Psyllid ID: psy3482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MLRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLEGTLNLEEEKTKPTSLLGKLNPFAKS
Secondary Structure (PSIPRED)
cccccccccHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEEEcccccEEEEEEEHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHccHHHHccHHHHHHHHHHHccccccEEEcccccEEEEcccccEEEcccccccccccccHccccccccEEEEccEEEccccccccccccccccEEEEEEHHHHccEEEEEEcHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHcccccccc
Coil and Loop (DISEMBL)
MLRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKmekpkpvhyveepgrykknaqgvvvpvinypipskytleqdlgiwggesviegyrrpahkyetqppeywvphlLDHIVYSEIldkylnvpvtqRTVDLIhehygfdeYLLQTRACNLNSLIACKIKRKMLLALYdktlypddetkRETIYNKYKHYLEnysrediewygwslpeAQEKIILIEREAearskvplKVLFRKEMIEDLKQKKLegtlnleeektkptsllgklnpfaks
Flexible Loop (DISEMBL)
mlrakhlangariryvkkktafdteiasklpeSYRKFYAEWKMEKPKPVHYVEEPGrykknaqgvvVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYdktlypddetkretIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIereaearskvplkvlfrKEMIEDlkqkklegtlnleeektkptsllgklnpfaks
Low Complexity Region (SEG)
MLRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLEGTLNLEEEKTKPTSLLGKLNPFAKS
Disordered region (IsUnstruct)
*********GARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMI**********************************
Disordered Region (DISOPRED)
*************RYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVE*************VPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYD*******************HYLENYSREDIEWYGWSLPEAQEKII***************VLFRK******************************LNPF***
Disordered Region (DISEMBL)
MLRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLEGTLNLEEEKTKPTSLLGKLNPFAKS
Disordered Region (DISPRO)
*******ANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLEGTLNLEEEK****SLLGK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMxxxxxxxxxxxxxxxxxxxxxPTSLLGKLNPFAKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9VMX0	302	39S ribosomal protein L28	yes	N/A	0.881	0.814	0.403	2e-45
Q2HJJ1	256	39S ribosomal protein L28	yes	N/A	0.788	0.859	0.387	3e-31
Q68EV6	253	39S ribosomal protein L28	N/A	N/A	0.788	0.869	0.379	5e-30
Q9D1B9	257	39S ribosomal protein L28	yes	N/A	0.788	0.856	0.370	8e-29
Q13084	256	39S ribosomal protein L28	yes	N/A	0.767	0.835	0.376	3e-25

>sp|Q9VMX0|RM28_DROME 39S ribosomal protein L28, mitochondrial OS=Drosophila melanogaster GN=mRpL28 PE=1 SV=1

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 161/255 (63%), Gaps = 9/255 (3%)

Query: 17  KKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN-AQGVVVPVINYPIP 75
           K+   FD  + ++LPE+YRKF+ EWK+  P  VHY+ +  +++++     + PV N P+P
Sbjct: 16  KRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLP 75

Query: 76  SKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQ 135
              T E   GIWGGE+VI+G+++   + + + P +WVP+L   +V+S +LD Y++V VT+
Sbjct: 76  LIDTPESHRGIWGGEAVIKGFQK-REQTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTE 134

Query: 136 RTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRET-IYNK 194
           RT++ IHE +GFD YLL+ RAC+L S +A K+KR++L AL +      DE +R+  +  +
Sbjct: 135 RTLEQIHECHGFDHYLLKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKE 194

Query: 195 YKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLE 254
           Y+ YLE Y+ E+I+WYG +  EA  K+    REAE    VP K+ FR ++IE L+Q  + 
Sbjct: 195 YRRYLEPYTPEEIDWYGHTYLEAIRKLQKQLREAE--KVVPHKLEFRGKLIEQLRQAGIS 252

Query: 255 GTLNLEEEKTKPTSL 269
               LE    KP +L
Sbjct: 253 EAGKLE----KPDAL 263

Drosophila melanogaster (taxid: 7227)

>sp|Q2HJJ1|RM28_BOVIN 39S ribosomal protein L28, mitochondrial OS=Bos taurus GN=MRPL28 PE=1 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 128/232 (55%), Gaps = 12/232 (5%)

Query: 26  IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
           I S+LP  Y +   E +   P PVH+     ++K N + G    V + PIP  Y  E  L
Sbjct: 20  IYSRLPAHYLRSLEEART--PTPVHFRPHGAKFKINPKNGQRERVEDVPIPVHYPPESQL 77

Query: 85  GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
           G+WGGE  ++G+R   + K+  +  + W P L    +YSEILD    V VT RT+DLI E
Sbjct: 78  GLWGGEGWLKGHRYVNNDKFSKRVKKVWKPQLFQRELYSEILDTRFTVTVTMRTLDLIDE 137

Query: 144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
            YGFD Y+L+T   +L S     +KR MLL L   D  L+PDD  +R  IY+KYK ++  
Sbjct: 138 AYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPDDPERRAAIYDKYKAFV-- 195

Query: 202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
               + EW G +L EA EK    +R  E +  VPL  ++ +E++E L+Q+ L
Sbjct: 196 IPEAEAEWVGLTLDEAVEK----QRLLEEKDPVPLFKVYVEELVEQLQQQAL 243

Bos taurus (taxid: 9913)

>sp|Q68EV6|RM28_XENLA 39S ribosomal protein L28, mitochondrial OS=Xenopus laevis GN=mrpl28 PE=2 SV=1

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 12/232 (5%)

Query: 26  IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
           I ++LPE YR+   E    KP PVH+     +Y+ N + G    V + PI   +  + + 
Sbjct: 20  IYARLPEHYRRSLLE--KHKPYPVHWKPHGLKYRLNPKSGQRERVQDVPILPYFPPQANK 77

Query: 85  GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
           G+WGGE  + GY    + K   +  + W P L    +YSEILDK  ++ VT RT+DLI  
Sbjct: 78  GLWGGEGWVTGYHYANNDKLSARVKKVWKPQLFKRELYSEILDKKFSITVTMRTLDLIDA 137

Query: 144 HYGFDEYLLQTRACNLNSLIACKIKRKML--LALYDKTLYPDDETKRETIYNKYKHYLEN 201
            YGFD Y+L+T   +LNS +    KR ML  LA  D  LYP+D +KR+ IYNKYK ++  
Sbjct: 138 AYGFDFYILKTPKEDLNSKVGMDFKRAMLMRLASKDSNLYPNDPSKRDQIYNKYKEFV-- 195

Query: 202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
              E+ EW G SL EA EK  L+E+    +   PL  ++ +E+++ ++ + L
Sbjct: 196 IPMEEAEWVGLSLEEAVEKQRLLEK----KDPTPLFKVYVEELVKQIETQTL 243

Xenopus laevis (taxid: 8355)

>sp|Q9D1B9|RM28_MOUSE 39S ribosomal protein L28, mitochondrial OS=Mus musculus GN=Mrpl28 PE=2 SV=3

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 12/232 (5%)

Query: 26  IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
           I ++LP  + +   E +   P PVHY     ++K N + G    V + PIP  Y  E   
Sbjct: 20  ICARLPAHFLRSLEEERT--PTPVHYKPHGTKFKINPKNGQRERVEDVPIPVHYPPESQQ 77

Query: 85  GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
           G+WGGE +I GYR   + K   +  + W P L    +YSEILDK   V VT RT+DLI E
Sbjct: 78  GLWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDLIDE 137

Query: 144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
            YGFD Y+L+T   +L S     +KR MLL L   D  L+P++  +R  IY+KY+ ++  
Sbjct: 138 AYGFDFYILKTPKEDLGSKFGMDLKRGMLLRLARQDPHLHPENPERRAAIYDKYRSFV-- 195

Query: 202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
               + EW G +L EA EK    +R  E +  VPL  ++ +E+++ L+++ L
Sbjct: 196 IPEAEAEWVGLTLEEALEK----QRLLEEKDPVPLFKVYVEELVQRLQEQVL 243

Mus musculus (taxid: 10090)

>sp|Q13084|RM28_HUMAN 39S ribosomal protein L28, mitochondrial OS=Homo sapiens GN=MRPL28 PE=1 SV=4

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 12/226 (5%)

Query: 15  YVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYP 73
           ++ K+      I S+LP  Y +   E +   P PVHY     ++K N + G    V + P
Sbjct: 9   WLWKRLQLREGICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVP 66

Query: 74  IPSKYTLEQDLGIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVP 132
           IP  +  E   G+WGGE  I G     + K   +  + W P L +   YSEILDK   V 
Sbjct: 67  IPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVT 126

Query: 133 VTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRET 190
           VT RT+DLI E YG D Y+L+T   +L S     +KR MLL L   D  L+P+D  +R  
Sbjct: 127 VTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAA 186

Query: 191 IYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPL 236
           IY+KYK +      E+ EW G +L EA EK    +R  E +  VPL
Sbjct: 187 IYDKYKEF--AIPEEEAEWVGLTLEEAIEK----QRLLEEKDPVPL 226

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
156552085	279	PREDICTED: 39S ribosomal protein L28, mi	0.971	0.971	0.474	8e-64
193669062	266	PREDICTED: 39S ribosomal protein L28, mi	0.931	0.977	0.457	4e-63
328722845	266	PREDICTED: 39S ribosomal protein L28, mi	0.931	0.977	0.457	6e-63
239790943	266	ACYPI007188 [Acyrthosiphon pisum]	0.931	0.977	0.457	8e-63
350399652	271	PREDICTED: 39S ribosomal protein L28, mi	0.953	0.981	0.475	1e-62
340712607	271	PREDICTED: LOW QUALITY PROTEIN: 39S ribo	0.870	0.896	0.494	2e-59
322797333	280	hypothetical protein SINV_00972 [Solenop	0.942	0.939	0.433	5e-58
380013018	274	PREDICTED: 39S ribosomal protein L28, mi	0.946	0.963	0.464	2e-57
110764475	274	PREDICTED: 39S ribosomal protein L28, mi	0.856	0.872	0.485	5e-57
383849354	276	PREDICTED: 39S ribosomal protein L28, mi	0.835	0.844	0.489	6e-55

>gi|156552085|ref|XP_001604861.1| PREDICTED: 39S ribosomal protein L28, mitochondrial-like [Nasonia vitripennis]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 132/278 (47%), Positives = 192/278 (69%), Gaps = 7/278 (2%)

Query: 1   MLRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKK 60
           M ++ H A   ++ Y+ K T +   I + LPE Y+KF+ EWK++KP PVHY+ +PGR++K
Sbjct: 1   MAQSSH-AWKKKLYYLPKVTRWSNGIGAALPEEYKKFWKEWKVQKPAPVHYIPKPGRWEK 59

Query: 61  NAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGY-RRPAHKYETQPPEYWVPHLLDHI 119
              G ++PV N P+P KY  E D GIWGGE+V++G+ ++  H+   + P +WVP LL  +
Sbjct: 60  KPSGDILPVQNIPLPLKYPKEIDQGIWGGEAVVQGFTKKFKHR---RVPHFWVPKLLKSV 116

Query: 120 VYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKT 179
           +YSEILDKY+   VT R + LIH++YGFD Y+L+T+AC+L SL+A K+KR+ML+ L+DKT
Sbjct: 117 IYSEILDKYVKTIVTYRALQLIHDNYGFDHYVLKTKACDLRSLLALKLKREMLIQLWDKT 176

Query: 180 LYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVL 239
           LYP+D  K+E +Y KY+HYL NY+RE+IEWYG +  EA  K+I I+  A      PLK+ 
Sbjct: 177 LYPNDPIKQEEVYAKYEHYLPNYTREEIEWYGLTWKEACNKLIRIQTAAYKAE--PLKIK 234

Query: 240 FRKEMIEDLKQKKLEGTLNLEEEKTKPTSLLGKLNPFA 277
           FR++ I++L+Q+KLE     + +     S L KLNPF 
Sbjct: 235 FREQFIKELEQEKLEEQEENDNDVKSKRSWLSKLNPFG 272

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669062|ref|XP_001942935.1| PREDICTED: 39S ribosomal protein L28, mitochondrial-like [Acyrthosiphon pisum]

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 186/271 (68%), Gaps = 11/271 (4%)

Query: 7   LANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GV 65
           LANG ++ Y+ KKT   + +  +LPE+Y+KFY EW+ + P+PV+Y   PG++ K+ + G 
Sbjct: 5   LANGLKLLYIPKKTRISSGLGDRLPEAYKKFYKEWRHKVPEPVYYKPTPGKWTKDEKTGA 64

Query: 66  VVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEIL 125
           V+PV N PIP KY      GIWGGE+V++G+++  +KY+++ P +W P L   +VYSEIL
Sbjct: 65  VIPVQNIPIPLKYPKTMHSGIWGGEAVVQGFKQNGNKYKSRVPHFWTPTLKKSVVYSEIL 124

Query: 126 DKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDE 185
           ++Y++  VT++ +DLI+++YG D YLL+T AC+L + ++ KIKR +L+AL DKTLY DD 
Sbjct: 125 NEYMSTTVTEKALDLINKNYGLDHYLLKTAACDLRTTLSLKIKRHLLMALRDKTLYADDN 184

Query: 186 TKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMI 245
            K++ +Y+KYKHYL++Y+ E+IEWYG +  EA  K+  I+   E   K PLK  +R E+I
Sbjct: 185 VKQQEVYDKYKHYLKDYTHEEIEWYGLTFSEALLKMQDIDELNE--KKAPLKAKYRLELI 242

Query: 246 EDLKQKKLEGTLNLEEEKTKPTSLLGKLNPF 276
           E+LK         +EE+K    S L KLNPF
Sbjct: 243 EELKN----SNETIEEDK----SWLNKLNPF 265

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722845|ref|XP_003247689.1| PREDICTED: 39S ribosomal protein L28, mitochondrial-like [Acyrthosiphon pisum]

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 186/271 (68%), Gaps = 11/271 (4%)

Query: 7   LANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GV 65
           LANG ++ Y+ KKT   + +  +LPE+Y+KFY EW+ + P+PV+Y   PG++ K+ + G 
Sbjct: 5   LANGLKLLYIPKKTRISSGLGDRLPEAYKKFYKEWRHKVPEPVYYKPTPGKWTKDEKTGA 64

Query: 66  VVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEIL 125
           V+PV N PIP KY      GIWGGE+V++G+++  +KY+++ P +W P L   +VYSEIL
Sbjct: 65  VIPVQNIPIPLKYPKTMHSGIWGGEAVVQGFKQNGNKYKSRVPHFWTPTLKKSVVYSEIL 124

Query: 126 DKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDE 185
           ++Y++  VT++ +DLI+++YG D YLL+T AC+L + ++ KIKR +L+AL DKTLY DD 
Sbjct: 125 NEYVSTTVTEKALDLINKNYGLDHYLLKTAACDLRTTLSLKIKRHLLMALRDKTLYADDN 184

Query: 186 TKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMI 245
            K++ +Y+KYKHYL++Y+ E+IEWYG +  EA  K+  I+   E   K PLK  +R E+I
Sbjct: 185 VKQQEVYDKYKHYLKDYTHEEIEWYGLTFSEALLKMQDIDELNE--KKAPLKAKYRLELI 242

Query: 246 EDLKQKKLEGTLNLEEEKTKPTSLLGKLNPF 276
           E+LK         +EE+K    S L KLNPF
Sbjct: 243 EELKN----SNETIEEDK----SWLNKLNPF 265

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790943|dbj|BAH72000.1| ACYPI007188 [Acyrthosiphon pisum]

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 186/271 (68%), Gaps = 11/271 (4%)

Query: 7   LANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GV 65
           LANG ++ Y+ KKT   + +  +LPE+Y+KFY EW+ + P+PV+Y   PG++ K+ + G 
Sbjct: 5   LANGLKLLYIPKKTRISSGLGDRLPEAYKKFYKEWRHKVPEPVYYKPTPGKWTKDEKTGA 64

Query: 66  VVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEIL 125
           V+PV N PIP KY      GIWGGE+V++G+++  +KY+++ P +W P L   +VYSEIL
Sbjct: 65  VIPVQNIPIPLKYPKTMHSGIWGGEAVVQGFKQNGNKYKSRVPHFWTPTLKKSVVYSEIL 124

Query: 126 DKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDE 185
           ++Y++  VT++ +DLI+++YG D YLL+T AC+L + ++ KIKR +L+AL DKTLY DD 
Sbjct: 125 NEYMSTTVTEKALDLINKNYGLDHYLLKTAACDLRTTLSLKIKRHLLMALRDKTLYADDN 184

Query: 186 TKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMI 245
            K++ +Y+KYKHYL++Y+ E+IEWYG +  EA  K+  I+   E   K PLK  +R E+I
Sbjct: 185 VKQQEVYDKYKHYLKDYTHEEIEWYGLTFFEALLKMQDIDELNE--KKAPLKAKYRLELI 242

Query: 246 EDLKQKKLEGTLNLEEEKTKPTSLLGKLNPF 276
           E+LK         +EE+K    S L KLNPF
Sbjct: 243 EELKN----SNETIEEDK----SWLNKLNPF 265

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399652|ref|XP_003485601.1| PREDICTED: 39S ribosomal protein L28, mitochondrial-like [Bombus impatiens]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/280 (47%), Positives = 185/280 (66%), Gaps = 14/280 (5%)

Query: 2   LRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN 61
           +  KHL  G ++ Y+ + T +   I + LPE Y+KF+ EWKM+ P  VHY+E+ GRY KN
Sbjct: 1   MSMKHL--GKKLYYIPRPTRWTKGIGAALPEEYKKFWKEWKMQTPSAVHYIEQKGRYVKN 58

Query: 62  AQ-GVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIV 120
            + G V PV N P+P  Y  E   G+WGGE++I+G+ +  HKY  + P +W P L   +V
Sbjct: 59  EETGEVYPVQNVPLPLLYPKEFHEGLWGGEAIIQGFTK-KHKYARRYPRFWFPTLKKSVV 117

Query: 121 YSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTL 180
           YSE+LDKY++V VT RT+DLI+EHYGFD YLL+T AC+L S +A KIKR++LL+L DKTL
Sbjct: 118 YSEVLDKYISVVVTNRTIDLINEHYGFDHYLLKTPACDLKSELALKIKRQILLSLLDKTL 177

Query: 181 YPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKV-PLKVL 239
           YPDD  K+E IYNKYK YL  Y+R +IEWYG +  EA +K I   ++ E +++V PLK+ 
Sbjct: 178 YPDDPVKKEEIYNKYKEYLTAYTRGEIEWYGLTYKEACQKFI---KQNEEKNEVKPLKLQ 234

Query: 240 FRKEMIEDLKQKKLEGTLNLEEEKTKPTSLLGKLNPFAKS 279
           +R E+I  LK+++ +          KP+      NPF  S
Sbjct: 235 YRSELIAQLKEEESQIAAK------KPSVWKLPWNPFTSS 268

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712607|ref|XP_003394847.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L28, mitochondrial-like [Bombus terrestris]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/251 (49%), Positives = 173/251 (68%), Gaps = 8/251 (3%)

Query: 2   LRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN 61
           +  KHL  G ++ Y+ + T +   I + LPE Y+KF+ EWKM+ P  VHY+E+ GRY KN
Sbjct: 1   MSMKHL--GKKLYYIPRPTRWTKGIGAALPEEYKKFWKEWKMQTPSAVHYIEQKGRYVKN 58

Query: 62  AQGV-VVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIV 120
            +   V PV N P+P  Y  E   GIWGGE++I+G+ +  HK+  + P +W P L   +V
Sbjct: 59  EKTEEVYPVQNVPLPLLYPKEFHEGIWGGEAIIQGFTK-KHKFARRYPHFWFPTLKKSVV 117

Query: 121 YSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTL 180
           YSE+LDKY++V VT RT+DLI++HYGFD YLL+T A +L S +A KIKR++LL+L DKTL
Sbjct: 118 YSEVLDKYISVVVTNRTIDLINDHYGFDHYLLKTPAYDLKSELALKIKRQILLSLLDKTL 177

Query: 181 YPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKV-PLKVL 239
           YPDD  K+E IYNKYK YL  Y+R +IEWYG +  EA +K I   ++ E +++V PLK+ 
Sbjct: 178 YPDDPVKKEEIYNKYKEYLTAYTRGEIEWYGLTYKEACQKFI---KQNEDKNEVKPLKLQ 234

Query: 240 FRKEMIEDLKQ 250
           +R E+I  LK+
Sbjct: 235 YRSELIAQLKE 245

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797333|gb|EFZ19445.1| hypothetical protein SINV_00972 [Solenopsis invicta]

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 179/277 (64%), Gaps = 14/277 (5%)

Query: 12  RIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGV-VVPVI 70
           R+ Y+KK + +     ++LPE YRKF+ EWK++ P  VHY+++ G Y +N +   V PV 
Sbjct: 5   RLYYMKKISRWTAGTGAELPEEYRKFWREWKLQTPAAVHYIKQEGTYARNEETEEVYPVQ 64

Query: 71  NYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLN 130
           N PIP  Y  E D GIWGGE++++G+++    ++ + P +W+P L   +VYSE+LD Y+ 
Sbjct: 65  NVPIPLTYPKELDNGIWGGEAIVQGFKKKG-IFKRRVPHFWIPTLKKSVVYSEVLDTYMR 123

Query: 131 VPVTQRTVDLIHEHYGFDEYLL--------QTRACNLNSLIACKIKRKMLLALYDKTLYP 182
           V VT+R + LIHE+YGFD YLL        QT AC+L SL+A ++KR++L+AL DKTLYP
Sbjct: 124 VIVTERALRLIHENYGFDHYLLKLLTDHHLQTPACDLRSLLALRLKRQILIALADKTLYP 183

Query: 183 DDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRK 242
           +D  K   +Y KY+ YL  Y+RE+IEWYG +  EA  K I + +        PLK+ +R 
Sbjct: 184 NDPKKHTEVYAKYEQYLSAYTREEIEWYGLTFKEACMKWINLHKTEPQ----PLKIKYRS 239

Query: 243 EMIEDLKQKKLEGTLNLEEEKTKPTSLLGKLNPFAKS 279
           E+I  LK+ K++   N++    + TS + KLNPF+K+
Sbjct: 240 ELIAKLKENKIKEAENVDIVSPEETSWINKLNPFSKN 276

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013018|ref|XP_003690568.1| PREDICTED: 39S ribosomal protein L28, mitochondrial-like [Apis florea]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/271 (46%), Positives = 179/271 (66%), Gaps = 7/271 (2%)

Query: 10  GARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGV-VVP 68
             R+ Y+ K T +   I ++LP+ Y+KF+ EWK++ P  VHY+++ G+Y +N +   V P
Sbjct: 7   AKRLYYIPKPTRWSKGIGAELPQEYKKFWREWKIQIPTAVHYIKQEGKYVRNEETEEVYP 66

Query: 69  VINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKY 128
           V N P+P  Y  E   GIWGGE+VI+G+ +  +KY  + P +W P L   +VYSE+LD Y
Sbjct: 67  VQNVPLPLLYPKEFHQGIWGGEAVIQGFTK-KNKYARRHPHFWFPTLKKSVVYSEVLDTY 125

Query: 129 LNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKR 188
           L+V +T RT+DLI+EHYGFD YLL+T AC+L S +A KIKR++LL+L DKTLYP+D  KR
Sbjct: 126 LSVVITNRTIDLINEHYGFDHYLLKTPACDLKSELALKIKRQILLSLADKTLYPNDTVKR 185

Query: 189 ETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDL 248
           E IY KYK YL  Y+RE+IEWYG +  EA +K   I+++ + +   PLK+ FR E+I  L
Sbjct: 186 EEIYTKYKEYLTPYTREEIEWYGLTFKEACKK--WIKQKEQIKKVQPLKLQFRSELIAKL 243

Query: 249 KQKKLEGTLNLEEEKTKPTSLLGKLNPFAKS 279
           K+++ E      E   K ++     NPFA S
Sbjct: 244 KEEEAEKAKKTLE---KSSTWKLNWNPFASS 271

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110764475|ref|XP_395930.3| PREDICTED: 39S ribosomal protein L28, mitochondrial [Apis mellifera]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 168/245 (68%), Gaps = 6/245 (2%)

Query: 2   LRAKHLANGARIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN 61
           +  K LA   R+ Y+ K T +   I ++LP+ Y+KF+ EWK++ P  VHY+++ G+Y +N
Sbjct: 1   MSMKELAK--RLYYMPKPTRWSKGIGAELPQEYKKFWREWKIQIPTAVHYIKQEGKYVRN 58

Query: 62  AQGV-VVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIV 120
            +   V PV N P+P  Y  E   GIWGGE+VI+G+ +  +KY  + P +W P L   +V
Sbjct: 59  EETEEVYPVQNIPLPLLYPKEFHQGIWGGEAVIQGFTK-KNKYARRHPHFWFPTLKKSVV 117

Query: 121 YSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTL 180
           YSE+LD YL+V +T RT+DLI+EHYGFD YLL+T AC+L S +A KIKR++LL+L DKTL
Sbjct: 118 YSEVLDTYLSVVITNRTIDLINEHYGFDHYLLKTPACDLKSELALKIKRQILLSLADKTL 177

Query: 181 YPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLF 240
           YP+D  KRE IY KYK YL  Y+RE+IEWYG +  EA +K   I+++ + +   PLK+ F
Sbjct: 178 YPNDVVKREEIYTKYKEYLTPYTREEIEWYGLTFKEACKK--WIKQKEQVKKIQPLKLQF 235

Query: 241 RKEMI 245
           R E+I
Sbjct: 236 RSELI 240

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849354|ref|XP_003700310.1| PREDICTED: 39S ribosomal protein L28, mitochondrial-like [Megachile rotundata]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 165/235 (70%), Gaps = 2/235 (0%)

Query: 12  RIRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN-AQGVVVPVI 70
           R+ Y+ K + +   + ++LPE Y+KF+ EWK+++P PVHY+++ G Y ++    VV PV 
Sbjct: 9   RLYYIPKPSRWTKGLGAELPEEYKKFWKEWKLQQPSPVHYIKQEGSYIRDETTEVVRPVQ 68

Query: 71  NYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLN 130
           N P+P +Y  E   G+WGGE+VI+G+ +  H+Y  + P +W P L   +VYSE+LD+Y++
Sbjct: 69  NVPLPLRYPKEFHEGLWGGEAVIQGFTK-KHRYARRHPRFWFPLLKKSVVYSEVLDEYMS 127

Query: 131 VPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRET 190
             VT RT+ LI+EHYGFD YLL+T AC+L S +A KIKRK+L+AL DKTLYP+D  KRE 
Sbjct: 128 TVVTYRTIHLINEHYGFDHYLLKTPACDLKSELALKIKRKILVALADKTLYPNDSAKREE 187

Query: 191 IYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMI 245
           IY+KYK YL  Y+RE+IEWYG +  EA  K I  +++ + +   PLKV FR E+I
Sbjct: 188 IYDKYKDYLTAYTREEIEWYGLTYKEACHKWIKQKQKQQLQQIQPLKVKFRAELI 242

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
FB|FBgn0031660	302	mRpL28 "mitochondrial ribosoma	0.867	0.801	0.404	4.2e-49
UNIPROTKB|F1NTQ8	271	LOC100858238 "Uncharacterized	0.788	0.811	0.390	2.4e-35
UNIPROTKB|Q2HJJ1	256	MRPL28 "39S ribosomal protein	0.788	0.859	0.387	3.2e-33
RGD|1583741	257	Mrpl28 "mitochondrial ribosoma	0.817	0.887	0.362	1.3e-31
MGI|MGI:1915861	257	Mrpl28 "mitochondrial ribosoma	0.788	0.856	0.370	2e-31
WB|WBGene00020796	310	mrpl-28 [Caenorhabditis elegan	0.885	0.796	0.349	3.3e-31
UNIPROTKB|F1RGV8	256	MRPL28 "Uncharacterized protei	0.788	0.859	0.375	6.9e-31
UNIPROTKB|Q13084	256	MRPL28 "39S ribosomal protein	0.788	0.859	0.383	1.4e-30
UNIPROTKB|Q4TT38	256	MRPL28 "39S ribosomal protein	0.788	0.859	0.379	3e-30
ZFIN|ZDB-GENE-050522-113	252	mrpl28 "mitochondrial ribosoma	0.788	0.873	0.370	3e-30

FB|FBgn0031660 mRpL28 "mitochondrial ribosomal protein L28" [Drosophila melanogaster (taxid:7227)]

 Score = 484 (175.4 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 100/247 (40%), Positives = 158/247 (63%)

Query:    17 KKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN-AQGVVVPVINYPIP 75
             K+   FD  + ++LPE+YRKF+ EWK+  P  VHY+ +  +++++     + PV N P+P
Sbjct:    16 KRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLP 75

Query:    76 SKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQ 135
                T E   GIWGGE+VI+G+++   + + + P +WVP+L   +V+S +LD Y++V VT+
Sbjct:    76 LIDTPESHRGIWGGEAVIKGFQK-REQTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTE 134

Query:   136 RTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRET-IYNK 194
             RT++ IHE +GFD YLL+ RAC+L S +A K+KR++L AL +      DE +R+  +  +
Sbjct:   135 RTLEQIHECHGFDHYLLKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKE 194

Query:   195 YKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLE 254
             Y+ YLE Y+ E+I+WYG +  EA  K+    REAE    VP K+ FR ++IE L+Q  + 
Sbjct:   195 YRRYLEPYTPEEIDWYGHTYLEAIRKLQKQLREAE--KVVPHKLEFRGKLIEQLRQAGIS 252

Query:   255 GTLNLEE 261
                 LE+
Sbjct:   253 EAGKLEK 259

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0006412 "translation" evidence=NAS

UNIPROTKB|F1NTQ8 LOC100858238 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 91/233 (39%), Positives = 132/233 (56%)

Query:    26 IASKLPESYRKFYAEWKME-KPKPVHYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDL 84
             I ++LP     F A+   + +P PVH+     RY++N +G    V + P+P       D 
Sbjct:    47 ICARLPAH---FLAQLNDDTQPTPVHWRPLGVRYRRNPRGERERVQDVPVPVFLPRAADE 103

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE  I G+R   + K  T+ P+ W P L     YSEILD  L + VT RT+DLI +
Sbjct:   104 GLWGGEGWIRGFRYANNDKLSTRVPKIWKPQLFKRQFYSEILDAKLTITVTMRTLDLIDQ 163

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLALY--DKTLYPDDETKRETIYNKYKHYLEN 201
              YGFD Y+L+T   ++ S +   +KR MLL L   D  L+PDD  +RE IYNKY+ ++  
Sbjct:   164 AYGFDFYILKTPKADMCSKLGMDLKRTMLLRLARRDPKLHPDDPARREAIYNKYREFV-- 221

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLE 254
                E+ EW G SL EA EK  L+E+    +  VPL  ++ +E++  LK++ LE
Sbjct:   222 IPEEEAEWVGLSLEEAIEKQRLLEK----KDPVPLFKVYAEELVNQLKEQALE 270

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q2HJJ1 MRPL28 "39S ribosomal protein L28, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 90/232 (38%), Positives = 128/232 (55%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
             I S+LP  Y +   E +   P PVH+     ++K N + G    V + PIP  Y  E  L
Sbjct:    20 IYSRLPAHYLRSLEEART--PTPVHFRPHGAKFKINPKNGQRERVEDVPIPVHYPPESQL 77

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE  ++G+R   + K+  +  + W P L    +YSEILD    V VT RT+DLI E
Sbjct:    78 GLWGGEGWLKGHRYVNNDKFSKRVKKVWKPQLFQRELYSEILDTRFTVTVTMRTLDLIDE 137

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
              YGFD Y+L+T   +L S     +KR MLL L   D  L+PDD  +R  IY+KYK ++  
Sbjct:   138 AYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPDDPERRAAIYDKYKAFV-- 195

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
                 + EW G +L EA EK    +R  E +  VPL  ++ +E++E L+Q+ L
Sbjct:   196 IPEAEAEWVGLTLDEAVEK----QRLLEEKDPVPLFKVYVEELVEQLQQQAL 243

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1583741 Mrpl28 "mitochondrial ribosomal protein L28" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 87/240 (36%), Positives = 129/240 (53%)

Query:    18 KKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPS 76
             +K      I ++LP  + +   E +   P PVHY     ++K N + G    V + PIP 
Sbjct:    12 QKLRLQQGICARLPSHFLRSLEEERT--PTPVHYKPHGAKFKINPKNGQRERVEDVPIPV 69

Query:    77 KYTLEQDLGIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQ 135
              Y  E    +WGGE +I GYR   + K   +  + W P L    +YSEILDK   V VT 
Sbjct:    70 HYPPESQQELWGGEGLILGYRYANNDKLSNRVKKVWKPQLFTRELYSEILDKKFTVTVTM 129

Query:   136 RTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYN 193
             RT+DLI E YGFD Y+L+T   +L S     +KR MLL L   D  L+PD+  +R  IY+
Sbjct:   130 RTLDLIDEAYGFDFYILKTPEEDLCSKFGMDLKRGMLLRLARQDPQLHPDNPERRAAIYD 189

Query:   194 KYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
             KY++++      + EW G +L EA EK    +R  E +  VPL  ++ +E+++ L+++ L
Sbjct:   190 KYRNFV--IPEAEAEWVGLTLEEALEK----QRLLEEKDPVPLFKVYVEELVQRLQEQAL 243

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1915861 Mrpl28 "mitochondrial ribosomal protein L28" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 86/232 (37%), Positives = 127/232 (54%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
             I ++LP  + +   E +   P PVHY     ++K N + G    V + PIP  Y  E   
Sbjct:    20 ICARLPAHFLRSLEEERT--PTPVHYKPHGTKFKINPKNGQRERVEDVPIPVHYPPESQQ 77

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE +I GYR   + K   +  + W P L    +YSEILDK   V VT RT+DLI E
Sbjct:    78 GLWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDLIDE 137

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
              YGFD Y+L+T   +L S     +KR MLL L   D  L+P++  +R  IY+KY+ ++  
Sbjct:   138 AYGFDFYILKTPKEDLGSKFGMDLKRGMLLRLARQDPHLHPENPERRAAIYDKYRSFV-- 195

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
                 + EW G +L EA EK    +R  E +  VPL  ++ +E+++ L+++ L
Sbjct:   196 IPEAEAEWVGLTLEEALEK----QRLLEEKDPVPLFKVYVEELVQRLQEQVL 243

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

WB|WBGene00020796 mrpl-28 [Caenorhabditis elegans (taxid:6239)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 94/269 (34%), Positives = 142/269 (52%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNA-QGVVVPVINYPIPSKYTLEQDL 84
             +  +LPE Y+  Y E  +    PVHY     R+  ++ + V + +   PI    T E D 
Sbjct:    41 VVHRLPEHYKTRYWETILSDKTPVHYRPPTSRFAHDSFKNVEIELEENPIIGIRTPEGDD 100

Query:    85 GIWGGESVIEGYRRPAHKYETQP--PEYWVPHL----LDHIV-YSEILDKYLNVPVTQRT 137
             G+WGGE V++G+   A  Y  +   P YWVP L    L ++V YSEILDKY+ V VT+R 
Sbjct:   101 GLWGGERVVKGWIESA-PYTKKKILPRYWVPKLFFPALKNVVLYSEILDKYIKVTVTERA 159

Query:   138 VDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKH 197
             + LI EH+G D Y+L+++  +L+S  A  +KR+MLL L  ++ Y +++ K+  I  KY  
Sbjct:   160 MRLIDEHFGLDYYILESKEIDLDSKFANSLKREMLLTLTTESYYEENDEKKAYIKEKYAD 219

Query:   198 YLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLEGTL 257
             ++      + EW G  L EA  K   +E   ++ +  PLK  F + ++E L+    E + 
Sbjct:   220 FV--IPEREAEWIGLELNEAARKQQDME---DSTAPEPLKYKFEQSLLERLRDGTDEISQ 274

Query:   258 NLE--EEKTKPTS-----LLGK-LNPFAK 278
              LE  E   K  S     + GK LNP  K
Sbjct:   275 ELENPEAPMKTESKFGDKMFGKYLNPIGK 303

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

UNIPROTKB|F1RGV8 MRPL28 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 87/232 (37%), Positives = 124/232 (53%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVP-VINYPIPSKYTLEQDL 84
             I S+LP  Y +   E +   P PVHY     ++K N +      V + PIP  Y  E  L
Sbjct:    20 IYSRLPRHYLRSLEEART--PTPVHYRPHGAKFKINPKNWQRERVEDVPIPVHYPPESQL 77

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE  + G+R   + K   +  + W P L    +YSEILDK   V VT RT+DLI +
Sbjct:    78 GLWGGEGWVLGHRYVNNDKLSKRVRKVWKPQLFQRELYSEILDKRFTVTVTMRTLDLIDQ 137

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
               GFD Y+L+T   +L S     +KR MLL L   D  L+PDD  +R  IY++YK ++  
Sbjct:   138 ACGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPDDPARRAAIYDRYKAFV-- 195

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
                 + EW G +L EA EK    +R  E +  +PL  +F +E++  L+Q+ L
Sbjct:   196 IPEAEAEWVGLTLDEAVEK----QRLLEEKDPIPLFKIFVEELLGQLQQQAL 243

GO:0005739 "mitochondrion" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q13084 MRPL28 "39S ribosomal protein L28, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 89/232 (38%), Positives = 122/232 (52%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
             I S+LP  Y +   E +   P PVHY     ++K N + G    V + PIP  +  E   
Sbjct:    20 ICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQR 77

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE  I G     + K   +  + W P L +   YSEILDK   V VT RT+DLI E
Sbjct:    78 GLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDE 137

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
              YG D Y+L+T   +L S     +KR MLL L   D  L+P+D  +R  IY+KYK +   
Sbjct:   138 AYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAAIYDKYKEFA-- 195

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
                E+ EW G +L EA EK    +R  E +  VPL  ++  E+I+ L+Q+ L
Sbjct:   196 IPEEEAEWVGLTLEEAIEK----QRLLEEKDPVPLFKIYVAELIQQLQQQAL 243

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005761 "mitochondrial ribosome" evidence=IDA;NAS

GO:0006412 "translation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q4TT38 MRPL28 "39S ribosomal protein L28, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 88/232 (37%), Positives = 121/232 (52%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
             I S+LP  Y +   E +   P PVHY     ++K N + G    V + PIP  +  E   
Sbjct:    20 ICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQR 77

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE  I G     + K   +  + W P L +   YSEILDK   V VT RT+DLI E
Sbjct:    78 GLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDE 137

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
              YG D Y+L+    +L S     +KR MLL L   D  L+P+D  +R  IY+KYK +   
Sbjct:   138 AYGLDFYILKASGEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAAIYDKYKEFA-- 195

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
                E+ EW G +L EA EK    +R  E +  VPL  ++  E+I+ L+Q+ L
Sbjct:   196 IPEEEAEWVGLTLEEAIEK----QRLLEEKDPVPLFKIYVAELIQQLQQQAL 243

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-050522-113 mrpl28 "mitochondrial ribosomal protein L28" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 86/232 (37%), Positives = 122/232 (52%)

Query:    26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVP-VINYPIPSKYTLEQDL 84
             I ++LP+ Y +   +     P  VH+     +Y+ N        V + PIP  Y  E   
Sbjct:    20 IYARLPQHYLRSLQD--TSPPTTVHWKPLGVKYRINPDTRQRERVQDVPIPIYYPPESQD 77

Query:    85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
             G+WGGE  I G+R     K  T+ P+ W P L    +YSEILD+  +V VT R +DLI  
Sbjct:    78 GLWGGEGWISGFRYAKDDKLSTRLPKTWKPQLFTRELYSEILDQKFSVTVTSRALDLIDA 137

Query:   144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLALY--DKTLYPDDETKRETIYNKYKHYLEN 201
              +GFD Y+L+T   +LNS     +KR MLL L   D  LYP+D+ ++E IY +YK +   
Sbjct:   138 AFGFDFYILKTPKQDLNSKFGMNLKRAMLLRLARKDTDLYPEDQQRKEKIYKRYKQF--E 195

Query:   202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
                E+ EW G SL EA EK  L+E+    +   PL     K ++++L  KKL
Sbjct:   196 VPEEEAEWVGLSLEEAVEKQRLLEK----KDPEPLYKGLVKSLVQELALKKL 243

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VMX0	RM28_DROME	No assigned EC number	0.4039	0.8817	0.8145	yes	N/A
Q9D1B9	RM28_MOUSE	No assigned EC number	0.3706	0.7885	0.8560	yes	N/A
Q2HJJ1	RM28_BOVIN	No assigned EC number	0.3879	0.7885	0.8593	yes	N/A
Q13084	RM28_HUMAN	No assigned EC number	0.3761	0.7670	0.8359	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG3279|consensus	283		100.0
KOG3278|consensus	215		99.95
COG0227	77	RpmB Ribosomal protein L28 [Translation, ribosomal	99.87
PRK00359	76	rpmB 50S ribosomal protein L28; Reviewed	99.85
PF00830	61	Ribosomal_L28: Ribosomal L28 family; InterPro: IPR	99.81
CHL00112	63	rpl28 ribosomal protein L28; Provisional	99.64
TIGR00009	56	L28 ribosomal protein L28. This model describes ba	99.58

>KOG3279|consensus

Probab=100.00  E-value=3.2e-86  Score=594.17  Aligned_cols=268  Identities=39%  Similarity=0.736  Sum_probs=258.1

Q ss_pred             hhhhhhhhhc-hhcccccchhhhhcCcHHHHHHHHHHhhcCCCCcccccCCcceeeCC-CCccccccccCCCCCCCcccc
Q psy3482           6 HLANGARIRY-VKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNA-QGVVVPVINYPIPSKYTLEQD   83 (279)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~gi~~rLP~~Y~k~~~ew~~~~p~~Vhy~p~~~~~~~~~-tg~~~~v~~iPIp~~~pk~s~   83 (279)
                      --+||.++++ +.++.||+.|+++|||+||++||+||+|++|+||||+|++.+|.+|+ +....+||++|||+|.+|+++
T Consensus         4 ~tp~~~~~~~~w~~~~rf~~~~~~~lpe~y~~~~~e~~ls~~~~vhy~p~~~~~~~d~~~~~~~~~~~~p~~~i~tpe~~   83 (283)
T KOG3279|consen    4 ATPQGVKLLNGWKRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLPLIDTPESH   83 (283)
T ss_pred             CChhhHHHHHcccccchhhhhhhhhchHHHHHHHHHHhcCCCccccccChhhhhhhhhhhhhhhhhhcCCcccccCCccc
Confidence            3589999999 99999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             ccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCCccccCCHH
Q psy3482          84 LGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLI  163 (279)
Q Consensus        84 ~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~~~~L~S~~  163 (279)
                      +|||||++++.|+..|.. +++|++|+|.|||.+.++||++||++|+|+||+|||++||+++|||+|||+++.+||+|+|
T Consensus        84 ~g~wgge~vikg~~~~~~-tk~~~p~~wvp~l~~~v~~s~ild~y~~v~vteRtl~LIDE~~GLD~YILk~~~~DL~SKF  162 (283)
T KOG3279|consen   84 RGIWGGEAVIKGFQKREQ-TKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLELIDECHGLDHYILKNRACDLRSKF  162 (283)
T ss_pred             ccccccHHHHHHHHHHHH-HhhcCCcccccchhhHHHHHHHHhhhheeeehHHHHHHHHHhcCcceeeecCcchhHHHHH
Confidence            999999999999999884 5799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc-CCCCCChHhHHHHHHHhhhhccCCcchhhhhccCCHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy3482         164 ACKIKRKMLLALYDK-TLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRK  242 (279)
Q Consensus       164 g~~LKr~Il~~la~~-~l~p~d~~k~~~i~~kyk~f~~pyt~EEaeW~Gltl~EA~~Kq~~~e~~~~~~~p~Plk~~~~~  242 (279)
                      |++|||.||++|++. ++||+||++|++|++||+.|+||  +||||||||||+||++||+++|++.   +|+|||+.|+.
T Consensus       163 a~~LKReMLL~L~~~~p~~~E~pEr~A~I~~KY~~F~IP--EeEAEW~GLtL~EAirKQ~~lEe~~---~PvPLk~~f~~  237 (283)
T KOG3279|consen  163 ALKLKREMLLALQNGVPALAEEPERQAEILKKYRRFLIP--EEEAEWYGLTLLEAIRKQKQLEEAE---KPVPLKLEFRG  237 (283)
T ss_pred             HHHHHHHHHHHHhcCCCcccCChHHHHHHHHHHHHhcCC--HHHhhHhhhHHHHHHHHHHHHHhcc---CCccHHHHHHH
Confidence            999999999999999 59999999999999999999999  9999999999999999999999955   99999999999


Q ss_pred             HHHHHHHHhhhhccccccc-------cCCCCCccccccCCCCCC
Q psy3482         243 EMIEDLKQKKLEGTLNLEE-------EKTKPTSLLGKLNPFAKS  279 (279)
Q Consensus       243 ~Li~~L~~~~~~e~~~~~~-------~~~~~~swl~k~npf~~~  279 (279)
                      +||+||+++++++++..+.       +|+.++||++|||||||+
T Consensus       238 ~LieqLrq~~~~~~Q~Le~Pea~~K~eS~~~~~~~~k~np~gkk  281 (283)
T KOG3279|consen  238 KLIEQLRQAGISEAQKLEKPEALTKLESSPSSSWLSKINPFGKK  281 (283)
T ss_pred             HHHHHHHhhhhhHhhhhcCchhhhhcccCcchhhhhhcCCcccc
Confidence            9999999999988876653       788889999999999986

>KOG3278|consensus

Probab=99.95  E-value=4.3e-29  Score=220.04  Aligned_cols=121  Identities=21%  Similarity=0.332  Sum_probs=111.0

Q ss_pred             ccccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCCcccc
Q psy3482          80 LEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNL  159 (279)
Q Consensus        80 k~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~~~~L  159 (279)
                      .++++|||||..+++|||++.. .++||||.|+||+|.+.|||++||++|.|.||+++||||||+||||+||++|+++++
T Consensus        41 ~q~~~gLYgGs~iq~GNn~i~~-~g~KTRr~W~PNv~~K~L~S~il~~ki~vkvTt~vLrtIdKeGGiDeYL~K~~sar~  119 (215)
T KOG3278|consen   41 GQAKRGLYGGSHIQYGNNVIED-GGNKTRRCWKPNVQEKRLFSYILDSKIKVKVTTHVLRTIDKEGGIDEYLLKTPSARQ  119 (215)
T ss_pred             hhcccccccccceecCcccccc-cCcccceeecCcchhhHHHHHHHhhheeeeeehHHHhhhccccChhHHHhcCcHHHH
Confidence            6999999999999999997554 369999999999999999999999999999999999999999999999999999999


Q ss_pred             C--CHHHHHHHHHHHHHHhcc----CCCCCChHhHHHHHHHhhhhccC
Q psy3482         160 N--SLIACKIKRKMLLALYDK----TLYPDDETKRETIYNKYKHYLEN  201 (279)
Q Consensus       160 ~--S~~g~~LKr~Il~~la~~----~l~p~d~~k~~~i~~kyk~f~~p  201 (279)
                      +  +..|+.||..+|.+++.+    ...|.||+.+....+.|+..++.
T Consensus       120 K~lg~~G~~lr~~Vl~r~~ienp~~e~ap~~~~a~~k~~~~~kD~~i~  167 (215)
T KOG3278|consen  120 KMLGEMGLYLRTKVLARYAIENPQMEVAPFNPEAEAKLEQGFKDLNIA  167 (215)
T ss_pred             hhcccchHHHHHHHHHHhhccCCcccccCCCchhHHHHHHHHHHHHhc
Confidence            8  569999999999999844    55788899888888888888877

>COG0227 RpmB Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=7.2e-23  Score=158.75  Aligned_cols=73  Identities=14%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             cccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCC
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTR  155 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~  155 (279)
                      +|++|.++|+++++|||+||++  ++|+|+|.||||.++|||++++++++|+||++|||+||+.||+|+|+.+..
T Consensus         1 Msr~C~lTGk~~~~GnnvShs~--~kTkRr~~pNlq~~~~~~~~~g~~~~l~Vsa~~Lrtidk~G~~~~~~~~~~   73 (77)
T COG0227           1 MSRRCQLTGKGPMSGNNVSHSH--NKTKRRFLPNLQKVRFWSLSDGRFKRLRVSAKALRTIDKKGKIDAVLAKAR   73 (77)
T ss_pred             CCceeeeccccccccccccccc--cccceeecCccEEEEEEEccCCcEEEEEEEhHHhhccccccchhhhhhhhc
Confidence            5889999999999999999997  999999999999999999999999999999999999999999999999765

>PRK00359 rpmB 50S ribosomal protein L28; Reviewed

Probab=99.85  E-value=4.9e-22  Score=153.59  Aligned_cols=75  Identities=16%  Similarity=0.247  Sum_probs=70.6

Q ss_pred             cccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCCccc
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACN  158 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~~~~  158 (279)
                      +|+.|.++|+++++||+|||++  ++|+|.|.||||++++||++++++++++||+++||+|++.| ||+|++++....
T Consensus         1 Msr~C~i~GK~~~~Gn~vShs~--~kTkR~~~pNlq~~~~~~~~~g~~v~~~vst~~Lrti~k~G-l~~~~~~~~~~~   75 (76)
T PRK00359          1 MSRVCEITGKGPMVGNNVSHSN--NKTKRRFLPNLQKVRFWVEEEGRFVRLRVSARALRTIDKKG-LDAVLKKARARG   75 (76)
T ss_pred             CCCccccCCCCCccCCeeeecC--CccCceecccceEEEEEEccCCEEEEEEEEchheeeehhhh-HHHHHHhhhhcc
Confidence            4789999999999999999997  99999999999999999999999999999999999999995 999999876543

>PF00830 Ribosomal_L28: Ribosomal L28 family; InterPro: IPR001383 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.81  E-value=6.9e-21  Score=141.39  Aligned_cols=61  Identities=23%  Similarity=0.359  Sum_probs=56.7

Q ss_pred             cccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhcc
Q psy3482          83 DLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHY  145 (279)
Q Consensus        83 ~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~G  145 (279)
                      +.|+|+|+++++||+|||++  ++|+|.|.||||++++||++||++++|+||++|||+||+.|
T Consensus         1 r~c~~~GK~~~~Gn~vshs~--~ktkR~~~pNlq~~~~~~~~lg~~~~v~vst~~Lrti~k~G   61 (61)
T PF00830_consen    1 RRCLITGKKPMFGNNVSHSN--NKTKRRWKPNLQKKRLWSEILGKKIRVRVSTRALRTIDKKG   61 (61)
T ss_dssp             -S-TTT-CTTCEECEEEEEC--EEEEEEEBTTEEEEEEEESTTSSEEEEEEEHCHHHHHHCHT
T ss_pred             CEeecCCCeecccceEeecC--CcCCcEEcCcCEEEEEEEcCCCeEEEEEEEhHHeeeeccCC
Confidence            57999999999999999986  99999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L28 protein family include proteins from bacteria and chloroplasts. The L24 protein from yeast, found in the large subunit of the mitochodrial ribosome, contains a region similar to the bacterial L28 protein.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJP_U 3CF5_U 2ZJR_U 3PIP_U 3PIO_U 2ZJQ_U 3DLL_U 2Y15_1 3KIY_1 3V2D_1 ....

>CHL00112 rpl28 ribosomal protein L28; Provisional

Probab=99.64  E-value=1.4e-16  Score=119.53  Aligned_cols=62  Identities=8%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             cccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhc
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEH  144 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~  144 (279)
                      +|+.|...|+++++||+||||+  ++|+|+|.||||++++|++.++++++|+|+++|||+|++.
T Consensus         1 Msr~C~i~GK~~~~Gn~vSHs~--~kTkR~f~pNLq~vr~~~~~~~~~~kl~Vstr~Lrt~~k~   62 (63)
T CHL00112          1 MSKKCQLTGKKANNGYTVSHSH--KRTKKLQKVNLQTKKIWSNTQNRWVKLKISTKAIKTLKKK   62 (63)
T ss_pred             CCCeeccCCCcCccCceeEccC--cccCceecccccEEEEEECCCCeEEEEEEEHHHhhhcccc
Confidence            4788999999999999999997  9999999999999999999999999999999999999975

>TIGR00009 L28 ribosomal protein L28

Probab=99.58  E-value=1.3e-15  Score=111.62  Aligned_cols=56  Identities=11%  Similarity=0.225  Sum_probs=53.1

Q ss_pred             cccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhh
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDL  140 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrt  140 (279)
                      +|+.|.+.|+++++||+|||++  ++|+|.|.||||++++||+  +++++|+||++|||+
T Consensus         1 Ms~~C~i~GK~~~~Gn~vshs~--~ktkR~~~pNlq~~ri~~~--~~~~~~~vst~~Lkt   56 (56)
T TIGR00009         1 MSRKCQLTGKGPLSGNNVSHSH--RKTKRRFKPNLQKKRVWVD--GRFKRLRVSAKCLRT   56 (56)
T ss_pred             CCCEeeeCCCcCccCCeeeecC--CccCceecccceEEEEEEC--CEEEEEEEEcHHhcC
Confidence            4788999999999999999997  9999999999999999999  599999999999985

This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 64/232 (27%)

Query: 12  RIRYVKKKTAFDTEIASKLPESYRKFYAE------------------W-KMEKPKPVHYV 52
            +   K  T  ++ +    P  YRK +                    W  + K   +  V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 53  EEPGRY---KKNAQGVVVPV------INYPIPSKYTLEQDLGIWGGESVIEGYRRPA--- 100
            +  +Y   +K  +   + +      +   + ++Y L +        S+++ Y  P    
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVDHYNIPKTFD 460

Query: 101 HKYETQPPE--YWVPHLLDHIVYSEILDK-------YLNVPVTQRTVDLIHEHYGFDEYL 151
                 P    Y+  H+  H+   E  ++       +L+    ++   + H     D   
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRH-----DSTA 513

Query: 152 LQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYS 203
                  LN+L          L  Y   +  D++ K E + N    +L    
Sbjct: 514 WNASGSILNTLQQ--------LKFYKPYIC-DNDPKYERLVNAILDFLPKIE 556

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3r8s_X	77	50S ribosomal protein L28; protein biosynthesis, R	99.87
3bbo_Y	151	Ribosomal protein L28; large ribosomal subunit, sp	99.81
2zjr_U	81	50S ribosomal protein L28; ribosome, large ribosom	99.7
2jz6_A	77	50S ribosomal protein L28; structure, NESG, ribonu	99.66
2jl6_1	89	50S ribosomal protein L28, 50S ribosomal protein L	99.58
3v2d_1	98	50S ribosomal protein L28; ribosome associated inh	99.57

>3r8s_X 50S ribosomal protein L28; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2i2v_X 2wwq_0* 3fik_X 3j01_X 3j0t_Z* 3j0w_Z* 3j0y_Z* 3j11_Z* 3j12_Z* 3j14_Z* 3j19_X 3oas_X 3oat_X* 2i2t_X* 3ofd_X 3ofc_X 3ofr_X* 3ofz_X* 3og0_X 3ofq_X ...

Probab=99.87  E-value=3.9e-23  Score=159.03  Aligned_cols=70  Identities=17%  Similarity=0.345  Sum_probs=67.2

Q ss_pred             ccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcC
Q psy3482          82 QDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQT  154 (279)
Q Consensus        82 s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT  154 (279)
                      |+.|...|+++++||+||||+  ++|+|+|.||||++++||+.++++++|+|||+|||+||+. |||+||+..
T Consensus         1 sr~C~itGK~~~~Gn~VShs~--~kTkR~~~PNlq~~r~~~~~~~r~~rlrVst~~LRti~k~-Gld~~l~~~   70 (77)
T 3r8s_X            1 SRVCQVTGKRPVTGNNRSHAL--NATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKK-GIDTVLAEL   70 (77)
T ss_dssp             CCCCTTTCCCCEEEEEECSSC--CEEEEEECCCEEEEEEEEGGGTEEEEEEEEHHHHHHHHHH-CHHHHHHHH
T ss_pred             CCEeeeCCCccccCceEeccC--CccCceecCccEEEEEEECCCCEEEEEEEEcceEeeeccc-CHHHHHHHH
Confidence            578999999999999999997  9999999999999999999999999999999999999999 999999753

>3bbo_Y Ribosomal protein L28; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.81  E-value=1.2e-21  Score=167.08  Aligned_cols=76  Identities=11%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CCCCccccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcC
Q psy3482          76 SKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQT  154 (279)
Q Consensus        76 ~~~pk~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT  154 (279)
                      .+++..++.|.++|+++++||+|||++  +||+|+|+||||++++|++.++++++|+||++|||+||+. |||+||++.
T Consensus        69 ~~~~mMsR~C~itGK~p~~GNnVSHS~--~KTKRrw~PNLQkvri~~~~g~r~vrlrVsTr~LRTikk~-GlD~~l~~~  144 (151)
T 3bbo_Y           69 SLQPVARRICPFTGKKSNRANKVSHSN--HKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKN-GLDAVAKKA  144 (151)
T ss_dssp             -------CCCCCSCCTTCCCCCCEECC--SSSCCEECCCCCCCCBCCCTTSSCCCBCCCSSSTTTTTTS-TTTCSCCSS
T ss_pred             ccccchhceeeccCcccccCCeeeecC--CccCceeccccEEEEEEECCCCEEEEEEEEchheeehhhh-hHHHHHHHh
Confidence            446668889999999999999999997  9999999999999999999999999999999999999999 999999864

>2zjr_U 50S ribosomal protein L28; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.325.1.1 PDB: 2zjp_U 2zjq_U 3cf5_U* 3dll_U* 3pio_U* 3pip_U*

Probab=99.70  E-value=9.5e-19  Score=135.90  Aligned_cols=66  Identities=6%  Similarity=-0.098  Sum_probs=56.5

Q ss_pred             cccccccccceeecccccCC-------------CCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccCh
Q psy3482          81 EQDLGIWGGESVIEGYRRPA-------------HKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGF  147 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~-------------s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGl  147 (279)
                      +|+.|...|+++++||+|||             ++  ++|+|+|+||||++++|  +++++++|+||++|||+||+  ||
T Consensus         1 Msr~C~itGK~~~~Gn~vshrGkak~~Gg~~s~s~--~kTkR~~~PNlq~vr~~--~~g~~~~l~Vst~~LRti~k--Gl   74 (81)
T 2zjr_U            1 MSRECYLTGKKNLVVNSVIRRGKARADGGVGRKTT--GITKRVQRANLHKKAIR--ENGQVKTVWLSANALRTLSK--GP   74 (81)
T ss_dssp             -------CCSSSCCCCCCCCCCEESCCCTTTCSCC--EECCCCCCCCCCCCCCC--CSSSCCCCCCCHHHHHHHHS--SC
T ss_pred             CCCEeecCCCccccCCeeeeccccccccccchhhC--CccCceecccceEEEEE--ECCEEEEEEEEcceeeeech--hH
Confidence            47789999999999999999             86  99999999999999999  58999999999999999999  99


Q ss_pred             hHHhh
Q psy3482         148 DEYLL  152 (279)
Q Consensus       148 D~YLL  152 (279)
                      |+++.
T Consensus        75 d~~~~   79 (81)
T 2zjr_U           75 YKGIE   79 (81)
T ss_dssp             CSSCC
T ss_pred             HHHHh
Confidence            99874

>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1

Probab=99.66  E-value=6.8e-17  Score=124.45  Aligned_cols=60  Identities=10%  Similarity=0.005  Sum_probs=57.3

Q ss_pred             cccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhh
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE  143 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk  143 (279)
                      +|+.|.+.|+++++||+|||++  ++|+|+|+||||++++|++. +++++|+||++|||++.-
T Consensus         6 Msr~C~itGK~~~~Gn~VSHS~--~kTkR~~~PNLq~vr~~~~~-g~~~rl~Vst~~LRtgkv   65 (77)
T 2jz6_A            6 MAKRCEVCGKAPRSGNTVSHSD--KKSERWFRPNLQKVRVVLPD-GTIKRMRVCTSCLKSGKV   65 (77)
T ss_dssp             CCCCCTTTCCCCCCCCCCCCSC--CCCSSSCBTTEEEEEEEETT-TEEEEEEEEHHHHHHCCS
T ss_pred             eeeeeeecCCccccCCeEeecC--CccCcccccceEEEEEEecC-CcEEEEEEEhHHeeeccE
Confidence            7899999999999999999997  99999999999999999976 999999999999999873

>3v2d_1 50S ribosomal protein L28; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_1 2v47_1 2v49_1 2wdi_1 2wdj_1 2wdl_1 2wdn_1 2wh2_1 2wh4_1 2wrj_1 2wrl_1 2wro_1 2wrr_1 2x9s_1 2x9u_1 2xqe_1 2xtg_1 2xux_1 2y0v_1 2y0x_1 ...

Probab=99.57  E-value=8.1e-16  Score=123.07  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             cccccccccceeecccccCCCCCC------------CCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChh
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYE------------TQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFD  148 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~------------~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD  148 (279)
                      +|+.|...|+++++||+|||++ +            ++|+|+|.||||++++|+  .+++++++||++|||+||+.    
T Consensus         1 Msr~C~itGK~p~~Gn~VShs~-~Ak~~GGvG~k~t~kTkR~f~PNLqkvr~~~--~G~~~rlrVst~~LRtI~~~----   73 (98)
T 3v2d_1            1 MSKVCEISGKRPIVANSIQRRG-KAKREGGVGKKTTGISKRRQYPNLQKVRVRV--AGQEITFRVAASHIPKVYEL----   73 (98)
T ss_dssp             -CCCCTTTCCCCEEEEEEEEEE-ECGGGTSSEEEEEEEEEEEECCCEEEEEEEE--TTEEEEEEEEGGGHHHHHHH----
T ss_pred             CCCeeecCCCccccCccEeccC-ccccccccccccCCcccceeccceEEEEEEE--CCEEEEEEEEchhheehhhh----
Confidence            4789999999999999999996 2            499999999999999999  49999999999999999853    


Q ss_pred             HHhhcCCccccCCHHHHHHHHHHHH
Q psy3482         149 EYLLQTRACNLNSLIACKIKRKMLL  173 (279)
Q Consensus       149 ~YLLkT~~~~L~S~~g~~LKr~Il~  173 (279)
                        +-..+.-+|.+...-++|.++|+
T Consensus        74 --verakg~~~~~l~~k~~~~~~~~   96 (98)
T 3v2d_1           74 --VERAKGLKLEGLSPKEIKKELLK   96 (98)
T ss_dssp             --HHHGGGSCCSSCCHHHHHHHHHH
T ss_pred             --hhhhhcccccCCCHHHHHHHHHh
Confidence              44455667778888888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d2qamz1	77	d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {E	0.003

>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Escherichia coli [TaxId: 562]

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 111 WVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRA 156
           ++P+L  H  + E   +++ + V+ + + +I +  G D  L + RA
Sbjct: 28  FLPNLHSHRFWVESEKRFVTLRVSAKGMRVI-DKKGIDTVLAELRA 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d2qamz1	77	Ribosomal protein L28 (L28p) {Escherichia coli [Ta	99.9
d2jz6a1	70	Ribosomal protein L28 (L28p) {Thermotoga maritima	99.8
d2j0111	89	Ribosomal protein L28 (L28p) {Thermus thermophilus	99.68
d2zjru1	72	Ribosomal protein L28 (L28p) {Deinococcus radiodur	99.63

>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.8e-25  Score=169.26  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=71.8

Q ss_pred             ccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCCcccc
Q psy3482          82 QDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNL  159 (279)
Q Consensus        82 s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~~~~L  159 (279)
                      |+.|...|+++++||+|||++  ++|+|+|.||||++++||++|+++|+|+||++||||||+ ||||+||+++++..+
T Consensus         1 Sr~C~itGK~~~~Gn~vShs~--~kTkR~~~pNlq~kr~~~~~~~~~v~lkvstk~LRtI~K-~Gld~~l~k~~~~g~   75 (77)
T d2qamz1           1 SRVCQVTGKRPVTGNNRSHAL--NATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDK-KGIDTVLAELRARGE   75 (77)
T ss_dssp             CCCCSSSCCCCCCCBCCBGGG--BCCBCCCCCCCCCEECCCSTTCCCCEECCCTTHHHHHTT-SCHHHHHHTTTTTTC
T ss_pred             CCCcccCCCccccCceeeecc--cccCceeccceEEEEEEEcCCCEEEEEEEEhhheeeehh-CCHHHHHHHHHHccC
Confidence            678999999999999999997  999999999999999999999999999999999999999 899999999887655

>d2jz6a1 d.325.1.1 (A:6-75) Ribosomal protein L28 (L28p) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=2.1e-20  Score=139.80  Aligned_cols=69  Identities=12%  Similarity=0.054  Sum_probs=65.5

Q ss_pred             cccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCCc
Q psy3482          81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRA  156 (279)
Q Consensus        81 ~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~~  156 (279)
                      +|+.|...|+++++||+|||++  ++|+|+|.||||++++||+. +++++|+||++|||+    ||||.|++++++
T Consensus         1 Mar~C~itGK~~~~Gn~vShs~--~kTkR~f~PNlq~~r~~~~~-g~~v~~kvst~~lrt----g~v~k~~~~~~~   69 (70)
T d2jz6a1           1 MAKRCEVCGKAPRSGNTVSHSD--KKSERWFRPNLQKVRVVLPD-GTIKRMRVCTSCLKS----GKVKKYVGQVSE   69 (70)
T ss_dssp             CCCCCTTTCCCCCCCCCCCCSC--CCCSSSCBTTEEEEEEEETT-TEEEEEEEEHHHHHH----CCSCCCCCCCCS
T ss_pred             CCcEeeecCCccccCCeEEecC--cccCceecCCeEEEEEEecC-CCEEEEEEEHHHhhh----cCHHHHhHhhcc
Confidence            4789999999999999999997  99999999999999999996 999999999999998    999999998875

>d2j0111 d.325.1.1 (1:8-96) Ribosomal protein L28 (L28p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1e-18  Score=135.95  Aligned_cols=84  Identities=15%  Similarity=0.079  Sum_probs=72.4

Q ss_pred             CccccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhhccChhHHhhcCCccc
Q psy3482          79 TLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACN  158 (279)
Q Consensus        79 pk~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk~GGlD~YLLkT~~~~  158 (279)
                      |-..+.+-.-|++.+.||++||++  ++|+|+|+||||++++|++  +++++|+||++|||+|++.||+|+||   ..+.
T Consensus         5 p~~Gn~v~~~Gk~~~~G~~vshs~--~kTkRrf~PNLq~vr~~v~--g~~~~lrVst~alRti~k~~g~~~~l---k~~~   77 (89)
T d2j0111           5 PIVANSIQRRGKAKREGGVGKKTT--GISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKVYELVERAKGL---KLEG   77 (89)
T ss_dssp             SSCCCCCCCCCEECSCCSSSSCCC--EEECCCCCCCCCCCCEEET--TTTEEECCCSSSHHHHHHHHSCCCCC---CCCS
T ss_pred             cccCceEEecCcccccCCceeecc--ccccceecCCceEEEEEEC--CEEEEEEEEHHHHHhHHhhhhHHHHH---HHcC
Confidence            445667777899999999999997  9999999999999999977  79999999999999999999999999   3334


Q ss_pred             cCCHHHHHHHHHHH
Q psy3482         159 LNSLIACKIKRKML  172 (279)
Q Consensus       159 L~S~~g~~LKr~Il  172 (279)
                      |   ....+|++|+
T Consensus        78 l---~~~~~k~~~~   88 (89)
T d2j0111          78 L---SPKEIKKELL   88 (89)
T ss_dssp             C---CHHHHHHHCC
T ss_pred             C---CHHHHHHHhh
Confidence            4   4557777765

>d2zjru1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.63  E-value=1.3e-17  Score=125.14  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             CCccccccccccceeecccccCCCCCCCCCCcccccceeEEEEeEeccCcEeEEeeehhHHhhhhh--ccChh
Q psy3482          78 YTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE--HYGFD  148 (279)
Q Consensus        78 ~pk~s~~GL~gGk~i~~Gn~vS~s~~~~KtrR~w~PNL~~k~lySeiLdk~i~l~VTtraLrtIdk--~GGlD  148 (279)
                      -|-.++.|.+.|++.+.||++||++  ++|+|+|+||||++++||+  +++++|+||++|||+|||  .+|+|
T Consensus         4 ~~~~~~~~~~~GK~~~~Gn~vsh~~--~~TkR~f~PNLq~~ri~~~--g~~~klkVst~~lRtI~K~~~~~~~   72 (72)
T d2zjru1           4 KNLVVNSVIRRGKARADGGVGRKTT--GITKRVQRANLHKKAIREN--GQVKTVWLSANALRTLSKGPYKGIE   72 (72)
T ss_dssp             SSCCCCCCCCCCEESCCCTTTCSCC--EECCCCCCCCCCCCCCCCS--SSCCCCCCCHHHHHHHHSSCCSSCC
T ss_pred             cceecCEEEEeccccccCCceeecC--CccCceeccccEEEEEEEC--CEeEEEEEEhHheeeecccccccCC
Confidence            4668999999999999999999997  9999999999999999998  789999999999999999  55554