Psyllid ID: psy3362

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGTSEGTSAQNPRIN
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHcccccHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEEEcccccccccEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccEEEEcccHHcHHHHHHHHccEEHcHHHHHHHHccccccHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHHcccHHHHHcccccHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHcHHccccccccHHHHcccccccccccHHHHHHHHHHHHHHccEEccHHHHHHHHccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHccccHEEEEccccHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccEEEEEEEcccccccEEEEEEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
MAITNILLLSQIAGYVIAWMLSLCIIIpmtlhqdefkghcllfstgawqeaDGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHlfhvfpdieegglATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALfldggidvaDQVFSSVlykdnevrfkqwmyypqhplqeqepdgdrqwveqspllkqlqyleyssgvifNHIRLLARVFTTrsmgytnltlgsnqrleflGDTVLQLITSDylynhfpehhegHLSLLRSSlvnnrtqsvvcndigmpffaniinpkvdlkMKDRADLLEAFLGAMYIDKGMEACEQFCkvcffprlQYFILnqewndpksklQQCCLTLrtldggepdipiYKVIehvgptnsrsyTVAVYFKNERLAKATGNSIQQAEMNAAKVALqkcpsicpqldHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLksqdnvnpqfvggtsegtsaqnprin
MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNltlgsnqrleFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKViehvgptnsrSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETlksqdnvnpqfvggtsegtsaqnprin
MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHlsllrsslVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGTSEGTSAQNPRIN
**ITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH************WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRE***********************************
*AITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSD****VELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV**KMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT*NSIQQAEMNAAKVALQKCPS********************************CWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLK***NVNP******************
MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ********QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT************
MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVN*Q*****************
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGTSEGTSAQNPRIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query550 2.2.26 [Sep-21-2011]
Q9NRR41374 Ribonuclease 3 OS=Homo sa yes N/A 0.674 0.270 0.592 1e-130
Q5HZJ01373 Ribonuclease 3 OS=Mus mus yes N/A 0.676 0.270 0.590 1e-130
O013261086 Ribonuclease 3 OS=Caenorh yes N/A 0.658 0.333 0.476 6e-98
Q61XX91061 Ribonuclease 3 OS=Caenorh N/A N/A 0.634 0.328 0.502 2e-96
Q9CHD0231 Ribonuclease 3 OS=Lactoco yes N/A 0.389 0.926 0.337 2e-26
Q030F9231 Ribonuclease 3 OS=Lactoco yes N/A 0.389 0.926 0.337 2e-26
C0MCR4230 Ribonuclease 3 OS=Strepto N/A N/A 0.396 0.947 0.367 2e-26
A2RLZ8231 Ribonuclease 3 OS=Lactoco yes N/A 0.389 0.926 0.337 2e-26
A8AWC2232 Ribonuclease 3 OS=Strepto N/A N/A 0.403 0.956 0.329 7e-26
A3CP46232 Ribonuclease 3 OS=Strepto yes N/A 0.38 0.900 0.350 1e-25
>sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2 Back     alignment and function desciption
 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)

Query: 93   GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
            G+   +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972  GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031

Query: 153  HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
             E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090

Query: 213  PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
            P+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150

Query: 273  DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
            D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V  ++GM  +A I N K    
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209

Query: 329  VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
            V L+ K  ADLLE+F+ A+YIDK +E    F  VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269

Query: 389  LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
            LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+    G SIQQAEM AA  A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328

Query: 449  LQKCPSICPQLDHQKRVIAK 468
            L+K     PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Ribonuclease III double-stranded (ds) RNA-specific endoribonuclease that is involved in the initial step of microRNA (miRNA) biogenesis. Component of the microprocessor complex that is required to process primary miRNA transcripts (pri-miRNAs) to release precursor miRNA (pre-miRNA) in the nucleus. Within the microprocessor complex, DROSHA cleaves the 3' and 5' strands of a stem-loop in pri-miRNAs (processing center 11 bp from the dsRNA-ssRNA junction) to release hairpin-shaped pre-miRNAs that are subsequently cut by the cytoplasmic DICER to generate mature miRNAs. Involved also in pre-rRNA processing. Cleaves double-strand RNA and does not cleave single-strand RNA. Involved in the formation of GW bodies.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 3
>sp|Q5HZJ0|RNC_MOUSE Ribonuclease 3 OS=Mus musculus GN=Drosha PE=1 SV=1 Back     alignment and function description
>sp|O01326|RNC_CAEEL Ribonuclease 3 OS=Caenorhabditis elegans GN=drsh-1 PE=2 SV=2 Back     alignment and function description
>sp|Q61XX9|RNC_CAEBR Ribonuclease 3 OS=Caenorhabditis briggsae GN=drsh-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9CHD0|RNC_LACLA Ribonuclease 3 OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q030F9|RNC_LACLS Ribonuclease 3 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|C0MCR4|RNC_STRS7 Ribonuclease 3 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|A2RLZ8|RNC_LACLM Ribonuclease 3 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|A8AWC2|RNC_STRGC Ribonuclease 3 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|A3CP46|RNC_STRSV Ribonuclease 3 OS=Streptococcus sanguinis (strain SK36) GN=rnc PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
328777204 1290 PREDICTED: ribonuclease 3 [Apis mellifer 0.676 0.288 0.732 1e-169
380030082 1290 PREDICTED: ribonuclease 3-like [Apis flo 0.676 0.288 0.732 1e-169
383848560 1286 PREDICTED: ribonuclease 3-like [Megachil 0.676 0.289 0.730 1e-169
350416128 1306 PREDICTED: ribonuclease 3-like [Bombus i 0.676 0.284 0.730 1e-169
340711421 1306 PREDICTED: ribonuclease 3-like [Bombus t 0.676 0.284 0.730 1e-168
332017989 1326 Ribonuclease 3 [Acromyrmex echinatior] 0.687 0.285 0.725 1e-168
307208065 1328 Ribonuclease 3 [Harpegnathos saltator] 0.681 0.282 0.730 1e-168
345483564 1423 PREDICTED: ribonuclease 3-like [Nasonia 0.678 0.262 0.724 1e-166
242021933 1410 ribonuclease III, putative [Pediculus hu 0.707 0.275 0.704 1e-166
322803055 1447 hypothetical protein SINV_00854 [Solenop 0.681 0.259 0.722 1e-166
>gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera] Back     alignment and taxonomy information
 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/382 (73%), Positives = 331/382 (86%)

Query: 93   GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
            G+   +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 875  GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 934

Query: 153  HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
            H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF   L+KD E   K W+ YP+HPLQEQE
Sbjct: 935  HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYPKHPLQEQE 994

Query: 213  PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
            P GDRQW+    LL++L   E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 995  PTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1054

Query: 273  DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
            DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM  +A   NPK +LK
Sbjct: 1055 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1114

Query: 333  MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
             KDRADLLEAFLGA+Y+DKG+E C  FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1115 TKDRADLLEAFLGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1174

Query: 393  TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
            T+DGGEPDIP+YKVIE  GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K 
Sbjct: 1175 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1234

Query: 453  PSICPQLDHQKRVIAKSIELQK 474
              + PQLDHQKRVIAKS+++Q+
Sbjct: 1235 QDLFPQLDHQKRVIAKSMKMQQ 1256

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380030082|ref|XP_003698687.1| PREDICTED: ribonuclease 3-like [Apis florea] Back     alignment and taxonomy information
>gi|383848560|ref|XP_003699917.1| PREDICTED: ribonuclease 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350416128|ref|XP_003490851.1| PREDICTED: ribonuclease 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711421|ref|XP_003394274.1| PREDICTED: ribonuclease 3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345483564|ref|XP_001601748.2| PREDICTED: ribonuclease 3-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis] gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
FB|FBgn00267221327 drosha "drosha" [Drosophila me 0.692 0.287 0.695 5.1e-145
ZFIN|ZDB-GENE-070209-231289 rnasen "ribonuclease type III, 0.689 0.294 0.564 2.1e-116
UNIPROTKB|F1PJL5627 DROSHA "Uncharacterized protei 0.689 0.604 0.564 2.1e-116
UNIPROTKB|Q9NRR41374 DROSHA "Ribonuclease 3" [Homo 0.689 0.275 0.564 2.1e-116
MGI|MGI:12614251373 Drosha "drosha, ribonuclease t 0.689 0.276 0.564 2.1e-116
UNIPROTKB|E1BGY01368 DROSHA "Uncharacterized protei 0.689 0.277 0.564 2.7e-116
UNIPROTKB|F1SP381328 DROSHA "Uncharacterized protei 0.689 0.285 0.564 2.7e-116
UNIPROTKB|E9PTR31373 E9PTR3 "Uncharacterized protei 0.689 0.276 0.564 3.4e-116
UNIPROTKB|F1LQY51018 F1LQY5 "Uncharacterized protei 0.689 0.372 0.564 3.4e-116
UNIPROTKB|F1NQC91336 DROSHA "Uncharacterized protei 0.689 0.283 0.564 9.1e-116
FB|FBgn0026722 drosha "drosha" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
 Identities = 265/381 (69%), Positives = 313/381 (82%)

Query:    93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
             G+   +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct:   839 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 898

Query:   153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
             HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+  L++ +E     W   P+HPLQEQE
Sbjct:   899 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 958

Query:   213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
             P GDR  ++   +LK+L   E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct:   959 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1018

Query:   273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
             DTVLQLI S+YLY HFPEHHEGH        VNNRTQ+VVC+D+GMP +A   NPK DLK
Sbjct:  1019 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1078

Query:   333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
              KDRADLLEAFLGA+Y+DKG+  CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct:  1079 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1138

Query:   393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
             T+DGGEPDIP YKV+E  GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+  
Sbjct:  1139 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1198

Query:   453 PSICPQLDHQKRVIAKSIELQ 473
               + PQLDHQKRVIAKSI+ Q
Sbjct:  1199 RDLFPQLDHQKRVIAKSIKKQ 1219
GO:0031053 "primary miRNA processing" evidence=ISS;IMP
GO:0005634 "nucleus" evidence=ISS
GO:0004525 "ribonuclease III activity" evidence=ISS;NAS
GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS
GO:0016075 "rRNA catabolic process" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
GO:0030727 "germarium-derived female germ-line cyst formation" evidence=IMP
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP
ZFIN|ZDB-GENE-070209-23 rnasen "ribonuclease type III, nuclear" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJL5 DROSHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRR4 DROSHA "Ribonuclease 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1261425 Drosha "drosha, ribonuclease type III" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGY0 DROSHA "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SP38 DROSHA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTR3 E9PTR3 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQY5 F1LQY5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQC9 DROSHA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5HZJ0RNC_MOUSE3, ., 1, ., 2, 6, ., 30.59050.67630.2709yesN/A
Q9NRR4RNC_HUMAN3, ., 1, ., 2, 6, ., 30.59210.67450.2700yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.30.737
3rd Layer3.1.260.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
PRK00102229 PRK00102, rnc, ribonuclease III; Reviewed 1e-49
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 3e-47
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 7e-47
cd00593133 cd00593, RIBOc, RIBOc 4e-38
smart00535129 smart00535, RIBOc, Ribonuclease III family 9e-35
smart00535129 smart00535, RIBOc, Ribonuclease III family 4e-28
cd00593133 cd00593, RIBOc, RIBOc 4e-27
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 8e-24
PRK12371235 PRK12371, PRK12371, ribonuclease III; Reviewed 2e-21
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 8e-19
PRK00102229 PRK00102, rnc, ribonuclease III; Reviewed 2e-17
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 4e-17
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 2e-16
PRK14718 467 PRK14718, PRK14718, ribonuclease III; Provisional 2e-16
cd0004868 cd00048, DSRM, Double-stranded RNA binding motif 4e-15
PRK12372413 PRK12372, PRK12372, ribonuclease III; Reviewed 2e-14
smart0035867 smart00358, DSRM, Double-stranded RNA binding moti 3e-14
pfam0003566 pfam00035, dsrm, Double-stranded RNA binding motif 1e-12
PRK14718467 PRK14718, PRK14718, ribonuclease III; Provisional 1e-07
PRK12372413 PRK12372, PRK12372, ribonuclease III; Reviewed 7e-07
PRK12371235 PRK12371, PRK12371, ribonuclease III; Reviewed 1e-06
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information 
 Score =  170 bits (433), Expect = 1e-49
 Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 28/238 (11%)

Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
           K L+ L+   G  F    LL +  T RS    N  L  N+RLEFLGD VL+L+ S+YL+ 
Sbjct: 3   KDLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFK 62

Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---------KDR- 336
            FP+  EG LS LR++LV   + + +  ++G+  +         L +         + R 
Sbjct: 63  RFPDLDEGDLSKLRAALVREESLAEIARELGLGEY---------LLLGKGEEKSGGRRRP 113

Query: 337 ---ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRT 393
              AD  EA +GA+Y+D+G+EA  +F    F PR++   L     D K++LQ+  L    
Sbjct: 114 SILADAFEALIGAIYLDQGLEAARKFILRLFEPRIEEIDLGDLVKDYKTRLQE--LLQGR 171

Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
                  +P Y++++  GP + + +TV V    + L + TG+S ++AE  AAK AL+K
Sbjct: 172 GLP----LPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKK 225

Length = 229
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 550
KOG1817|consensus533 100.0
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 100.0
PRK12371235 ribonuclease III; Reviewed 100.0
PRK14718 467 ribonuclease III; Provisional 100.0
PRK12372413 ribonuclease III; Reviewed 100.0
PRK00102229 rnc ribonuclease III; Reviewed 100.0
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 100.0
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.95
KOG0701|consensus1606 99.93
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 99.92
smart00535129 RIBOc Ribonuclease III family. 99.92
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.92
PRK12371235 ribonuclease III; Reviewed 99.9
PRK14718467 ribonuclease III; Provisional 99.89
PRK12372413 ribonuclease III; Reviewed 99.89
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.88
KOG3769|consensus333 99.88
smart00535129 RIBOc Ribonuclease III family. 99.84
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.83
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.83
KOG1817|consensus533 99.83
PRK00102229 rnc ribonuclease III; Reviewed 99.82
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 99.81
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.81
PHA02701183 ORF020 dsRNA-binding PKR inhibitor; Provisional 99.44
cd0004868 DSRM Double-stranded RNA binding motif. Binding is 99.39
PHA03103183 double-strand RNA-binding protein; Provisional 99.38
smart0035867 DSRM Double-stranded RNA binding motif. 99.36
PF0003567 dsrm: Double-stranded RNA binding motif; InterPro: 99.26
KOG0701|consensus 1606 99.16
PF1470980 DND1_DSRM: double strand RNA binding domain from D 98.79
KOG3732|consensus339 98.78
KOG3732|consensus 339 98.57
KOG3769|consensus333 98.07
KOG2777|consensus 542 97.5
COG1939132 Ribonuclease III family protein [Replication, reco 97.45
COG1939132 Ribonuclease III family protein [Replication, reco 96.98
KOG4334|consensus 650 96.92
PF0336890 Dicer_dimer: Dicer dimerisation domain; InterPro: 94.31
PF14954252 LIX1: Limb expression 1 94.04
PF11469120 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 86.12
KOG2334|consensus477 80.26
>KOG1817|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-63  Score=503.24  Aligned_cols=393  Identities=55%  Similarity=0.894  Sum_probs=369.5

Q ss_pred             hchhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceecccCCcccchhhhhhhhH
Q psy3362          83 IYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA  162 (550)
Q Consensus        83 ~~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~~~~~~~~~~~~k~lA  162 (550)
                      +-.++||+++||++.+++++.++|..+|...||.|...|+.+|.|++++.+++++.++.|+....|.+.+.....+..+|
T Consensus       129 i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~yahg~dl~~~~E~Kha~a  208 (533)
T KOG1817|consen  129 IKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYDLCFETELKHAMA  208 (533)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence            66899999999999999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             HHHHHHhhhHhhcCChhHHHHHhhhccccChhhhhhhhccCCCCCCCcCCCCCccccccchhhHHHHHHHHHHhCCccCC
Q psy3362         163 NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNH  242 (550)
Q Consensus       163 D~~EAliGA~yld~G~~~~~~~l~~l~~~~~~~~~~~~~~~p~~~lq~~~P~~~r~~~~~~~~~~~l~~le~~lgy~F~~  242 (550)
                      ++|||+|||.|+|+|...+.......++..++.+.+.|..+|.+++|+..|..+|.+...+|-....-++|+++|..|.+
T Consensus       209 n~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~H  288 (533)
T KOG1817|consen  209 NCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIH  288 (533)
T ss_pred             HHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999998888887677778899999999999999999998887777767778899999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhHHHHHHHHcCccchh
Q psy3362         243 IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA  322 (550)
Q Consensus       243 ~~LL~~AlTh~S~~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~gL~~~i  322 (550)
                      +.++.+|||.+|...++...++|||||||||+||++++|++||.+||+.++|+|+.+|+.+|||++-++||..+|+++++
T Consensus       289 irlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~l  368 (533)
T KOG1817|consen  289 IRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYL  368 (533)
T ss_pred             HHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhh
Confidence            99999999999988666678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCc---cccchhhhhhHHHHHHhcccccCCcchhhhHHHhhcccchhhhhhccccCCccHHHHHHHhhcccccCCCC
Q psy3362         323 NIINPK---VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP  399 (550)
Q Consensus       323 ~~~~~~---~~~~~k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~~~~~~~~~~~Pk~~Lqe~~~~~~~l~~~~~  399 (550)
                      ..+...   .+.+.|..||+|||+|||+|+|.|++.+++|++.++.|.+.+++..+.|.+|++.||++|..+++..+..+
T Consensus       369 i~n~~~k~~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~ep  448 (533)
T KOG1817|consen  369 ITNFDLKDFQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEP  448 (533)
T ss_pred             hhCcchhhhhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCC
Confidence            987642   46788999999999999999999999999999999999999999999999999999999999988777888


Q ss_pred             CCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcccCCchhhhhHHhhhhhhhhcc
Q psy3362         400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKH  475 (550)
Q Consensus       400 ~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~~~~~~~~~~~~~~sf~~q~~  475 (550)
                      ..|.|++....||.+.+.|+|.|+++|+.+|+|.|+|.|.|+.+||+.||+.++..++...+++..+.++...++.
T Consensus       449 dip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~dF~k~~r~~~~~~~s~~k~~~  524 (533)
T KOG1817|consen  449 DIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMDFSKMARQKRPISESVRKDLS  524 (533)
T ss_pred             CCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999888888776654

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>KOG3769|consensus Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>KOG1817|consensus Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional Back     alignment and domain information
>cd00048 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>PHA03103 double-strand RNA-binding protein; Provisional Back     alignment and domain information
>smart00358 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 Back     alignment and domain information
>KOG3732|consensus Back     alignment and domain information
>KOG3732|consensus Back     alignment and domain information
>KOG3769|consensus Back     alignment and domain information
>KOG2777|consensus Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information
>KOG4334|consensus Back     alignment and domain information
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases Back     alignment and domain information
>PF14954 LIX1: Limb expression 1 Back     alignment and domain information
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function Back     alignment and domain information
>KOG2334|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
2khx_A85 Drosha Double-Stranded Rna Binding Motif Length = 8 1e-23
3n3w_A248 2.2 Angstrom Resolution Crystal Structure Of Nuclea 9e-19
2a11_A242 Crystal Structure Of Nuclease Domain Of Ribonuclase 4e-13
1o0w_A252 Crystal Structure Of Ribonuclease Iii (Tm1102) From 4e-12
3o2r_A170 Structural Flexibility In Region Involved In Dimer 2e-09
3o2r_D144 Structural Flexibility In Region Involved In Dimer 6e-08
1yyk_A221 Crystal Structure Of Rnase Iii From Aquifex Aeolicu 3e-07
1yz9_A221 Crystal Structure Of Rnase Iii Mutant E110q From Aq 7e-07
1rc7_A220 Crystal Structure Of Rnase Iii Mutant E110k From Aq 8e-07
1yyo_A221 Crystal Structure Of Rnase Iii Mutant E110k From Aq 9e-07
2ez6_A221 Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 1e-06
3rv0_A341 Crystal Structure Of K. Polysporus Dcr1 Without The 5e-06
2ffl_A 756 Crystal Structure Of Dicer From Giardia Intestinali 1e-05
3rv1_A246 Crystal Structure Of The N-Terminal And Rnase Iii D 4e-05
3c4t_A265 Structure Of Rnaseiiib And Dsrna Binding Domains Of 3e-04
1jfz_A154 Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En 3e-04
1i4s_A147 Crystal Structure Of Rnase Iii Endonuclease Domain 4e-04
>pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif Length = 85 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (268), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/74 (67%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
           NDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+    G SI
Sbjct: 1   NDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSI 59
Query: 438 QQAEMNAAKVALQK 451
           QQAEM AA  AL+K
Sbjct: 60  QQAEMGAAMDALEK 73
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Back     alignment and structure
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Back     alignment and structure
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Back     alignment and structure
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Back     alignment and structure
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Back     alignment and structure
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 Back     alignment and structure
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 Back     alignment and structure
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis Length = 756 Back     alignment and structure
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 Back     alignment and structure
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Back     alignment and structure
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 5e-56
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 1e-17
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 5e-56
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 1e-16
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 3e-54
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 2e-18
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 6e-51
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 2e-16
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 3e-49
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 7e-17
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 5e-49
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 3e-18
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 5e-45
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 2e-33
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 1e-17
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 8e-17
3o2r_A170 Ribonuclease III; structural genomics, center for 4e-33
3o2r_A170 Ribonuclease III; structural genomics, center for 5e-18
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 7e-31
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 2e-17
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 1e-28
1x49_A97 Interferon-induced, double-stranded RNA- activated 5e-14
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 1e-13
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 2e-13
2dix_A84 Interferon-inducible double stranded RNA- dependen 3e-13
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 4e-13
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 2e-12
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 5e-12
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 7e-12
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 8e-12
3p1x_A75 Interleukin enhancer-binding factor 3; structural 9e-12
1ekz_A76 DSRBDIII, maternal effect protein (staufen); struc 2e-11
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 4e-11
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 5e-07
2dmy_A97 Spermatid perinuclear RNA-binding protein; DSRM do 4e-11
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 5e-11
2b7t_A73 Double-stranded RNA-specific editase 1; RNA editin 6e-11
2yt4_A232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 2e-09
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 2e-09
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 7e-09
2l33_A91 Interleukin enhancer-binding factor 3; structural 1e-08
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 1e-08
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 3e-06
1whq_A99 RNA helicase A; double-stranded RNA binding domain 7e-08
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 1e-07
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1t4o_A117 Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro 2e-06
1t4n_A94 Ribonuclease III; DSRBD, RNA-binding, hydrolase; N 1e-04
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 4e-04
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
 Score =  187 bits (477), Expect = 5e-56
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 18/255 (7%)

Query: 203 YPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL 262
           +  H        G      QS  +K ++ LE S    F    LL    T +S   +    
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--- 58

Query: 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA 322
            +N+RLEFLGD VL L+  +YL++ F +  EG LS LR++LVN ++ + + N + +  F 
Sbjct: 59  -NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDF- 116

Query: 323 NIINPKVDLKMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE 376
            I+    +     +      +D LEA +GA++++ G E  +                   
Sbjct: 117 -ILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKIL 175

Query: 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
             D K+KLQ+               P Y+ +   GP + + + +A+    + LA+A   S
Sbjct: 176 IKDYKTKLQEITQGKIG------QTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGS 229

Query: 437 IQQAEMNAAKVALQK 451
            ++A+  AAK+AL+K
Sbjct: 230 KKEAQQMAAKIALEK 244
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114 Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 Back     alignment and structure
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 Back     alignment and structure
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97 Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 Back     alignment and structure
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99 Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Length = 117 Back     alignment and structure
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94 Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Length = 138 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 100.0
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 100.0
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 100.0
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 100.0
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 100.0
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 100.0
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 100.0
3o2r_A170 Ribonuclease III; structural genomics, center for 100.0
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.97
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.93
3o2r_A170 Ribonuclease III; structural genomics, center for 99.9
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 99.89
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 99.87
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 99.86
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 99.85
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.85
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 99.84
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.84
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.79
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.76
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.7
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.67
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 99.64
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 99.64
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 99.64
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 99.63
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 99.63
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 99.61
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 99.61
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 99.6
2dix_A84 Interferon-inducible double stranded RNA- dependen 99.59
1ekz_A76 DSRBDIII, maternal effect protein (staufen); struc 99.58
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 99.57
2b7t_A73 Double-stranded RNA-specific editase 1; RNA editin 99.55
1t4n_A94 Ribonuclease III; DSRBD, RNA-binding, hydrolase; N 99.55
1x49_A97 Interferon-induced, double-stranded RNA- activated 99.54
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 99.53
2dmy_A97 Spermatid perinuclear RNA-binding protein; DSRM do 99.53
1whq_A99 RNA helicase A; double-stranded RNA binding domain 99.52
2l33_A91 Interleukin enhancer-binding factor 3; structural 99.51
1t4o_A117 Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro 99.51
1x48_A88 Interferon-induced, double-stranded RNA- activated 99.49
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 99.45
1uil_A113 Double-stranded RNA-binding motif; structural geno 99.45
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 99.45
3p1x_A75 Interleukin enhancer-binding factor 3; structural 99.41
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 99.39
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 99.29
2yt4_A232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 99.24
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 98.98
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 98.95
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 98.88
2yt4_A232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 98.82
2db2_A119 KIAA0890 protein; DSRM domain, structural genomics 94.43
2kou_A102 Dicer-like protein 4; ATP-binding, endonuclease, h 93.77
1ztd_A133 Hypothetical protein PFU-631545-001; structural ge 85.03
3htx_A 950 HEN1; HEN1, small RNA methyltransferase, protein-R 84.43
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
Probab=100.00  E-value=3e-51  Score=461.32  Aligned_cols=270  Identities=23%  Similarity=0.319  Sum_probs=227.5

Q ss_pred             hhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceecccCCcccchhhhhhhhHHH
Q psy3362          85 RMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC  164 (550)
Q Consensus        85 ~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~~~~~~~~~~~~k~lAD~  164 (550)
                      +|+||||+||+||+++++++||.+||+.+||+||.+|+.+|||++|+++|+++||++||+.++++.     ..+|++||+
T Consensus       333 nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~ilaD~  407 (756)
T 2qvw_A          333 VFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKTWADM  407 (756)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----CcccHHHhH
Confidence            899999999999999999999999999999999999999999999999999999999999998764     347999999


Q ss_pred             HHHHhhhHhhc-CChhHHHHHhhhccccChhhh-----------------------------------------------
Q psy3362         165 FEALMGALFLD-GGIDVADQVFSSVLYKDNEVR-----------------------------------------------  196 (550)
Q Consensus       165 ~EAliGA~yld-~G~~~~~~~l~~l~~~~~~~~-----------------------------------------------  196 (550)
                      |||+|||+|+| +|++.+++|+..++.+...+.                                               
T Consensus       408 ~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~a  487 (756)
T 2qvw_A          408 YEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRV  487 (756)
T ss_dssp             HHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSHH
T ss_pred             HHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccchhhHH
Confidence            99999999999 999999999988765432110                                               


Q ss_pred             ---------------hhhhc------------cCCCCC----------------------C-------------------
Q psy3362         197 ---------------FKQWM------------YYPQHP----------------------L-------------------  208 (550)
Q Consensus       197 ---------------~~~~~------------~~p~~~----------------------l-------------------  208 (550)
                                     +..|.            ..|...                      +                   
T Consensus       488 a~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~~  567 (756)
T 2qvw_A          488 STMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVLY  567 (756)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECCT
T ss_pred             HHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceeccccccccccccccccccccCCchhh
Confidence                           00121            001000                      0                   


Q ss_pred             ----CcCCCCCcccc--ccchh-hHHHHHHHHHHhCCccCC--------------------------HHHHHHhhccCCC
Q psy3362         209 ----QEQEPDGDRQW--VEQSP-LLKQLQYLEYSSGVIFNH--------------------------IRLLARVFTTRSM  255 (550)
Q Consensus       209 ----q~~~P~~~r~~--~~~~~-~~~~l~~le~~lgy~F~~--------------------------~~LL~~AlTh~S~  255 (550)
                          +.+.|....++  .|..+ ....+..+|++|||+|+|                          +.||.+||||+| 
T Consensus       568 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S-  646 (756)
T 2qvw_A          568 IYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV-  646 (756)
T ss_dssp             TTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG-
T ss_pred             hhcccccCccccccccccccchhhhhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc-
Confidence                00001000000  01111 234589999999999999                          899999999999 


Q ss_pred             CCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhHHHHHHHHcC--ccchhhccCCccccch
Q psy3362         256 GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG--MPFFANIINPKVDLKM  333 (550)
Q Consensus       256 ~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~g--L~~~i~~~~~~~~~~~  333 (550)
                               |||||||||+||+++|++|||.+||++++|.|+.+|+.+|+|++|+.+|+++|  |+++++.++++...++
T Consensus       647 ---------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~~~~  717 (756)
T 2qvw_A          647 ---------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQPDS  717 (756)
T ss_dssp             ---------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCCTTC
T ss_pred             ---------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhcCCc
Confidence                     89999999999999999999999999999999999999999999999999999  9999999988777889


Q ss_pred             hhhhhHHHHHHhcccccCCcchhhhHHHhhcccchh
Q psy3362         334 KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQ  369 (550)
Q Consensus       334 k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~  369 (550)
                      |++||+|||+|||||+|+|++.+++|+.+++.|.++
T Consensus       718 kilaD~~EAliGAiylD~G~~~a~~~v~~~~~~~l~  753 (756)
T 2qvw_A          718 KVYGDTFEAILAAILLACGEEAAGAFVREHVLPQVV  753 (756)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTGGGCC
T ss_pred             cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999988764
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Back     alignment and structure
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Back     alignment and structure
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Back     alignment and structure
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Back     alignment and structure
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Back     alignment and structure
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Back     alignment and structure
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2 Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 550
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 9e-18
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 6e-12
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 2e-17
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 1e-08
d2nuga1148 a.149.1.1 (A:3-150) RNase III endonuclease catalyt 1e-14
d2nuga1148 a.149.1.1 (A:3-150) RNase III endonuclease catalyt 1e-04
d1o0wa269 d.50.1.1 (A:168-236) RNase III, C-terminal domain 3e-13
d2nuga268 d.50.1.1 (A:151-218) RNase III, C-terminal domain 3e-11
d1x47a185 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie 1e-10
d2b7va171 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R 3e-09
d1qu6a190 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p 1e-08
d2dmya184 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin 2e-08
d1x49a185 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p 1e-07
d2b7ta173 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R 2e-07
d1di2a_69 d.50.1.1 (A:) Double-stranded RNA-binding protein 4e-07
d2dixa173 d.50.1.1 (A:7-79) Interferon-inducible double stra 8e-07
d1x48a176 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p 1e-06
d1ekza_76 d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros 1e-06
d1whna_128 d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, 2e-06
d1qu6a289 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase 2e-06
d1t4oa_81 d.50.1.1 (A:) RNase III, C-terminal domain {Baker' 3e-06
d2cpna176 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu 4e-06
d1whqa_99 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 4e-06
d1uila_113 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 1e-04
d1uhza_89 d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul 2e-04
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: Hypothetical protein BC0111
species: Bacillus cereus [TaxId: 1396]

 Score = 77.3 bits (190), Expect = 9e-18
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-- 321
           ++  L ++GD V +     +L           L  L +S V+ + Q+ V   +    F  
Sbjct: 7   NSLALAYMGDAVYEQYIRYHLLQKGKV-RPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 65

Query: 322 --------------ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCF 364
                         +  +    D++    +   EA +G  ++    E  ++      
Sbjct: 66  EEEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 122
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73 Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 99.98
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 99.98
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 99.89
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 99.86
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.81
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.77
d1o0wa269 RNase III, C-terminal domain {Thermotoga maritima 99.64
d2nuga268 RNase III, C-terminal domain {Aquifex aeolicus [Ta 99.58
d2dixa173 Interferon-inducible double stranded RNA-dependent 99.56
d1di2a_69 Double-stranded RNA-binding protein A, second dsRB 99.56
d2cpna176 TAR RNA-binding protein 2 {Human (Homo sapiens) [T 99.56
d1uhza_89 staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 99.52
d1x49a185 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 99.5
d1qu6a190 dsRNA-dependent protein kinase pkr {Human (Homo sa 99.5
d1ekza_76 Staufen, domain III {Fruit fly (Drosophila melanog 99.49
d1x47a185 Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1x48a176 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 99.46
d2b7va171 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 99.44
d1qu6a289 dsRNA-dependent protein kinase pkr {Human (Homo sa 99.4
d1whqa_99 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.39
d1uila_113 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.37
d2dmya184 Spermatid perinuclear RNA-binding protein {Human ( 99.29
d2b7ta173 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 99.29
d1t4oa_81 RNase III, C-terminal domain {Baker's yeast (Sacch 99.26
d1whna_128 tRNA-dihydrouridine synthase 2-like, Dus2l (231001 99.24
d1ztda1124 Hypothetical protein PF0609 {Pyrococcus furiosus [ 82.27
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure