Psyllid ID: psy3495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MCDITIFSDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPREEEAEDEEDSVFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQVYCIFSTDDEHDTDSSTSEVDEGVPNLPPRTSPSSLPPVDENSTTPLPNSKCQDALSQVVATKQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHccHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEcccccccccccccccccccccccccccccccHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
mcditifsdfvsdeedfevdgEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSelescdnpqeLQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMArcstgppvhdsgprlgglpreeeaedeedsvfydanevmtenggldpagrgllepvrypysphfpscslmtQVYCIFstddehdtdsstsevdegvpnlpprtspsslppvdensttplpnskcqdALSQVVATKQ
Flexible Loop (DISEMBL)
mcditifsdfvsdeedfeVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARcstgppvhdsgprLGGLPREEEAEDEEDSVFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQVYCIFSTDDEHDTDSStsevdegvpnlpprtspsslppVDENSttplpnskcqdalsqvvatkq
Low Complexity Region (SEG)
MCDITIfsdfvsdeedfevdgevKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPReeeaedeedSVFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQVYCIFstddehdtdsstsevdeGVpnlpprtspsslppVDENSTTPLPNSKCQDALSQVVATKQ
Disordered region (IsUnstruct)
**DITIFSDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRM******************************************************************AGRGLLEPVRYPYSPHFPSCSLMTQVYCIFS**********************************************************
Disordered Region (DISOPRED)
******************************TLSVNLEQLQSYNEIINKHGAALLRTLS****************EINERATLFRITTNAMINSCGKYLEIAQTQG*******************************************************VFYDANEV*******************************************************************************************QV*****
Disordered Region (DISEMBL)
MCDITIFSDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPR*********SVFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQVYCIFSTD**************************************LPNSKCQ***********
Disordered Region (DISPRO)
******************VDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCS***************************VFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQVYCIFSTDDE******TSEVDEGVPN********SLP*****STTPLPNSKCQDALSQVVA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCDITIFSDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPREEEAEDEEDSVFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQVYCIFSTDDEHDTDSSTSEVDEGVPNLPPRTSPSSLPPVDENSTTPLPNSKCQDALSQVVATKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
P16258	809	Oxysterol-binding protein	yes	N/A	0.657	0.216	0.432	3e-33
P22059	807	Oxysterol-binding protein	yes	N/A	0.657	0.216	0.421	3e-31
Q3B7Z2	805	Oxysterol-binding protein	yes	N/A	0.657	0.217	0.416	9e-31
Q5QNQ6	908	Oxysterol-binding protein	no	N/A	0.537	0.157	0.442	2e-27
Q969R2	916	Oxysterol-binding protein	no	N/A	0.402	0.116	0.514	7e-26

>sp|P16258|OSBP1_RABIT Oxysterol-binding protein 1 OS=Oryctolagus cuniculus GN=OSBP PE=1 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 192 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 251

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 252 ESNEKIKQVNERATLFRITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLE 311

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P H SG    G       + + +++++++ F+DA E++T  
Sbjct: 312 QLAKQHNHLERAFRGATVLPAHTSGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 371

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 372 ENLGHKRTGSNI 383

Binds cholesterol and a range of oxysterols. Cholesterol binding promotes the formation of a complex with PP2A and a tyrosine phosphatase which dephosphorylate ERK1/2, whereas 25-hydroxycholesterol causes its disassembly. Regulates cholesterol efflux by decreasing ABCA1 stability.
Oryctolagus cuniculus (taxid: 9986)

>sp|P22059|OSBP1_HUMAN Oxysterol-binding protein 1 OS=Homo sapiens GN=OSBP PE=1 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 190 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 249

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 250 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 309

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P +  G    G       + + +++++++ F+DA E++T  
Sbjct: 310 QLAKQHNHLERAFRGATVLPANTPGNVGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 369

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 370 ENLGHKRTGSNI 381

Binds cholesterol and a range of oxysterols. Cholesterol binding promotes the formation of a complex with PP2A and a tyrosine phosphatase which dephosphorylate ERK1/2, whereas 25-hydroxycholesterol causes its disassembly. Regulates cholesterol efflux by decreasing ABCA1 stability.

Homo sapiens (taxid: 9606)

>sp|Q3B7Z2|OSBP1_MOUSE Oxysterol-binding protein 1 OS=Mus musculus GN=Osbp PE=1 SV=3

 Score =  134 bits (336), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 118/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L++ ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 188 SDDSGDEESVSQTDKTELQSTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 247

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 248 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 307

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P +  G    G       + + +++++++ F+DA E++T  
Sbjct: 308 QLAKQHNHLERAFRGATVLPANPPGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 367

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 368 ENLGHKRTGSNI 379

Binds cholesterol and a range of oxysterols. Cholesterol binding promotes the formation of a complex with PP2A and a tyrosine phosphatase which dephosphorylate ERK1/2, whereas 25-hydroxycholesterol causes its disassembly. Regulates cholesterol efflux by decreasing ABCA1 stability.

Mus musculus (taxid: 10090)

>sp|Q5QNQ6|OSBP2_MOUSE Oxysterol-binding protein 2 OS=Mus musculus GN=Osbp2 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 13/156 (8%)

Query: 25  LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFR 84
           L + +KTLS+ L  L + N++I KHGAAL R+L+EL+S   P E   ++K +NERATLFR
Sbjct: 300 LHHTLKTLSLKLNDLSTCNDLIAKHGAALQRSLNELDSLKIPSECGEKLKVVNERATLFR 359

Query: 85  ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR---------CST- 134
           IT+NAMIN+C  +LE+A+T   KWQR L +E++QR+ LEE +EQ+A+         C+T 
Sbjct: 360 ITSNAMINACRDFLELAETHSRKWQRALNYEQEQRVHLEETIEQLAKQHNSLERAFCNTP 419

Query: 135 -GPPVHDSGPRLGGL--PREEEAEDEEDSVFYDANE 167
            GP         G     + E +E++ED+ ++DA E
Sbjct: 420 GGPASSSKSFSEGSFLTSKGENSEEDEDTEYFDAME 455

Binds 7-ketocholesterol.

Mus musculus (taxid: 10090)

>sp|Q969R2|OSBP2_HUMAN Oxysterol-binding protein 2 OS=Homo sapiens GN=OSBP2 PE=1 SV=2

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 80/107 (74%)

Query: 25  LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFR 84
           L + +K LS+ L+ L + N++I KHGAAL R+L+EL+    P E   ++K +NERATLFR
Sbjct: 302 LHHTLKNLSLKLDDLSTCNDLIAKHGAALQRSLTELDGLKIPSESGEKLKVVNERATLFR 361

Query: 85  ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
           IT+NAMIN+C  +LE+A+    KWQR LQ+E++QR+ LEE +EQ+A+
Sbjct: 362 ITSNAMINACRDFLELAEIHSRKWQRALQYEQEQRVHLEETIEQLAK 408

Binds 7-ketocholesterol.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
242010905	794	Oxysterol-binding protein, putative [Ped	0.545	0.182	0.486	1e-31
126722857	809	oxysterol-binding protein 1 [Oryctolagus	0.657	0.216	0.432	2e-31
432104550	751	Oxysterol-binding protein 1 [Myotis davi	0.657	0.233	0.432	5e-31
443699632	772	hypothetical protein CAPTEDRAFT_179200 [	0.597	0.205	0.458	2e-30
291230402	715	PREDICTED: predicted protein-like [Sacco	0.515	0.191	0.496	2e-30
440897533	621	Oxysterol-binding protein 1, partial [Bo	0.646	0.276	0.434	3e-30
157821663	682	oxysterol-binding protein 1 [Rattus norv	0.657	0.256	0.421	7e-30
149638687	738	PREDICTED: oxysterol-binding protein 1-l	0.466	0.168	0.548	7e-30
395858115	807	PREDICTED: oxysterol-binding protein 1 [	0.657	0.216	0.421	7e-30
301788572	760	PREDICTED: oxysterol-binding protein 1-l	0.657	0.230	0.421	8e-30

>gi|242010905|ref|XP_002426198.1| Oxysterol-binding protein, putative [Pediculus humanus corporis] gi|212510249|gb|EEB13460.1| Oxysterol-binding protein, putative [Pediculus humanus corporis]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 105/150 (70%), Gaps = 5/150 (3%)

Query: 19  VDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINE 78
            + + +L   I TLS  L+ LQ  +E+I KHG AL R+LSELES +  Q++  +IK +NE
Sbjct: 122 ANHKAQLMEAINTLSAKLKNLQVCSELIEKHGTALQRSLSELESLNTAQDMSVKIKAVNE 181

Query: 79  RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPV 138
           RATLFRIT+NA +++C +YL++AQ+QG KWQ+MLQHERDQR +LEE++EQ+AR  +    
Sbjct: 182 RATLFRITSNATLHACSEYLDLAQSQGKKWQKMLQHERDQRQRLEEMVEQLARQHSNL-- 239

Query: 139 HDSGPRLGGLPREEEAEDEED--SVFYDAN 166
            +   +   LPR+  +  +ED  + FYDAN
Sbjct: 240 -EQAAKDHRLPRQTASPSDEDDGNEFYDAN 268

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126722857|ref|NP_001075702.1| oxysterol-binding protein 1 [Oryctolagus cuniculus] gi|129309|sp|P16258.1|OSBP1_RABIT RecName: Full=Oxysterol-binding protein 1 gi|165565|gb|AAA31427.1| oxysterol-binding protein [Oryctolagus cuniculus]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 192 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 251

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 252 ESNEKIKQVNERATLFRITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLE 311

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P H SG    G       + + +++++++ F+DA E++T  
Sbjct: 312 QLAKQHNHLERAFRGATVLPAHTSGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 371

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 372 ENLGHKRTGSNI 383

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432104550|gb|ELK31163.1| Oxysterol-binding protein 1 [Myotis davidii]

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 134 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLRLPA 193

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 194 ESNEKIKQVNERATLFRITSNAMINACRDFLTLAQTHSKKWQKSLQYERDQRIRLEETLE 253

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P H SG    G       + + +++++++ F+DA E++T  
Sbjct: 254 QLAKQHNHLERAFRGATVLPAHPSGSAGPGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 313

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 314 ENLGHKRTGSNI 325

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443699632|gb|ELT99009.1| hypothetical protein CAPTEDRAFT_179200 [Capitella teleta]

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 108/170 (63%), Gaps = 11/170 (6%)

Query: 12  SDEEDFEVDGE---VKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQE 68
           SD+ED E   +    +L+N I+TLS  LE L + N++I KHGAAL + L ELE  +   E
Sbjct: 110 SDDEDEETHTQPDKNELQNTIRTLSAKLEDLSTCNDLITKHGAALQKALGELEQIEAASE 169

Query: 69  LQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQ 128
              + K +NERATLFRIT+NAMIN+C  YLE+AQTQG +WQ++LQ E +Q+L+LEE++EQ
Sbjct: 170 ASAKFKSVNERATLFRITSNAMINACHDYLELAQTQGKRWQKLLQSEHEQKLRLEEMVEQ 229

Query: 129 MA-------RCSTGPPVHDSGPRLGGLPREEEAEDEEDSVFYDANEVMTE 171
           +A       + +     H +    G     E +EDEED  F+DA +  TE
Sbjct: 230 LAKQHQSIEKQARKSLAHANHSSSGNTQGAEGSEDEEDD-FFDAVDDHTE 278

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|291230402|ref|XP_002735155.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 99/153 (64%), Gaps = 16/153 (10%)

Query: 25  LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFR 84
           ++N ++ LS  LE L + N++I KHGAAL R+LSELE   +P E   +IK +NERATLFR
Sbjct: 127 IQNTLRMLSSKLEDLTTCNDLIAKHGAALQRSLSELELIQDPAEASTKIKAVNERATLFR 186

Query: 85  ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMA----------RCST 134
           IT+NAMIN+C  YL++AQTQG KWQR LQ+ER+QRL+LEE +E +A          R + 
Sbjct: 187 ITSNAMINACADYLDLAQTQGRKWQRALQYEREQRLRLEETVETLAKQHNTLERACRGNL 246

Query: 135 GPPVHDSGPRLGGLPREEEAEDEEDSVFYDANE 167
           GP   D G   G    E   +D E   F+DA E
Sbjct: 247 GP---DKGKSKGSATEEFSDDDNE---FFDAIE 273

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|440897533|gb|ELR49195.1| Oxysterol-binding protein 1, partial [Bos grunniens mutus]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 117/184 (63%), Gaps = 12/184 (6%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELE+   P 
Sbjct: 70  SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELEALRLPA 129

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 130 ESSEKIKQVNERATLFRITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLE 189

Query: 128 QMARCSTGPPVHDSGPRLGGLPREEE-------AEDEEDSVFYDANEVMT--ENGGLDPA 178
           Q+A+        D   RL  LP ++        +++++++ F+DA E++T  EN G    
Sbjct: 190 QLAKQHNHL---DERTRLVPLPADQSCSGKGDLSDEDDENEFFDAPEIITVPENLGHKRT 246

Query: 179 GRGL 182
           G  +
Sbjct: 247 GSNI 250

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157821663|ref|NP_001102397.1| oxysterol-binding protein 1 [Rattus norvegicus] gi|149062479|gb|EDM12902.1| oxysterol binding protein (predicted) [Rattus norvegicus]

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 65  SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 124

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 125 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 184

Query: 128 QMA----------RCSTGPPVHDSGPRLGGLP-----REEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P +  G    G       + + +++++++ F+DA E++T  
Sbjct: 185 QLAKQHNHLERAFRGATVLPANTPGSTGSGKEQCCSGKGDMSDEDDENEFFDAPEIITMP 244

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 245 ENLGHKRTGSNI 256

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149638687|ref|XP_001505999.1| PREDICTED: oxysterol-binding protein 1-like [Ornithorhynchus anatinus]

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 90/124 (72%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 121 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 180

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQHERDQR++LEE LE
Sbjct: 181 ESNEKIKQVNERATLFRITSNAMINACRDFLVLAQTHSKKWQKALQHERDQRIRLEETLE 240

Query: 128 QMAR 131
           Q+A+
Sbjct: 241 QLAK 244

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395858115|ref|XP_003801419.1| PREDICTED: oxysterol-binding protein 1 [Otolemur garnettii]

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 190 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 249

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 250 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 309

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P +  G    G       + + +++++++ F+DA E++T  
Sbjct: 310 QLAKQHNHLERAFRGATVLPANTPGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 369

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 370 ENLGHKRTGSNI 381

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301788572|ref|XP_002929706.1| PREDICTED: oxysterol-binding protein 1-like [Ailuropoda melanoleuca]

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 17/192 (8%)

Query: 8   SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
           SD   DEE      + +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P 
Sbjct: 143 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLRLPA 202

Query: 68  ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
           E   +IK++NERATLFRIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LE
Sbjct: 203 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 262

Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
           Q+A          R +T  P +  G    G       + + +++++++ F+DA E++T  
Sbjct: 263 QLAKQHNHLERAFRGATVLPANTPGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 322

Query: 171 ENGGLDPAGRGL 182
           EN G    G  +
Sbjct: 323 ENLGHKRTGSNI 334

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
UNIPROTKB|P16258	809	OSBP "Oxysterol-binding protei	0.552	0.181	0.456	1e-27
RGD|1308069	805	Osbp "oxysterol binding protei	0.406	0.134	0.574	1.3e-27
UNIPROTKB|P22059	807	OSBP "Oxysterol-binding protei	0.406	0.133	0.574	1.3e-27
UNIPROTKB|F1RMJ9	809	OSBP "Oxysterol-binding protei	0.406	0.133	0.574	1.7e-27
UNIPROTKB|E1BPW1	692	OSBP "Oxysterol-binding protei	0.406	0.156	0.564	2.4e-27
MGI|MGI:97447	805	Osbp "oxysterol binding protei	0.406	0.134	0.564	4.5e-27
UNIPROTKB|F1Q4F1	815	OSBP "Oxysterol-binding protei	0.406	0.132	0.564	4.6e-27
UNIPROTKB|F1NRB3	756	OSBP2 "Oxysterol-binding prote	0.406	0.142	0.564	8.2e-27
UNIPROTKB|F1PJ53	920	OSBP2 "Oxysterol-binding prote	0.402	0.116	0.568	3.3e-26
ZFIN|ZDB-GENE-060526-3	808	si:ch211-106a19.1 "si:ch211-10	0.406	0.133	0.546	8.8e-26

UNIPROTKB|P16258 OSBP "Oxysterol-binding protein 1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 320 (117.7 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 74/162 (45%), Positives = 101/162 (62%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P E   +IK++NERATLF
Sbjct:   208 ELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPAESNEKIKQVNERATLF 267

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMA----------RCS 133
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A          R +
Sbjct:   268 RITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLEQLAKQHNHLERAFRGA 327

Query:   134 TGPPVHDSGPRLGGLP-----RXXXXXXXXXSVFYDANEVMT 170
             T  P H SG    G       +         + F+DA E++T
Sbjct:   328 TVLPAHTSGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIIT 369

GO:0015485 "cholesterol binding" evidence=IDA

RGD|1308069 Osbp "oxysterol binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 319 (117.4 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 62/108 (57%), Positives = 84/108 (77%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P E   +IK++NERATLF
Sbjct:   204 ELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPAESNEKIKQVNERATLF 263

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A+
Sbjct:   264 RITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLEQLAK 311

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|P22059 OSBP "Oxysterol-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 62/108 (57%), Positives = 84/108 (77%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P E   +IK++NERATLF
Sbjct:   206 ELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPAESNEKIKQVNERATLF 265

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A+
Sbjct:   266 RITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLEQLAK 313

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008142 "oxysterol binding" evidence=TAS

UNIPROTKB|F1RMJ9 OSBP "Oxysterol-binding protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 62/108 (57%), Positives = 84/108 (77%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L+N ++TLS  +E L + N++I KHG AL R+LSELES   P E   +IK++NERATLF
Sbjct:   208 ELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLRLPAESNEKIKQVNERATLF 267

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A+
Sbjct:   268 RITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLEQLAK 315

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E1BPW1 OSBP "Oxysterol-binding protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 2.4e-27, P = 2.4e-27
 Identities = 61/108 (56%), Positives = 84/108 (77%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L+N ++TLS  +E L + N++I KHG AL R+LSELE+   P E   +IK++NERATLF
Sbjct:    86 ELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELEALRLPAESSEKIKQVNERATLF 145

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A+
Sbjct:   146 RITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLEQLAK 193

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

MGI|MGI:97447 Osbp "oxysterol binding protein" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 61/108 (56%), Positives = 84/108 (77%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L++ ++TLS  +E L + N++I KHG AL R+LSELES   P E   +IK++NERATLF
Sbjct:   204 ELQSTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPAESNEKIKQVNERATLF 263

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A+
Sbjct:   264 RITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLEQLAK 311

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1Q4F1 OSBP "Oxysterol-binding protein" [Canis lupus familiaris (taxid:9615)]

 Score = 314 (115.6 bits), Expect = 4.6e-27, P = 4.6e-27
 Identities = 61/108 (56%), Positives = 84/108 (77%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L+N ++TLS  +E L + N++I KHG AL R+LSELE+   P E   +IK++NERATLF
Sbjct:   213 ELQNTLRTLSSKVEDLTTCNDLIAKHGTALQRSLSELEALRLPAESNEKIKQVNERATLF 272

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L +AQT   KWQ+ LQ+ERDQR++LEE LEQ+A+
Sbjct:   273 RITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLEQLAK 320

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1NRB3 OSBP2 "Oxysterol-binding protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 8.2e-27, P = 8.2e-27
 Identities = 61/108 (56%), Positives = 83/108 (76%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +L   +KTLS  LE L + N++I KHGAAL R+LSELE+   P E   +IK +NERATLF
Sbjct:   152 ELHGTLKTLSSKLEDLSTCNDLIAKHGAALQRSLSELENLKLPAESGEKIKAVNERATLF 211

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +L++A+T   KWQR LQ+ER+QR++LEE +EQ+A+
Sbjct:   212 RITSNAMINACRDFLDLAETHSRKWQRALQYEREQRIRLEETIEQLAK 259

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|F1PJ53 OSBP2 "Oxysterol-binding protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 3.3e-26, P = 3.3e-26
 Identities = 62/109 (56%), Positives = 83/109 (76%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQ-IKEINERATL 82
             +L   IK+LSV L+ L + N++I KHGAAL R+LSEL+    P E  C+ +K +NERATL
Sbjct:   309 ELHYTIKSLSVKLDDLSTCNDLIAKHGAALQRSLSELDGLKIPYE-SCEKLKVVNERATL 367

Query:    83 FRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             FRIT+NAMIN+C  +LE+A+T   KWQR LQ+ERDQR+ LEE +EQ+A+
Sbjct:   368 FRITSNAMINACRDFLELAETHSRKWQRALQYERDQRIHLEETIEQLAK 416

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-060526-3 si:ch211-106a19.1 "si:ch211-106a19.1" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 8.8e-26, P = 8.8e-26
 Identities = 59/108 (54%), Positives = 83/108 (76%)

Query:    24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLF 83
             +++  +KTL+  L+ L + NE+I KHGAAL R+LSELE+   P E   +IK +NERATLF
Sbjct:   188 EIQGTLKTLASKLDDLSTCNELIAKHGAALQRSLSELETLRVPLEGGEKIKAVNERATLF 247

Query:    84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
             RIT+NAMIN+C  +LE+A++   +WQR+LQHER+QR  LEE +EQ+A+
Sbjct:   248 RITSNAMINACRDFLELAESHSRRWQRVLQHEREQRTHLEETIEQLAK 295

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG1739|consensus	611		99.44
KOG1737|consensus	799		99.34
PF04108	412	APG17: Autophagy protein Apg17 ; InterPro: IPR0072	89.21
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.79
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	85.45
PF11214	105	Med2: Mediator complex subunit 2; InterPro: IPR021	84.29
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.7

>KOG1739|consensus

Probab=99.44  E-value=2.5e-14  Score=140.96  Aligned_cols=137  Identities=17%  Similarity=0.275  Sum_probs=111.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhHHHHHHHHH----------------hhhhcCCCchhh--------------------hh
Q psy3495          29 IKTLSVNLEQLQSYNEIINKHGAALLRTLS----------------ELESCDNPQELQ--------------------CQ   72 (266)
Q Consensus        29 lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~----------------ELEs~~~p~e~~--------------------~k   72 (266)
                      .-.|++||.+++|++|++.+|...|||+++                +|-....|....                    .+
T Consensus       154 npSlrekLAeneq~sD~~esqkl~lqK~~da~AyrtmckdQmtsIerllEqggpsciv~~atilSvkathlal~~~~~~~  233 (611)
T KOG1739|consen  154 NPSLREKLAENETFSDILESQKLTLQKYFDACAYRTMCKDQMTSIERLLEQGGPSCIVDGATILSVKATHLALFPHVTPK  233 (611)
T ss_pred             CccHHHHHhhcccccchhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHhcCCCccccCCceeeeecccceeeecccccc
Confidence            347999999999999999999999999998                111111122211                    33


Q ss_pred             hhhh--hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCC
Q psy3495          73 IKEI--NERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPR  150 (266)
Q Consensus        73 ik~V--~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~~p~~~g~~~~~~~~e  150 (266)
                      +..|  ++.+|+||.||++++.+..||++++...+..|+++|..|.+++.+-++...-+....-..+..+|++    +.+
T Consensus       234 ~~~id~k~evIt~~attsg~l~t~~h~ie~~~ks~~s~~~rLe~~~ek~r~sed~sk~~~~e~~kr~~~g~~d----~~e  309 (611)
T KOG1739|consen  234 INGIDFKGEVITFKATTSGILATLSHCIELMVKSEDSWQKRLEKETEKKRRSEDASKNAMTELKKRSHFGGPD----YEE  309 (611)
T ss_pred             eeeeccccceeecccccccccccchhchhheeecchHhHhHHHHHHHHHHhhhhhcccchhhhhhcccCCCCc----ccc
Confidence            4455  7899999999999999999999999999999999999999999999988766655555667777754    479


Q ss_pred             CCCCcccCcccccccccccc
Q psy3495         151 EEEAEDEEDSVFYDANEVMT  170 (266)
Q Consensus       151 gp~SdedDD~EFFDAvE~~~  170 (266)
                      ||+|.+++| |||||+|+++
T Consensus       310 ~~~sll~~d-e~~dAvet~l  328 (611)
T KOG1739|consen  310 GPNSLINED-EFFDAVETAL  328 (611)
T ss_pred             Cccccchhh-hhccchhhhH
Confidence            999999998 9999999875

>KOG1737|consensus

Probab=99.34  E-value=1.5e-12  Score=133.78  Aligned_cols=140  Identities=21%  Similarity=0.204  Sum_probs=119.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHhHHHHHHHHH-hhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhh
Q psy3495          30 KTLSVNLEQLQSYNEIINKHGAALLRTLS-ELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKW  108 (266)
Q Consensus        30 R~LseKL~DL~Tc~DLI~KhG~aLQRsL~-ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kW  108 (266)
                      ++...+|.+|.+|.+++.+++..++|.|. +++....+.....+++...+|+.+|++++.+|++|+.+|..++.++..+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~s~s~~k~~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~  281 (799)
T KOG1737|consen  202 ETREINVDVLRLLSSLPNLTGQLLLRELNALLEDKKEQSSSKSKLQERTERIALKVLTSLASVFAECDDEAELLSQSRIE  281 (799)
T ss_pred             cchhhhhhhhhhccccccchhhhhhhhhccccccccccccchhhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhh
Confidence            88999999999999999999999999997 77777777778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCC--------------CCC-CCCCCCCCCCCCCCcccCcccccccccccc
Q psy3495         109 QRMLQHERDQRLKLEELLEQMARCSTGPP--------------VHD-SGPRLGGLPREEEAEDEEDSVFYDANEVMT  170 (266)
Q Consensus       109 qK~Lq~ErEQR~rLEE~lEqLAKQh~~~p--------------~~~-g~~~~~~~~egp~SdedDD~EFFDAvE~~~  170 (266)
                      |+.+.++.+||++|++.++||++|+....              ... ... ....+++..+..+|++|||||.+...
T Consensus       282 s~~s~~~~~q~~~l~~~l~~le~q~~~le~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~e~~da~s~~s  357 (799)
T KOG1737|consen  282 SDASHSESEQRIRLQEALSALENQNTDLEVALRRAHAAQAALDLSKVTRL-SLLHEEESFSESDELTEQFDAESSLS  357 (799)
T ss_pred             hhhhcchhhhhhhhhhHHHHHHhhhhhHHHHHhHhhhhhhccCccccccc-cccccccccccccccccccccccccc
Confidence            99999999999999999999999975210              000 001 12224677778888899999999753

>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.21  E-value=7.6  Score=37.84  Aligned_cols=116  Identities=14%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             ccCcHHHHHHHHHHHHHhhhhHHHHHHH----HHHhHHHHHHHHH-------hhhhcCC-CchhhhhhhhhhhhhhHHHH
Q psy3495          18 EVDGEVKLENIIKTLSVNLEQLQSYNEI----INKHGAALLRTLS-------ELESCDN-PQELQCQIKEINERATLFRI   85 (266)
Q Consensus        18 ~~~~~~el~~~lR~LseKL~DL~Tc~DL----I~KhG~aLQRsL~-------ELEs~~~-p~e~~~kik~V~ERATLFKI   85 (266)
                      -..|..|+..+++.|.+.+.++.....-    |..|.+.+....+       .|..... -......++.+..+...|+.
T Consensus       246 l~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~  325 (412)
T PF04108_consen  246 LENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKE  325 (412)
T ss_pred             HHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888888888888888886665444    5555554444433       3333111 01122344555778888888


Q ss_pred             hHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495          86 TTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST  134 (266)
Q Consensus        86 TS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~  134 (266)
                      +..+-+....++..+-.+-...... |-.|..||+.-++.++.+.++.+
T Consensus       326 ~i~~~~~~l~~L~~~Y~~F~~aY~~-LL~Ev~RRr~~~~k~~~i~~~~~  373 (412)
T PF04108_consen  326 SIQAYIDELEQLCEFYEGFLSAYDS-LLLEVERRRAVRDKMKKIIREAN  373 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877777777666677777 77799999988887777666664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.79  E-value=3.7  Score=43.19  Aligned_cols=111  Identities=17%  Similarity=0.236  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHh-hhhHHHHHHHHHHhHHHHHHHHH----hhhhcCC-CchhhhhhhhhhhhhhHHHHhHHHHHHHHHHH
Q psy3495          24 KLENIIKTLSVN-LEQLQSYNEIINKHGAALLRTLS----ELESCDN-PQELQCQIKEINERATLFRITTNAMINSCGKY   97 (266)
Q Consensus        24 el~~~lR~LseK-L~DL~Tc~DLI~KhG~aLQRsL~----ELEs~~~-p~e~~~kik~V~ERATLFKITS~AMInAc~ef   97 (266)
                      -|..+.+.|++. +..+...++-|.+|+..|++-..    +|..+.. -..+..+-..+.||.---+-....+.+-|...
T Consensus       540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v  619 (717)
T PF10168_consen  540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV  619 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577888888 78899999999999998887666    3332110 00011111122223222223344444445555


Q ss_pred             HHHHH-------hchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495          98 LEIAQ-------TQGGKWQRMLQHERDQRLKLEELLEQMARCST  134 (266)
Q Consensus        98 L~La~-------q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~  134 (266)
                      +.++.       .-+++|.+-|+.=.++=..|...++++.++++
T Consensus       620 l~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~  663 (717)
T PF10168_consen  620 LQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD  663 (717)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443       34789999999888888888888888887776

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=85.45  E-value=9.6  Score=30.02  Aligned_cols=106  Identities=21%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchh-------------------hhhhhhhhhhhhHHH
Q psy3495          24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQEL-------------------QCQIKEINERATLFR   84 (266)
Q Consensus        24 el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~-------------------~~kik~V~ERATLFK   84 (266)
                      ++....+.|..++..|++-..-+..+...++.+.+.|+........                   .+++-.-=|.-....
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve   82 (129)
T cd00890           3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence            4566778899999999999999999999999999988774321110                   111111112223344


Q ss_pred             HhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495          85 ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQM  129 (266)
Q Consensus        85 ITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqL  129 (266)
                      .+..-.+.-+..=++.++.+-++|.+.+..=..+-..++..+.++
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455556778888888888888888888887777777777766665

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=84.29  E-value=19  Score=30.09  Aligned_cols=89  Identities=18%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             HHHHhhhhHHHHHHHHHHhHHHH-HHHHHh--hhhcCCCchhhhhhhhhhhhhhHHHHh---HHHHHHHHHHHHHHHHhc
Q psy3495          31 TLSVNLEQLQSYNEIINKHGAAL-LRTLSE--LESCDNPQELQCQIKEINERATLFRIT---TNAMINSCGKYLEIAQTQ  104 (266)
Q Consensus        31 ~LseKL~DL~Tc~DLI~KhG~aL-QRsL~E--LEs~~~p~e~~~kik~V~ERATLFKIT---S~AMInAc~efL~La~q~  104 (266)
                      +++.||.  +.|.|||.--|.-+ |--|..  +.+....+-...-.+.+++++..|-.-   +--.+|....||+-+..-
T Consensus         4 ~~~nkLt--~~fdDILk~s~~m~~qeqik~~ql~s~vi~G~n~~l~k~L~eki~~Fh~ILDd~~~~l~~sk~~v~~m~e~   81 (105)
T PF11214_consen    4 NLQNKLT--QCFDDILKVSGEMFVQEQIKNNQLQSNVITGFNNQLQKQLSEKIHKFHSILDDTESKLNDSKWYVDTMVEL   81 (105)
T ss_pred             hHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556655  45566655444433 244442  233223333334467788888888642   334566777787766543


Q ss_pred             hhhh-HHHHHHHHHHHHH
Q psy3495         105 GGKW-QRMLQHERDQRLK  121 (266)
Q Consensus       105 e~kW-qK~Lq~ErEQR~r  121 (266)
                      ..+- ..++..|.|+|++
T Consensus        82 ~q~~ee~K~keE~E~~rk   99 (105)
T PF11214_consen   82 KQKQEEEKIKEEEERKRK   99 (105)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            3331 1136666666666

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.70  E-value=29  Score=31.22  Aligned_cols=70  Identities=24%  Similarity=0.345  Sum_probs=49.2

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH
Q psy3495          21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLE   99 (266)
Q Consensus        21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~   99 (266)
                      .+.++..-++.|...++.|+.+++-+.+..++++.-+++|+.      -.+.+..++.+...+   -.-|++.+..||.
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~------qi~~~~~~~~~l~p~---m~~m~~~L~~~v~  119 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ------QIEQIEETRQELVPL---MEQMIDELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence            344556677888888888999999988888888888888865      112223333444444   3458888898888

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2rr3_B	47	OSBP, oxysterol-binding protein 1; lipid transport	97.59
4hpq_C	413	ATG17, KLTH0D15642P; autophagy, protein transport;	91.28
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	90.66
3l4f_A	61	RHO guanine nucleotide exchange factor 7; coiled-c	84.73

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}

Probab=97.59  E-value=3.3e-05  Score=54.37  Aligned_cols=24  Identities=17%  Similarity=0.558  Sum_probs=20.3

Q ss_pred             CCCCCCCCCcccCccccccccccc
Q psy3495         146 GGLPREEEAEDEEDSVFYDANEVM  169 (266)
Q Consensus       146 ~~~~egp~SdedDD~EFFDAvE~~  169 (266)
                      ....+|+.|++|||+|||||+|.-
T Consensus         5 ~~~~KGe~SdEDed~EfFDA~efI   28 (47)
T 2rr3_B            5 DHWGKGDMSDEDDENEFFDAPEII   28 (47)
T ss_dssp             SSCCCCCSCCCCCSSCCBCCCSSC
T ss_pred             ccccccccccccccccccccccee
Confidence            345699999999999999998854

>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}

Probab=91.28  E-value=4  Score=39.11  Aligned_cols=116  Identities=17%  Similarity=0.162  Sum_probs=72.5

Q ss_pred             ccCcHHHHHHHHHHHHHhhhhHHHHHHHHHHh-------HHHHHHHHHhhhh-cCCCchhhhhhhhhhhhhhHHHHhHHH
Q psy3495          18 EVDGEVKLENIIKTLSVNLEQLQSYNEIINKH-------GAALLRTLSELES-CDNPQELQCQIKEINERATLFRITTNA   89 (266)
Q Consensus        18 ~~~~~~el~~~lR~LseKL~DL~Tc~DLI~Kh-------G~aLQRsL~ELEs-~~~p~e~~~kik~V~ERATLFKITS~A   89 (266)
                      -..|..++-.+++.|.+.+.++.....-+.+.       .+.|+..+..+-. ...-.+...-++.|.++...||-+...
T Consensus       240 v~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~~fk~~~~~  319 (413)
T 4hpq_C          240 VERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLE  319 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777777766655553322222       2222222222211 000011123345567777789988888


Q ss_pred             HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495          90 MINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST  134 (266)
Q Consensus        90 MInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~  134 (266)
                      -+....+.-++-.+-...... |-.|..||+.-++.++..+++.+
T Consensus       320 ~~~~~~~L~~~Y~~f~~aY~~-lL~Ev~RRr~~~~~~~~i~~~~~  363 (413)
T 4hpq_C          320 DIRQTRNLLDFYANFERSYHN-LLKEVKRRKETAAKLSQILKSCE  363 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877777777888887 77899999998888888877665

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=90.66  E-value=0.88  Score=33.15  Aligned_cols=45  Identities=16%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495          90 MINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST  134 (266)
Q Consensus        90 MInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~  134 (266)
                      .+-|+.+=|.-.++..++.+|.|..|+.-|++||..+..+-++++
T Consensus        11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~~   55 (56)
T 2w6b_A           11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN   55 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            455888999999999999999999999999999999999988875

>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=84.73  E-value=1.9  Score=31.86  Aligned_cols=45  Identities=16%  Similarity=0.262  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy3495          91 INSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTG  135 (266)
Q Consensus        91 InAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~  135 (266)
                      +=++.+=+.-.++..++-++.+.+|...|++||..+..+.+|.|.
T Consensus         9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~   53 (61)
T 3l4f_A            9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            446677777788888999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	91.12

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=1.1  Score=31.51  Aligned_cols=46  Identities=20%  Similarity=0.241  Sum_probs=38.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495          84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQM  129 (266)
Q Consensus        84 KITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqL  129 (266)
                      |++-+++|....+|+...+.+...+.......+.+...|...+.+|
T Consensus        40 k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L   85 (88)
T d1nkpa_          40 KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL   85 (88)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678889999999999999999998887777777777777777766