEEeeCCccCCCchhhHH
Q psy3348           4 GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQ   83 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF~nPvieR~pkLqRQ   83 (147)
                      ...+|||+|...| ++|++|+.|+|+|++++|+.++++++++++|.      ++||||.+++ ++|.+|  .|.+++++|
T Consensus       170 t~Cs~C~kFi~gL-~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~------n~e~q~~~~~-~~~~~P--hrf~~~~~q  239 (694)
T KOG0694|consen  170 TFCSWCQKFIWGL-RKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNL------NSEPQGFLFE-FTFRNP--HRFVKLNRQ  239 (694)
T ss_pred             chhhhhhhheecc-CCCceEEeeeeehHhhhhHHHHHHhccCcCcc------CcCCcccccc-ccccCC--Ccchhhhcc
Confidence            4568999999999 99999999999999999999999999999998      8999999999 999999  899999999


Q ss_pred             HHHH-HhhCCCCCCcccccchHhhHHH-----HHhhhCCCCccCCCCCCCC
Q psy3348          84 RKIF-KQQGKNFPRANQMNINVATWGR-----LLKRSAPSIQNNRRPLPSL  128 (147)
Q Consensus        84 kriF-k~kGk~f~Ra~qmninvatW~R-----Ll~~~~p~~~~~~~~~~~~  128 (147)
                      +++| ++.|+.+.|..+++++..+|++     +.++..|.|+.+.++++..
T Consensus       240 ~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~t~~~~~  290 (694)
T KOG0694|consen  240 RPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGSRTFSPEI  290 (694)
T ss_pred             CccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCCCchhhhhhh
Confidence            9999 8999999999999999999999     8999999998888877744

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=98.75  E-value=3.1e-08  Score=71.74  Aligned_cols=66  Identities=23%  Similarity=0.483  Sum_probs=59.3

Q ss_pred             cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhc--ccCcceeeecccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFID--DIRHGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLD--n~~h~~~l~LEPQG~LfaevtF~   70 (147)
                      ...||+.|++.+...+.|+|.||.+|.   ..++|...+.|.++++  ...+..+++|+|+|.|++++++.
T Consensus        59 ~P~Wne~f~~~v~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G~l~l~~~~~  129 (132)
T cd04014          59 SPVWNEEFTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQGKLHVKIELK  129 (132)
T ss_pred             CCCcceeEEEEcCCCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCcEEEEEEEEe
Confidence            467999999999999999999987654   4689999999999999  67799999999999999999874

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=97.99  E-value=2.7e-05  Score=54.60  Aligned_cols=67  Identities=27%  Similarity=0.385  Sum_probs=57.5

Q ss_pred             ccccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc-eeEEEEEEee
Q psy3348           4 GNQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ-GLLFAEIKFL   70 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ-G~LfaevtF~   70 (147)
                      ....|++.|.+++..  .+.|+|.||-+|.   ..+.|..-+.|.++..+..+..+++|+|- |.|+++++|.
T Consensus        43 ~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~  115 (116)
T cd08376          43 LNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT  115 (116)
T ss_pred             CCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence            356799999999855  6899999997665   36678888999999999999999999988 9999999884

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=97.96  E-value=3.7e-05  Score=54.67  Aligned_cols=67  Identities=24%  Similarity=0.455  Sum_probs=55.6

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcc---cCcceeeecccceeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDD---IRHGMALQLEPQGLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn---~~h~~~l~LEPQG~LfaevtF~n   71 (147)
                      ...|++.|.|.+..  .+.|.|.||-+|.   -.++|...+.|.+....   ..+.++++|+|+|.+++++++.+
T Consensus        48 ~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g~i~l~~~~~~  122 (126)
T cd04043          48 NPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQGRLLLRVSMEG  122 (126)
T ss_pred             CCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCCeEEEEEEEee
Confidence            45799999999987  5889999986654   45789999999887543   46789999999999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=97.89  E-value=3.9e-05  Score=55.80  Aligned_cols=65  Identities=22%  Similarity=0.359  Sum_probs=56.6

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc-------ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP-------QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP-------QG~LfaevtF   69 (147)
                      ..-|++.|.|++.. ++.|+|.||-.|.   ..++|...+.|+++..+.....+++|+|       +|.|++++.|
T Consensus        46 ~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          46 CPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            45799999999976 5999999986554   3689999999999998888899999999       8999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=97.80  E-value=0.00011  Score=52.88  Aligned_cols=69  Identities=25%  Similarity=0.464  Sum_probs=58.4

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecc--------cceeEEEEEEeeCC
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLE--------PQGLLFAEIKFLNP   72 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LE--------PQG~LfaevtF~nP   72 (147)
                      ...|++.|.+++.. +.+|.|.||-+|..   .+.|-..+.|.+++.+.....+++|.        .+|.|++++.|.+|
T Consensus        43 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          43 NPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             CCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            56899999999965 78999999966653   58899999999999987777777776        47999999999988


Q ss_pred             c
Q psy3348          73 M   73 (147)
Q Consensus        73 v   73 (147)
                      -
T Consensus       123 ~  123 (126)
T cd08678         123 A  123 (126)
T ss_pred             c
Confidence            5

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=97.76  E-value=9.7e-05  Score=52.48  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=55.5

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcc-cCcceeeecc--cceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDD-IRHGMALQLE--PQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn-~~h~~~l~LE--PQG~LfaevtF~   70 (147)
                      ...|+|.|.+.+.-  .++|+|.|+-.|.  ....|...+.|.++++. .....+++|+  |+|.|.+++.|.
T Consensus        37 nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i~~~~~~~  109 (111)
T cd04052          37 NPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWK  109 (111)
T ss_pred             CCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEEEEEEEEe
Confidence            45799999998864  5779999986665  57889999999999985 5568899999  999999999885

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=97.75  E-value=0.00012  Score=52.01  Aligned_cols=65  Identities=20%  Similarity=0.363  Sum_probs=55.1

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccc--eeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQ--GLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQ--G~LfaevtF   69 (147)
                      ...||++|.+.+..  ...|+|.||=+|.  ..+.|-..+.|.++..+..+...++|+||  |.|++|+.+
T Consensus        47 nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          47 NPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             CCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            57899999998865  4468999995554  45788889999999999999999999998  999999876

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=97.70  E-value=0.00017  Score=50.34  Aligned_cols=65  Identities=23%  Similarity=0.324  Sum_probs=55.5

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeeccc--ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEP--QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEP--QG~LfaevtF   69 (147)
                      ...|++.|.+.+..  .+.|+|.||-+|.  -.+.|...+.|.+++++..+...++|++  +|.|++++.|
T Consensus        51 ~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          51 NPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            45799999998865  7899999986653  4678889999999999888999999997  9999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=97.58  E-value=0.00027  Score=49.66  Aligned_cols=65  Identities=20%  Similarity=0.386  Sum_probs=54.0

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecCc--ccccceeeehhhhhcccCcceeeecccc----eeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDWR--SLCGVKFLRLEEFIDDIRHGMALQLEPQ----GLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~R--sLCav~flRLEdfLDn~~h~~~l~LEPQ----G~LfaevtF   69 (147)
                      ...|++.|.+++..  .+.|.|.||-+|..  .+.|-..+.|.+++.......+++|++.    |.|+++++|
T Consensus        46 nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          46 HPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             CCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            67899999999965  67899999966654  6788888999999887777888888764    889999887

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>KOG1452|consensus

Probab=97.48  E-value=4.3e-05  Score=68.58  Aligned_cols=73  Identities=26%  Similarity=0.419  Sum_probs=61.3

Q ss_pred             cccccceeeeeecccceeeEEEE-EecC--cccccceeeehhhhhc-ccCcceeeecccceeEEEEEEeeCCc-cCCC
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVY-WRDW--RSLCGVKFLRLEEFID-DIRHGMALQLEPQGLLFAEIKFLNPM-ISRK   77 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~Vy-wrD~--RsLCav~flRLEdfLD-n~~h~~~l~LEPQG~LfaevtF~nPv-ieR~   77 (147)
                      +.+|+.+|.+|+--+..|.+-|| |.+-  -.||..+.|-+-.++- +..|.++|.|||.|.+++.+.|.||. +-|+
T Consensus        98 ~f~w~e~F~~Dvv~~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~lePrgq~~~r~~~~Dp~av~rR  175 (442)
T KOG1452|consen   98 GFAWAEDFKHDVVNIEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDRQSPDRVVALYLEPRGQPPLRLPLADPEAVTRR  175 (442)
T ss_pred             CccchhhceeecccceeeeEEEeecCchhhccccccchhhhhhhhhcCCcceeeeecccCCCCceecccCChHHHhhc
Confidence            46899999999999999999999 4444  4899999776665554 47799999999999999999999997 4443

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=97.36  E-value=0.00066  Score=47.23  Aligned_cols=65  Identities=15%  Similarity=0.089  Sum_probs=49.6

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC-cccccceeeehhhhhcccCcceeeeccc-------ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW-RSLCGVKFLRLEEFIDDIRHGMALQLEP-------QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~-RsLCav~flRLEdfLDn~~h~~~l~LEP-------QG~LfaevtF   69 (147)
                      ...|++.|.+++..    .++|+|.|+-+|. ....+++-+.|.+.........+++|+|       .|.|++++.|
T Consensus        41 ~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          41 NPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             CCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            46799999999877    3677777764432 2335677777777776777889999999       7999999987

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=97.33  E-value=0.0011  Score=47.23  Aligned_cols=66  Identities=23%  Similarity=0.436  Sum_probs=55.2

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeeccc------ceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEP------QGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEP------QG~LfaevtF~   70 (147)
                      ...|+|.|.+.+.. ...|.|.||=+|.-   ...|-..+-|.++.++..+...++|++      .|.|.+.++|.
T Consensus        45 nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          45 NPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             CCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            56899999999876 78899999966553   478999999999999999999999963      37888888874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=97.17  E-value=0.0023  Score=45.90  Aligned_cols=70  Identities=20%  Similarity=0.260  Sum_probs=57.4

Q ss_pred             ccccccceeeeeec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc------cceeEEEEEEee
Q psy3348           4 GNQAWDQRFSIDLD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE------PQGLLFAEIKFL   70 (147)
Q Consensus         4 s~q~WDQ~F~I~Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE------PQG~LfaevtF~   70 (147)
                      ....||+.|.+++.    ..+.|+|.||=.|.   ..+.|-..+-|.+++.+......++|+      .+|.|++++.|.
T Consensus        37 ~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~  116 (127)
T cd08373          37 LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQ  116 (127)
T ss_pred             cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEe
Confidence            35679999999995    46899999995543   256888999999999998888888887      358899999998


Q ss_pred             CCc
Q psy3348          71 NPM   73 (147)
Q Consensus        71 nPv   73 (147)
                      .|-
T Consensus       117 ~~~  119 (127)
T cd08373         117 PPD  119 (127)
T ss_pred             CCC
Confidence            764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=97.14  E-value=0.0016  Score=45.57  Aligned_cols=67  Identities=21%  Similarity=0.409  Sum_probs=53.2

Q ss_pred             ccccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcc-eeeec----ccceeEEEEEEee
Q psy3348           4 GNQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHG-MALQL----EPQGLLFAEIKFL   70 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~-~~l~L----EPQG~LfaevtF~   70 (147)
                      ....|+|.|.+.+.. .+.|.|.||-+|..   .+.|...+.|.++++...+. ....+    .|.|.|.++++|.
T Consensus        48 ~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~  123 (124)
T cd04044          48 SNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF  123 (124)
T ss_pred             CCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence            356899999988865 88999999966543   68999999999999986653 43333    3789999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=97.03  E-value=0.0016  Score=45.47  Aligned_cols=65  Identities=23%  Similarity=0.393  Sum_probs=53.6

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF   69 (147)
                      ...|++.|.+.+..  .+.|+|.||-+|-   -.++|-..+.|.++.++....+.++|+|+|.+-.-+-|
T Consensus        44 ~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          44 NPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             CCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            56899999999865  4789999997653   34899999999999999999999999998876554444

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=97.00  E-value=0.0032  Score=44.45  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             ccccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhh---cccCcceeeeccc---------ceeEEEE
Q psy3348           4 GNQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFI---DDIRHGMALQLEP---------QGLLFAE   66 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfL---Dn~~h~~~l~LEP---------QG~Lfae   66 (147)
                      ....||+.|.+.+..  .+.|+|.||=+|.   -.++|...+.|.+++   ++..+...++|+|         +|.|.++
T Consensus        46 ~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~  125 (128)
T cd04024          46 LNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQ  125 (128)
T ss_pred             cCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEE
Confidence            356799999999974  8899999986654   367899999999998   3445667777764         5788777


Q ss_pred             EE
Q psy3348          67 IK   68 (147)
Q Consensus        67 vt   68 (147)
                      ++
T Consensus       126 ~~  127 (128)
T cd04024         126 FS  127 (128)
T ss_pred             EE
Confidence            65

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=96.97  E-value=0.0029  Score=45.53  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             cccccceeeeeeccc-ceeeEEEEEecC---cccccceeeehhhhhcc-cCcceeeeccc-------ceeEEEEEE
Q psy3348           5 NQAWDQRFSIDLDKS-RELEIGVYWRDW---RSLCGVKFLRLEEFIDD-IRHGMALQLEP-------QGLLFAEIK   68 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs-RELEI~VywrD~---RsLCav~flRLEdfLDn-~~h~~~l~LEP-------QG~Lfaevt   68 (147)
                      ...|++.|.+.+... +.|+|.||-.|.   -.++|...+.++++... .....+++|+|       .|.++++++
T Consensus        45 nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          45 NPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            467999999999765 899999986664   36899999999998864 34788999999       899998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=96.90  E-value=0.0044  Score=43.34  Aligned_cols=66  Identities=23%  Similarity=0.374  Sum_probs=49.4

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec-----ccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL-----EPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L-----EPQG~LfaevtF~   70 (147)
                      ...||+.|.+.+.. .+.|.|.||=+|.   -.+.|...+.|.++.....+-..|..     .++|.+++++.|.
T Consensus        45 nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~~  119 (119)
T cd08377          45 NPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDVI  119 (119)
T ss_pred             CCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEeC
Confidence            56799999999977 7899999985543   25678888899998766554333322     2689999999873

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=96.84  E-value=0.004  Score=44.81  Aligned_cols=67  Identities=19%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             cccccceeeeeeccc-----ceeeEEEEEecC----cccccceeeehhhhh-cccCcceeeecc-------cceeEEEEE
Q psy3348           5 NQAWDQRFSIDLDKS-----RELEIGVYWRDW----RSLCGVKFLRLEEFI-DDIRHGMALQLE-------PQGLLFAEI   67 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs-----RELEI~VywrD~----RsLCav~flRLEdfL-Dn~~h~~~l~LE-------PQG~Lfaev   67 (147)
                      ...||+.|.+.+...     ..|+|.||-.|.    ..+-|-..+.|+++. ++..+..+++|+       ++|-|.+++
T Consensus        44 nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~  123 (127)
T cd04022          44 NPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKV  123 (127)
T ss_pred             CCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEE
Confidence            467999999998743     468999986542    346688889999998 567778888888       478888888


Q ss_pred             EeeC
Q psy3348          68 KFLN   71 (147)
Q Consensus        68 tF~n   71 (147)
                      -|.|
T Consensus       124 ~~~~  127 (127)
T cd04022         124 YITD  127 (127)
T ss_pred             EEcC
Confidence            8765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=96.73  E-value=0.003  Score=44.58  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=47.3

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP   59 (147)
                      ...||+.|++++..    .+.|+|.||-.|.   ..+.|-..+.|.++.....+..+++|||
T Consensus        62 ~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          62 NPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            46799999999976    4689999997654   3678889999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=96.67  E-value=0.0013  Score=50.29  Aligned_cols=48  Identities=35%  Similarity=0.638  Sum_probs=40.4

Q ss_pred             cccccccceeeeeecccceeeEEEEEe--cCcccccceeeehhhhhcccC
Q psy3348           3 SGNQAWDQRFSIDLDKSRELEIGVYWR--DWRSLCGVKFLRLEEFIDDIR   50 (147)
Q Consensus         3 ~s~q~WDQ~F~I~LeRsRELEI~Vywr--D~RsLCav~flRLEdfLDn~~   50 (147)
                      |-...|++.|.|++|++.|+||.||=+  |.--=-|+..+||.|+.+..|
T Consensus        42 srnd~WnE~F~i~Vdk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~Ee~R   91 (109)
T cd08689          42 SRNDRWNEDFEIPVEKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAEEIR   91 (109)
T ss_pred             CCCCcccceEEEEecCCcEEEEEEEeCCCCeecceeeehhhHHHHHHHHH
Confidence            346789999999999999999999977  445556788899999999844

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=96.59  E-value=0.0081  Score=43.13  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             ccccccceeeeeecc-------cceeeEEEEEecC---cccccceeeehhhhh--cccCcceeeeccc
Q psy3348           4 GNQAWDQRFSIDLDK-------SRELEIGVYWRDW---RSLCGVKFLRLEEFI--DDIRHGMALQLEP   59 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR-------sRELEI~VywrD~---RsLCav~flRLEdfL--Dn~~h~~~l~LEP   59 (147)
                      ....||+.|.+++..       .+.|+|.||-+|.   ..+.|-..+-|.++.  ++.....+++|++
T Consensus        42 ~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          42 TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            456899999998855       6789999998875   357889999999998  5666778888875

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=96.45  E-value=0.012  Score=45.01  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=53.3

Q ss_pred             cccccceeeeee-cccceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecc--------cceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDL-DKSRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLE--------PQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~L-eRsRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LE--------PQG~LfaevtF~   70 (147)
                      ...|+|.|.|.+ +-...|+|.|+..|.  ..+.|...+.|+++........+++|+        +.|.|++.+.|.
T Consensus        82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            568999999986 345789999997764  457889999999999887777788875        357999999884

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd00030 C2 C2 domain

Probab=96.38  E-value=0.0088  Score=37.48  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             ccccccceeeeeecc--cceeeEEEEEecCc---ccccceeeehhhhh-cccCcceeee
Q psy3348           4 GNQAWDQRFSIDLDK--SRELEIGVYWRDWR---SLCGVKFLRLEEFI-DDIRHGMALQ   56 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR--sRELEI~VywrD~R---sLCav~flRLEdfL-Dn~~h~~~l~   56 (147)
                      ....|++.|.+++..  ...|+|.||..+..   .+-|...+.|.++. .+..+..+++
T Consensus        43 ~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~  101 (102)
T cd00030          43 LNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLP  101 (102)
T ss_pred             CCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceec
Confidence            457899999999997  99999999998763   67788888888888 4455555444

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=96.38  E-value=0.016  Score=42.18  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=52.2

Q ss_pred             cccccceeeeeeccc--ceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecccc--------eeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDKS--RELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEPQ--------GLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs--RELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEPQ--------G~LfaevtF~n   71 (147)
                      ...|++.|.++....  +.|.|.||=.|..   ..=|...+.|+++........+++|+|.        |.|.+.++|..
T Consensus        45 nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          45 NPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            457999999985443  5688888754432   3556777889998888888899999886        89999999964

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=96.24  E-value=0.0078  Score=46.28  Aligned_cols=56  Identities=21%  Similarity=0.509  Sum_probs=47.7

Q ss_pred             cccccceeeeeecccce-eeEEEEEec--Ccccccceeeehhhhhcc--cCcceeeecccc
Q psy3348           5 NQAWDQRFSIDLDKSRE-LEIGVYWRD--WRSLCGVKFLRLEEFIDD--IRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRE-LEI~VywrD--~RsLCav~flRLEdfLDn--~~h~~~l~LEPQ   60 (147)
                      +..|||.|.+.+++..+ |+|.|+=+|  .-.+.|-.-+-|.+++..  .-.+.+++|+|.
T Consensus        42 nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          42 QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence            67899999999987655 999999888  577899999999999955  445899999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=96.21  E-value=0.024  Score=41.24  Aligned_cols=65  Identities=26%  Similarity=0.392  Sum_probs=51.4

Q ss_pred             cccccceeeeeec--ccceeeEEEEEecC--cccccceeeehhhhhccc-----Ccceeeeccc------ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLD--KSRELEIGVYWRDW--RSLCGVKFLRLEEFIDDI-----RHGMALQLEP------QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~Le--RsRELEI~VywrD~--RsLCav~flRLEdfLDn~-----~h~~~l~LEP------QG~LfaevtF   69 (147)
                      ...||+.|.+.+.  ....|+|.||=+|.  ..++|-..+.|.++..+.     .+..+.+|++      .|-|.+.+.|
T Consensus        40 nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          40 NPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             CCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            5679999999997  47889999997775  578899999999987532     2557778876      4778888777

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=96.17  E-value=0.011  Score=42.06  Aligned_cols=59  Identities=15%  Similarity=0.316  Sum_probs=49.5

Q ss_pred             cccccceeeeeeccc-----ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeE
Q psy3348           5 NQAWDQRFSIDLDKS-----RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL   63 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs-----RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~L   63 (147)
                      ...|++.|.+.+...     +.|.|.||-+|.   -.+-|...+.|.+++.+.....+++|.|.|.=
T Consensus        46 nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~  112 (124)
T cd04049          46 NPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYN  112 (124)
T ss_pred             CCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccceE
Confidence            568999999999886     789999996653   34577888899999999999999999998753

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=96.16  E-value=0.02  Score=40.70  Aligned_cols=56  Identities=16%  Similarity=0.327  Sum_probs=45.2

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+.+..  ...|.|.||-+|.   -.+.|...+.|.++.....+..+.+|+|.
T Consensus        44 nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~  104 (123)
T cd04025          44 YPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD  104 (123)
T ss_pred             CCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCC
Confidence            46799999999977  4679999985553   35788999999999887777888888874

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=95.91  E-value=0.028  Score=40.26  Aligned_cols=66  Identities=17%  Similarity=0.267  Sum_probs=51.1

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccC------cceeeecc-------cceeEEEEE
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR------HGMALQLE-------PQGLLFAEI   67 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~------h~~~l~LE-------PQG~Lfaev   67 (147)
                      ...|++.|.+++.. .+.|.|.||=.|.   ..+.|...+.|.++.....      +.-+.+|+       +.|.|.+++
T Consensus        51 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~  130 (133)
T cd04033          51 NPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYM  130 (133)
T ss_pred             CCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEE
Confidence            46799999999976 7789999996654   2567778889999887533      44666777       579999999


Q ss_pred             Eee
Q psy3348          68 KFL   70 (147)
Q Consensus        68 tF~   70 (147)
                      .|.
T Consensus       131 ~~~  133 (133)
T cd04033         131 AYL  133 (133)
T ss_pred             eeC
Confidence            984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=95.69  E-value=0.042  Score=40.87  Aligned_cols=65  Identities=9%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehh-hhhcccCcceeeeccc------ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLE-EFIDDIRHGMALQLEP------QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLE-dfLDn~~h~~~l~LEP------QG~LfaevtF   69 (147)
                      ...|+|.|.+.+.- ..+|.|.||=.|-   -.+.|-..+.|. .++.++.-..+++|++      -|.+++++.|
T Consensus        46 nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          46 NPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             CCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            67899999999965 5789999997765   246777888896 5667777788888876      4888888876

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=95.65  E-value=0.053  Score=42.50  Aligned_cols=74  Identities=18%  Similarity=0.411  Sum_probs=60.3

Q ss_pred             ccccccceeeeeeccc----------ceeeEEEEEecC--c--ccccceeeehhhhhcccCcceeeecc-----cceeEE
Q psy3348           4 GNQAWDQRFSIDLDKS----------RELEIGVYWRDW--R--SLCGVKFLRLEEFIDDIRHGMALQLE-----PQGLLF   64 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRs----------RELEI~VywrD~--R--sLCav~flRLEdfLDn~~h~~~l~LE-----PQG~Lf   64 (147)
                      .+..|+++|++++.+.          +-|.|+||-+|.  |  .+=|-..+.|+++..+.....+++|.     =.|.|.
T Consensus        52 lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~  131 (155)
T cd08690          52 NSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLE  131 (155)
T ss_pred             CCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEE
Confidence            4568999999999765          459999998874  4  77888999999988875555588876     478999


Q ss_pred             EEEEeeCCccCCC
Q psy3348          65 AEIKFLNPMISRK   77 (147)
Q Consensus        65 aevtF~nPvieR~   77 (147)
                      ++|+-.+|..+.+
T Consensus       132 v~ir~r~p~~~~~  144 (155)
T cd08690         132 VKVRLREPLTGKQ  144 (155)
T ss_pred             EEEEecCCCccce
Confidence            9999999987654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=95.32  E-value=0.06  Score=39.12  Aligned_cols=46  Identities=22%  Similarity=0.406  Sum_probs=38.9

Q ss_pred             cccccceeeeeecccceeeEEEEEecCc---ccccceeeehhhhhcccC
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIR   50 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~R---sLCav~flRLEdfLDn~~   50 (147)
                      ...|++.|.|.+...+.|.|.||=.|.-   .+.|-..+.|.+++.++.
T Consensus        46 ~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~   94 (125)
T cd04021          46 NPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHN   94 (125)
T ss_pred             CCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcC
Confidence            5689999999999999999999955442   578899999999998644

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=95.31  E-value=0.049  Score=38.70  Aligned_cols=61  Identities=30%  Similarity=0.487  Sum_probs=45.6

Q ss_pred             ccccccceeeeeeccc------ceeeEEEEEecC---cccccceeeehhhhhcccC-----cceeeecc-----cceeEE
Q psy3348           4 GNQAWDQRFSIDLDKS------RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR-----HGMALQLE-----PQGLLF   64 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRs------RELEI~VywrD~---RsLCav~flRLEdfLDn~~-----h~~~l~LE-----PQG~Lf   64 (147)
                      ....||+.|.|++...      ..|.|.||-+|.   -.+=|-..+.|.|++....     +..+.+|+     |+|.|+
T Consensus        45 ~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          45 TNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            3568999999999665      789999996554   2355778899999998754     35666776     667665

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=94.95  E-value=0.046  Score=38.71  Aligned_cols=54  Identities=19%  Similarity=0.259  Sum_probs=41.9

Q ss_pred             cccccceeeeeeccc----ceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeecc
Q psy3348           5 NQAWDQRFSIDLDKS----RELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQLE   58 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~LE   58 (147)
                      ...||++|.+++...    +.|+|.|+..|.     ..+-|...+.|.++..++.+..+..|+
T Consensus        65 nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          65 NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            567999999999654    789999998764     246788888999986667776666654

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=94.81  E-value=0.067  Score=37.34  Aligned_cols=57  Identities=25%  Similarity=0.373  Sum_probs=43.5

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecCcccccceeeehhhhhccc--Ccceeeecccce
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDWRSLCGVKFLRLEEFIDDI--RHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~RsLCav~flRLEdfLDn~--~h~~~l~LEPQG   61 (147)
                      ..-||+.|.+.+..  ...|.|.|+=.|.-.+=|-..+.|.+++...  ...-+++|++.|
T Consensus        44 nP~Wne~f~f~v~~~~~~~l~v~v~d~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          44 NPVWEEGFTFLVRNPENQELEIEVKDDKTGKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             CCcccceEEEEeCCCCCCEEEEEEEECCCCCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence            56799999999985  6679999995554344566678899998764  467788888777

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=94.60  E-value=0.088  Score=37.92  Aligned_cols=55  Identities=16%  Similarity=0.238  Sum_probs=42.6

Q ss_pred             ccccccceeeeeecccceeeEEEEEecCc-----ccccceeeehhhhhcccC-cceeeecc
Q psy3348           4 GNQAWDQRFSIDLDKSRELEIGVYWRDWR-----SLCGVKFLRLEEFIDDIR-HGMALQLE   58 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRsRELEI~VywrD~R-----sLCav~flRLEdfLDn~~-h~~~l~LE   58 (147)
                      ....||+.|.|.+.....|.|.||-+|.-     .+.|...+.|.++++... ..-.++|+
T Consensus        44 ~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~  104 (123)
T cd08382          44 LDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLR  104 (123)
T ss_pred             CCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEee
Confidence            35689999999999999999999966542     367888999999998643 24455553

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=94.39  E-value=0.083  Score=39.34  Aligned_cols=57  Identities=19%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             cccccceeeeeeccc-----------------ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348           5 NQAWDQRFSIDLDKS-----------------RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs-----------------RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ...|+|.|.+++...                 ..|+|.||=+|.   -.+.|-..+.|.+++....+..+++|+|+|
T Consensus        46 nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          46 NPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             CCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            567999999998775                 478888885543   355677788899988777788999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=94.21  E-value=0.19  Score=35.24  Aligned_cols=62  Identities=27%  Similarity=0.431  Sum_probs=45.2

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeec-------ccceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQL-------EPQGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~L-------EPQG~LfaevtF   69 (147)
                      ...||++|.+++..  ..-|.|.||-.|.  ..+.|...+.|.++.+..++   ++|       ...|.|++.+.+
T Consensus        55 ~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~~~---~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          55 NPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRH---VPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCceEE---EEecCCCCCCCcceeEEEEEEE
Confidence            56799999999653  3468999996654  57888889999998665433   333       445788888765

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=94.00  E-value=0.21  Score=38.07  Aligned_cols=54  Identities=19%  Similarity=0.374  Sum_probs=40.5

Q ss_pred             ccccccceeeeeecccceeeEEEEEec----------Ccccccceeeeh--hhhhcccCcceeeec
Q psy3348           4 GNQAWDQRFSIDLDKSRELEIGVYWRD----------WRSLCGVKFLRL--EEFIDDIRHGMALQL   57 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRsRELEI~VywrD----------~RsLCav~flRL--EdfLDn~~h~~~l~L   57 (147)
                      ....||+.|.|+|+-++.|-|.||..+          --.+||-+.+.|  +.|-|+.-+..++.|
T Consensus        42 lnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~  107 (118)
T cd08686          42 TEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM  107 (118)
T ss_pred             CCCccceEEEEEeCCCCEEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence            456899999999999999999999752          235796666655  677777555555555

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=93.93  E-value=0.24  Score=37.82  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             ccccccceeeeeec--ccceeeEEEEEecC---cccccceeeehhhhhcc----cCcceeeecccc-------------e
Q psy3348           4 GNQAWDQRFSIDLD--KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD----IRHGMALQLEPQ-------------G   61 (147)
Q Consensus         4 s~q~WDQ~F~I~Le--RsRELEI~VywrD~---RsLCav~flRLEdfLDn----~~h~~~l~LEPQ-------------G   61 (147)
                      ....|||.|.+.+.  ....|.|.|+-+|.   ..+=|-..+.|.++...    .....+++|++.             |
T Consensus        44 ~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g  123 (150)
T cd04019          44 GNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFAS  123 (150)
T ss_pred             CCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccc
Confidence            35689999999984  35689999986664   24567778889998743    345777888854             7


Q ss_pred             eEEEEEEee
Q psy3348          62 LLFAEIKFL   70 (147)
Q Consensus        62 ~LfaevtF~   70 (147)
                      .|.+++.|.
T Consensus       124 ~l~l~i~~~  132 (150)
T cd04019         124 RIHLRLCLD  132 (150)
T ss_pred             cEEEEEEec
Confidence            788888875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=93.80  E-value=0.11  Score=37.71  Aligned_cols=55  Identities=22%  Similarity=0.369  Sum_probs=45.1

Q ss_pred             cccccceeeee-ecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348           5 NQAWDQRFSID-LDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I~-LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP   59 (147)
                      ...||++|.++ +..    .+.|.+.|+-.|.   ..+.|-..+-|.++--+.....+++|+|
T Consensus        62 nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          62 NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            45799999998 554    5678899997764   4578999999999966788999999998

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=93.09  E-value=0.16  Score=36.13  Aligned_cols=53  Identities=25%  Similarity=0.270  Sum_probs=42.1

Q ss_pred             cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec
Q psy3348           5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL   57 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L   57 (147)
                      ...||+.|.+++...    +.|+|.|+=+|.   ..+.|...+.|.++..++.+..+.+|
T Consensus        63 ~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          63 NPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             CCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            457999999998754    589999986654   35788888999999887777777765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=93.06  E-value=0.34  Score=35.04  Aligned_cols=53  Identities=17%  Similarity=0.367  Sum_probs=38.4

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC--------------cccccceeeehhhhhcccCcceeeeccc
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--------------RSLCGVKFLRLEEFIDDIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--------------RsLCav~flRLEdfLDn~~h~~~l~LEP   59 (147)
                      ...|++.|.+.+.. .+.|.|+||=.|.              ..+-|...+.|.++-  ..+.++.+|+|
T Consensus        45 ~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~  112 (127)
T cd04027          45 NPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEK  112 (127)
T ss_pred             CCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECcc
Confidence            45699999998854 4689999986652              345666677777753  45678888887

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=92.83  E-value=0.18  Score=38.66  Aligned_cols=58  Identities=19%  Similarity=0.250  Sum_probs=42.7

Q ss_pred             cccccceeeeeec-----------------ccceeeEEEEEecCc---ccccceeeehhhhhcc-cCcceeeeccccee
Q psy3348           5 NQAWDQRFSIDLD-----------------KSRELEIGVYWRDWR---SLCGVKFLRLEEFIDD-IRHGMALQLEPQGL   62 (147)
Q Consensus         5 ~q~WDQ~F~I~Le-----------------RsRELEI~VywrD~R---sLCav~flRLEdfLDn-~~h~~~l~LEPQG~   62 (147)
                      ...|||.|.+++.                 ....|+|.|+-+|..   .+=|-.-|-|.++... .....+++|+|++.
T Consensus        47 nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~  125 (148)
T cd04010          47 NPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE  125 (148)
T ss_pred             CCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence            4579999999994                 346899999866542   3445555677887766 56788999999874

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=92.79  E-value=0.23  Score=34.81  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeee
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQ   56 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~   56 (147)
                      ...|++.|.+++..    .+.|+|.|+-.|.   ..+.|-..+.|.++.-......+.+
T Consensus        64 ~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~  122 (123)
T cd08521          64 NPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP  122 (123)
T ss_pred             CCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence            46799999999987    5789999986653   3577888888888854444444433

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=92.73  E-value=0.42  Score=37.12  Aligned_cols=67  Identities=9%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             cccccceeeee-ecccceeeEEEEEecC-------cccccceeeehhhhhcccCcceeeec---------------ccce
Q psy3348           5 NQAWDQRFSID-LDKSRELEIGVYWRDW-------RSLCGVKFLRLEEFIDDIRHGMALQL---------------EPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~-LeRsRELEI~VywrD~-------RsLCav~flRLEdfLDn~~h~~~l~L---------------EPQG   61 (147)
                      ..-|++.|.|. +..+.+|+|.||=.|-       .++.|...+-++++...+...-+++|               .+.|
T Consensus        51 nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~  130 (146)
T cd04013          51 TLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESP  130 (146)
T ss_pred             CCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCC
Confidence            45699999997 4457899999985542       37999999999999977665555554               4457


Q ss_pred             eEEEEEEeeC
Q psy3348          62 LLFAEIKFLN   71 (147)
Q Consensus        62 ~LfaevtF~n   71 (147)
                      .|.+.++|.+
T Consensus       131 ~lrik~rf~~  140 (146)
T cd04013         131 SIRIKARYQS  140 (146)
T ss_pred             EEEEEEEEEE
Confidence            8889888864

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=92.62  E-value=0.25  Score=35.04  Aligned_cols=54  Identities=20%  Similarity=0.166  Sum_probs=42.0

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE   58 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE   58 (147)
                      ...||+.|.+.+..    .+.|.|.|+-.|.   ..+.|-..+.|.++..+.....+++||
T Consensus        63 nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          63 NPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            56899999999865    5689999996553   357788888888876667777777776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=92.53  E-value=0.37  Score=36.13  Aligned_cols=55  Identities=22%  Similarity=0.343  Sum_probs=41.6

Q ss_pred             ccccccceeeeeecc-cceeeEEEEEecCc---------ccccceeeehhhhhcccCcceeeecc
Q psy3348           4 GNQAWDQRFSIDLDK-SRELEIGVYWRDWR---------SLCGVKFLRLEEFIDDIRHGMALQLE   58 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR-sRELEI~VywrD~R---------sLCav~flRLEdfLDn~~h~~~l~LE   58 (147)
                      .+..|++.|.|.+.. +..|+|.||=.|.-         .+=|-.-+.|.++..+..+...++|+
T Consensus        46 ~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~  110 (126)
T cd08379          46 SNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL  110 (126)
T ss_pred             CCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence            567899999999854 56899999855542         33455566788888888888888877

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=91.69  E-value=0.8  Score=33.06  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecc---------cceeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLE---------PQGLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LE---------PQG~LfaevtF~n   71 (147)
                      ..-|++.|.+.... .+.|+|.||=+|.  ...+|-..+.|.++.+...  ..++|+         ..|.|.++|.+.|
T Consensus        47 nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          47 SPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDSQTL--RTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCCcCc--eEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence            46799999997744 5679999995542  3556666667766544333  344553         4688888877654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=90.64  E-value=0.56  Score=35.56  Aligned_cols=57  Identities=18%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             cccc-cceeeeeecccceeeEEEEEecC------cccccceeeehhhhhccc---Ccceeeecccce
Q psy3348           5 NQAW-DQRFSIDLDKSRELEIGVYWRDW------RSLCGVKFLRLEEFIDDI---RHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~W-DQ~F~I~LeRsRELEI~VywrD~------RsLCav~flRLEdfLDn~---~h~~~l~LEPQG   61 (147)
                      ...| ++.|.+.+..+..|+|+||.+|-      ..+-|-.-+-|.+++..+   .+..+.+|+.++
T Consensus        57 nP~W~nE~f~f~v~~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~  123 (137)
T cd08691          57 NPVWHREQFVFVGLPTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT  123 (137)
T ss_pred             CCceEceEEEEEcCCCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC
Confidence            5689 99999999999999999997653      246677777899998763   244566777665

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=90.63  E-value=0.41  Score=35.04  Aligned_cols=55  Identities=16%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             cccccceeee-eecc----cceeeEEEEEecC---cccccceeeehhhh-hc-ccCcceeeeccc
Q psy3348           5 NQAWDQRFSI-DLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEF-ID-DIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I-~LeR----sRELEI~VywrD~---RsLCav~flRLEdf-LD-n~~h~~~l~LEP   59 (147)
                      ...||++|.+ .++.    ..-|+|.|+..|.   ..+.|-..+.|.++ +. .+.-.++++|-|
T Consensus        64 nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          64 NPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             CCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            4679999999 4553    2458999998763   56788888888887 32 244666666654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=90.37  E-value=0.65  Score=34.58  Aligned_cols=57  Identities=25%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             cccccceeeeeecc-----cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecccce
Q psy3348           5 NQAWDQRFSIDLDK-----SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-----sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ...|+++|++++.-     ...|.|.||=.|.-   .+.|-..|-|.++..++...++++|++..
T Consensus        50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~  114 (120)
T cd08395          50 SPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI  114 (120)
T ss_pred             CCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence            56899999999852     34588999855532   26778888899999888888899998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=89.90  E-value=0.76  Score=32.93  Aligned_cols=55  Identities=27%  Similarity=0.392  Sum_probs=41.8

Q ss_pred             cccccceeeeeeccc---ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDLDKS---RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs---RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...||+.|.+.+...   +.|+|.||=+|-   -.++|...+.|.+++.. .+..+.+|+.+
T Consensus        62 ~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~  122 (131)
T cd04026          62 NPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ  122 (131)
T ss_pred             CCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence            568999999998754   789999996553   25788889999999854 55666666644

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=89.04  E-value=2  Score=32.03  Aligned_cols=65  Identities=20%  Similarity=0.442  Sum_probs=46.0

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhccc---Cccee--eec--ccceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDI---RHGMA--LQL--EPQGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~---~h~~~--l~L--EPQG~LfaevtF   69 (147)
                      ...||+.|.+.+..  ...|.|+||=+|.   -.+-|-..+.|.+++...   +..+.  +++  -..|-+.++++|
T Consensus        59 nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          59 NPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            46799999998854  5679999996664   256788889999999732   23222  333  334888888876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>PLN03008 Phospholipase D delta

Probab=88.47  E-value=1.3  Score=43.98  Aligned_cols=67  Identities=19%  Similarity=0.346  Sum_probs=53.5

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeec--------ccceeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQL--------EPQGLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~L--------EPQG~LfaevtF~n   71 (147)
                      +..|+|+|.|.+.- +.+|++.||=.|.  ..+=|..++-|++++..+.-..+++|        .+.|.|++++.|..
T Consensus       101 NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~p  178 (868)
T PLN03008        101 EPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTP  178 (868)
T ss_pred             CCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEE
Confidence            56899999999975 8899999984433  46778889999999888765555554        57789999999974

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=88.21  E-value=1.2  Score=31.38  Aligned_cols=44  Identities=23%  Similarity=0.453  Sum_probs=36.2

Q ss_pred             cccc-cceeeeeeccc----ceeeEEEEEecC---cccccceeeehhhhhcc
Q psy3348           5 NQAW-DQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEEFIDD   48 (147)
Q Consensus         5 ~q~W-DQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEdfLDn   48 (147)
                      ...| ++.|.+++...    +.|+|.||=+|.   ..++|-..+-|.+++..
T Consensus        44 nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~   95 (110)
T cd08688          44 NPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLK   95 (110)
T ss_pred             CCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhccc
Confidence            5679 99999998763    689999997765   25789999999999884

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=87.86  E-value=0.9  Score=32.20  Aligned_cols=52  Identities=12%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             cccccceeeee-ecc----cceeeEEEEEecC--cccccceeeehhhhhcccCcceeee
Q psy3348           5 NQAWDQRFSID-LDK----SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQ   56 (147)
Q Consensus         5 ~q~WDQ~F~I~-LeR----sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~   56 (147)
                      ..-||+.|.++ +..    +..|.|.||-+|.  ..++|-..+.|.+++..+.+...+.
T Consensus        64 ~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          64 NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             CCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence            56799999985 433    4679999996653  5789999999999998877766554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=87.74  E-value=0.92  Score=31.80  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             cccccceeeeeecc------cceeeEEEEEecC---cccccceeeehhhhhcccCcce
Q psy3348           5 NQAWDQRFSIDLDK------SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGM   53 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR------sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~   53 (147)
                      ...||+.|.+++..      ...|+|.||=+|.   ..+=|...+.|.++.+..+|++
T Consensus        44 nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~  101 (111)
T cd04011          44 CPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAF  101 (111)
T ss_pred             CCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcc
Confidence            56799999998754      3469999995543   1345677778888888777654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=87.72  E-value=1.5  Score=31.12  Aligned_cols=56  Identities=21%  Similarity=0.328  Sum_probs=42.5

Q ss_pred             ccccccceeeee--ecccceeeEEEEEecCc-------ccccceeeehhhhhcccCcceeeeccc
Q psy3348           4 GNQAWDQRFSID--LDKSRELEIGVYWRDWR-------SLCGVKFLRLEEFIDDIRHGMALQLEP   59 (147)
Q Consensus         4 s~q~WDQ~F~I~--LeRsRELEI~VywrD~R-------sLCav~flRLEdfLDn~~h~~~l~LEP   59 (147)
                      ....|++.|.++  .+....|.|+||=.|..       .+-|-.-+.|.+++........++|.|
T Consensus        50 ~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          50 LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            356799999996  46778899999977641       356677788899998877777777744

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=87.38  E-value=1.4  Score=27.87  Aligned_cols=48  Identities=29%  Similarity=0.494  Sum_probs=35.6

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecCc---ccccceeeehhhhhcccCcc
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHG   52 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~   52 (147)
                      ...||+.|.+.+..  .+.|.|.||-++..   .+=|...+-|.++.+...+.
T Consensus        47 ~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~~   99 (101)
T smart00239       47 NPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE   99 (101)
T ss_pred             CCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcccc
Confidence            67899999999988  89999999976642   34455556677776665543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=86.58  E-value=1.6  Score=30.65  Aligned_cols=54  Identities=24%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             ccccccceeeeee-c----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc
Q psy3348           4 GNQAWDQRFSIDL-D----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE   58 (147)
Q Consensus         4 s~q~WDQ~F~I~L-e----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE   58 (147)
                      ....||+.|.+++ .    ....|.|.||=.|.   ..+.|-..+.|.+ ........+.+||
T Consensus        64 ~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~-~~~~~~~~W~~L~  125 (125)
T cd04031          64 LNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD-ALLDDEPHWYPLQ  125 (125)
T ss_pred             CCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc-ccccCCcceEECc
Confidence            3567999999985 3    35678999985553   3456666777776 2222233444443

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=86.33  E-value=1.4  Score=31.93  Aligned_cols=44  Identities=14%  Similarity=0.300  Sum_probs=36.3

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcc
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDD   48 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn   48 (147)
                      ...|++.|.|.+.. .+.|.|+||-+|.-   .+.|...+.|.++++.
T Consensus        46 ~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          46 NPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence            56799999998865 48999999966542   4788899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=86.08  E-value=1.5  Score=34.08  Aligned_cols=41  Identities=17%  Similarity=0.535  Sum_probs=33.8

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecCcccccceeeehhhhh
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDWRSLCGVKFLRLEEFI   46 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~RsLCav~flRLEdfL   46 (147)
                      ...||+.|.+.+..  ...|.|.||=+| ..+-|-..+.|.++.
T Consensus       101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d-d~~IG~v~i~l~~l~  143 (153)
T cd08676         101 NPVWNETFRFEVEDVSNDQLHLDIWDHD-DDFLGCVNIPLKDLP  143 (153)
T ss_pred             CCccccEEEEEeccCCCCEEEEEEEecC-CCeEEEEEEEHHHhC
Confidence            56799999999976  678999999666 667777888888887

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=85.81  E-value=1.3  Score=31.23  Aligned_cols=55  Identities=22%  Similarity=0.252  Sum_probs=40.0

Q ss_pred             cccccceeeeee---c--ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348           5 NQAWDQRFSIDL---D--KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I~L---e--RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP   59 (147)
                      ...||+.|.++.   +  ..+.|+|.|+=.|.   ..+.|-..+.|.++-..+....+.+|.|
T Consensus        63 ~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          63 NPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            467999999863   2  23568999996553   2467888888888876777777777765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=85.57  E-value=1.5  Score=30.93  Aligned_cols=44  Identities=20%  Similarity=0.382  Sum_probs=34.4

Q ss_pred             cccccceeeeeecc-----cceeeEEEEEecC---cccccceeeehhhhhcc
Q psy3348           5 NQAWDQRFSIDLDK-----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDD   48 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-----sRELEI~VywrD~---RsLCav~flRLEdfLDn   48 (147)
                      ...||+.|.+....     .+.|+|.||=.|.   ..+.|-..+.|.+++.+
T Consensus        49 nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          49 NPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             CCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence            56799999997653     4789999996653   36788899999999843

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=85.20  E-value=1.6  Score=31.78  Aligned_cols=46  Identities=20%  Similarity=0.198  Sum_probs=36.2

Q ss_pred             cccccceeeeeecc------cceeeEEEEEecC---cccccceeeehhhhhcccC
Q psy3348           5 NQAWDQRFSIDLDK------SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR   50 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR------sRELEI~VywrD~---RsLCav~flRLEdfLDn~~   50 (147)
                      ...||+.|.+++..      ...|.|.||-+|.   ..++|-..+.|.++.+.+.
T Consensus        67 nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~  121 (133)
T cd04009          67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVED  121 (133)
T ss_pred             CCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcccc
Confidence            45799999999865      4578999997764   4678888899999987544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=85.02  E-value=2.1  Score=31.07  Aligned_cols=51  Identities=16%  Similarity=0.178  Sum_probs=33.3

Q ss_pred             cccccceeeeee-c----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceee
Q psy3348           5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMAL   55 (147)
Q Consensus         5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l   55 (147)
                      ...||++|++++ .    ..+.|+|.|+-+|.   ..+=|-..+-|.++..++....+.
T Consensus        61 nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~  119 (122)
T cd08381          61 NPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWY  119 (122)
T ss_pred             CCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceE
Confidence            567999999987 2    35789999996664   223355566666666554444333

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=84.84  E-value=1.7  Score=31.63  Aligned_cols=53  Identities=21%  Similarity=0.396  Sum_probs=34.2

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL   57 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L   57 (147)
                      ...||++|.+++..    .+.|+|.||-.|.   ..+-|-..+-|.++--++....+++|
T Consensus        65 nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          65 NPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             CCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            45799999999865    4579999996653   23445555666665444444444443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=81.28  E-value=3.1  Score=29.80  Aligned_cols=45  Identities=16%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             ccccccceeeeee---cccceeeEEEEEecC---cccccceeeehhhhhcc
Q psy3348           4 GNQAWDQRFSIDL---DKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD   48 (147)
Q Consensus         4 s~q~WDQ~F~I~L---eRsRELEI~VywrD~---RsLCav~flRLEdfLDn   48 (147)
                      ....|++.|.+.+   +.+..|.|.||=+|.   ..+=|-..+.|.+++..
T Consensus        48 ~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          48 LNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             CCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence            3567999999987   345678999985553   34456677778887764

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>KOG0694|consensus

Probab=81.05  E-value=0.97  Score=43.77  Aligned_cols=66  Identities=11%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             cccccceeeeeecccceeeEEEEEe-cCcccccceeeehhhhhccc-----CcceeeecccceeEEEEEEeeCC
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWR-DWRSLCGVKFLRLEEFIDDI-----RHGMALQLEPQGLLFAEIKFLNP   72 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~Vywr-D~RsLCav~flRLEdfLDn~-----~h~~~l~LEPQG~LfaevtF~nP   72 (147)
                      ...|+.+|.+++.+.+++||.||.+ ..+  =|+.-+++.+..++.     ....++.+||+|.++..+...+-
T Consensus        52 ~~~~~~~F~~~v~~~~~~~i~v~~~~~~~--~~~~~a~~~~~~e~~k~~~~~~~~w~~~~~~g~~~~~~~~~~~  123 (694)
T KOG0694|consen   52 IPELRETFHVEVVAGGAKNIIVLLKSPDP--KALSEAQLSLQEESQKLLALEQRLWVLIEELGTLLKPAALTGT  123 (694)
T ss_pred             CchhhhheeeeeecCCceEEEEEecCCcc--hhhHHHhHHHHHHHHHHHhhhhhhccccccccceeeeecccCc
Confidence            3579999999999999999999987 222  133344444444443     25577889999999999988873

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=80.20  E-value=2.9  Score=31.02  Aligned_cols=41  Identities=15%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             cccccceeeeeec----ccceeeEEEEEecCc---ccccceeeehhhh
Q psy3348           5 NQAWDQRFSIDLD----KSRELEIGVYWRDWR---SLCGVKFLRLEEF   45 (147)
Q Consensus         5 ~q~WDQ~F~I~Le----RsRELEI~VywrD~R---sLCav~flRLEdf   45 (147)
                      +..||++|++++.    ..+.|+|.|+-.|.-   .+=|-.-+-|.++
T Consensus        64 nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~  111 (124)
T cd08680          64 KPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF  111 (124)
T ss_pred             CCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence            5679999999987    468999999977642   2344455566666

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-05
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	9e-05

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 8   WDQRFSIDLDKSRELEIGVYWRDWRS---LCGVKFLRLEEFIDDIRHG----MALQLEPQ 60
           +++ F  ++     LE+ V+               L+ +E +            + LEP+
Sbjct: 87  YNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE 146

Query: 61  GLLFAEIKF 69
           G +F  I  
Sbjct: 147 GKVFVVITL 155

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 8   WDQRFSIDLDKSRELEIGVYWRDWRS---LCGVKFLRLEEFIDDIRHGMA--LQLEPQGL 62
           W   F  D+   R++E+ V+               ++ EE + +        + LEP+G 
Sbjct: 65  WHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGK 124

Query: 63  LFAEIKF 69
           ++  I  
Sbjct: 125 VYVIIDL 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	98.75
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.68
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.65
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	98.62
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	97.88
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	97.68
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	97.17
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	97.03
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	97.03
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	96.96
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	96.88
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	96.52
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	96.16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	96.14
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	96.14
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	96.09
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	96.07
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	96.02
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	95.86
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	95.72
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	95.53
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	95.24
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	95.15
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	95.03
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	95.01
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	94.98
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	94.58
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	94.38
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	94.35
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	94.08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	93.96
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	93.61
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	93.42
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	93.16
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	91.95
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	89.14
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	88.88
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	88.67
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	86.54
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	85.75
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	85.59
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	85.23
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	84.3

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=98.75  E-value=1.2e-08  Score=77.29  Aligned_cols=66  Identities=18%  Similarity=0.356  Sum_probs=59.5

Q ss_pred             cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhcc----cCcceeeecccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD----IRHGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn----~~h~~~l~LEPQG~LfaevtF~   70 (147)
                      +..|++.|.+++..+++|+|.||.+|.   ..++|-..+.|++++.+    ..+..+++|+|+|.|+++++|.
T Consensus        84 nP~WNE~F~f~v~~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~~G~i~l~l~~~  156 (157)
T 2fk9_A           84 KPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPEGKVFVVITLT  156 (157)
T ss_dssp             SCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBSSCEEEEEEEEC
T ss_pred             CCccCcEEEEEcCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCCCcEEEEEEEEE
Confidence            578999999999999999999998875   35889999999999976    6789999999999999999984

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.68  E-value=3.5e-08  Score=75.19  Aligned_cols=65  Identities=12%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             cccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcc-----cCcceeeecccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDD-----IRHGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn-----~~h~~~l~LEPQG~LfaevtF~   70 (147)
                      ...|++.|.-.+..+|.|||.|+...- .+-|-.-+.|||++++     ....++|+|||+|.|+++++|+
T Consensus        55 ~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~-~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~Gkl~~~i~~~  124 (126)
T 1yrk_A           55 YPEWKSTFDAHIYEGRVIQIVLMRAAE-EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQYF  124 (126)
T ss_dssp             CCCTTCEEEEECCTTCEEEEEEEEETT-EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSCEEEEEEEEE
T ss_pred             CcCccceEEeeeeCCEEEEEEEEcCCC-CeeeEEEEEHHHHHhhhccCCCceEEEEecccCcEEEEEEEEe
Confidence            358999999999999999999996544 7888888999999954     5679999999999999999986

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.65  E-value=3.9e-08  Score=76.05  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=57.6

Q ss_pred             cccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcc-----cCcceeeecccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDD-----IRHGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn-----~~h~~~l~LEPQG~LfaevtF~   70 (147)
                      ...|++.|.-.+..+|.|||.|+.. --.+-|-.-+.|||++++     ....++|+|||+|.|+++++|+
T Consensus        60 ~P~Wne~Fd~~V~~Gr~l~i~Vfh~-a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~Gkl~v~i~~~  129 (138)
T 2enj_A           60 YPPWDSTFDAHINKGRVMQIIVKGK-NVDLISETTVELYSLAERCRKNNGKTEIWLELKPQGRMLMNARYF  129 (138)
T ss_dssp             CCCSSSEEEECCCSSCEEEEEEECS-SCSCCEEEEEESHHHHHHHHHTTTCEEEEEECBSSCEEEEEEEEC
T ss_pred             CccccceEeeeEECCeEEEEEEEcC-CCCeeeEEEEEHHHHHhhhccCCCceEEEEecccCcEEEEEEEEE
Confidence            3579999999999999999999954 448888888999999954     5679999999999999999995

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=98.62  E-value=8.8e-08  Score=67.72  Aligned_cols=67  Identities=21%  Similarity=0.430  Sum_probs=59.0

Q ss_pred             cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhccc--CcceeeecccceeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDI--RHGMALQLEPQGLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn~--~h~~~l~LEPQG~LfaevtF~n   71 (147)
                      ...|++.|.+++...++|+|.||-+|.   ..+.|-..+.|++++.+.  ....+++|+|+|.|+++++|..
T Consensus        62 nP~WnE~f~f~v~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G~i~l~l~~~~  133 (136)
T 1gmi_A           62 SPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLSG  133 (136)
T ss_dssp             SCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSCEEEEEEEEEE
T ss_pred             CCccCCEEEEEecCCCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCCeEEEEEEEEEe
Confidence            568999999999999999999998874   358888999999999864  3478999999999999999975

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=97.88  E-value=4.3e-05  Score=52.36  Aligned_cols=66  Identities=14%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             cccccceeeeee--cccceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDL--DKSRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~L--eRsRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF~   70 (147)
                      ...|++.|.+++  .....|.|.||-+|.  ..+.|-..+.|.++..+..+..+++|+|+|.+.++++..
T Consensus        53 nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le  122 (126)
T 1rlw_A           53 NPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE  122 (126)
T ss_dssp             SCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEE
Confidence            568999999999  357899999997774  457788899999999999999999999999999998864

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=0.00012  Score=51.17  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=55.8

Q ss_pred             cccccceeeeeec-----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeee---c------ccceeEEEEE
Q psy3348           5 NQAWDQRFSIDLD-----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQ---L------EPQGLLFAEI   67 (147)
Q Consensus         5 ~q~WDQ~F~I~Le-----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~---L------EPQG~Lfaev   67 (147)
                      ...|++.|.+++.     ....|.|.||-+|.   ..+.|...+.|.++.+...+..+++   |      .++|.|++++
T Consensus        50 nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~  129 (140)
T 2dmh_A           50 NPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVI  129 (140)
T ss_dssp             SCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred             CCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEE
Confidence            5689999999985     57999999997764   3478888999999998877666665   4      3459999999


Q ss_pred             EeeCCc
Q psy3348          68 KFLNPM   73 (147)
Q Consensus        68 tF~nPv   73 (147)
                      +|..+-
T Consensus       130 ~~~p~~  135 (140)
T 2dmh_A          130 GYDPPS  135 (140)
T ss_dssp             EECCCB
T ss_pred             EEECCC
Confidence            998654

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=97.17  E-value=0.0014  Score=45.59  Aligned_cols=64  Identities=20%  Similarity=0.391  Sum_probs=50.7

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc-------cceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE-------PQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE-------PQG~LfaevtF~   70 (147)
                      ...|++.|.+++.. ...|.|.||-+|.   ..+.|...+.|+++.+...  .+++|+       ++|.|+++++|.
T Consensus        57 nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           57 NPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             SCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSCC--EECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCCc--eEEEeecCCCCCccceEEEEEEEEE
Confidence            56899999999975 5679999998775   3567888899999977654  455554       779999999985

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=97.03  E-value=0.0019  Score=45.47  Aligned_cols=64  Identities=16%  Similarity=0.304  Sum_probs=50.8

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC--------------cccccceeeehhhhhcccCcceeeecc-------ccee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--------------RSLCGVKFLRLEEFIDDIRHGMALQLE-------PQGL   62 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--------------RsLCav~flRLEdfLDn~~h~~~l~LE-------PQG~   62 (147)
                      ...|++.|.+++.. ..+|.|.||-.|.              -.+.|-..+-|.++  ......+++|+       ++|.
T Consensus        61 nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~  138 (148)
T 3kwu_A           61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGA  138 (148)
T ss_dssp             SCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCE
T ss_pred             CCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceE
Confidence            56899999999943 5789999998874              45778888899998  33455677887       5699


Q ss_pred             EEEEEEee
Q psy3348          63 LFAEIKFL   70 (147)
Q Consensus        63 LfaevtF~   70 (147)
                      |+++++|.
T Consensus       139 i~l~l~~e  146 (148)
T 3kwu_A          139 IRLHISVE  146 (148)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999984

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=97.03  E-value=0.0021  Score=45.46  Aligned_cols=66  Identities=17%  Similarity=0.286  Sum_probs=52.5

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCc------ceeeeccc-------ceeEEEEE
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRH------GMALQLEP-------QGLLFAEI   67 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h------~~~l~LEP-------QG~Lfaev   67 (147)
                      ...|++.|.+++.. ...|.|.||-+|.   ..+.|...+.|+++.....+      ..+++|+|       .|.|.+++
T Consensus        70 nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l  149 (153)
T 3b7y_A           70 NPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKM  149 (153)
T ss_dssp             SCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEE
T ss_pred             CCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEE
Confidence            56899999999965 4589999997765   34678888999999887643      46778866       49999999


Q ss_pred             Eee
Q psy3348          68 KFL   70 (147)
Q Consensus        68 tF~   70 (147)
                      +|.
T Consensus       150 ~~~  152 (153)
T 3b7y_A          150 TYL  152 (153)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            985

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=96.96  E-value=0.0011  Score=45.90  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=52.7

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcc-cCcceeeec----ccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDD-IRHGMALQL----EPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn-~~h~~~l~L----EPQG~LfaevtF~   70 (147)
                      ...|++.|.+++.. ...|.|.||-+|.   ..+.|...+-|++++.. +.+..+++|    .+.|.|.++++|.
T Consensus        55 nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~  129 (136)
T 1wfj_A           55 TPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             SCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEE
Confidence            56899999999987 7899999997764   35778888999999764 345556666    4679999999996

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=96.88  E-value=0.0018  Score=48.52  Aligned_cols=66  Identities=21%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhcccCc-----ceeeeccc-------ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRH-----GMALQLEP-------QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h-----~~~l~LEP-------QG~LfaevtF   69 (147)
                      ...|++.|.++++....|+|.||=.|.   ..+.|...+.|.+++.....     .++++|++       +|.|.+.+.|
T Consensus        80 nP~Wne~f~f~v~~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~  159 (173)
T 2nq3_A           80 SPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  159 (173)
T ss_dssp             SCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             CCeECCEEEEEeCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEee
Confidence            467999999999999999999996653   34778889999999875332     45777765       6999999998


Q ss_pred             e
Q psy3348          70 L   70 (147)
Q Consensus        70 ~   70 (147)
                      .
T Consensus       160 l  160 (173)
T 2nq3_A          160 L  160 (173)
T ss_dssp             E
T ss_pred             e
Confidence            8

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=96.52  E-value=0.0057  Score=44.69  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             cccccceeeeeeccc-ceeeEEEEEecC---cccccceeeehhhhhcccCc--c----eeeeccc-------ceeEEEEE
Q psy3348           5 NQAWDQRFSIDLDKS-RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRH--G----MALQLEP-------QGLLFAEI   67 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs-RELEI~VywrD~---RsLCav~flRLEdfLDn~~h--~----~~l~LEP-------QG~Lfaev   67 (147)
                      ...|++.|.+++... ..|.|.||-.|.   ..+.|-..+.|.++.....+  .    .++.|+|       .|.|.+.+
T Consensus        58 nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l  137 (176)
T 3m7f_B           58 NPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKM  137 (176)
T ss_dssp             SCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEE
T ss_pred             CCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEE
Confidence            467999999999754 589999996653   35678888999999887554  1    5778875       79999999


Q ss_pred             EeeC
Q psy3348          68 KFLN   71 (147)
Q Consensus        68 tF~n   71 (147)
                      +|.-
T Consensus       138 ~~~p  141 (176)
T 3m7f_B          138 TYLP  141 (176)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            9973

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=96.16  E-value=0.0072  Score=42.56  Aligned_cols=58  Identities=19%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccccee
Q psy3348           5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGL   62 (147)
Q Consensus         5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~   62 (147)
                      ...|+++|.++ +.    ..+.|+|.||-.|.   ..+.|-..+.|.++........+.+|+|.|.
T Consensus        68 nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  133 (134)
T 2b3r_A           68 NPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY  133 (134)
T ss_dssp             SCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred             CCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence            46799999998 65    45799999997764   3467788889999988888888999998874

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.14  E-value=0.0057  Score=43.07  Aligned_cols=57  Identities=19%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ...|++.|.+++..    .+.|+|.||-.|.   ..+.|-..+-|.++........+..|+|.|
T Consensus        80 nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  143 (147)
T 2enp_A           80 KPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG  143 (147)
T ss_dssp             SCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred             CCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence            46899999999874    5799999996664   346778888999997777778899999876

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=96.14  E-value=0.016  Score=40.09  Aligned_cols=65  Identities=15%  Similarity=0.220  Sum_probs=47.2

Q ss_pred             cccccceeeeeecccceeeEEEEEecCc------ccccceeeehhhhhcc-cCcceeeecc---------cceeEEEEEE
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDWR------SLCGVKFLRLEEFIDD-IRHGMALQLE---------PQGLLFAEIK   68 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~R------sLCav~flRLEdfLDn-~~h~~~l~LE---------PQG~Lfaevt   68 (147)
                      ...|++.|.+.+.....|+|.||-+|.-      .+.|-..+.|+++.+. ......++|.         .+|.|.+++.
T Consensus        51 nP~wne~f~f~v~~~~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           51 DPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             SCEEEEEEEEEEETTCCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             CCCccCEEEEEeCCCCEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence            4679999999999988999999977652      5777778888887543 2222334443         3688999886


Q ss_pred             e
Q psy3348          69 F   69 (147)
Q Consensus        69 F   69 (147)
                      +
T Consensus       131 ~  131 (132)
T 3pyc_A          131 T  131 (132)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=96.09  E-value=0.007  Score=42.25  Aligned_cols=56  Identities=20%  Similarity=0.369  Sum_probs=46.2

Q ss_pred             cccccceeeee-ecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSID-LDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~-LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.++ +..    ...|.|.||-+|.   ..+-|-..+.|.++..++.+...+.|++|
T Consensus        78 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           78 NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             SCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             CCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            46799999998 543    3789999998774   24667788899999999999999999975

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=96.07  E-value=0.0065  Score=42.44  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+++...    +.|+|.||-+|.   ..+.|-..+.|.++-....+..+++|+|.
T Consensus        81 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  143 (143)
T 3f04_A           81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             SCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBCC
T ss_pred             CCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcCC
Confidence            467999999988644    799999997765   35678888899999888888899999984

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.02  E-value=0.0076  Score=42.13  Aligned_cols=58  Identities=21%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             cccccceeeeee-c----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccccee
Q psy3348           5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGL   62 (147)
Q Consensus         5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~   62 (147)
                      ...|++.|.+++ .    ....|.|.||-+|.   ..+.|-..+.|+++.....+..+++|+|.|.
T Consensus        73 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  138 (141)
T 2d8k_A           73 NPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP  138 (141)
T ss_dssp             SCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred             CCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence            568999999985 2    35889999997764   3467778889999998888999999999873

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=95.86  E-value=0.014  Score=40.60  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348           5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ...|++.|.++ +.    ..+.|.|.||-+|.   ..+.|-..+.|.++........+.+|+|++
T Consensus        76 nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           76 NPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             SCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             CCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            45799999986 54    46799999998775   346788888999998877888999999875

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=95.72  E-value=0.014  Score=41.25  Aligned_cols=59  Identities=15%  Similarity=0.288  Sum_probs=46.8

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeE
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL   63 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~L   63 (147)
                      ...|++.|.+++..    .+.|+|.||-.|.   ..+.|-..+-|.++.....+..+++|+|.|.-
T Consensus        73 nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           73 NPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             SCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             CCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence            46799999998865    5579999997664   35788889999999888888999999998753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=95.53  E-value=0.036  Score=42.59  Aligned_cols=67  Identities=13%  Similarity=0.197  Sum_probs=53.7

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc--------ceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP--------QGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP--------QG~LfaevtF   69 (147)
                      ...|++.|.+++..    .+.|+|.||-.|.   ..+.|-..+.|.++........+++|+|        .|.|.+.+.|
T Consensus        66 nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~  145 (284)
T 2r83_A           66 NPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY  145 (284)
T ss_dssp             SCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEE
T ss_pred             CCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEe
Confidence            56799999999864    4799999997774   4577888889999887777777788865        4889988888


Q ss_pred             eC
Q psy3348          70 LN   71 (147)
Q Consensus        70 ~n   71 (147)
                      ..
T Consensus       146 ~p  147 (284)
T 2r83_A          146 VP  147 (284)
T ss_dssp             ET
T ss_pred             cC
Confidence            63

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=95.24  E-value=0.03  Score=38.52  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=42.7

Q ss_pred             cccccceeeeee-c----ccceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+++ .    ....|+|.||-.|.     ..+.|-..+.|++++.+. ...+++|+|+
T Consensus        70 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             SCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             CCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            468999999994 3    34899999997765     346788889999987654 6778888775

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.15  E-value=0.019  Score=39.97  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=45.1

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC----c-ccccceeeehhhhhcccCcceeeecccce
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW----R-SLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~----R-sLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ...|++.|.+++..    .+.|+|.||-+|.    . .+.|-..+.|.++........+.+|.|.|
T Consensus        72 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A           72 NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             SCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            56899999999854    4699999998874    1 37788888898887766777788888765

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=95.03  E-value=0.018  Score=40.65  Aligned_cols=55  Identities=20%  Similarity=0.348  Sum_probs=42.8

Q ss_pred             cccccceeeeeecc---cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDLDK---SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR---sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+++..   .+.|.|.||-+|.   ..+.|-..+.|.++.... ...+++|+|.
T Consensus        80 nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~  140 (149)
T 1a25_A           80 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  140 (149)
T ss_dssp             SCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred             CCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence            56799999999865   4789999997765   346788888999988763 5567777765

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=94.98  E-value=0.039  Score=38.81  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ...|++.|.+++..    .+.|+|.||-.|.   ..+.|-..+-|.++-.......+.+|+|.+
T Consensus        71 nP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           71 HTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            46899999999864    5789999997664   356778888899986566777888888753

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=94.58  E-value=0.12  Score=38.55  Aligned_cols=70  Identities=16%  Similarity=0.373  Sum_probs=49.6

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcc------eeeecc-c-----------ceeE
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHG------MALQLE-P-----------QGLL   63 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~------~~l~LE-P-----------QG~L   63 (147)
                      +..|++.|.+.+.. ...|.|.||-+|.  -.+-|-..+-|++++....++      +..+++ |           .|.|
T Consensus        54 nP~WnE~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~l  133 (167)
T 2cjs_A           54 QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRI  133 (167)
T ss_dssp             SCEEEEEEEEECCCTTSEEEEEEEECCSSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEeeCCCCEEEEEEEECCCCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceE
Confidence            56899999999974 4679999997773  236677888999987654333      222222 3           3448


Q ss_pred             EEEEEeeCCcc
Q psy3348          64 FAEIKFLNPMI   74 (147)
Q Consensus        64 faevtF~nPvi   74 (147)
                      +++++|..|.-
T Consensus       134 ll~~~~e~~~~  144 (167)
T 2cjs_A          134 LLDAHFELPLD  144 (167)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEeecCCC
Confidence            88999988873

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=94.38  E-value=0.058  Score=38.44  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             cccccceeeeee--c-ccceeeEEEEEecC----cccccceeeehhhhhc-ccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDL--D-KSRELEIGVYWRDW----RSLCGVKFLRLEEFID-DIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~L--e-RsRELEI~VywrD~----RsLCav~flRLEdfLD-n~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+++  + -.+.|+|.||-.|.    -.+.|-..+.|.++.. ......+.+|.|+
T Consensus        75 nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A           75 DPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             SCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            467999999998  3 33669999997775    2477888899999885 5666677777764

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=94.35  E-value=0.046  Score=38.80  Aligned_cols=56  Identities=14%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+++..    .+.|.|.||-+|.   ..+.|-..+.|.++-....+..+++|+|.
T Consensus        89 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           89 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            56899999999864    5889999997764   34677888899998777777788888763

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=94.08  E-value=0.052  Score=39.70  Aligned_cols=58  Identities=19%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             cccccceeeeeec-ccceeeEEEE-EecC---cccccceeeehhhhhcccCcceeeeccccee
Q psy3348           5 NQAWDQRFSIDLD-KSRELEIGVY-WRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGL   62 (147)
Q Consensus         5 ~q~WDQ~F~I~Le-RsRELEI~Vy-wrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~   62 (147)
                      ...|+++|.+++. ....|+|.|| -.|.   ..+.|-..+.|+++...+.+..+.+|+|.+.
T Consensus        80 nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  142 (171)
T 2q3x_A           80 DPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSS  142 (171)
T ss_dssp             SCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred             CCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccc
Confidence            4679999999984 4688999999 5554   2477888889999987777888999998875

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=93.96  E-value=0.14  Score=36.39  Aligned_cols=45  Identities=16%  Similarity=0.471  Sum_probs=34.6

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhccc
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDI   49 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~   49 (147)
                      +..|++.|.+++.. ...|.|.||-+|.  ..+-|-..+-|++++...
T Consensus        45 nP~WnE~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           45 QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             SCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCS
T ss_pred             CceECCEEEEEEeCCCCeEEEEEEECCCCCCCeEEEEEEEHHHhhhcC
Confidence            56899999999974 4679999997773  235677788898887654

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=93.61  E-value=0.09  Score=35.71  Aligned_cols=52  Identities=23%  Similarity=0.330  Sum_probs=37.3

Q ss_pred             cccccceeeeee-c----ccceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeec
Q psy3348           5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQL   57 (147)
Q Consensus         5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~L   57 (147)
                      ...|++.|.+++ .    ....|+|.||-+|.     ..+.|-..+.|.+++.+. ...+.+|
T Consensus        67 nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           67 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             SCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             CCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            568999999995 2    46899999997765     346777888898887643 5555554

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=93.42  E-value=0.16  Score=35.18  Aligned_cols=56  Identities=14%  Similarity=0.175  Sum_probs=41.7

Q ss_pred             cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcc-cCcceeeecccc
Q psy3348           5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD-IRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn-~~h~~~l~LEPQ   60 (147)
                      ...|++.|.++ +.    ..+.|+|.||-.|.   ..+-|-..+.|.++... ....++++|+|.
T Consensus        70 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             SCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            56899999985 54    45799999997764   34677788899998765 344677887764

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=93.16  E-value=0.088  Score=38.50  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhc-ccCcceeeeccc
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFID-DIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLD-n~~h~~~l~LEP   59 (147)
                      ...|++.|.+++..    .+.|+|.||-.|.   ..+-|-..+.|+++.+ ......+.+|.|
T Consensus        93 nP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A           93 TLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             SEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             CCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            46799999999875    5789999997764   3455667778888854 455566666654

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=91.95  E-value=0.22  Score=46.34  Aligned_cols=83  Identities=18%  Similarity=0.272  Sum_probs=60.4

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccceeEEEEE--Eee-CCccCCC
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEI--KFL-NPMISRK   77 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQG~Lfaev--tF~-nPvieR~   77 (147)
                      ...|++.|.+++..  ...|+|.||-.|.  ..+.|-..+.|+++.....+..+++|+|++-+.++.  +++ ++.+.-.
T Consensus        68 NPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~~e~~l~~~~e~c~~l~VRla  147 (749)
T 1cjy_A           68 NPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFS  147 (749)
T ss_dssp             SCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEETTTEEEEEEECCEECCSCSSEEC
T ss_pred             CCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecCCCceEeeecccccccccccccc
Confidence            46799999999975  6789999997765  456788889999998888899999999997666543  222 2222222


Q ss_pred             chhhHHHHHH
Q psy3348          78 PKLQRQRKIF   87 (147)
Q Consensus        78 pkLqRQkriF   87 (147)
                      -.|..+.+-|
T Consensus       148 ~~Ls~eEk~f  157 (749)
T 1cjy_A          148 MALCDQEKTF  157 (749)
T ss_dssp             SSCCHHHHHH
T ss_pred             cccchhhhhh
Confidence            3455555566

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=89.14  E-value=0.72  Score=38.30  Aligned_cols=65  Identities=15%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             cccccceeeeeeccc--ceeeEEEEEecC---cccccceeeehhhhhcccC----cceeeec--ccceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDKS--RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR----HGMALQL--EPQGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs--RELEI~VywrD~---RsLCav~flRLEdfLDn~~----h~~~l~L--EPQG~LfaevtF   69 (147)
                      ...|++.|.+++...  +.|.|.||-+|.   ..+.|-..+.|.++.....    ....+.|  .+.|.|.+.+.+
T Consensus       431 nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l  506 (510)
T 3jzy_A          431 NPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDL  506 (510)
T ss_dssp             SCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEE
T ss_pred             CCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEE
Confidence            568999999988643  569999997775   3578888999999987543    3333444  478999888765

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=88.88  E-value=0.57  Score=31.77  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhh
Q psy3348           5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEE   44 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEd   44 (147)
                      ...|++.|.+++...    ..|+|.||-+|.   ..+.|-..+-|.+
T Consensus        65 nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~  111 (138)
T 3n5a_A           65 NPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS  111 (138)
T ss_dssp             SCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSS
T ss_pred             CCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEcccc
Confidence            567999999998654    589999997764   2356666777764

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=88.67  E-value=0.8  Score=41.06  Aligned_cols=64  Identities=20%  Similarity=0.352  Sum_probs=48.9

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec-----c--cceeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL-----E--PQGLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L-----E--PQG~LfaevtF~n   71 (147)
                      ...|++.|.+++.-  ...|.|.||-.|.   ..+.|-..+.|.++....+   .++|     +  +.|.||+.|.|.|
T Consensus       549 NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~r---~v~L~d~~g~~~~~~~L~v~i~~~~  624 (624)
T 1djx_A          549 NPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR---HVHLLSKNGDQHPSATLFVKISIQD  624 (624)
T ss_dssp             SCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEEE---EEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             CCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCcE---EEeCCCCCcCCCCceEEEEEEEEEC
Confidence            56799999998864  3478999997663   4678888999999877654   3444     2  4689999999875

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=86.54  E-value=0.22  Score=42.83  Aligned_cols=70  Identities=11%  Similarity=0.180  Sum_probs=17.1

Q ss_pred             ccccccceeeee-ecccceeeEEEEEe-c------CcccccceeeehhhhhcccCcceeeecc-----------------
Q psy3348           4 GNQAWDQRFSID-LDKSRELEIGVYWR-D------WRSLCGVKFLRLEEFIDDIRHGMALQLE-----------------   58 (147)
Q Consensus         4 s~q~WDQ~F~I~-LeRsRELEI~Vywr-D------~RsLCav~flRLEdfLDn~~h~~~l~LE-----------------   58 (147)
                      ....|++.|.++ +....+|+|.||-. |      ...+.|...+.|+++.....+..+.+|+                 
T Consensus        53 lnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~  132 (483)
T 3bxj_A           53 DTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGG  132 (483)
T ss_dssp             ------CCEECC------------------------------------------CCEECC--------------------
T ss_pred             CCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccc
Confidence            356899999998 55678999999852 2      2357788888999988777777777773                 


Q ss_pred             ------------cceeEEEEEEeeCCc
Q psy3348          59 ------------PQGLLFAEIKFLNPM   73 (147)
Q Consensus        59 ------------PQG~LfaevtF~nPv   73 (147)
                                  +.|.|.+.+.|..-.
T Consensus       133 ~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A          133 GSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             ------------------CEEEEEECC
T ss_pred             cccccccccCCCCCceEEEEEEeeeee
Confidence                        358999999997544

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=85.75  E-value=1.1  Score=31.65  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             ccccccceeeeeecc----cceeeEEEEEecC---cccccceeeehh
Q psy3348           4 GNQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLE   43 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLE   43 (147)
                      ....|++.|.+++..    ...|+|.||-.|.   ..+.|-..+-|.
T Consensus        73 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~  119 (159)
T 1tjx_A           73 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN  119 (159)
T ss_dssp             SSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETT
T ss_pred             CCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCC
Confidence            356899999999864    4679999997765   235566666776

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=85.59  E-value=1  Score=31.53  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=29.8

Q ss_pred             cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhh
Q psy3348           5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEE   44 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEd   44 (147)
                      ...|++.|.+++...    +.|+|.||-.|.   ..+.|-..+-|.+
T Consensus        79 nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           79 NAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             SEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             CCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            568999999998764    789999997663   2355666666666

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=85.23  E-value=2.8  Score=32.76  Aligned_cols=66  Identities=23%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecCc---ccccceee-ehhhhhcc-cCcceeeeccc-------ceeEEEEEE
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDWR---SLCGVKFL-RLEEFIDD-IRHGMALQLEP-------QGLLFAEIK   68 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~R---sLCav~fl-RLEdfLDn-~~h~~~l~LEP-------QG~Lfaevt   68 (147)
                      ...|++.|.+++..    .+.|+|.||-.|.-   .+-|-..+ .|-++.+. .....+.+|++       .|.|.+.+.
T Consensus        67 nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~  146 (296)
T 1dqv_A           67 NPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLC  146 (296)
T ss_dssp             SCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEE
T ss_pred             CCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEE
Confidence            56899999999853    35899999976641   22222223 13344442 23345555554       377777766


Q ss_pred             ee
Q psy3348          69 FL   70 (147)
Q Consensus        69 F~   70 (147)
                      |.
T Consensus       147 y~  148 (296)
T 1dqv_A          147 YL  148 (296)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=84.30  E-value=0.42  Score=34.23  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhh
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEF   45 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdf   45 (147)
                      ...|++.|.+++..    .+.|+|.||-+|.   ..+.|-..+-|.++
T Consensus        86 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           86 NPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            56899999999965    6799999997764   23556666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	0.003

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.2 bits (75), Expect = 0.003
 Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 5   NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHG-----MALQLEP 59
              W   F   + + R ++I +             + +    +  +         L L+P
Sbjct: 52  YPEWKSTFDAHIYEGRVIQIVLMRAAEDP-MSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110

Query: 60  QGLLFAEIKF 69
           Q  +   +++
Sbjct: 111 QAKVLMCVQY 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	98.97
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	98.95
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	97.23
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	97.12
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	96.89
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	95.55
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	95.43
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	95.43
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	95.2
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	92.83
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	91.41
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	89.89
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	89.86
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	88.62

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=5.2e-10  Score=79.17  Aligned_cols=65  Identities=12%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             cccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcc-----cCcceeeecccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDD-----IRHGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn-----~~h~~~l~LEPQG~LfaevtF~   70 (147)
                      ...|||.|.+.++..++|+|.||-+| ..++|-..+.|.+++++     ..+.++++|+|+|.|+++++|.
T Consensus        52 nP~WnE~F~~~v~~~~~l~i~V~d~d-d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~Gkl~l~v~~f  121 (123)
T d1bdya_          52 YPEWKSTFDAHIYEGRVIQIVLMRAA-EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMCVQYF  121 (123)
T ss_dssp             CCCTTCEEEEECCTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSCEEEEEEEEE
T ss_pred             CcccceEEEEEEccccEEEEEEEEcc-ccccCccEEehhheeeccccCCCcccEEEeCCCCEEEEEEEEEe
Confidence            46899999999999999999999877 56899999999999874     4577999999999999999996

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.95  E-value=8.3e-10  Score=78.16  Aligned_cols=67  Identities=21%  Similarity=0.416  Sum_probs=59.3

Q ss_pred             ccccccceeeeeecccceeeEEEEEecCc---ccccceeeehhhhhcccC--cceeeecccceeEEEEEEee
Q psy3348           4 GNQAWDQRFSIDLDKSRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIR--HGMALQLEPQGLLFAEIKFL   70 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRsRELEI~VywrD~R---sLCav~flRLEdfLDn~~--h~~~l~LEPQG~LfaevtF~   70 (147)
                      .+..||++|.+++...++|+|.||.+|..   .+||...+.|++++++..  ...+++|+|+|.++++|+|.
T Consensus        61 ~~P~Wne~f~f~v~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~G~v~l~v~~~  132 (136)
T d1gmia_          61 NSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLS  132 (136)
T ss_dssp             SSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSCEEEEEEEEE
T ss_pred             CCccCccEEEEEEecCCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCCcEEEEEEEEE
Confidence            35689999999999999999999988763   589999999999998865  44689999999999999986

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.23  E-value=0.00017  Score=49.31  Aligned_cols=66  Identities=18%  Similarity=0.340  Sum_probs=51.2

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcc-cCcceeee----cccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDD-IRHGMALQ----LEPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn-~~h~~~l~----LEPQG~LfaevtF~   70 (147)
                      ...||+.|.+++.. ..+|.|.||=+|..   .++|...+.|.+++.. ........    -++.|.|.++++|.
T Consensus        55 nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~  129 (136)
T d1wfja_          55 TPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             SCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             cEEEeeEEEEEEcCccceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEE
Confidence            56799999999986 77899999966542   4899999999998765 32333333    36789999999996

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00073  Score=45.17  Aligned_cols=65  Identities=15%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccceeEEEEEEe
Q psy3348           5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKF   69 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF   69 (147)
                      ...|++.|.++++.  ...|+|.||=+|.  ..+.|-..+.|.++.....+...++|++.+...++++.
T Consensus        53 nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l  121 (126)
T d1rlwa_          53 NPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSL  121 (126)
T ss_dssp             SCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred             cceeceeeeecccCcccCcEEEEEEECCCCCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEE
Confidence            46799999999865  4579999986654  34678888999999888889999999999887777764

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0016  Score=43.82  Aligned_cols=66  Identities=20%  Similarity=0.380  Sum_probs=50.7

Q ss_pred             cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeec-----ccceeEEEEEEee
Q psy3348           5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQL-----EPQGLLFAEIKFL   70 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~L-----EPQG~LfaevtF~   70 (147)
                      ...|++.|.+++.. ...|+|.||=+|..   .+.|-..+-|.++.+...+...|..     .++|.|+++++|.
T Consensus        50 nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          50 NPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             SCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             eEEEEEEEEEEEeccCceeEEEEEEccCCcCcceEEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEE
Confidence            45799999999965 67899999955442   4788888999999887666554432     3579999999875

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.016  Score=39.65  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             ccccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhcccC---cceeeec---------ccceeEEEEEE
Q psy3348           4 GNQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR---HGMALQL---------EPQGLLFAEIK   68 (147)
Q Consensus         4 s~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn~~---h~~~l~L---------EPQG~Lfaevt   68 (147)
                      ....|+|.|.+++.....|.|.||-.|.   -.+.|...+.|.+++....   ....+.+         ...|-|.+.+.
T Consensus        49 ~nP~wne~f~f~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~  128 (133)
T d2nq3a1          49 NSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD  128 (133)
T ss_dssp             SSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred             ccEEEcceEEEEEEecceeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence            4568999999999999999999997765   2578999999999987533   2333333         24466666554


Q ss_pred             e
Q psy3348          69 F   69 (147)
Q Consensus        69 F   69 (147)
                      +
T Consensus       129 ~  129 (133)
T d2nq3a1         129 G  129 (133)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.43  E-value=0.024  Score=39.39  Aligned_cols=56  Identities=20%  Similarity=0.448  Sum_probs=43.3

Q ss_pred             cccccceeeeeeccc-ceeeEEEEEecC--cccccceeeehhhhhcccC--cceeeecccc
Q psy3348           5 NQAWDQRFSIDLDKS-RELEIGVYWRDW--RSLCGVKFLRLEEFIDDIR--HGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs-RELEI~VywrD~--RsLCav~flRLEdfLDn~~--h~~~l~LEPQ   60 (147)
                      ...|||.|.++++.. ..|.|.||=+|.  -.+.|...+.|.+++....  .+.+++|+++
T Consensus        42 nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          42 QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             SCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             CCeEEEEEEEeeccccceEEEEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEECCcc
Confidence            578999999999875 679999996654  3478899999999986544  4457888654

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.43  E-value=0.017  Score=39.04  Aligned_cols=64  Identities=22%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             cccccceeeeeeccc--ceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeec-----c--cceeEEEEEEeeC
Q psy3348           5 NQAWDQRFSIDLDKS--RELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQL-----E--PQGLLFAEIKFLN   71 (147)
Q Consensus         5 ~q~WDQ~F~I~LeRs--RELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~L-----E--PQG~LfaevtF~n   71 (147)
                      ...|+|.|.+++...  ..|.|.||=+|..   .+-|-..+.|.++-...+|   ++|     +  +.|.||+.|.+.|
T Consensus        56 nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g~~~---~~L~~~~g~~~~~~~L~v~i~~~d  131 (131)
T d1qasa2          56 NPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRH---VHLLSKNGDQHPSATLFVKISIQD  131 (131)
T ss_dssp             SCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCCEEEE---EEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccCCCCEE---EECCCCCcCCCCCCEEEEEEEEEC
Confidence            567999999877543  5689999977653   2677778899988665442   444     1  4667888888765

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.016  Score=39.63  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             ccccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348           4 GNQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG   61 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG   61 (147)
                      ....||+.|.+++..    ...|+|.||-.|.   ..+.|-..+.|.++-..+.+..+.+|+|.+
T Consensus        70 ~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_          70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            456799999999854    4669999997664   346888889999975567789999999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.83  E-value=0.078  Score=35.50  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             ccccccceeeeeecc----cceeeEEEEEecC--c-ccccceeee-hhhhhcc-cCcceeeecccce
Q psy3348           4 GNQAWDQRFSIDLDK----SRELEIGVYWRDW--R-SLCGVKFLR-LEEFIDD-IRHGMALQLEPQG   61 (147)
Q Consensus         4 s~q~WDQ~F~I~LeR----sRELEI~VywrD~--R-sLCav~flR-LEdfLDn-~~h~~~l~LEPQG   61 (147)
                      ....|++.|.+++..    ...|+|.||-+|.  + .+=|-..+- +.++.+. ....++.+|++.|
T Consensus        64 ~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~G  130 (130)
T d1dqva1          64 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG  130 (130)
T ss_dssp             SSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS
T ss_pred             CCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccCC
Confidence            356899999998865    3569999996653  1 111222332 2344454 3456799999988

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.41  E-value=0.14  Score=34.09  Aligned_cols=56  Identities=20%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348           5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ   60 (147)
Q Consensus         5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ   60 (147)
                      ...|++.|.+. +.    ....|+|.||-.|.   ..+-|-..+-|.++-..+.+..+.+|+|+
T Consensus        76 nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          76 NPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             SCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             CceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            45799999986 33    34579999997764   23667778889998888888889999986

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.89  E-value=0.18  Score=33.97  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=40.5

Q ss_pred             cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc
Q psy3348           5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE   58 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE   58 (147)
                      ...|++.|++++..    ...|+|.||-+|.   ..+.|-..+.|.++-..+....+.+|+
T Consensus        81 ~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_          81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             SCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CcceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            46799999998854    4579999997654   346788888999976556666677765

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.2  Score=32.92  Aligned_cols=54  Identities=22%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             ccccccceeeee-ec----ccceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeecc
Q psy3348           4 GNQAWDQRFSID-LD----KSRELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQLE   58 (147)
Q Consensus         4 s~q~WDQ~F~I~-Le----RsRELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~LE   58 (147)
                      ....|++.|+++ +.    ..+.|+|.||-.|-     ..++|-..+.|.++.-+... .+.+||
T Consensus        62 ~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~-~Wy~L~  125 (125)
T d2bwqa1          62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP-HWYKLQ  125 (125)
T ss_dssp             SSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCE-EEEECC
T ss_pred             CCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCC-EEEeCc
Confidence            356799999986 33    24579999997653     23799999999998755432 255554

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.62  E-value=0.3  Score=32.30  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=38.4

Q ss_pred             cccccceeeeeecc---cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348           5 NQAWDQRFSIDLDK---SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP   59 (147)
Q Consensus         5 ~q~WDQ~F~I~LeR---sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP   59 (147)
                      ...||+.|.+++..   .+.|+|.||-+|.   ..+.|-..+.|.++... ....+.+|.+
T Consensus        64 nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          64 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            46799999988743   5679999996654   24678888999887433 3344666654