Psyllid ID: psy3370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgkgeeeeeeeeeeeeeeEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKkkkkkkknnpvVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFfakpftfq
Flexible Loop (DISEMBL)
mgkgeeeeeeeeeeeeeeeeeeedlHMCLNYLamkkkkkkkkkkkkkkkkkkkkknnpvvYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ
Low Complexity Region (SEG)
MGKGeeeeeeeeeeeeeeeeeeeDLHMCLNYLAMkkkkkkkkkkkkkkkkkkkkkNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ
Disordered region (IsUnstruct)
**********************************************************VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT**
Disordered Region (DISOPRED)
**************************MCLN************************KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF*
Disordered Region (DISEMBL)
************************LHMCLNYLAMK********************NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ
Disordered Region (DISPRO)
*******************EEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPF***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxMCLNYxxxxxxxxxxxxxxxxxxxxxxxxxxPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q7Q5D4	377	Adenosine 3'-phospho 5'-p	yes	N/A	0.482	0.148	0.75	6e-19
Q17CE7	382	Adenosine 3'-phospho 5'-p	N/A	N/A	0.448	0.136	0.788	3e-18
Q5R831	401	Adenosine 3'-phospho 5'-p	yes	N/A	0.517	0.149	0.688	1e-17
Q9H1N7	401	Adenosine 3'-phospho 5'-p	yes	N/A	0.517	0.149	0.688	1e-17
Q922Q5	369	Adenosine 3'-phospho 5'-p	yes	N/A	0.517	0.162	0.672	5e-17
Q9VVD9	396	Adenosine 3'-phospho 5'-p	yes	N/A	0.465	0.136	0.666	6e-15
Q29EY2	392	Adenosine 3'-phospho 5'-p	yes	N/A	0.465	0.137	0.666	9e-15
Q61LC0	363	Adenosine 3'-phospho 5'-p	N/A	N/A	0.534	0.170	0.612	1e-14
Q20787	364	Adenosine 3'-phospho 5'-p	yes	N/A	0.534	0.170	0.596	7e-14

>sp|Q7Q5D4|S35B3_ANOGA Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Anopheles gambiae GN=Papst2 PE=3 SV=4

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 49/56 (87%)

Query: 61  YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
           Y YA LFS++GYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT Q
Sbjct: 265 YGYAFLFSLTGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFTIQ 320

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).
Anopheles gambiae (taxid: 7165)

>sp|Q17CE7|S35B3_AEDAE Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Aedes aegypti GN=Papst2 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%)

Query: 63  YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT 114
           YA LFS+SGYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT
Sbjct: 273 YAFLFSLSGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFT 324

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Aedes aegypti (taxid: 7159)

>sp|Q5R831|S35B3_PONAB Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Pongo abelii GN=SLC35B3 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 57  NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct: 292 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTF 351

Query: 116 Q 116
           Q
Sbjct: 352 Q 352

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Compensates for the insufficient expression of SLC35B2/PAPST1 during the synthesis of sulfated glycoconjugates in the colon.

Pongo abelii (taxid: 9601)

>sp|Q9H1N7|S35B3_HUMAN Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Homo sapiens GN=SLC35B3 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 57  NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct: 292 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTF 351

Query: 116 Q 116
           Q
Sbjct: 352 Q 352

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Compensates for the insufficient expression of SLC35B2/PAPST1 during the synthesis of sulfated glycoconjugates in the colon.

Homo sapiens (taxid: 9606)

>sp|Q922Q5|S35B3_MOUSE Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Mus musculus GN=Slc35b3 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 57  NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+T+VLSF+FFAKPFTF
Sbjct: 260 NPVGTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTF 319

Query: 116 Q 116
           Q
Sbjct: 320 Q 320

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Compensates for the insufficient expression of SLC35B2/PAPST1 during the synthesis of sulfated glycoconjugates in the colon.

Mus musculus (taxid: 10090)

>sp|Q9VVD9|S35B3_DROME Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Drosophila melanogaster GN=Papst2 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query: 63  YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
           Y  LFS+SGYLG+Q VL LV++ GA +A TVTT RKAVTI  SFV F+KPFT Q
Sbjct: 292 YGFLFSLSGYLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQ 345

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Drosophila melanogaster (taxid: 7227)

>sp|Q29EY2|S35B3_DROPS Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Drosophila pseudoobscura pseudoobscura GN=Papst2 PE=3 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query: 63  YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
           Y  LFS+SGYLG+Q VL LV++ GA +A TVTT RKAVTI  SFV F+KPFT Q
Sbjct: 288 YGFLFSLSGYLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTVQ 341

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q61LC0|S35B3_CAEBR Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Caenorhabditis briggsae GN=pst-2 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query: 55  KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT 114
           +N+   + YAL+FS  GYLGV VVLT +K  GA VAVTVTT RKA+TI+LSF+ F+KPFT
Sbjct: 252 ENSWKTFGYALIFSFLGYLGVNVVLTHIKVFGALVAVTVTTLRKALTIILSFLLFSKPFT 311

Query: 115 FQ 116
            +
Sbjct: 312 IE 313

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q20787|S35B3_CAEEL Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Caenorhabditis elegans GN=pst-2 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query: 55  KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT 114
           +N+   + YAL+ S  GYLGV VVLT +K  GA VAVTVTT RKA+TI+LSF+ F+KPFT
Sbjct: 252 ENSWKTFGYALILSCLGYLGVNVVLTHIKVFGALVAVTVTTLRKALTIILSFMLFSKPFT 311

Query: 115 FQ 116
            +
Sbjct: 312 IE 313

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
270004524	363	hypothetical protein TcasGA2_TC003883 [T	0.525	0.168	0.754	4e-21
156552906	365	PREDICTED: adenosine 3'-phospho 5'-phosp	0.482	0.153	0.785	6e-20
332373632	179	unknown [Dendroctonus ponderosae]	0.5	0.324	0.758	9e-18
158295962	377	AGAP006509-PA [Anopheles gambiae str. PE	0.482	0.148	0.75	3e-17
170043411	390	UDP-galactose transporter [Culex quinque	0.448	0.133	0.788	1e-16
157106712	382	UDP-galactose transporter [Aedes aegypti	0.448	0.136	0.788	1e-16
312381296	317	hypothetical protein AND_06432 [Anophele	0.517	0.189	0.721	2e-16
444731396	445	Adenosine 3'-phospho 5'-phosphosulfate t	0.646	0.168	0.565	3e-16
426351556	401	PREDICTED: adenosine 3'-phospho 5'-phosp	0.517	0.149	0.688	5e-16
4680677	382	CGI-19 protein [Homo sapiens]	0.517	0.157	0.688	5e-16

>gi|270004524|gb|EFA00972.1| hypothetical protein TcasGA2_TC003883 [Tribolium castaneum]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 56  NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           N   +Y YAL+FS++GYLG+Q+VLTLV+TCGAF AVTVTTCRKAVTI++SFVFF+KPFTF
Sbjct: 246 NPKKLYGYALIFSLTGYLGIQIVLTLVRTCGAFAAVTVTTCRKAVTIIISFVFFSKPFTF 305

Query: 116 Q 116
           Q
Sbjct: 306 Q 306

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552906|ref|XP_001601459.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2-like [Nasonia vitripennis]

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 53/56 (94%)

Query: 61  YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
           Y YALLFS+SGYLG+Q+VL+LV++CGAFVA TVTTCRKAVTI++SF+FF KPFTFQ
Sbjct: 258 YGYALLFSLSGYLGIQIVLSLVQSCGAFVAATVTTCRKAVTIIISFLFFYKPFTFQ 313

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373632|gb|AEE61957.1| unknown [Dendroctonus ponderosae]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 51/58 (87%)

Query: 59  VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
           V Y YA +FS++GYLG+QVVLTLV+T GAF AVTVTT RKAVTIV+SFVFF+KPFT Q
Sbjct: 65  VTYGYAFIFSVTGYLGIQVVLTLVRTTGAFAAVTVTTMRKAVTIVISFVFFSKPFTLQ 122

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295962|ref|XP_316536.4| AGAP006509-PA [Anopheles gambiae str. PEST] gi|160177603|sp|Q7Q5D4.4|S35B3_ANOGA RecName: Full=Adenosine 3'-phospho 5'-phosphosulfate transporter 2; AltName: Full=PAPS transporter 2; AltName: Full=Solute carrier family 35 member B3 homolog gi|157016284|gb|EAA11308.4| AGAP006509-PA [Anopheles gambiae str. PEST]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 49/56 (87%)

Query: 61  YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
           Y YA LFS++GYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT Q
Sbjct: 265 YGYAFLFSLTGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFTIQ 320

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043411|ref|XP_001849382.1| UDP-galactose transporter [Culex quinquefasciatus] gi|167866755|gb|EDS30138.1| UDP-galactose transporter [Culex quinquefasciatus]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%)

Query: 63  YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT 114
           YA LFS+SGYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT
Sbjct: 279 YAFLFSLSGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFT 330

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106712|ref|XP_001649448.1| UDP-galactose transporter [Aedes aegypti] gi|122094943|sp|Q17CE7.1|S35B3_AEDAE RecName: Full=Adenosine 3'-phospho 5'-phosphosulfate transporter 2; AltName: Full=PAPS transporter 2; AltName: Full=Solute carrier family 35 member B3 homolog gi|108879779|gb|EAT44004.1| AAEL004594-PA [Aedes aegypti]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%)

Query: 63  YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT 114
           YA LFS+SGYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT
Sbjct: 273 YAFLFSLSGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFT 324

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381296|gb|EFR27074.1| hypothetical protein AND_06432 [Anopheles darlingi]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 52/61 (85%), Gaps = 1/61 (1%)

Query: 57  NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           +PV  Y YA LFS++GYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT 
Sbjct: 257 HPVETYGYAFLFSLTGYLGIQIVLTLVRTCGAPMAATVTTARKAVTIALSFVFFSKPFTI 316

Query: 116 Q 116
           Q
Sbjct: 317 Q 317

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444731396|gb|ELW71750.1| Adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Tupaia chinensis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 42  KKKKKKKKKKKKKKNNPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAV 100
           ++K  K       + NP+  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+
Sbjct: 294 QEKAMKLHNASNSEMNPIRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAM 353

Query: 101 TIVLSFVFFAKPFTFQ 116
           TIVLSF+FFAKPFTFQ
Sbjct: 354 TIVLSFIFFAKPFTFQ 369

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426351556|ref|XP_004043301.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 1 [Gorilla gorilla gorilla] gi|426351558|ref|XP_004043302.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2 [Gorilla gorilla gorilla] gi|426351560|ref|XP_004043303.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 3 [Gorilla gorilla gorilla]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 57  NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct: 292 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTF 351

Query: 116 Q 116
           Q
Sbjct: 352 Q 352

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4680677|gb|AAD27728.1|AF132953_1 CGI-19 protein [Homo sapiens]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 57  NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
           NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct: 292 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTF 351

Query: 116 Q 116
           Q
Sbjct: 352 Q 352

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
UNIPROTKB|Q7Q5D4	377	Papst2 "Adenosine 3'-phospho 5	0.482	0.148	0.75	1.4e-17
UNIPROTKB|Q17CE7	382	Papst2 "Adenosine 3'-phospho 5	0.491	0.149	0.741	4.2e-17
UNIPROTKB|Q9H1N7	401	SLC35B3 "Adenosine 3'-phospho	0.517	0.149	0.688	1.8e-16
UNIPROTKB|F1RV99	369	SLC35B3 "Uncharacterized prote	0.517	0.162	0.688	2.3e-16
RGD|1307183	369	Slc35b3 "solute carrier family	0.517	0.162	0.688	3.8e-16
UNIPROTKB|E2RJI8	369	SLC35B3 "Uncharacterized prote	0.517	0.162	0.672	4.9e-16
MGI|MGI:1913978	369	Slc35b3 "solute carrier family	0.517	0.162	0.672	4.9e-16
UNIPROTKB|E1BLS0	430	SLC35B3 "Uncharacterized prote	0.517	0.139	0.655	1.7e-15
UNIPROTKB|F1P4W7	387	SLC35B3 "Uncharacterized prote	0.517	0.155	0.655	2.1e-15
ZFIN|ZDB-GENE-060312-46	386	slc35b3 "solute carrier family	0.482	0.145	0.696	3.5e-15

UNIPROTKB|Q7Q5D4 Papst2 "Adenosine 3'-phospho 5'-phosphosulfate transporter 2" [Anopheles gambiae (taxid:7165)]

 Score = 218 (81.8 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 42/56 (75%), Positives = 49/56 (87%)

Query:    61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
             Y YA LFS++GYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT Q
Sbjct:   265 YGYAFLFSLTGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFTIQ 320

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0046963 "3'-phosphoadenosine 5'-phosphosulfate transport" evidence=ISS

GO:0046964 "3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q17CE7 Papst2 "Adenosine 3'-phospho 5'-phosphosulfate transporter 2" [Aedes aegypti (taxid:7159)]

 Score = 214 (80.4 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 43/58 (74%), Positives = 50/58 (86%)

Query:    58 PV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFT 114
             PV  + YA LFS+SGYLG+Q+VLTLV+TCGA +A TVTT RKAVTI LSFVFF+KPFT
Sbjct:   267 PVETFGYAFLFSLSGYLGIQIVLTLVRTCGAPLAATVTTARKAVTIALSFVFFSKPFT 324

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0046963 "3'-phosphoadenosine 5'-phosphosulfate transport" evidence=ISS

GO:0046964 "3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q9H1N7 SLC35B3 "Adenosine 3'-phospho 5'-phosphosulfate transporter 2" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 42/61 (68%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct:   292 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTF 351

Query:   116 Q 116
             Q
Sbjct:   352 Q 352

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F1RV99 SLC35B3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/61 (68%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct:   260 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTF 319

Query:   116 Q 116
             Q
Sbjct:   320 Q 320

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1307183 Slc35b3 "solute carrier family 35, member B3" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 42/61 (68%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct:   260 NPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTF 319

Query:   116 Q 116
             Q
Sbjct:   320 Q 320

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RJI8 SLC35B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 4.9e-16, P = 4.9e-16
 Identities = 41/61 (67%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             NP+  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct:   260 NPIQTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFMFFAKPFTF 319

Query:   116 Q 116
             Q
Sbjct:   320 Q 320

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1913978 Slc35b3 "solute carrier family 35, member B3" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 4.9e-16, P = 4.9e-16
 Identities = 41/61 (67%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             NPV  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+T+VLSF+FFAKPFTF
Sbjct:   260 NPVGTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTF 319

Query:   116 Q 116
             Q
Sbjct:   320 Q 320

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1BLS0 SLC35B3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 40/61 (65%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             +P+  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct:   321 DPIRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTF 380

Query:   116 Q 116
             Q
Sbjct:   381 Q 381

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1P4W7 SLC35B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 199 (75.1 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 40/61 (65%), Positives = 49/61 (80%)

Query:    57 NPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
             +P+  Y YA LFS++GY G+  VL L+K  GA +AVTVTT RKA+TIVLSF+FFAKPFTF
Sbjct:   278 HPIQTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTF 337

Query:   116 Q 116
             Q
Sbjct:   338 Q 338

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-060312-46 slc35b3 "solute carrier family 35, member B3" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 39/56 (69%), Positives = 46/56 (82%)

Query:    61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116
             Y YA LFS++GY G+  VL L+K  GA VAVTVTT RKA+TIVLSF+FF+KPFTFQ
Sbjct:   282 YGYAFLFSLTGYFGISFVLALIKLFGALVAVTVTTGRKAMTIVLSFLFFSKPFTFQ 337

GO:0055085 "transmembrane transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R831	S35B3_PONAB	No assigned EC number	0.6885	0.5172	0.1496	yes	N/A
Q20787	S35B3_CAEEL	No assigned EC number	0.5967	0.5344	0.1703	yes	N/A
Q922Q5	S35B3_MOUSE	No assigned EC number	0.6721	0.5172	0.1626	yes	N/A
Q9H1N7	S35B3_HUMAN	No assigned EC number	0.6885	0.5172	0.1496	yes	N/A
Q9VVD9	S35B3_DROME	No assigned EC number	0.6666	0.4655	0.1363	yes	N/A
Q7Q5D4	S35B3_ANOGA	No assigned EC number	0.75	0.4827	0.1485	yes	N/A
Q29EY2	S35B3_DROPS	No assigned EC number	0.6666	0.4655	0.1377	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
pfam08449	303	pfam08449, UAA, UAA transporter family	5e-20
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	4e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	9e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	2e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	3e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	5e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	6e-04
pfam12446	133	pfam12446, DUF3682, Protein of unknown function (D	7e-04
pfam01056	329	pfam01056, Myc_N, Myc amino-terminal region	7e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.001
pfam01056	329	pfam01056, Myc_N, Myc amino-terminal region	0.001
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.001
cd11486	635	cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporte	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.002
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
pfam12446	133	pfam12446, DUF3682, Protein of unknown function (D	0.002
cd08693	173	cd08693, C2_PI3K_class_I_beta_delta, C2 domain pre	0.002
pfam12619	145	pfam12619, MCM2_N, Mini-chromosome maintenance pro	0.002
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.003
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.003
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.003
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.003
pfam05432	291	pfam05432, BSP_II, Bone sialoprotein II (BSP-II)	0.003
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	0.003
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.003
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	0.003
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.003
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.003
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.003
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.004
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	0.004
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.004
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	0.004

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 81.9 bits (203), Expect = 5e-20
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 56  NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
            +P V  Y LL S++ Y+G   V  L+   GA     VTT RK V+++LS + F  P T 
Sbjct: 220 RHPSVLFYLLLNSLTQYVGQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTL 279

Query: 116 Q 116
           Q
Sbjct: 280 Q 280

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 45.8 bits (108), Expect = 9e-07
 Identities = 20/23 (86%), Positives = 21/23 (91%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEED 24
           G  EEEEEEEEEEEEEEEEEEE+
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEE 883

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 5   EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKK 38
           EEEEEEEEEEEEEEEEEE +  + L +   ++K+
Sbjct: 872 EEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 869 EEEEEEEEEEEEEEEEEEEE 888

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 866 EEEEEEEEEEEEEEEEEEEE 885

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 871 EEEEEEEEEEEEEEEEEEEN 890

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 867 EEEEEEEEEEEEEEEEEEEE 886

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 868 EEEEEEEEEEEEEEEEEEEE 887

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 870 EEEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
           EEEEEEEEEEEEEEEEEEE+
Sbjct: 865 EEEEEEEEEEEEEEEEEEEE 884

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 19/23 (82%), Positives = 20/23 (86%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEED 24
           G   EEEEEEEEEEEEEEEEEE+
Sbjct: 860 GGDSEEEEEEEEEEEEEEEEEEE 882

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 17/23 (73%), Positives = 19/23 (82%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEED 24
             G + EEEEEEEEEEEEEEEE+
Sbjct: 858 SDGGDSEEEEEEEEEEEEEEEEE 880

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 5   EEEEEEEEEEEEEEEEEEEDLHMCLN 30
           EEEEEEEEE  EEEEEEEE+      
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFE 331

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 16/22 (72%), Positives = 16/22 (72%)

Query: 4   GEEEEEEEEEEEEEEEEEEEDL 25
            EEEEE  EEEEEEEEEEE   
Sbjct: 309 EEEEEEVPEEEEEEEEEEERTF 330

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/20 (80%), Positives = 17/20 (85%)

Query: 5   EEEEEEEEEEEEEEEEEEED 24
            EEEEEEEEE  EEEEEEE+
Sbjct: 305 PEEEEEEEEEVPEEEEEEEE 324

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 35  KKKKKKKKKKKKKKKKKKKKKN 56
            +KK+K+K+K K KK+ +  KN
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 32  LAMKKKKKKKKKKKKKKKKKKKKKNN 57
           LA + +KK+K+K+K K KK+ +   N
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
              EEEE EEE  +E E+E+             + K + K+KKK++  K K +K  P
Sbjct: 94  SDDEEEETEEESTDETEQEDPP-----------ETKTESKEKKKREVPKPKTEKEKP 139

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
            K E+EEEEEEE E EE +EEE +   L     K K++K+++ ++K+K+  K++  
Sbjct: 97  DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 5  EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
          E  +EEEEEE+EE++EEEE        +  +++K++KKKK KK K+   
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82

Length = 529

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 17/22 (77%), Positives = 19/22 (86%)

Query: 3   KGEEEEEEEEEEEEEEEEEEED 24
           K EEEE+E+EEEEEEEEE EE 
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEP 368

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 16/19 (84%), Positives = 16/19 (84%)

Query: 5   EEEEEEEEEEEEEEEEEEE 23
           E EEEEEEEEE  EEEEEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEE 322

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682)

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEED 24
           G G   +EEEEEEEE E++++ D
Sbjct: 90  GTGHTRQEEEEEEEENEKQQQSD 112

This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length. Length = 133

>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 4   GEEEEEEEEEEEEEEEEEEEDL 25
           G + E EE+EEEEEEEEEEE++
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEI 244

The myc family belongs to the basic helix-loop-helix leucine zipper class of transcription factors, see pfam00010. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication. Mutations in the C-terminal 20 residues of this domain cause unique changes in the induction of apoptosis, transformation, and G2 arrest. Length = 329

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 34  MKKKKKKKKKKKKKKKKKKKKKNNP 58
            K+K+K K KK+ +  K   K+  P
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKP 428

Length = 434

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 4   GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
           G +++E+EEEEEEE E EE D    ++ L  K+  K K++K+++ ++K+K+   
Sbjct: 95  GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 17/23 (73%), Positives = 18/23 (78%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEED 24
           G   E EE+EEEEEEEEEEEE D
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEID 245

The myc family belongs to the basic helix-loop-helix leucine zipper class of transcription factors, see pfam00010. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication. Mutations in the C-terminal 20 residues of this domain cause unique changes in the induction of apoptosis, transformation, and G2 arrest. Length = 329

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 10/54 (18%), Positives = 32/54 (59%)

Query: 1   MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
               +EE +EE+EE  + E++E+D     +     +++  ++++++++ ++K+ 
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute binding domain

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 5   EEEEEEEEEEEEEEEEEEEDLHMCLN----YLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
           ++  E+E+E E E +EE +    C      +    + K  K  ++++   K K  +    
Sbjct: 550 DDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMKMTDTSEK 609

Query: 61  YIYALLFSISGYLGVQVVLTLVKTCGAFVA 90
            ++  + +I+G     ++LT+   C AF A
Sbjct: 610 PLWRNVVNINGI----ILLTVAVFCHAFFA 635

Human SGLT1 (hSGLT1) is a high-affinity/low-capacity glucose transporter, which can also transport galactose. In the transport mechanism, two Na+ ions first bind to the extracellular side of the transporter and induce a conformational change in the glucose binding site. This results in an increased affinity for glucose. A second conformational change in the transporter follows, bringing the Na+ and glucose binding sites to the inner surface of the membrane. Glucose is then released, followed by the Na+ ions. In the process, hSGLT1 is also able to transport water and urea and may be a major pathway for transport of these across the intestinal brush-border membrane. hSGLT1 is encoded by the SLC5A1 gene and expressed mostly in the intestine, but also in the trachea, kidney, heart, brain, testis, and prostate. The WHO/UNICEF oral rehydration solution (ORS) for the treatment of secretory diarrhea contains salt and glucose. The glucose, along with sodium ions, is transported by hSGLT1 and water is either co-transported along with these or follows by osmosis. Mutations in SGLT1 are associated with intestinal glucose galactose malabsorption (GGM). Up-regulation of intestinal SGLT1 may protect against enteric infections. SGLT1 is expressed in colorectal, head and neck, and prostate tumors. Epidermal growth factor receptor (EGFR) functions in cell survival by stabilizing SGLT1, and thereby maintaining intracellular glucose levels. SGLT1 is predicted to have 14 membrane-spanning regions. This subgroup belongs to the solute carrier 5 (SLC5)transporter family. Length = 635

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEED 24
           G  +  + EEEEEEEEEEEEEE+
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEE 878

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 15/19 (78%), Positives = 15/19 (78%)

Query: 5   EEEEEEEEEEEEEEEEEEE 23
            E EEEEEEEEE  EEEEE
Sbjct: 303 PEPEEEEEEEEEVPEEEEE 321

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 29  LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
           L   A KK+K+K+K K KK+ +  K  
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNI 422

Length = 434

>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682)

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEE 23
              +EEEEEEEE E++++ +E 
Sbjct: 93  HTRQEEEEEEEENEKQQQSDEA 114

This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length. Length = 133

>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 27  MCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYL 73
           +C     + KK K K+ +K + KKKKKK +NP+ ++  ++F   G L
Sbjct: 78  LCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQL 124

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-I topology. Length = 173

>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 9/30 (30%)

Query: 5  EEEEEEEEE---------EEEEEEEEEEDL 25
          E+E +EEEE         EE EEEE+ EDL
Sbjct: 1  EDEPDEEEELEDDIDDLDEEAEEEEDGEDL 30

This domain family is found in eukaryotes, and is typically between 138 and 153 amino acids in length. The family is found in association with pfam00493. Mini-chromosome maintenance (MCM) proteins are essential for DNA replication. These proteins use ATPase activity to perform this function. Length = 145

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 3/25 (12%)

Query: 2   GKGEEEEEEEEEEEEEEEE---EEE 23
            + EEE  EEEEEEEEEEE   EEE
Sbjct: 309 EEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 33  AMKKKKKKKKKKKKKKKKKKKKK 55
            + K+ +KK+K+K+K K KK+ +
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHR 417

Length = 434

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 3  KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
          K  E+E  +EEEEEE+EE++E+     +      ++++K++KKKK KK K+   
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82

Length = 529

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 4   GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
            +E E ++EEE E+E + EE L         KKK+ K K  K+  KKKKKK     
Sbjct: 63  DDEPESDDEEEGEKELQREERLK--------KKKRVKTKAYKEPTKKKKKKDPTAA 110

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II)

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 15/21 (71%), Positives = 18/21 (85%)

Query: 3   KGEEEEEEEEEEEEEEEEEEE 23
           K +E +E+EEEEEEEEEEE E
Sbjct: 131 KEDESDEDEEEEEEEEEEEAE 151

Bone sialoprotein (BSP) is a major structural protein of the bone matrix that is specifically expressed by fully-differentiated osteoblasts. The expression of bone sialoprotein (BSP) is normally restricted to mineralised connective tissues of bones and teeth where it has been associated with mineral crystal formation. However, it has been found that ectopic expression of BSP occurs in various lesions, including oral and extraoral carcinomas, in which it has been associated with the formation of microcrystalline deposits and the metastasis of cancer cells to bone. Length = 291

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
           GK EE  EE  EEE+++   +   +   N L      KKK K+ K    K++++   VV
Sbjct: 841 GKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVV 899

Length = 1622

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 3   KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
           +  +E+ ++E E+EE +++ E+          KK+ K++KKK+KKKKKKK KK N
Sbjct: 53  ELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGN 107

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 3  KGEEEEEEEEEEEEEEEEEEEDL 25
            EE++EEEEEEEE+EE EEE  
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEAA 98

Length = 106

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMK 35
              ++EEEEEEEEEE+E+ +++D     +Y A  
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAEN 204

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 8/52 (15%)

Query: 3   KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
           K E E++E+ EE EEE+ EEE          + KK KK KK K KK    K 
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEG--------GLSKKGKKLKKLKGKKNGLDKD 354

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 16/21 (76%), Positives = 17/21 (80%)

Query: 5   EEEEEEEEEEEEEEEEEEEDL 25
            EEEEEEEEEEEEEE  EE+ 
Sbjct: 301 AEEEEEEEEEEEEEEPSEEEA 321

Length = 330

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 2   GKGEEEEEEEEEEEEEEEEEEE 23
            + EE+E+EEEEEEEEE EE E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPE 369

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 3  KGEEEEEEEEEEEEEEEEEEEDL 25
             EE++EEEEEEEE+EE EE+ 
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEA 97

Length = 106

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 15 EEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
          E+ +E +EE     L+   +K   K +KKK+K++ K  K K+ P +++
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLFV 94

Length = 330

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 2  GKGEEEEEEEEEEEEEEEEEEEDL 25
                 EEE++EEEEEEEE++D+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDDDM 83

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
KOG1581|consensus	327		99.87
KOG1580|consensus	337		99.82
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.64
KOG1582|consensus	367		99.52
KOG1583|consensus	330		99.17
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.87
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.31
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.81
PRK11689	295	aromatic amino acid exporter; Provisional	96.72
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.66
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.44
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.27
PRK15430	296	putative chloramphenical resistance permease RarD;	96.11
KOG1441|consensus	316		95.57
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.5
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	95.21
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	94.88
PRK11272	292	putative DMT superfamily transporter inner membran	94.81
PF13536	113	EmrE: Multidrug resistance efflux transporter	94.75
PRK10532	293	threonine and homoserine efflux system; Provisiona	94.63
PLN00411	358	nodulin MtN21 family protein; Provisional	94.01
KOG2229|consensus	616		93.76
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	93.64
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	93.55
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	93.54
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	92.97
KOG2422|consensus	665		92.59
PRK15430	296	putative chloramphenical resistance permease RarD;	92.22
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	91.78
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	91.63
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	91.06
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	90.72
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	90.49
COG2510	140	Predicted membrane protein [Function unknown]	90.09
PLN00411	358	nodulin MtN21 family protein; Provisional	89.87
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	89.38
KOG1444|consensus	314		86.76
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	85.2
COG0697	292	RhaT Permeases of the drug/metabolite transporter	84.9
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	84.62
PF01056	329	Myc_N: Myc amino-terminal region; InterPro: IPR012	84.33
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	84.27
PF14812	81	PBP1_TM: Transmembrane domain of transglycosylase	83.79
KOG2765|consensus	416		83.37
PF10278	178	Med19: Mediator of RNA pol II transcription subuni	83.2
PRK11272	292	putative DMT superfamily transporter inner membran	81.39
KOG2927|consensus	372		81.31
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	81.07

>KOG1581|consensus

Probab=99.87  E-value=1.1e-22  Score=167.64  Aligned_cols=62  Identities=31%  Similarity=0.503  Sum_probs=60.3

Q ss_pred             HhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          54 KKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        54 K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..+||++++|++++|+||++||+|||+||..||||++++||||||++||+||+++||||+++
T Consensus       234 ~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~  295 (327)
T KOG1581|consen  234 IKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSS  295 (327)
T ss_pred             HHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence            46899999999999999999999999999999999999999999999999999999999986

>KOG1580|consensus

Probab=99.82  E-value=3.7e-21  Score=156.34  Aligned_cols=62  Identities=29%  Similarity=0.488  Sum_probs=60.3

Q ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370          55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ  116 (116)
Q Consensus        55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~  116 (116)
                      +|||++++++.++++||++||+|||.|+..||||+|++|||+|||||||+|+++|+||++.+
T Consensus       235 ~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r  296 (337)
T KOG1580|consen  235 QRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR  296 (337)
T ss_pred             HhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH
Confidence            79999999999999999999999999999999999999999999999999999999999863

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.64  E-value=3e-16  Score=124.73  Aligned_cols=63  Identities=37%  Similarity=0.605  Sum_probs=60.4

Q ss_pred             HhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370          54 KKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ  116 (116)
Q Consensus        54 K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~  116 (116)
                      ..+||+.+.+++++|+++++||.|+|+++++||||++++|+|+||++|+++|+++|+|+++++
T Consensus       218 ~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~  280 (303)
T PF08449_consen  218 ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL  280 (303)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH
Confidence            348999999999999999999999999999999999999999999999999999999999863

; GO: 0055085 transmembrane transport

>KOG1582|consensus

Probab=99.52  E-value=1.7e-14  Score=119.19  Aligned_cols=64  Identities=59%  Similarity=0.918  Sum_probs=61.4

Q ss_pred             hHhhCch-HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370          53 KKKNNPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ  116 (116)
Q Consensus        53 ~K~~hP~-~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~  116 (116)
                      -|.+||. .+.+.+++|+++++||.|+..+|+.|||+++++|||.||++||+||+++|.+|||.|
T Consensus       251 fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q  315 (367)
T KOG1582|consen  251 FCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ  315 (367)
T ss_pred             HHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH
Confidence            4789997 999999999999999999999999999999999999999999999999999999854

>KOG1583|consensus

Probab=99.17  E-value=9.3e-12  Score=102.74  Aligned_cols=60  Identities=27%  Similarity=0.516  Sum_probs=58.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370          57 NPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ  116 (116)
Q Consensus        57 hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~  116 (116)
                      -|.+++|+++.+++||+|...+|.+.++..||++++|.|+|||+|+++|+++|.||||++
T Consensus       238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~  297 (330)
T KOG1583|consen  238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW  297 (330)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH
Confidence            599999999999999999999999999999999999999999999999999999999974

>TIGR00803 nst UDP-galactose transporter

Probab=98.87  E-value=1.1e-09  Score=83.33  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          56 NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .||...+   +..+++++||.+|+.+++.+|+++.++++++|+++|+++|+++|||++++
T Consensus       150 ~~~~~~~---~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~  206 (222)
T TIGR00803       150 GYPTAVW---IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS  206 (222)
T ss_pred             CCchHHH---HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence            4555443   44477899999999999999999999999999999999999999999985

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.31  E-value=1.7e-06  Score=61.17  Aligned_cols=60  Identities=20%  Similarity=0.374  Sum_probs=56.8

Q ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          56 NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      +.|..+..+++.++++.+-+++.|.++...+|++.+++..+|.++.+++|+++|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~  135 (153)
T PF03151_consen   76 SDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP  135 (153)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence            456889999999999999999999999999999999999999999999999999999885

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.81  E-value=0.0037  Score=51.35  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ++..+++.+++.++-..+.|+.+.+-++++.++..+++.++++++|+++||+++|+
T Consensus       275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~  330 (350)
T PTZ00343        275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL  330 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence            33344444445555555677899999999999999999999999999999999986

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.72  E-value=0.0057  Score=48.50  Aligned_cols=58  Identities=14%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ++.+..++..++++.+|+++.++.+++.|+..+++++.+-=.++++++++++|+++++
T Consensus       212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~  269 (295)
T PRK11689        212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF  269 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence            4567777788888999999999999999999999999999999999999999999875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.66  E-value=0.0028  Score=50.03  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          70 SGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        70 ~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      +..+++.+.|+.+++.||++++++.+++.++++++|+++||+++|+
T Consensus       230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~  275 (302)
T TIGR00817       230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISP  275 (302)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCch
Confidence            3344455667899999999999999999999999999999999986

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.44  E-value=0.013  Score=44.39  Aligned_cols=57  Identities=9%  Similarity=0.117  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          59 VVYIYALLFSIS-GYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        59 ~~~~~i~~~sl~-~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..+..++..+++ +.+|+.+.++.+++.|+..++++..+.-.+++++|+++|++++++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~  246 (260)
T TIGR00950       189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL  246 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            344455656655 578999999999999999999999999999999999999999875

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.27  E-value=0.0066  Score=40.22  Aligned_cols=58  Identities=12%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             chHHHHHHHHHHH-HHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          58 PVVYIYALLFSIS-GYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        58 P~~~~~i~~~sl~-~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      +..+..++..++. +++++.+.++.+++-++..++++..+-=++++++++++++.++++
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~  108 (126)
T PF00892_consen   50 PRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSW  108 (126)
T ss_pred             hhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            3344455555555 699999999999999999999999999999999999999998875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.11  E-value=0.02  Score=45.42  Aligned_cols=54  Identities=6%  Similarity=-0.010  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          62 IYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        62 ~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..+++.++++++++++.++.+++.|+-.+++++.+-=.++++++.++||+++++
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~  267 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA  267 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            345555668889999999999999999999999999999999999999999886

>KOG1441|consensus

Probab=95.57  E-value=0.0042  Score=51.70  Aligned_cols=55  Identities=24%  Similarity=0.420  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ...++++++|..+-++.+|..|.+.+||+..+.-.....+-|+.|+++|++|+|+
T Consensus       235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~  289 (316)
T KOG1441|consen  235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF  289 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence            4455677799999999999999999999999999999999999999999999976

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.50  E-value=0.058  Score=40.48  Aligned_cols=56  Identities=11%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISGY-LGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~a-iGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+..++..++++. +|+.+.++.++.-|+...+++..+.-+++++++++++++++++
T Consensus       213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~  269 (292)
T COG0697         213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP  269 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence            4556666666666 6999999999999999999999999999999999999998874

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=95.21  E-value=0.012  Score=42.11  Aligned_cols=44  Identities=14%  Similarity=-0.035  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHH-HHHhhCchhhhHhHhhhhHHHHHHHHhhccC
Q psy3370          68 SISGYLGVQVVLT-LVKTCGAFVAVTVTTCRKAVTIVLSFVFFAK  111 (116)
Q Consensus        68 sl~~aiGQ~fIf~-ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh  111 (116)
                      ++.-|+|.++|+. -+.+++-+.-.+|-++||.=.=..|+.-|+|
T Consensus        55 ~v~rYltSf~id~~v~shi~h~e~~~vhv~rk~ha~~a~~~g~~~   99 (101)
T PF09026_consen   55 MVKRYLTSFPIDDKVQSHILHLEHDLVHVTRKNHARQASVRGIGH   99 (101)
T ss_dssp             HHHHHHCTS---HHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             hHhhhhhccchhHhhhhhhhccccceEEeeeeccchhhccccccc
Confidence            3444566555554 5667888889999999987666666665555

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=94.88  E-value=0.11  Score=41.18  Aligned_cols=57  Identities=9%  Similarity=0.124  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          59 VVYIYALLFSI-SGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        59 ~~~~~i~~~sl-~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..+..++.+++ ++.++..+.+..+++.|+...++++.+-=++++++|++++|.++++
T Consensus       212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~  269 (299)
T PRK11453        212 TTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG  269 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence            34555555554 4456666667789999999999999999999999999999999875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=94.81  E-value=0.13  Score=40.69  Aligned_cols=57  Identities=7%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          59 VVYIYALLFSIS-GYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        59 ~~~~~i~~~sl~-~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..+..++..++. +.+|..+.++.+++.|+-.++++..+.=++++++|+++++.++++
T Consensus       210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~  267 (292)
T PRK11272        210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP  267 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence            345566666664 578888999999999999999999999999999999999999875

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=94.75  E-value=0.16  Score=34.90  Aligned_cols=52  Identities=13%  Similarity=0.308  Sum_probs=39.6

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          63 YALLFSISGY-LGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        63 ~i~~~sl~~a-iGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+++.++++. ++..+.++.++.-+ ..++.+..+==+++.++|.++|++++++
T Consensus        36 ~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~   88 (113)
T PF13536_consen   36 WLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSP   88 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4667777776 55555555555555 5777888888999999999999999875

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=94.63  E-value=0.14  Score=40.56  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISG-YLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~-aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+..++..++.+ .++..+.++.+++-|+..+++++.+==.+++++++++||.++++
T Consensus       207 ~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~  263 (293)
T PRK10532        207 ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL  263 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence            333344555554 45555779999999999999999999999999999999998875

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=94.01  E-value=0.19  Score=41.98  Aligned_cols=49  Identities=10%  Similarity=0.149  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          67 FSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        67 ~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+++.+++..+-++.+++.||..+++...+==++++++|++++|.++++
T Consensus       262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~  310 (358)
T PLN00411        262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL  310 (358)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence            3444567778888899999999999999999999999999999999986

>KOG2229|consensus

Probab=93.76  E-value=0.048  Score=48.90  Aligned_cols=56  Identities=43%  Similarity=0.593  Sum_probs=24.3

Q ss_pred             CCCCchhhHhhhhhhhhhhhhhhhhhhhhhhHHhHHhHHHHHH----HHHHHhhHhHhhCch
Q psy3370           2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKK----KKKKKKKKKKKNNPV   59 (116)
Q Consensus         2 ~~~~~~~e~E~eee~ee~~~~e~~~~~~~~~pskKKkkkkk~~----~~~~~~~~~K~~hP~   59 (116)
                      |.|.+|||+..|.++|+++.  +....-.....+++|++-+|.    +.=|||.+++...|.
T Consensus       163 ~~D~~dee~dsd~~~d~dg~--~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t  222 (616)
T KOG2229|consen  163 GADNEDEEDDSDSESDEDGP--DADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPT  222 (616)
T ss_pred             cCCccccccccccccccccc--cHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCC
Confidence            55555554444444444333  333333333444433332221    112555555666664

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=93.64  E-value=0.11  Score=40.80  Aligned_cols=55  Identities=15%  Similarity=0.065  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      +..+.+-.+++.+|+.+.++.+++.|+...+....+-=.+++++++++||+++++
T Consensus       211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~  265 (281)
T TIGR03340       211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYL  265 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence            3344555577788999999999999998888888888899999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=93.55  E-value=0.29  Score=37.55  Aligned_cols=56  Identities=13%  Similarity=0.059  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+..+++.+++.++++.+.|+.+++-++...+++..+==++++++|.++|+++++.
T Consensus        69 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~  124 (256)
T TIGR00688        69 LILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR  124 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            34456777777889999999999998888888999999999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=93.54  E-value=0.21  Score=39.10  Aligned_cols=56  Identities=0%  Similarity=0.025  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+..+++.+++++++..+.++.++.-++-..++++.+.-+++++++.++|+.+++.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~  117 (281)
T TIGR03340        62 FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSP  117 (281)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCH
Confidence            34455666667788888888888877888888888889999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=92.97  E-value=0.38  Score=36.41  Aligned_cols=53  Identities=13%  Similarity=-0.139  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+++-+++.+++..+.|+.+++-++-..+++..+-=+++.+++.++++.++++
T Consensus        49 ~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~  101 (260)
T TIGR00950        49 LLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRK  101 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcH
Confidence            33444455678888999999998888889999999999999999999988774

>KOG2422|consensus

Probab=92.59  E-value=0.021  Score=51.67  Aligned_cols=10  Identities=20%  Similarity=0.069  Sum_probs=3.8

Q ss_pred             HHHHHHHHHh
Q psy3370          75 VQVVLTLVKT   84 (116)
Q Consensus        75 Q~fIf~ti~~   84 (116)
                      |-+|......
T Consensus       149 q~~v~~i~~~  158 (665)
T KOG2422|consen  149 QDWVLEIDLK  158 (665)
T ss_pred             chhHHHHhhh
Confidence            3334333333

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=92.22  E-value=0.68  Score=36.67  Aligned_cols=53  Identities=15%  Similarity=0.047  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+++-+++.+++..+.|+.+++-++...+++..+-=++++++|.++++.+++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~  127 (296)
T PRK15430         75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRR  127 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            33445566677788889999999999999999999999999999999999875

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=91.78  E-value=0.69  Score=36.67  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..+..+++++|-+.+-..+++-++++=...+.+=-++|.++|+++|+.++|+
T Consensus       184 ~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  184 VWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            4456668888888999999999999999999999999999999999999985

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=91.63  E-value=0.85  Score=35.01  Aligned_cols=49  Identities=2%  Similarity=-0.019  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhh
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF  108 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~  108 (116)
                      .+..+++.++++.+|+.+.++.+++.++-.+++++.+--.+++++++++
T Consensus       207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            5677788888899999999999999999999999999999999999765

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=91.06  E-value=0.82  Score=36.03  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      -+..++..++++++.+.+-+..+..-++-..+++..+==+++++++.++++++++.
T Consensus        64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~  119 (302)
T TIGR00817        64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPS  119 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcH
Confidence            46678889999999998888888887888888888888999999999999998874

specificities overlap.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=90.72  E-value=1.5  Score=34.81  Aligned_cols=64  Identities=5%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             HhHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          52 KKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        52 ~~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ..-.++|.-...+++=|++-++.....|..+++..|.+.-+...++=.+|-++|+++++++++.
T Consensus         8 ~~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~   71 (244)
T PF04142_consen    8 DEVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSR   71 (244)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccch
Confidence            4455667667777888899999999999999999999999999999999999999999999985

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=90.49  E-value=1.5  Score=30.82  Aligned_cols=47  Identities=9%  Similarity=0.048  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          69 ISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        69 l~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ++-.++.++..+.+++-..-++..+.++.=++++++|.++|+.++|+
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~   91 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSP   91 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            33344555555666666655666667788899999999999999986

>COG2510 Predicted membrane protein [Function unknown]

Probab=90.09  E-value=0.34  Score=36.57  Aligned_cols=59  Identities=17%  Similarity=0.357  Sum_probs=52.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          57 NPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        57 hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .|..+.++++-++.++++-+|.|+.++.=.+-.++-+-.+--.+.+++|+++++.++|.
T Consensus        63 ~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~  121 (140)
T COG2510          63 GPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSL  121 (140)
T ss_pred             CcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCH
Confidence            56678899999999999999999999988877777788888899999999999999885

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=89.87  E-value=1.1  Score=37.42  Aligned_cols=55  Identities=16%  Similarity=0.205  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhh------ccCCCCC
Q psy3370          61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF------FAKPFTF  115 (116)
Q Consensus        61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~------Fgh~lt~  115 (116)
                      +..+++.++++++.+.+.|.-++.-+|...+++..+==+++++++.++      |+.++++
T Consensus        78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~  138 (358)
T PLN00411         78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSV  138 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccH
Confidence            556666777776677788888999999999999999999999999998      6877764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=89.38  E-value=1.1  Score=36.88  Aligned_cols=56  Identities=11%  Similarity=0.043  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .+..++..++|+.++.+..+..++.-++-...++..+==++++++|.++++.++++
T Consensus       113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~  168 (350)
T PTZ00343        113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNL  168 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccH
Confidence            56778899999988877766777766777777888888899999999999998875

>KOG1444|consensus

Probab=86.76  E-value=1.4  Score=37.12  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      |.++..+++-|++|.+=-++.+.+...-+|++.++|-..-++.+.|.-++.++.|+++
T Consensus       225 ~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~  282 (314)
T KOG1444|consen  225 SSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF  282 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech
Confidence            5678888999999999999999999999999999999999999999999999888876

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=85.20  E-value=3.7  Score=32.49  Aligned_cols=53  Identities=23%  Similarity=0.167  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC--chhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          63 YALLFSISGYLGVQVVLTLVKTCG--AFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        63 ~i~~~sl~~aiGQ~fIf~ti~~FG--sL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      .++.++++.++++++.++.--.++  +-..++++.+==+++++++.++++.+++.
T Consensus        60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~  114 (299)
T PRK11453         60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQG  114 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcH
Confidence            355566766677765544444443  44556677777899999999999988774

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=84.90  E-value=4.2  Score=30.39  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHH-hhccCCCCC
Q psy3370          60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSF-VFFAKPFTF  115 (116)
Q Consensus        60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~-l~Fgh~lt~  115 (116)
                      .++.++.-.++.++++.+.|+.+..-++-..+++..+-=+++.+++. ++++.++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~  125 (292)
T COG0697          69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSL  125 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcH
Confidence            44566777777788888888889999999999999999999999996 666888775

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=84.62  E-value=4  Score=32.58  Aligned_cols=58  Identities=9%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH-hhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          58 PVVYIYALLFSISGYLGVQVVLTLVK-TCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        58 P~~~~~i~~~sl~~aiGQ~fIf~ti~-~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      |...+..++.++.-++|..+.+...+ .=|+-+.+++.+.==+.++++|+++|+.++++
T Consensus       208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~  266 (290)
T TIGR00776       208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK  266 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            44444455577777777777777778 88999999999999999999999999988775

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain

Probab=84.33  E-value=0.31  Score=41.08  Aligned_cols=25  Identities=56%  Similarity=0.691  Sum_probs=0.0

Q ss_pred             chhhHhhhhhhhhhhhhhhhhhhhh
Q psy3370           6 EEEEEEEEEEEEEEEEEEDLHMCLN   30 (116)
Q Consensus         6 ~~~e~E~eee~ee~~~~e~~~~~~~   30 (116)
                      +.++++++||+||+++|+++..+-+
T Consensus       227 ~s~~~~~~~eeeeeeEEIDVVTVEk  251 (329)
T PF01056_consen  227 ESDSDEEEEEEEEEEEEIDVVTVEK  251 (329)
T ss_dssp             -------------------------
T ss_pred             ccccccccccccCCCcceEEEEeee
Confidence            3334455555556667778777754

The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=84.27  E-value=2.9  Score=35.04  Aligned_cols=58  Identities=12%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      +++...++.+++|..+--.++-..++.-||+.+.+-..+==+.++++++++|+..++|
T Consensus       230 ~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~  287 (334)
T PF06027_consen  230 SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW  287 (334)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence            3455666667766666555566677888999888888888999999999999988875

Some of the sequences in this family are annotated as putative membrane proteins.

>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A

Probab=83.79  E-value=0.33  Score=33.50  Aligned_cols=9  Identities=33%  Similarity=0.287  Sum_probs=0.0

Q ss_pred             hhhHHhHHh
Q psy3370          30 NYLAMKKKK   38 (116)
Q Consensus        30 ~~~pskKKk   38 (116)
                      +++|++-++
T Consensus        51 e~m~rK~k~   59 (81)
T PF14812_consen   51 EPMPRKGKK   59 (81)
T ss_dssp             ---------
T ss_pred             ccccccccc
Confidence            445554443

>KOG2765|consensus

Probab=83.37  E-value=1.4  Score=38.41  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             hHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        53 ~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ++-.+-+.....+.||..-.+++++-...++.-..-..+++.++--+|+++++.++-+++||+
T Consensus       151 ~~~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~  213 (416)
T KOG2765|consen  151 GKLTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTL  213 (416)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhH
Confidence            344555677888999999999999998888888888888999999999999999988888875

>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=83.20  E-value=0.33  Score=37.88  Aligned_cols=15  Identities=53%  Similarity=0.669  Sum_probs=6.9

Q ss_pred             HHHHHhhHhHhhCch
Q psy3370          45 KKKKKKKKKKKNNPV   59 (116)
Q Consensus        45 ~~~~~~~~~K~~hP~   59 (116)
                      .|+++|++....||-
T Consensus       161 eKk~kK~K~~~~~~~  175 (178)
T PF10278_consen  161 EKKKKKKKHSPEHPG  175 (178)
T ss_pred             HHHHHhhcCCCcCCC
Confidence            333344445555554

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=81.39  E-value=5.2  Score=31.51  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHH-HhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370          61 YIYALLFSISG-YLGVQVVLTLV-KTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        61 ~~~i~~~sl~~-aiGQ~fIf~ti-~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      +.+++..++++ .+++.+.|... ..-++-..+++..+==+++.++|.+ |+++++.
T Consensus        68 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~  123 (292)
T PRK11272         68 WLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRK  123 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCch
Confidence            33444555444 45566777776 5555556777888888999999975 7888875

>KOG2927|consensus

Probab=81.31  E-value=2.5  Score=36.35  Aligned_cols=33  Identities=6%  Similarity=0.142  Sum_probs=21.7

Q ss_pred             HHHHHHhhCchhhhHhHhhhhHHHHHHHHhhcc
Q psy3370          78 VLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA  110 (116)
Q Consensus        78 If~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fg  110 (116)
                      .|+.|..+|=|++-+++++=.++-.+++.+++|
T Consensus       219 yY~sig~~gfl~~IlvLaIvRlILF~I~~il~~  251 (372)
T KOG2927|consen  219 YYLSIGAGGFLAFILVLAIVRLILFGITWILTG  251 (372)
T ss_pred             eeeecchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            355565666677666766666666666777666

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=81.07  E-value=5.3  Score=31.90  Aligned_cols=58  Identities=14%  Similarity=0.124  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHh-hhhHHHHHHHHhhccCCCCC
Q psy3370          58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTT-CRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT-~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      |..+..-++.++.-++||++.|..++.-|.-+...+.+ +==.++.++|+++|+...+.
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~  114 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTS  114 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccch
Confidence            66666667777778999999999999888777755555 33347888999999877653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	92.7
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	90.08

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=92.70  E-value=0.14  Score=36.51  Aligned_cols=52  Identities=12%  Similarity=0.098  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCchhhhHh-HhhhhHHHHHHHHhhccCCCCCC
Q psy3370          65 LLFSISGYLGVQVVLTLVKTCGAFVAVTV-TTCRKAVTIVLSFVFFAKPFTFQ  116 (116)
Q Consensus        65 ~~~sl~~aiGQ~fIf~ti~~FGsL~~t~V-tT~RK~~SIlLS~l~Fgh~lt~~  116 (116)
                      ++-.++..++.++.++.++.-+.-++..+ +.+-=++++++|+++|+.++|++
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~   86 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP   86 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            34445566677777777887777767777 78999999999999999999863

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=90.08  E-value=1  Score=30.33  Aligned_cols=46  Identities=11%  Similarity=0.116  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHhhCchhhh-Hh-HhhhhHHHHHHHHhhccCCCCC
Q psy3370          69 ISGYLGVQVVLTLVKTCGAFVAV-TV-TTCRKAVTIVLSFVFFAKPFTF  115 (116)
Q Consensus        69 l~~aiGQ~fIf~ti~~FGsL~~t-~V-tT~RK~~SIlLS~l~Fgh~lt~  115 (116)
                      ++..++.++..+.++ ..++..+ .+ +.+-=++++++|+++|+.++|+
T Consensus        38 ~~~~~~~~~~~~al~-~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~   85 (110)
T 3b5d_A           38 ICYCASFWLLAQTLA-YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL   85 (110)
T ss_pred             HHHHHHHHHHHHHHH-hCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence            334444455555555 4555554 55 6788999999999999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00