Psyllid ID: psy3496

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI
cHHHHHHcccEEcccccccEEEEccEEEEEEEEcccccccccccEEEEcccEEEEEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHccccccEEEEEcHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
cHHHHHHcccccccccccEEEEcccccHHHHHHHHHccccccccEEEEcccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHccccEcccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEc
VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRhtglkripdvvvwpgtfGVITKVVLkirplpkcrkygsivfpnfeAGVHCLREIAKqrcqpssirlmdnaqfkfgqslrpvpgyfGLLLDGLKRMYITKIKGFSVDEMCVTTLLFegkrvgpvgyiTKIKGFSVDEMCVTTLlfegdpedvkKNQAKIYSIALKfggipagetngmrgYMLTFVIAYI
VLSLLEATNVslstqgedrliRAHGQTLYEVFSLRHTGlkripdvvvwpgtFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFkfgqslrpvPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLlfegkrvgpvgYITKIKGFSVDEMCVTTLLFegdpedvkKNQAKIYSIALKfggipagetngmRGYMLTFVIAYI
VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI
******************RLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAY*
VLSLLE*TNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI
VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI
VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
O00116 658 Alkyldihydroxyacetonephos yes N/A 0.650 0.220 0.525 3e-45
Q8C0I1 645 Alkyldihydroxyacetonephos yes N/A 0.650 0.224 0.525 5e-45
P97275 658 Alkyldihydroxyacetonephos yes N/A 0.650 0.220 0.52 8e-45
Q9EQR2 644 Alkyldihydroxyacetonephos yes N/A 0.650 0.225 0.514 3e-44
Q9V778 631 Alkyldihydroxyacetonephos yes N/A 0.650 0.229 0.488 2e-43
O45218 597 Alkyldihydroxyacetonephos yes N/A 0.650 0.242 0.4 2e-33
O96759 611 Alkyldihydroxyacetonephos yes N/A 0.470 0.171 0.266 1e-09
O97157 613 Alkyldihydroxyacetonephos N/A N/A 0.475 0.172 0.245 1e-07
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1 Back     alignment and function desciption
 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 114/175 (65%), Gaps = 30/175 (17%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
           GT GVIT+  +KIRP+P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNKQFQF 428

Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
           G +L+P V   F   LDGLK+ YITK KGF  +++ V TLLFEG R              
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474

Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
                          E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAYI
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYI 514

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1 Back     alignment and function description
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1 Back     alignment and function description
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1 Back     alignment and function description
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1 Back     alignment and function description
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1 Back     alignment and function description
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum GN=eapA PE=1 SV=1 Back     alignment and function description
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei brucei PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
270012218 600 hypothetical protein TcasGA2_TC006332 [T 0.650 0.241 0.597 9e-54
307206571 407 Alkyldihydroxyacetonephosphate synthase 0.793 0.434 0.504 2e-48
242010624 565 predicted protein [Pediculus humanus cor 0.650 0.256 0.568 2e-48
332024393 526 Alkyldihydroxyacetonephosphate synthase 0.654 0.277 0.568 8e-48
350421779 610 PREDICTED: alkyldihydroxyacetonephosphat 0.654 0.239 0.557 4e-47
345486229 605 PREDICTED: alkyldihydroxyacetonephosphat 0.654 0.241 0.540 7e-47
332374582 600 unknown [Dendroctonus ponderosae] 0.650 0.241 0.557 8e-47
410896920 628 PREDICTED: alkyldihydroxyacetonephosphat 0.650 0.230 0.542 3e-46
193702197 607 PREDICTED: alkyldihydroxyacetonephosphat 0.650 0.238 0.540 6e-46
187607398 626 alkyldihydroxyacetonephosphate synthase, 0.650 0.231 0.537 7e-46
>gi|270012218|gb|EFA08666.1| hypothetical protein TcasGA2_TC006332 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 125/174 (71%), Gaps = 29/174 (16%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
           G+ GVIT+VV+K+RPLPKC ++GSIVFP+FEAG+ C+RE+A+QRCQPSSIRLMDN QFKF
Sbjct: 309 GSLGVITEVVIKVRPLPKCHRFGSIVFPDFEAGLACMREVARQRCQPSSIRLMDNGQFKF 368

Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSV 169
           G  L+P   Y GL+LDGLK+ Y+TKIKGF+VD MCV TLLFEG+                
Sbjct: 369 GMILKPESSYLGLILDGLKKFYVTKIKGFNVDTMCVMTLLFEGEEA-------------- 414

Query: 170 DEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
                          DVK  + KIYSI L+FGG+PAG+TNG RGYMLTFVIAYI
Sbjct: 415 ---------------DVKAQEKKIYSIGLQFGGMPAGQTNGERGYMLTFVIAYI 453

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307206571|gb|EFN84573.1| Alkyldihydroxyacetonephosphate synthase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242010624|ref|XP_002426062.1| predicted protein [Pediculus humanus corporis] gi|212510084|gb|EEB13324.1| predicted protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332024393|gb|EGI64591.1| Alkyldihydroxyacetonephosphate synthase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350421779|ref|XP_003492954.1| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|345486229|ref|XP_001599952.2| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332374582|gb|AEE62432.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|410896920|ref|XP_003961947.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Takifugu rubripes] gi|94482855|gb|ABF22470.1| alkyldihydroxyacetone phosphate synthase [Takifugu rubripes] Back     alignment and taxonomy information
>gi|193702197|ref|XP_001942947.1| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|187607398|ref|NP_001120301.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus (Silurana) tropicalis] gi|169641958|gb|AAI60639.1| LOC100145360 protein [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
UNIPROTKB|F1P5J7 638 AGPS "Uncharacterized protein" 0.470 0.164 0.650 5.6e-46
ZFIN|ZDB-GENE-031118-14 629 agps "alkylglycerone phosphate 0.470 0.166 0.632 2.5e-44
UNIPROTKB|O00116 658 AGPS "Alkyldihydroxyacetonepho 0.470 0.159 0.641 2.6e-44
UNIPROTKB|P97275 658 AGPS "Alkyldihydroxyacetonepho 0.470 0.159 0.641 4.3e-44
UNIPROTKB|J9NZ69 699 AGPS "Uncharacterized protein" 0.470 0.150 0.641 1.3e-43
MGI|MGI:2443065 645 Agps "alkylglycerone phosphate 0.470 0.162 0.641 2.6e-43
UNIPROTKB|I3LM15646 AGPS "Uncharacterized protein" 0.470 0.162 0.641 3.1e-43
UNIPROTKB|E1BPV2 576 AGPS "Uncharacterized protein" 0.470 0.182 0.641 3.6e-43
RGD|620364 644 Agps "alkylglycerone phosphate 0.470 0.163 0.632 9.1e-43
UNIPROTKB|E2QVV9 653 AGPS "Uncharacterized protein" 0.470 0.160 0.641 1.8e-42
UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 367 (134.2 bits), Expect = 5.6e-46, Sum P(2) = 5.6e-46
 Identities = 69/106 (65%), Positives = 84/106 (79%)

Query:    50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
             G  GV+T+V +KIRPLP+ +KYGS+VFPNFE GV CLRE+AKQRC P+SIRL+DNAQF+F
Sbjct:   349 GILGVVTEVTIKIRPLPEYQKYGSVVFPNFERGVACLREVAKQRCAPASIRLVDNAQFQF 408

Query:   110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKR 154
             G +L+P V   F   LDGLK+ YITK KGF  + +CV TLLFEG R
Sbjct:   409 GHALKPQVASIFTSFLDGLKKFYITKFKGFDPNVLCVATLLFEGDR 454
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0005778 "peroxisomal membrane" evidence=IEA
GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA
GO:0008610 "lipid biosynthetic process" evidence=IEA
ZFIN|ZDB-GENE-031118-14 agps "alkylglycerone phosphate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620364 Agps "alkylglycerone phosphate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9EQR2ADAS_RAT2, ., 5, ., 1, ., 2, 60.51420.65020.2251yesN/A
O00116ADAS_HUMAN2, ., 5, ., 1, ., 2, 60.52570.65020.2203yesN/A
P97275ADAS_CAVPO2, ., 5, ., 1, ., 2, 60.520.65020.2203yesN/A
Q8C0I1ADAS_MOUSE2, ., 5, ., 1, ., 2, 60.52570.65020.2248yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
pfam02913247 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t 8e-09
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 2e-04
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 6e-04
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain Back     alignment and domain information 
 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 65  LPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVP 117
           LP+      + FP+FEA    +R + +    P+++ LMD A          + 
Sbjct: 1   LPEAVAVAVVGFPSFEAAAAAVRALRQSGIGPAALELMDKAALDLVLGTLGLG 53

This domain has a ferredoxin-like fold. Length = 247
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
KOG1233|consensus 613 99.96
TIGR00387 413 glcD glycolate oxidase, subunit GlcD. This protein 99.67
PRK11230 499 glycolate oxidase subunit GlcD; Provisional 99.62
PLN02805 555 D-lactate dehydrogenase [cytochrome] 99.61
KOG1232|consensus511 99.39
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 98.82
PRK11183 564 D-lactate dehydrogenase; Provisional 98.75
PF02913 248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 98.72
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 98.67
KOG1231|consensus 505 98.26
PLN02441 525 cytokinin dehydrogenase 97.89
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 95.3
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 95.11
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 95.0
TIGR01678 438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 94.59
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 90.55
>KOG1233|consensus Back     alignment and domain information 
Probab=99.96  E-value=4.6e-30  Score=239.08  Aligned_cols=193  Identities=56%  Similarity=1.033  Sum_probs=177.6

Q ss_pred             hhhhhhcCceeChhhHHHHHHHhhhhHHHHHhchhhccCcCCceeeec--------------------------------
Q psy3496           2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWP--------------------------------   49 (223)
Q Consensus         2 ~~~~~~~~~~~~~~g~~r~~r~~~~~~~~l~~lR~~~~~~l~~L~~g~--------------------------------   49 (223)
                      |..|..||+|.|.++.+|+.|-|+++++++.-||+.-...+||+++|+                                
T Consensus       120 lh~Lket~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~a  199 (613)
T KOG1233|consen  120 LHFLKETKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNA  199 (613)
T ss_pred             HHHHHhccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCccccccc
Confidence            456789999999999999999999999999999999779999999997                                


Q ss_pred             --------------------------------------------------------------------------------
Q psy3496          50 --------------------------------------------------------------------------------   49 (223)
Q Consensus        50 --------------------------------------------------------------------------------   49 (223)
                                                                                                      
T Consensus       200 l~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN  279 (613)
T KOG1233|consen  200 LDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKN  279 (613)
T ss_pred             ccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeecccccccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHH
Q psy3496          50 --------------------------------------------GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHC   85 (223)
Q Consensus        50 --------------------------------------------GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~a   85 (223)
                                                                  ||||||||+|+|+.|+|+.+++-.+.||++++....
T Consensus       280 ~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f  359 (613)
T KOG1233|consen  280 KYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNF  359 (613)
T ss_pred             ccCChhHheEEEEeecCcchhhhhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHH
Confidence                                                        999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCceEEEeechhhHHHhhhcCCC-CCccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeec
Q psy3496          86 LREIAKQRCQPSSIRLMDNAQFKFGQSLRPV-PGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKI  164 (223)
Q Consensus        86 v~~i~~sgl~PsalElmD~~~l~~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      ++++......|+++++||......-+.+++. .+|.+.+.+.++++|+++++||+.++                      
T Consensus       360 ~REvA~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nq----------------------  417 (613)
T KOG1233|consen  360 FREVAIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQ----------------------  417 (613)
T ss_pred             HHHHHHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhh----------------------
Confidence            9999988899999999999988777776665 48888888888888766655555554                      


Q ss_pred             cccccccceeEEEEEEcCHHHHHHHHHHHHHHHHHcCCccCCCcccccceeeeeEEecC
Q psy3496         165 KGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI  223 (223)
Q Consensus       165 ~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i~~~~G~~~~g~~~~~~~~~~~~~~~y~  223 (223)
                             .|.++|+|||+.++|.++.+++++||++|++.++|+++|+++|.++|+|+||
T Consensus       418 -------icaATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYi  469 (613)
T KOG1233|consen  418 -------ICAATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYI  469 (613)
T ss_pred             -------hhhhhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHH
Confidence                   8889999999999999999999999999999999999999999999999997

>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>KOG1232|consensus Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231|consensus Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
4bby_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 7e-46
4bca_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 7e-46
4bc7_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 2e-45
2uuu_A 584 Alkyldihydroxyacetonephosphate Synthase In P212121 1e-10
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 113/175 (64%), Gaps = 30/175 (17%)
Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
           GT GVIT+  +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQF 428
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
           G +L+P V   F   LDGLK+ YITK KGF  +++ V TLLFEG R              
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
                          E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYM 514
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 4e-39
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 3e-07
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-10
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-07
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 4e-07
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
 Score =  141 bits (356), Expect = 4e-39
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 29/174 (16%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
           GT G+IT+ V+K+  +P+  +Y   +FP F   V  L++I      P+ IR+ D  + + 
Sbjct: 299 GTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQL 358

Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSV 169
             + +P  G        + + Y+  I+ F    +C    +                    
Sbjct: 359 SFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVC--LSIIG------------------ 398

Query: 170 DEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
                    FEG  + V  ++  ++ I  K      G   G       + + YI
Sbjct: 399 ---------FEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYI 443
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
4bby_A 658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.81
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 99.74
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 99.54
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.47
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.32
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.29
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.1
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 98.55
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 97.81
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 97.59
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 96.79
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 95.83
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 95.77
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 95.73
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 95.07
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 94.95
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 94.75
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 93.68
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 90.84
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 89.81
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 89.61
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 88.32
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 84.14
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 80.97
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
Probab=99.81  E-value=2.8e-20  Score=181.50  Aligned_cols=154  Identities=58%  Similarity=1.019  Sum_probs=123.8

Q ss_pred             CcCCceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCceEEEeechhhHHHhhhcCCCC-
Q psy3496          40 KRIPDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVP-  117 (223)
Q Consensus        40 ~~l~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~sgl~PsalElmD~~~l~~v~~~~~~~-  117 (223)
                      +||.+|++|| ||||||||++|||+|+|+.+.++++.|+|+++|+++++++.++++.|+++|+||...++......+.. 
T Consensus       358 yDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~~psa~El~D~~~~~~~~~~~~~~~  437 (658)
T 4bby_A          358 PDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVS  437 (658)
T ss_dssp             SCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHHHHTSSCCC
T ss_pred             cCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCCCccccccccHHHHHHHHhhccccc
Confidence            7999999999 99999999999999999999999999999999999999999999999999999999998876533221 


Q ss_pred             CccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHHH
Q psy3496         118 GYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIA  197 (223)
Q Consensus       118 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i~  197 (223)
                      .......++.                             ..-+++...|+..+..+..++.|||+.+.+..+.+.+.+++
T Consensus       438 ~~~~~~~~~~-----------------------------~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~  488 (658)
T 4bby_A          438 SIFTSFLDGL-----------------------------KKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIA  488 (658)
T ss_dssp             CTTCC-------------------------------------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccccccccch-----------------------------hhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            1111111111                             11245566677777788888899999999999999999999


Q ss_pred             HHcCCccCCCcccccceeeeeEEec
Q psy3496         198 LKFGGIPAGETNGMRGYMLTFVIAY  222 (223)
Q Consensus       198 ~~~G~~~~g~~~~~~~~~~~~~~~y  222 (223)
                      .++|+...++.++++|+..+|..+|
T Consensus       489 ~~~g~~~~~~~~~~~~~~~~~~~~~  513 (658)
T 4bby_A          489 AKFGGLAAGEDNGQRGYLLTYVIAY  513 (658)
T ss_dssp             HTTTCEECCHHHHHHHHHHHHHHHH
T ss_pred             HhhCcchhhhhHHHHHHHHhhHHHH
Confidence            9999999999999999999887765
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d1wvfa1 279 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cr 8e-08
d1e8ga1287 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fu 9e-07
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 0.001
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 0.001
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 279 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 49.3 bits (117), Expect = 8e-08
 Identities = 16/137 (11%), Positives = 29/137 (21%), Gaps = 34/137 (24%)

Query: 70  KYGSIVFPN---FEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDG 126
           K   ++F +       V  LR +      P+S+ +           L             
Sbjct: 4   KPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQ--------- 54

Query: 127 LKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDV 186
                                         P   I +++  +            G  E V
Sbjct: 55  ----------------------YTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQV 92

Query: 187 KKNQAKIYSIALKFGGI 203
             N   +  +  K G  
Sbjct: 93  DVNWKIVTDVFKKLGKG 109
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1wvfa1 279 Flavoprotein subunit of p-cresol methylhydroxylase 98.26
d1e8ga1 287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 97.65
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 96.98
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 96.38
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 96.06
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 93.1
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 81.46
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.26  E-value=8.1e-07  Score=74.86  Aligned_cols=105  Identities=15%  Similarity=0.070  Sum_probs=65.8

Q ss_pred             eEEEEEcCCHHH---HHHHHHHHHHcCCCceEEEeechhhHHHhhhcCCCCCccchhhhhhhhhhhhhhcCCCccchhhh
Q psy3496          70 KYGSIVFPNFEA---GVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVT  146 (223)
Q Consensus        70 ~t~l~~F~s~~~---A~~av~~i~~sgl~PsalElmD~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (223)
                      .++++.||+.++   |+++++.++++|+.|+++|+||...+..+....+..             |.......|...  ..
T Consensus         4 ~~~~v~f~~~~Dl~~aV~~lr~L~~~gi~p~~~e~~d~~~~~~~~~~~~~~-------------~~~~~~~~p~~~--~~   68 (279)
T d1wvfa1           4 KPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQ-------------YTTEPGHTPDSV--IK   68 (279)
T ss_dssp             EEEEEEECCGGGHHHHHHHHHHHHHTTSSCSCEEEEEHHHHHHHTTCCGGG-------------TCCCSSSCCHHH--HH
T ss_pred             EEEEEEecCHHHHHHHHHHHHHHHHcCCCcceeEecCHHHHHHHHhccccc-------------cccCCCCCCHHH--HH
Confidence            466788997555   566666667799999999999999998876522110             000000011100  00


Q ss_pred             hhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHHHHHcCCccC
Q psy3496         147 TLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPA  205 (223)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i~~~~G~~~~  205 (223)
                      .++.+                .....+.++..++|++++|+.+.+++.++++++|+..+
T Consensus        69 ~l~~~----------------~~~~~w~l~~~l~G~~~~v~~~~~~i~~i~~~~~~~~~  111 (279)
T d1wvfa1          69 QMQKD----------------TGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRI  111 (279)
T ss_dssp             HHHHH----------------HCCCSEEEEEEEEESHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHH----------------hCCCceeEEEEeecCHHHHHHHHHHHHHHHHHCCCceE
Confidence            00000                01113456667899999999999999999999998653
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure