Psyllid ID: psy3511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS
Secondary Structure (PSIPRED)
cEEEEEccccccccEEEEEEcccccccccEEEEEEEEEEccccHHEEccccccccccccccccccccEEEEEEcccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEEEEEEccccccccccEEEEEEEEEEEccHcHEEHcccccccccccEEccccEEEEEEEEcccccccccccEEEEccc
Coil and Loop (DISEMBL)
mlavqckrwgeprvlelttvdkpgpclddEVLVKVMAAGinpvetyirsgqypnlpdlpailgtevsGIVEEVGQGVKHFKVKNIVRSSKS
Flexible Loop (DISEMBL)
mlavqckrwgeprvlelttvdkpgpcLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEevgqgvkhfkvknivrssks
Low Complexity Region (SEG)
MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS
Disordered region (IsUnstruct)
***VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNI******
Disordered Region (DISOPRED)
MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS**
Disordered Region (DISEMBL)
MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS
Disordered Region (DISPRO)
MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
Q6AYT0	329	Quinone oxidoreductase OS	yes	N/A	0.879	0.243	0.5	2e-13
P11415	329	Quinone oxidoreductase OS	yes	N/A	0.879	0.243	0.5	4e-13
Q08257	329	Quinone oxidoreductase OS	no	N/A	0.989	0.273	0.445	3e-12
P47199	331	Quinone oxidoreductase OS	yes	N/A	0.879	0.241	0.487	7e-12
Q5R4S7	329	Quinone oxidoreductase OS	yes	N/A	0.989	0.273	0.434	1e-11
Q28452	330	Quinone oxidoreductase OS	N/A	N/A	0.879	0.242	0.463	1e-11
Q0MVN8	329	Quinone oxidoreductase OS	yes	N/A	0.879	0.243	0.475	2e-11
O97764	330	Zeta-crystallin OS=Bos ta	yes	N/A	0.989	0.272	0.434	2e-11
P28304	327	Quinone oxidoreductase 1	N/A	N/A	0.945	0.262	0.431	4e-11
P40783	327	Quinone oxidoreductase OS	yes	N/A	0.945	0.262	0.431	1e-10

>sp|Q6AYT0|QOR_RAT Quinone oxidoreductase OS=Rattus norvegicus GN=Cryz PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL+L + V  P P    +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct: 8  MRAIRVFEFGGPEVLKLQSDVVVPAP-QSHQVLIKVHACGVNPVETYIRSGTYSRKPALP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             G++V+GI+E VG GV  FK
Sbjct: 67 YTPGSDVAGIIESVGDGVSAFK 88

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 5

>sp|P11415|QOR_CAVPO Quinone oxidoreductase OS=Cavia porcellus GN=CRYZ PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL++ + V  P P  D +VL+KV A GINPVETYIRSG Y  +P LP
Sbjct: 8  MRAIRVFEFGGPEVLKVQSDVAVPIP-KDHQVLIKVHACGINPVETYIRSGTYTRIPLLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             GT+V+G+VE +G  V  FK
Sbjct: 67 YTPGTDVAGVVESIGNDVSAFK 88

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q08257|QOR_HUMAN Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 2/92 (2%)

Query: 1  MLAVQCKRWGEPRVLEL-TTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct: 8  MRAVRVFEFGGPEVLKLRSDIAVPIPK-DHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
             G++V+G++E VG     FK  + V +S +
Sbjct: 67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 98

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species. Enhances the stability of mRNA coding for BCL2. NADPH binding interferes with mRNA binding.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|P47199|QOR_MOUSE Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL+L + V  P P    +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct: 8  MRAIRVFEFGGPEVLKLQSDVVVPVP-QSHQVLIKVHACGVNPVETYIRSGAYSRKPALP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             G++V+GI+E VG  V  FK
Sbjct: 67 YTPGSDVAGIIESVGDKVSAFK 88

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q5R4S7|QOR_PONAB Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M AV+   +G P VL+L + +  P P  D + L+KV A G+NPVETYIRSG Y   P LP
Sbjct: 8  MRAVRVFEFGGPEVLKLQSDIAVPIP-KDHQALIKVHACGVNPVETYIRSGTYSRKPLLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
             G++V+G++E VG     FK  + V +S +
Sbjct: 67 YTPGSDVAGVIEAVGGNASAFKKGDRVFTSST 98

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q28452|QOR_LAMGU Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL+L + V  P P  + +VL+KV A G+NPV+TYIRSG Y   P LP
Sbjct: 8  MRAIRVSEFGGPEVLKLQSDVAVPIP-EEHQVLIKVQACGVNPVDTYIRSGTYSRKPRLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             G +V+G++E VG+ V  FK
Sbjct: 67 YTPGLDVAGLIEAVGERVSAFK 88

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Lama guanicoe (taxid: 9840)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q0MVN8|QOR_PIG Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++  ++G P V++L + V  P P  D++VL+KV A G+NPV+TYIRSG +   P LP
Sbjct: 8  MSAIRVFKFGGPEVMKLQSDVAIPIPK-DNQVLIKVHACGVNPVDTYIRSGTHNMKPLLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             G +V+GIVE VG+ V  FK
Sbjct: 67 YTPGLDVAGIVEAVGEHVSSFK 88

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 2/92 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL+L + V  P P  D +VL+KV A G+NPV+TYIRSG +   P LP
Sbjct: 8  MRAIRVFEFGGPEVLKLQSDVAVPIPK-DHQVLIKVQACGVNPVDTYIRSGTHNIKPLLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
             G +V+GI+E VG+ V  FK  + V ++++
Sbjct: 67 YTPGFDVAGIIEAVGESVSAFKKGDRVFTTRT 98

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|P28304|QOR1_ECOLI Quinone oxidoreductase 1 OS=Escherichia coli (strain K12) GN=qorA PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 4  VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILG 63
          ++  + G P VL+        P  ++E+ V+  A GIN ++TYIRSG YP  P LP+ LG
Sbjct: 5  IEFHKHGGPEVLQAVEFTPADPA-ENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLG 62

Query: 64 TEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
          TE +GIV +VG GVKH K  + V  ++S
Sbjct: 63 TEAAGIVSKVGSGVKHIKAGDRVVYAQS 90

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|P40783|QOR_SALTY Quinone oxidoreductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=qor PE=3 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 4  VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILG 63
          ++  + G P VL+ T    P    + E+ V+  A GIN ++TYIRSG YP  P LPA LG
Sbjct: 5  IEFHKHGGPEVLQ-TVEFTPAEPAEHEIQVENKAIGINFIDTYIRSGLYPP-PSLPAGLG 62

Query: 64 TEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
          TE +G+V +VG GV+H +V + V  ++S
Sbjct: 63 TEAAGVVSKVGNGVEHIRVGDRVVYAQS 90

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
326925553	328	PREDICTED: quinone oxidoreductase-like [	0.989	0.274	0.489	9e-14
405970265	868	Quinone oxidoreductase [Crassostrea giga	0.956	0.100	0.516	2e-13
440736868	308	alcohol dehydrogenase zinc-binding domai	0.879	0.259	0.518	5e-13
447916817	308	alcohol dehydrogenase zinc-binding domai	0.879	0.259	0.518	6e-13
344279000	331	PREDICTED: quinone oxidoreductase-like i	0.879	0.241	0.512	1e-12
344279002	297	PREDICTED: quinone oxidoreductase-like i	0.879	0.269	0.512	1e-12
341901574	327	hypothetical protein CAEBREN_12682 [Caen	0.912	0.253	0.476	2e-12
340375310	361	PREDICTED: quinone oxidoreductase-like [	0.967	0.243	0.478	2e-12
410452943	328	quinone oxidoreductase [Bacillus batavie	0.879	0.243	0.487	3e-12
17507255	328	Protein F39B2.3 [Caenorhabditis elegans]	0.934	0.259	0.465	5e-12

>gi|326925553|ref|XP_003208977.1| PREDICTED: quinone oxidoreductase-like [Meleagris gallopavo]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 2/92 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M AV+   +G P VL L   V  P P  D +VL+KV A G+NPVETYIRSG Y  LP LP
Sbjct: 7  MRAVRVFEFGGPEVLRLQADVPIPAP-KDSQVLIKVHACGVNPVETYIRSGNYARLPTLP 65

Query: 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
             G++V+G++E VG+GV  FK  + V +S +
Sbjct: 66 YTPGSDVAGVIESVGEGVTAFKRGDRVFTSAT 97

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405970265|gb|EKC35186.1| Quinone oxidoreductase [Crassostrea gigas]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 60/89 (67%), Gaps = 2/89 (2%)

Query: 1  MLAVQCKRWGEPRVLEL-TTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P+VL+L T V  P P  +D+VL+KV AAGINPV+TYIRSG Y   P LP
Sbjct: 11 MRAIRVTEFGGPQVLKLETNVPVPRPS-EDQVLIKVHAAGINPVDTYIRSGTYAVKPTLP 69

Query: 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRS 88
             G +V+G+VEE+G  VKH K  + V S
Sbjct: 70 YTPGKDVAGVVEEMGSKVKHLKKGDRVYS 98

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|440736868|ref|ZP_20916451.1| alcohol dehydrogenase zinc-binding domain protein [Pseudomonas fluorescens BRIP34879] gi|440382629|gb|ELQ19123.1| alcohol dehydrogenase zinc-binding domain protein [Pseudomonas fluorescens BRIP34879]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 3/83 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DL 58
          M A++ K++G P+V++LT V  P P    EVLVK    GINPV+  IR GQYP +   +L
Sbjct: 1  MKAIRIKQFGGPQVMQLTQVQVPEP-KPGEVLVKNFFVGINPVDYKIREGQYPQVTTDEL 59

Query: 59 PAILGTEVSGIVEEVGQGVKHFK 81
          P  LG EV+G++EEVGQGV  FK
Sbjct: 60 PLTLGREVAGLIEEVGQGVSDFK 82

Source: Pseudomonas fluorescens BRIP34879

Species: Pseudomonas fluorescens

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|447916817|ref|YP_007397385.1| alcohol dehydrogenase zinc-binding domain protein [Pseudomonas poae RE*1-1-14] gi|445200680|gb|AGE25889.1| alcohol dehydrogenase zinc-binding domain protein [Pseudomonas poae RE*1-1-14]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 3/83 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DL 58
          M A++ K++G P+V++LT V  P P    EVLVK    GINPV+  IR GQYP +   +L
Sbjct: 1  MKAIRIKQFGGPQVMQLTQVQVPEP-KPGEVLVKNFFVGINPVDYKIREGQYPQVTTDEL 59

Query: 59 PAILGTEVSGIVEEVGQGVKHFK 81
          P  LG EV+G++EEVGQGV  FK
Sbjct: 60 PLTLGREVAGLIEEVGQGVSDFK 82

Source: Pseudomonas poae RE*1-1-14

Species: Pseudomonas poae

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|344279000|ref|XP_003411279.1| PREDICTED: quinone oxidoreductase-like isoform 1 [Loxodonta africana]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL+L   V +P P  D +VL+KV A G+NPVETYIRSG Y  LP LP
Sbjct: 8  MKAIRVFEFGGPEVLKLQADVARPIPK-DHQVLIKVHACGVNPVETYIRSGTYNRLPTLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             G++VSG++E VG  V  FK
Sbjct: 67 YTPGSDVSGVIEAVGDNVSAFK 88

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344279002|ref|XP_003411280.1| PREDICTED: quinone oxidoreductase-like isoform 2 [Loxodonta africana]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A++   +G P VL+L   V +P P  D +VL+KV A G+NPVETYIRSG Y  LP LP
Sbjct: 8  MKAIRVFEFGGPEVLKLQADVARPIPK-DHQVLIKVHACGVNPVETYIRSGTYNRLPTLP 66

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
             G++VSG++E VG  V  FK
Sbjct: 67 YTPGSDVSGVIEAVGDNVSAFK 88

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|341901574|gb|EGT57509.1| hypothetical protein CAEBREN_12682 [Caenorhabditis brenneri]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
          A    R+G P V+E+     P P  D++VLV+  AAGINPVETYIR+GQY  LP  P + 
Sbjct: 11 AALVNRFGGPEVIEVAECGMPVPN-DNQVLVRNHAAGINPVETYIRAGQYAKLPTTPYVT 69

Query: 63 GTEVSGIVEEVGQGVKHFKVKNIV 86
          G + +G+VE VG  VK+ K+ + V
Sbjct: 70 GKDGAGVVEFVGANVKNVKIGDRV 93

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|340375310|ref|XP_003386179.1| PREDICTED: quinone oxidoreductase-like [Amphimedon queenslandica]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 6/94 (6%)

Query: 1   MLAVQCKRWGEPRVLELTT---VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
           M A++  R+G P VL L +   +  PGP   +EVLVKV A G+NPVETY+RSG+Y  L  
Sbjct: 37  MKAIRVHRYGGPEVLTLESDVPIPSPGP---EEVLVKVKAVGVNPVETYVRSGRYSRLTP 93

Query: 58  LPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
           LP   GT+ +G+VEEVG  V   K  + V  SK+
Sbjct: 94  LPYTPGTDGAGLVEEVGSSVSGVKKGDRVYVSKT 127

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|410452943|ref|ZP_11306905.1| quinone oxidoreductase [Bacillus bataviensis LMG 21833] gi|409933688|gb|EKN70608.1| quinone oxidoreductase [Bacillus bataviensis LMG 21833]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL-PDLP 59
          M A+Q   +GEP VL+L  V++P P  ++E+ VK+  AG+NP ETYIR+G Y    P+LP
Sbjct: 1  MKAIQMSSFGEPEVLKLVEVEEPVPG-ENEIRVKLYYAGVNPAETYIRAGGYAFFNPELP 59

Query: 60 AILGTEVSGIVEEVGQGVKHFK 81
           I G + SG+V+EVG GV   K
Sbjct: 60 YIPGFDGSGVVDEVGSGVTRLK 81

Source: Bacillus bataviensis LMG 21833

Species: Bacillus bataviensis

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|17507255|ref|NP_493577.1| Protein F39B2.3 [Caenorhabditis elegans] gi|3876910|emb|CAB07384.1| Protein F39B2.3 [Caenorhabditis elegans]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   +R+G P V+E    D P     ++VLV+  AAG+NPV+TYIR+GQY  LP+LP 
Sbjct: 10 MRAAVVRRFGAPDVIEAVESDMP-RLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPY 68

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          + G + +G VE VG+ VK+ KV + V
Sbjct: 69 VPGKDGAGFVELVGESVKNVKVGDRV 94

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
RGD|1311639	329	Cryz "crystallin, zeta (quinon	0.879	0.243	0.5	5.6e-14
UNIPROTKB|P11415	329	CRYZ "Quinone oxidoreductase"	0.879	0.243	0.5	7.2e-14
WB|WBGene00009554	328	F39B2.3 [Caenorhabditis elegan	0.879	0.243	0.481	1.6e-13
ZFIN|ZDB-GENE-050306-24	328	cryz "crystallin, zeta (quinon	0.835	0.231	0.5	2.6e-13
UNIPROTKB|A6NP24	243	CRYZ "Quinone oxidoreductase"	0.989	0.370	0.445	2.7e-13
UNIPROTKB|C9JH92	206	CRYZ "Quinone oxidoreductase"	0.989	0.436	0.445	2.7e-13
UNIPROTKB|F1P4I0	331	CRYZ "Uncharacterized protein"	0.879	0.241	0.5	2.7e-13
UNIPROTKB|E2R3I8	336	CRYZ "Uncharacterized protein"	0.879	0.238	0.487	2.9e-13
UNIPROTKB|A6NN60	295	CRYZ "Quinone oxidoreductase"	0.989	0.305	0.445	4.8e-13
UNIPROTKB|Q08257	329	CRYZ "Quinone oxidoreductase"	0.989	0.273	0.445	7.5e-13

RGD|1311639 Cryz "crystallin, zeta (quinone reductase)" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 41/82 (50%), Positives = 53/82 (64%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M A++   +G P VL+L + V  P P    +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:     8 MRAIRVFEFGGPEVLKLQSDVVVPAP-QSHQVLIKVHACGVNPVETYIRSGTYSRKPALP 66

Query:    60 AILGTEVSGIVEEVGQGVKHFK 81
                G++V+GI+E VG GV  FK
Sbjct:    67 YTPGSDVAGIIESVGDGVSAFK 88

GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS;IDA

GO:0003960 "NADPH:quinone reductase activity" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=IEA;ISO

GO:0070402 "NADPH binding" evidence=ISO;ISS

GO:0070404 "NADH binding" evidence=ISO;ISS

UNIPROTKB|P11415 CRYZ "Quinone oxidoreductase" [Cavia porcellus (taxid:10141)]

 Score = 183 (69.5 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 41/82 (50%), Positives = 54/82 (65%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M A++   +G P VL++ + V  P P  D +VL+KV A GINPVETYIRSG Y  +P LP
Sbjct:     8 MRAIRVFEFGGPEVLKVQSDVAVPIP-KDHQVLIKVHACGINPVETYIRSGTYTRIPLLP 66

Query:    60 AILGTEVSGIVEEVGQGVKHFK 81
                GT+V+G+VE +G  V  FK
Sbjct:    67 YTPGTDVAGVVESIGNDVSAFK 88

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042178 "xenobiotic catabolic process" evidence=ISS

GO:0070402 "NADPH binding" evidence=ISS

GO:0070404 "NADH binding" evidence=ISS

WB|WBGene00009554 F39B2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 180 (68.4 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query:     1 MLAVQCKRWGEPRVLELTTVDKPGPCLD-DEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M A   +R+G P V+E    D P   L+ ++VLV+  AAG+NPV+TYIR+GQY  LP+LP
Sbjct:    10 MRAAVVRRFGAPDVIEAVESDMPR--LEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLP 67

Query:    60 AILGTEVSGIVEEVGQGVKHFKV 82
              + G + +G VE VG+ VK+ KV
Sbjct:    68 YVPGKDGAGFVELVGESVKNVKV 90

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

ZFIN|ZDB-GENE-050306-24 cryz "crystallin, zeta (quinone reductase)" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 39/78 (50%), Positives = 51/78 (65%)

Query:     1 MLAVQCKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M  V+   +G P VL+L + D P P     +VL++V A G+NPVETYIRSG Y   P LP
Sbjct:     7 MRVVRVSEFGGPSVLKLCS-DLPVPSPGQKQVLIRVHACGVNPVETYIRSGSYARTPSLP 65

Query:    60 AILGTEVSGIVEEVGQGV 77
                G++VSG+VE VG+GV
Sbjct:    66 YTPGSDVSGVVEAVGKGV 83

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A6NP24 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 41/92 (44%), Positives = 57/92 (61%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:     8 MRAVRVFEFGGPEVLKLRSDIAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66

Query:    60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
                G++V+G++E VG     FK  + V +S +
Sbjct:    67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 98

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|C9JH92 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 41/92 (44%), Positives = 57/92 (61%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:     8 MRAVRVFEFGGPEVLKLRSDIAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66

Query:    60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
                G++V+G++E VG     FK  + V +S +
Sbjct:    67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 98

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1P4I0 CRYZ "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 41/82 (50%), Positives = 52/82 (63%)

Query:     1 MLAVQCKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M AV+   +G P VL L   D P P  +D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:    10 MRAVRVFEFGGPEVLRLQA-DVPIPSPEDAQVLIKVHACGVNPVETYIRSGNYARKPALP 68

Query:    60 AILGTEVSGIVEEVGQGVKHFK 81
                G++V+G++E VG  V  FK
Sbjct:    69 YTPGSDVAGVIEGVGGRVTAFK 90

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

UNIPROTKB|E2R3I8 CRYZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 40/82 (48%), Positives = 54/82 (65%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M A++   +G P VL+L + V  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:    15 MRAIRVFEFGGPEVLKLRSDVAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYRRKPLLP 73

Query:    60 AILGTEVSGIVEEVGQGVKHFK 81
                G++V+GI+E +G+ V  FK
Sbjct:    74 YTPGSDVAGIIEAIGENVSTFK 95

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A6NN60 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 41/92 (44%), Positives = 57/92 (61%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:     8 MRAVRVFEFGGPEVLKLRSDIAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66

Query:    60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
                G++V+G++E VG     FK  + V +S +
Sbjct:    67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 98

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q08257 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 7.5e-13, P = 7.5e-13
 Identities = 41/92 (44%), Positives = 57/92 (61%)

Query:     1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct:     8 MRAVRVFEFGGPEVLKLRSDIAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66

Query:    60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
                G++V+G++E VG     FK  + V +S +
Sbjct:    67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 98

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IDA

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0042178 "xenobiotic catabolic process" evidence=IDA

GO:0051289 "protein homotetramerization" evidence=IPI

GO:0070404 "NADH binding" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007601 "visual perception" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	4e-28
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	5e-25
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-24
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	8e-24
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	3e-23
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	3e-23
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	7e-21
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-20
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-19
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-18
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	9e-18
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	1e-17
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-17
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-17
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-17
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-16
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	2e-15
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	5e-15
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	9e-15
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	1e-14
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	2e-14
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-14
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	3e-14
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	3e-14
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	9e-14
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-13
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-13
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	3e-13
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	3e-13
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	6e-13
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-12
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-12
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-12
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-12
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-12
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	6e-12
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-11
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	3e-11
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	5e-11
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	8e-11
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-10
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-10
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-10
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	3e-10
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	5e-10
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	5e-10
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	5e-10
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	9e-10
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	4e-09
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-09
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	6e-09
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	7e-09
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-08
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-08
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-08
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-08
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	3e-08
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	4e-08
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-08
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	8e-08
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-07
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	3e-07
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	3e-07
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	3e-07
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	3e-07
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-07
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	4e-07
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-07
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-07
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	5e-07
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	8e-07
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	8e-07
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	2e-06
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	2e-06
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-06
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	6e-06
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	7e-06
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-05
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-05
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-05
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-05
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	5e-05
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-04
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-04
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	6e-04
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	7e-04
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	8e-04
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	9e-04
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	0.001
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	0.001
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	0.003
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	0.003
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	0.003

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  102 bits (257), Expect = 4e-28
 Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A+  + +G P V EL  V +P P    +VLV+V A+G+NP++T IR G     P LPA
Sbjct: 1  MKALVLESFGGPEVFELREVPRPQP-GPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPA 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          ILG +V+G+VE VG+GV  F+V
Sbjct: 60 ILGCDVAGVVEAVGEGVTRFRV 81

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 94.7 bits (236), Expect = 5e-25
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV  + +G P VL++  V +P P    EVLV+V AAG+NP++  +R G  P +  LP 
Sbjct: 1  MKAVVVEEFGGPEVLKVVEVPEPEPG-PGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPF 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          I G+E +G+V  VG GV  FKV
Sbjct: 60 IPGSEAAGVVVAVGSGVTGFKV 81

Length = 326

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 93.4 bits (233), Expect = 1e-24
 Identities = 41/84 (48%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DL 58
          M AV+   +G P VLEL  V  P P    EVLVKV AAG+NPV+  IR G         L
Sbjct: 1  MKAVRIHEYGGPEVLELADVPTPEP-GPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTL 59

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P I G +V+G+V  VG GV  FKV
Sbjct: 60 PLIPGHDVAGVVVAVGPGVTGFKV 83

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 91.4 bits (228), Expect = 8e-24
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV CK  G P  L L  V  P P    EV ++V AAG+N  +  +  G+Y   P LP 
Sbjct: 1  MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPF 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          + G+EV+G+VE VG+GV  FKV
Sbjct: 60 VPGSEVAGVVEAVGEGVTGFKV 81

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 90.0 bits (224), Expect = 3e-23
 Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A++   +G P VL L  +  P P    EVLV+V A+G+NPV+TYIR+G YP LP LP 
Sbjct: 1  MRAIRYHEFGAPDVLRLGDLPVPTPG-PGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPY 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          + G++ +G+VE VG+GV   KV
Sbjct: 60 VPGSDGAGVVEAVGEGVDGLKV 81

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 89.4 bits (223), Expect = 3e-23
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 7/82 (8%)

Query: 3  AVQCKRWGEPRVLELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          AV+  + G P VLE   V   +PGP    EVLV+  A G+N ++TY RSG YP    LP 
Sbjct: 2  AVRIHKTGGPEVLEYEDVPVPEPGP---GEVLVRNTAIGVNFIDTYFRSGLYP--LPLPF 56

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          +LG E +G+VE VG GV  FKV
Sbjct: 57 VLGVEGAGVVEAVGPGVTGFKV 78

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 83.6 bits (208), Expect = 7e-21
 Identities = 39/82 (47%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A+  K  G P VLEL  V KP P    EVL++V AAG+N  +   R G YP  P    
Sbjct: 1  MKAIVIKEPGGPEVLELGEVPKPAPG-PGEVLIRVAAAGVNRADLLQRQGLYPPPPGASD 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          ILG EV+G+V  VG GV  +KV
Sbjct: 60 ILGLEVAGVVVAVGPGVTGWKV 81

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 82.3 bits (204), Expect = 2e-20
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
          M AV+  ++G P VL +  +    PG     EVL++V A G+N  +   R G Y   P L
Sbjct: 1  MRAVRFHQFGGPEVLRIEELPVPAPGA---GEVLIRVEAIGLNRADAMFRRGAYIEPPPL 57

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          PA LG E +G+VE VG GV  F V
Sbjct: 58 PARLGYEAAGVVEAVGAGVTGFAV 81

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 4  VQCKRWGEPRVLELTTVDKPGP-CLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL---P 59
          V   R+G P VL L  V+ P P     EVLVKV AA +NPV+  +R G  P L      P
Sbjct: 1  VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRG-PPKLLLGRPFP 59

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
           I G + +G V  VG GV  FKV
Sbjct: 60 PIPGMDFAGEVVAVGSGVTRFKV 82

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 76.1 bits (188), Expect = 4e-18
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
          AV    +G    L++     P P    EV V+V A G+N  +   R G Y + P  P + 
Sbjct: 2  AVVLTGFGGLDKLKVEKEALPEP-SSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVP 60

Query: 63 GTEVSGIVEEVGQGVKHFKV 82
          G E +G VE VG+GVK FKV
Sbjct: 61 GFECAGTVEAVGEGVKDFKV 80

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 75.3 bits (186), Expect = 9e-18
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVE 71
            +L +  V  P P   DEVLVKV A  +NPV+   +   Y  +P  PAILG + +G V 
Sbjct: 11 GGLLVVVDVPVPKP-GPDEVLVKVKAVALNPVDWKHQD--YGFIPSYPAILGCDFAGTVV 67

Query: 72 EVGQGVKHFKV 82
          EVG GV  FKV
Sbjct: 68 EVGSGVTRFKV 78

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A++    G P VL L  V  P P    EVL++V AAG+N  +   R+G+YP  P    
Sbjct: 1  MKAIEITEPGGPEVLVLVEVPLPVPK-AGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASD 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          ILG EV+G V  VG+GV  +KV
Sbjct: 60 ILGLEVAGEVVAVGEGVSRWKV 81

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV  +  G P VLE   + +P P   DEVLV+V AA +N ++ ++R G       LP 
Sbjct: 1  MKAVVIRGHGGPEVLEYGDLPEPEP-GPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPH 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIVR 87
          ILG++ +G+VE VG GV + K    V 
Sbjct: 60 ILGSDGAGVVEAVGPGVTNVKPGQRVV 86

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G P VL+        P  ++EV V+  A GIN ++TYIRSG YP  P LP+ LGTE +G+
Sbjct: 11 GGPEVLQAVEFTPADPA-ENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGV 68

Query: 70 VEEVGQGVKHFKV 82
          V +VG GVKH KV
Sbjct: 69 VSKVGSGVKHIKV 81

Length = 327

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 73.9 bits (182), Expect = 3e-17
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV  K +G   VL++    KP P   ++VL+KV AAG+N  +T  R G+YP  P    
Sbjct: 2  MRAVTLKGFGGVDVLKIGESPKPAP-KRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSE 60

Query: 61 ILGTEVSGIVEEVGQGVKHFK 81
          ILG EV+G VE+VG  VK FK
Sbjct: 61 ILGLEVAGYVEDVGSDVKRFK 81

Length = 334

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 71.2 bits (175), Expect = 1e-16
 Identities = 29/53 (54%), Positives = 35/53 (66%)

Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
          EVLV+V AAG+   + +IR G YP  P LP ILG E +G+V EVG GV   KV
Sbjct: 1  EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKV 53

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 15/97 (15%)

Query: 1  MLAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSG--------- 50
          M A Q   +G    L L      P     ++VL+KV AA +NP++  +RSG         
Sbjct: 1  MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKK 60

Query: 51 -----QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
                  +  + P  LG + SG+V ++G GVK F++
Sbjct: 61 RKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEI 97

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 67.6 bits (166), Expect = 5e-15
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL--PDL 58
          M A +   +G+P  L L  V  P P    +VLV+V  AG+   + ++  G +  +    L
Sbjct: 1  MKAARLYEYGKP--LRLEDVPVPEPG-PGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKL 57

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P  LG E +G VEEVG GV   K 
Sbjct: 58 PFTLGHENAGWVEEVGSGVDGLKE 81

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 63.4 bits (155), Expect = 9e-15
 Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 28 DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
            EVLV+V AAGI   + +I  G+ P +  LP ILG E +GIVEEVG GV   KV
Sbjct: 1  PGEVLVRVKAAGICGSDLHIYRGEPPPVK-LPLILGHEGAGIVEEVGPGVTGLKV 54

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 66.4 bits (163), Expect = 1e-14
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
          +P  L    + KP P   D +LV+V A  +NPV+T +R+G  P  P  P ILG + SG+V
Sbjct: 14 DPDSLIDIELPKPVPGGRD-LLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVV 71

Query: 71 EEVGQGVKHFKV 82
          E VG  V  FKV
Sbjct: 72 EAVGSEVTLFKV 83

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSG--QYPNLPDL 58
          M A++   +G P VL    V  P P    +V + V AAG++ V+T +RSG    P  P+L
Sbjct: 1  MRAIRLHEFGPPEVLVPEDVPDPVPG-PGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPEL 59

Query: 59 PAILGTEVSGIVEEVGQGV 77
          P + G EV+G+V+ VG GV
Sbjct: 60 PYVPGGEVAGVVDAVGPGV 78

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  +E   +D P      EVLV++ A G+   + +  SG  P     PA+LG E +GI
Sbjct: 12 GKPLEIEEVDLDPPRA---GEVLVRITATGVCHTDAHTLSGDDP--EGFPAVLGHEGAGI 66

Query: 70 VEEVGQGVKHFKV 82
          VE VG+GV   K 
Sbjct: 67 VEAVGEGVTSVKP 79

Length = 366

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 65.2 bits (160), Expect = 3e-14
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
           P  LE+  V  P P   DEVL+KV A GI   + +I  G++      P + G E +G+V
Sbjct: 8  GPGELEVEEVPVPEP-GPDEVLIKVAACGICGTDLHIYEGEFG--AAPPLVPGHEFAGVV 64

Query: 71 EEVGQGVKHFKV 82
            VG  V  FKV
Sbjct: 65 VAVGSKVTGFKV 76

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 10 GEPRVLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSG 68
          GEP  L L  V  P P     EVLV+++AA INP +    SG Y + P LPA+ G E  G
Sbjct: 7  GEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVG 66

Query: 69 IVEEVGQGVKHFKV 82
          +V EVG GV    V
Sbjct: 67 VVVEVGSGVSGLLV 80

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 64.1 bits (157), Expect = 9e-14
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  +E   +D PGP    EVLV++ AAG+   + ++ +G  P    LPA+LG E +G+
Sbjct: 10 GKPLEIEEVELDDPGP---GEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGV 64

Query: 70 VEEVGQGVKHFKV 82
          VEEVG GV   K 
Sbjct: 65 VEEVGPGVTGVKP 77

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 27/97 (27%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI-----------NPVETYIRS 49
          M A+ C    +P  LE+  + +P P    EVLV+V   GI           NP  +Y   
Sbjct: 1  MKALVC---EKPGRLEVVDIPEPVP-GAGEVLVRVKRVGICGSDLHIYHGRNPFASY--- 53

Query: 50 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
                   P ILG E+SG V EVG+GV   KV + V
Sbjct: 54 ---------PRILGHELSGEVVEVGEGVAGLKVGDRV 81

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 62.9 bits (154), Expect = 3e-13
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A +    G    L+L     P P    EVLV+V A  +N  +  I +G+YP     P 
Sbjct: 1  MKAWRLSGGGGLDNLKLVEEPVPEP-GPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPL 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          I  ++ +G V  VG+GV  FKV
Sbjct: 60 IPLSDGAGEVVAVGEGVTRFKV 81

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A    +  +P  L++  V  P P    EVL+KV AAG+   +     G +P     P 
Sbjct: 1  MKAAILHKPNKP--LQIEEVPDPEPG-PGEVLIKVKAAGVCYRDLLFWKGFFPRG-KYPL 56

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          ILG E+ G VEEVG+GV+ FK  + V
Sbjct: 57 ILGHEIVGTVEEVGEGVERFKPGDRV 82

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  +E   V  P      EV +KV+A G+   + ++  G+ P    LP ILG E +GI
Sbjct: 10 GKPLSIEEIEVAPPKAG---EVRIKVVATGVCHTDLHVIDGKLPTP--LPVILGHEGAGI 64

Query: 70 VEEVGQGVKHFKVKNIV 86
          VE +G GV   K  + V
Sbjct: 65 VESIGPGVTTLKPGDKV 81

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 61.9 bits (151), Expect = 6e-13
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 1  MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
            A+     GEP  VL+L + + P P   +EVLVK++AA INP +     G YP  P   
Sbjct: 1  AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 57 -DLPAILGTEVSGIVEEVGQGVKHFKV 82
           + PA+ G E  G V +VG GVK  K 
Sbjct: 61 PEPPAVGGNEGVGEVVKVGSGVKSLKP 87

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 9  WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEV 66
             P  L    + KP      EVLVKV A GI  + +  Y+ +G Y      P +LG E 
Sbjct: 6  LTGPGDLRYEDIPKP-EPGPGEVLVKVKACGICGSDIPRYLGTGAYH----PPLVLGHEF 60

Query: 67 SGIVEEVGQGVKHFKV 82
          SG VEEVG GV    V
Sbjct: 61 SGTVEEVGSGVDDLAV 76

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74
          L++  V  P P    EVL++V  AG+NPV+  + +      P +P I G E +G+VEEVG
Sbjct: 14 LKVEDVKDPKP-GPGEVLIRVKMAGVNPVDYNVINA-VKVKP-MPHIPGAEFAGVVEEVG 70

Query: 75 QGVKHFKV 82
            VK  K 
Sbjct: 71 DHVKGVKK 78

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 1  MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M A    ++G+P  VLE+  V KP P    EVLV+   + I+  + +   G Y   P+LP
Sbjct: 1  MRAAVHTQFGDPADVLEIGEVPKPTPG-AGEVLVRTTLSPIHNHDLWTIRGTYGYKPELP 59

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
          AI G+E  G+V+ VG+GVK  +V
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQV 82

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G P VLE   +D P P   DEVLV+++A GI   +  +R G  P    LPA+LG E +G+
Sbjct: 12 GGPFVLEDVELDDPRP---DEVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGV 66

Query: 70 VEEVGQGVKHFKV 82
          VE VG  V   K 
Sbjct: 67 VEAVGSAVTGLKP 79

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 6  CKRW-----GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           K W     G    L L  ++ PGP    EVLVKV AAG+NPV+  + +   P     P 
Sbjct: 1  MKAWVLPKPGAALQLTLEEIEIPGP-GAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPH 58

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          + G + +G+V  VG  V  +KV
Sbjct: 59 VPGVDGAGVVVAVGAKVTGWKV 80

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 59.1 bits (144), Expect = 6e-12
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   K++G+P  +E   V +PGP    EVL+KV A G+   + ++  G +P    LP 
Sbjct: 4  MKAAVLKKFGQPLEIEEVPVPEPGP---GEVLIKVEACGVCHTDLHVAKGDWPVPK-LPL 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          I G E+ G V EVG+GV   KV
Sbjct: 60 IPGHEIVGTVVEVGEGVTGLKV 81

Length = 339

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            AVQ    G P  LEL   D P P    EVL+KV A G+   + +++ G  P L   P 
Sbjct: 1  YKAVQVTEPGGP--LELVERDVPLP-GPGEVLIKVEACGVCHSDAFVKEGAMPGLS-YPR 56

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          + G EV G ++ VG+GV  +KV
Sbjct: 57 VPGHEVVGRIDAVGEGVSRWKV 78

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A        P  + L  V  P P    EVLVKV A GI   +     G + +    P 
Sbjct: 1  MKAA---VLHGPNDVRLEEVPVPEPG-PGEVLVKVRACGICGTDVKKIRGGHTD-LKPPR 55

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          ILG E++G + EVG GV  FKV
Sbjct: 56 ILGHEIAGEIVEVGDGVTGFKV 77

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
          A      G+P V+E   V  P      EV +K++A  +   +     G        P IL
Sbjct: 5  AAVAWEAGKPLVIEEIEVAPPKAN---EVRIKMLATSVCHTDILAIEGFKA--TLFPVIL 59

Query: 63 GTEVSGIVEEVGQGVKHFKVKNIV 86
          G E +GIVE VG+GV + K  + V
Sbjct: 60 GHEGAGIVESVGEGVTNLKPGDKV 83

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 17/95 (17%)

Query: 1   MLAVQCKRWGEPR---VLELTTVDKPGPCLDDEVLVKVMAAGIN----------PVETYI 47
             A++ +R+G+P     LE   V + GP    EVLV VMAAG+N          PV T+ 
Sbjct: 15  AFAIRPERYGDPAQAIQLEDVPVPELGP---GEVLVAVMAAGVNYNNVWAALGEPVSTFA 71

Query: 48  RSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
              +         I G++ SGIV  VG+GVK++KV
Sbjct: 72  ARQRRGRDEPY-HIGGSDASGIVWAVGEGVKNWKV 105

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 16/88 (18%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS------GQYPN 54
          M A   + +GEP  LE+  V  P     D V+V+V A G+       RS      G  P 
Sbjct: 1  MRAAVYEEFGEP--LEIREVPDP-EPPPDGVVVEVEACGV------CRSDWHGWQGHDP- 50

Query: 55 LPDLPAILGTEVSGIVEEVGQGVKHFKV 82
             LP + G E +G+V EVG+ V  ++V
Sbjct: 51 DVTLPHVPGHEFAGVVVEVGEDVSRWRV 78

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
          DEV V+V AAG+N  +  +  G  P        LG E SGIV  VG GV   KV
Sbjct: 1  DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKV 51

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   + +GE    E+  V  P P    EVLVK+ A+G+   + +   G +P  P LP 
Sbjct: 1  MKAAVVEEFGEKPY-EVKDVPVPEP-GPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPL 58

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          I G E +G+V  VG GV   KV
Sbjct: 59 IGGHEGAGVVVAVGPGVSGLKV 80

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV    + +     +  V  P P   DEV++KV  AG+   +     G YP +   P 
Sbjct: 1  MKAVILPGFKQG--YRIEEVPDPKPG-KDEVVIKVNYAGLCYRDLLQLQGFYPRM-KYPV 56

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRS 88
          ILG EV G VEEVG+ VK FK  + V S
Sbjct: 57 ILGHEVVGTVEEVGENVKGFKPGDRVAS 84

Length = 334

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 18/100 (18%)

Query: 1   MLAVQCKRWGEPR-VLELTTVDKP--GPCLDDEVLVKVMAAGIN----------PVETYI 47
             A++ +R G+PR  ++L  V  P  GP    EVLV VMAAG+N          PV T  
Sbjct: 10  AFAIREERDGDPRQAIQLEVVPVPELGP---GEVLVAVMAAGVNYNNVWAALGEPVST-F 65

Query: 48  RSGQYPNLPDLP-AILGTEVSGIVEEVGQGVKHFKVKNIV 86
              +     DLP  I+G++ SG+V  VG GV  +KV + V
Sbjct: 66  AFLRKYGKLDLPFHIIGSDASGVVWRVGPGVTRWKVGDEV 105

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 53.8 bits (130), Expect = 5e-10
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 1  MLAVQCKRWGEPRV---LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
          M A+  + +G+P     L L   + P P    EVL+KV AA INP +     GQY +   
Sbjct: 1  MKALLLEEYGKPLEVKELSLPEPEVPEPG-PGEVLIKVEAAPINPSDLGFLKGQYGSTKA 59

Query: 58 LPAILGTEVSGIVEEVGQGVKH 79
          LP   G E SG V   G G   
Sbjct: 60 LPVPPGFEGSGTVVAAGGGPLA 81

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 1  MLAVQCKRWG--EPRVLELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP 56
          M A+  ++ G  E   L LT V   +PGP    EVL+KV A G+   + +I  G  P  P
Sbjct: 1  MKAMVLEKPGPIEENPLRLTEVPVPEPGP---GEVLIKVEACGVCRTDLHIVEGDLPP-P 56

Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
           LP I G E+ G VE VG GV  F V + V
Sbjct: 57 KLPLIPGHEIVGRVEAVGPGVTRFSVGDRV 86

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A +  + G   +L L  V  P P    EVLVKV AAG+   + +I  G  P L  LP 
Sbjct: 1  MKAWRFHK-GSKGLLVLEEVPVPEP-GPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPL 58

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
           LG E++G V EVG GV +FKV + V
Sbjct: 59 TLGHEIAGTVVEVGAGVTNFKVGDRV 84

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A+  ++ G P VL+L  +  P P     VL++V A G+N  E + R G  P++   P 
Sbjct: 1  MKAIVIEQPGGPEVLKLREIPIPEP-KPGWVLIRVKAFGLNRSEIFTRQGHSPSV-KFPR 58

Query: 61 ILGTEVSGIVEE-------VGQGV 77
          +LG E  G VEE        GQ V
Sbjct: 59 VLGIEAVGEVEEAPGGTFTPGQRV 82

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 8  RWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVS 67
          R G P VL++   D P P    EV+VKV A+G++  +  +R G YP+ P LP   G ++ 
Sbjct: 8  RRGGPEVLKVVEADLPEPAAG-EVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLV 66

Query: 68 GIVEEVGQGVKHFKVKNIV 86
          G V+ +G GV  F+V + V
Sbjct: 67 GRVDALGSGVTGFEVGDRV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)

Query: 7   KRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI---------NPVETYIRSGQYPNLPD 57
           K W  P  L +  V  P     DE+L++V A GI            + YI    YP L +
Sbjct: 32  KVWRYPE-LRVEDVPVPNL-KPDEILIRVKACGICGSDIHLYETDKDGYI---LYPGLTE 86

Query: 58  LPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88
            P ++G E SG+VE+ G+ VK+F+  + V +
Sbjct: 87  FPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA 117

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 50.5 bits (121), Expect = 7e-09
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
           +P  L    + KP P   D +LV+V A  +NPV+T +R+   P     P ILG + +G+
Sbjct: 12 TDPDALVDIDLPKPKPGGRD-LLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGV 69

Query: 70 VEEVGQGVKHFKV 82
          V  VG  V  FK 
Sbjct: 70 VVAVGDEVTLFKP 82

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  +E   +D P      EVLVK++A+G+   + ++ +G  P +P  P + G E +G+
Sbjct: 11 GQPWEVEEIELDDPK---AGEVLVKLVASGLCHSDEHLVTGDLP-MPRYPILGGHEGAGV 66

Query: 70 VEEVGQGVKHFKV 82
          V +VG GV   K 
Sbjct: 67 VTKVGPGVTGVKP 79

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  +E   V  P      EV +K++A G+   + Y  SG  P     P ILG E +GI
Sbjct: 12 GKPLSIEEVEVAPPKA---GEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGI 67

Query: 70 VEEVGQGVKHFKVKNIV 86
          VE VG+GV   K  + V
Sbjct: 68 VESVGEGVTSVKPGDHV 84

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 49.3 bits (119), Expect = 1e-08
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 33 VKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
          ++V AAG+N  +  I  G YP      A+LG E +G+V  VG GV    V
Sbjct: 1  IEVRAAGLNFRDVLIALGLYPG----EAVLGGECAGVVTRVGPGVTGLAV 46

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 18/94 (19%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI----------NPVETYIRSG 50
          M A    R+   + + +  V +P P    EV +KV   GI           P+  +I + 
Sbjct: 1  MKAA---RYHGRKDIRVEEVPEP-PVKPGEVKIKVAWCGICGSDLHEYLDGPI--FIPTE 54

Query: 51 QYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKV 82
           +P+L     P  LG E SG+V EVG GV  FKV
Sbjct: 55 GHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKV 88

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
           P  +EL  V +P P    EVL+KV AAGI   + +I  G Y    + P +LG E SG +
Sbjct: 10 GPGNVELREVPEPEPG-PGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTI 67

Query: 71 EEVGQGVKHFKV 82
           EVG  V+ +KV
Sbjct: 68 VEVGPDVEGWKV 79

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 21/97 (21%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY------- 52
          M AV     G    L     V  P P    EVL++V A G+N  +   R G Y       
Sbjct: 1  MRAVLLTGHGGLDKLVYRDDVPVPTPA-PGEVLIRVGACGVNNTDINTREGWYSTEVDGA 59

Query: 53 ------------PNLPDLPAILGTEVSGIVEEVGQGV 77
                            P I G ++ G V  VG+GV
Sbjct: 60 TDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGV 96

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 48.1 bits (115), Expect = 4e-08
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVE 71
          P V+E   +D PGP    EVLVK+ AAG+   +  + +G  P    LP  LG E +G+V 
Sbjct: 20 PLVIEEVELDPPGP---GEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVV 74

Query: 72 EVGQGVKHFKV 82
          EVG+GV   +V
Sbjct: 75 EVGEGVTDLEV 85

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++A GI   + ++ SG+       P ILG E +GIVE VG+GV   K
Sbjct: 34 EVRIKIVATGICRSDDHVVSGKLVTP--FPVILGHEAAGIVESVGEGVTTVK 83

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74
          +    V  PGP    EVLVK    GIN  +    +G+Y      P   G E  G V  VG
Sbjct: 20 IVDVPVPLPGP---GEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVG 76

Query: 75 QGVKHFKVKNIV 86
          +GV  FKV + V
Sbjct: 77 EGVTDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
          AV     G     E+  V +PGP    EVL+K+ A G+   + +   G +      P + 
Sbjct: 3  AVVHAAGGPLEPEEVP-VPEPGP---GEVLIKIEACGVCHTDLHAAEGDWGGSK-YPLVP 57

Query: 63 GTEVSGIVEEVGQGVKHFKV 82
          G E+ G V EVG GV+  KV
Sbjct: 58 GHEIVGEVVEVGAGVEGRKV 77

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  L++  VD   P    EVLV+++A G+   + +  SG  P     P ILG E +GI
Sbjct: 11 GQP--LKIEEVDVEMP-QKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGI 66

Query: 70 VEEVGQGVKHFKVKNIV 86
          VE VG+GV   KV + V
Sbjct: 67 VEAVGEGVTSVKVGDHV 83

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
           P  + L  V  P      + +V+V A  I   + +I  G  P       ILG E  G V
Sbjct: 8  GPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAK-HGMILGHEFVGEV 66

Query: 71 EEVGQGVKHFKV 82
           EVG  VK  K 
Sbjct: 67 VEVGSDVKRLKP 78

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P V+E   V  P      EV +K++   +   + Y    +    P  P ILG E +GI
Sbjct: 12 GKPLVIEEVEVAPPQAM---EVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGI 67

Query: 70 VEEVGQGVKHFK 81
          VE VG+GV   K
Sbjct: 68 VESVGEGVTDLK 79

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 19 TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
           V  PGP    EV ++V A  +N  +     G YP +P  P   G E SG+V  VG  V 
Sbjct: 1  EVAPPGP---GEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVT 57

Query: 79 HFKVKNIV 86
             V + V
Sbjct: 58 RLAVGDEV 65

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   K    P  +E   V +P    + E+L++V A G+   + ++  G+ P  P  P 
Sbjct: 1  MKAAVLKGPNPPLTIEEIPVPRPK---EGEILIRVAACGVCHSDLHVLKGELPFPP--PF 55

Query: 61 ILGTEVSGIVEEVGQGVKH 79
          +LG E+SG V EVG  V++
Sbjct: 56 VLGHEISGEVVEVGPNVEN 74

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A+    W     + +  V  P      + +V+V A  I   + ++  G  P +     
Sbjct: 1  MKALV---WHGKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKK-GD 56

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          ILG E  G+VEEVG  V++ KV
Sbjct: 57 ILGHEFMGVVEEVGPEVRNLKV 78

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 15/93 (16%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYI-------RSGQYP 53
          M A+   + G    L    V KPGP    EVL+KV+AA I   + +I       +S   P
Sbjct: 1  MKAIVKTKAGPGAELVEVPVPKPGP---GEVLIKVLAASICGTDVHIYEWDEWAQSRIKP 57

Query: 54 NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
               P I G E +G V EVG+GV   KV + V
Sbjct: 58 -----PLIFGHEFAGEVVEVGEGVTRVKVGDYV 85

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
           V  +  G P  LE   V  PGP    EV+V + A G+   + + R G   +  + P +L
Sbjct: 4  GVIARSKGAPVELETIVVPDPGP---GEVIVDIQACGVCHTDLHYREGGIND--EFPFLL 58

Query: 63 GTEVSGIVEEVGQGVKHFKVKNIV 86
          G E +G+VE VG+GV      + V
Sbjct: 59 GHEAAGVVEAVGEGVTDVAPGDYV 82

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 15 LELTTVDKP--GPCLDDEVLVKVMAAGINPVETYIRS------GQYPNLPDLPAILGTEV 66
          L LT V  P  GP   ++VL+KV    I   + +I +         P    +P ++G E 
Sbjct: 13 LWLTDVPVPEPGP---NDVLIKVKKTAICGTDVHIYNWDEWAQKTIP----VPMVVGHEF 65

Query: 67 SGIVEEVGQGVKHFKVKNIV 86
           G V EVG  V  FKV + V
Sbjct: 66 VGEVVEVGSEVTGFKVGDRV 85

Length = 341

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSG 68
           P  L L     P P    EVLV+V A GI  + V  Y        +   P +LG E +G
Sbjct: 6  GPGDLRLEERPIPEP-GPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAG 64

Query: 69 IVEEVGQGVKHFKV 82
           V  VG GV H KV
Sbjct: 65 TVVAVGSGVTHLKV 78

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 19 TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
           +  P    D+E++VKV AA +NPV+  + +    +       LG + SG++ +VG  V 
Sbjct: 19 KLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVA 78

Query: 79 H-FKV 82
            +KV
Sbjct: 79 SEWKV 83

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A+          L +  + KP P    E LV+V+ AGI   +  I  G YP     P 
Sbjct: 1  MKAL---VLDGGLDLRVEDLPKPEPP-PGEALVRVLLAGICNTDLEIYKGYYP----FPG 52

Query: 61 ILGTEVSGIVEEVGQG 76
          + G E  GIVEE  + 
Sbjct: 53 VPGHEFVGIVEEGPEA 68

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD--- 57
          M A      G+P  LE   +D P P    EVLVKV A G+   + +I  G Y +L     
Sbjct: 1  MKAAAVVEPGKP--LEEVEIDTPKP-PGTEVLVKVTACGVCHSDLHIWDGGY-DLGGGKT 56

Query: 58 ---------LPAILGTEVSGIVEEVGQGVKHFKV 82
                   LP +LG E+ G V  VG      KV
Sbjct: 57 MSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKV 90

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 8  RWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVS 67
           +     + L     P      +VL++V A GI   + +I  G  P +P    ILG E  
Sbjct: 6  VYVGGGDVRLEEPPPP-IPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFV 64

Query: 68 GIVEEVGQGVKHFKV 82
          G V EVG  V+ FKV
Sbjct: 65 GEVVEVGV-VRGFKV 78

Length = 350

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS--GQYPNLPDLPAILGTEVS 67
          GE  V+E   V  P P    E+ +KV++  +       RS    + +    P I G E S
Sbjct: 22 GEALVMEEVEVSPPQPL---EIRIKVVSTSL------CRSDLSAWESQALFPRIFGHEAS 72

Query: 68 GIVEEVGQGVKHFKVKNIV 86
          GIVE +G+GV  F+  + V
Sbjct: 73 GIVESIGEGVTEFEKGDHV 91

Length = 378

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV    +  P  + +  V  P      + +VKV AA I   + +I  G  P+ P    
Sbjct: 1  MKAV---VFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTP--GF 55

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89
          +LG E  G V EVG  V+  KV + V S 
Sbjct: 56 VLGHEFVGEVVEVGPEVRTLKVGDRVVSP 84

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          GEP V+E   VD P      EV +K++   I   +     G+       P ILG E +GI
Sbjct: 20 GEPLVMEEIRVDPPQKM---EVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGI 76

Query: 70 VEEVGQGVKHFK 81
          VE VG+GV+  K
Sbjct: 77 VESVGEGVEDLK 88

Length = 381

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G P  + +  V  P      + +V++    I   + ++  G+     +   +LG E  G 
Sbjct: 7  GGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG--AEPGLVLGHEAMGE 64

Query: 70 VEEVGQGVKHFKVKNIV 86
          VEEVG  V+  KV + V
Sbjct: 65 VEEVGSAVESLKVGDRV 81

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 16 ELTTVD--KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVE 71
          ELT V   +PGP    EVL+KV+A  I    V  Y       +    P ++G EV+G V 
Sbjct: 12 ELTEVPVPEPGP---GEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVV 68

Query: 72 EVGQGVKHFKVKNIV 86
           +G GV+  KV + V
Sbjct: 69 GIGPGVEGIKVGDYV 83

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 22 KPGPCLDDEVLVKVMAAGINPVET-YIRSGQYPNLPDLPAIL-GTEVSGIVEEVGQGVKH 79
           PGP    EVL++V A+G+   +  Y   G     P    ++ G E +G+V  VG GV H
Sbjct: 21 VPGP---GEVLLRVKASGLCGSDLHYYYHG--HRAPAYQGVIPGHEPAGVVVAVGPGVTH 75

Query: 80 FKV 82
          F+V
Sbjct: 76 FRV 78

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 22 KPGPCLDDEVLVKVMAAGINPVET---YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
          +  P   D+V +K+   G+    +    +R+   P     P + G E+ GIV  VG  V 
Sbjct: 18 ERRPLGPDDVDIKITYCGV--CHSDLHTLRNEWGP--TKYPLVPGHEIVGIVVAVGSKVT 73

Query: 79 HFKV 82
           FKV
Sbjct: 74 KFKV 77

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 9  WGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVS 67
             P + LE+  V  P       VLV+V  AG+   + +  +G+ P +P LP ILG E  
Sbjct: 6  LTGPGKPLEIREVPLPDL-EPGAVLVRVRLAGVCGSDVHTVAGRRPRVP-LPIILGHEGV 63

Query: 68 GIVEEVGQGVK 78
          G V  +G GV 
Sbjct: 64 GRVVALGGGVT 74

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVET-YIRSGQY-PNLPDLPAILGTEVSGI 69
             L +     P P    EV V+V A GI   +  Y + G +       P +LG EVSG+
Sbjct: 6  AGDLRVEERPAPEPG-PGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGV 64

Query: 70 VEEVGQGVKHFKVKNIV 86
          VE VG GV        V
Sbjct: 65 VEAVGPGVTGLAPGQRV 81

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74
          L L T+       + +VL++V  + +N  +    +G      + P   G + +G V    
Sbjct: 15 LFLRTLPLD-DLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSSD 73

Query: 75 QG 76
            
Sbjct: 74 DP 75

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVET-YIRSGQYPNL-PDLPAILGTEVSG 68
           P   E+    +P P    +VLV+V   G+   +      G+   + P  P   G E  G
Sbjct: 3  GPGRFEVEEHPRPTP-GPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWG 61

Query: 69 IVEEVGQGVKHFKV 82
           V  +G GV+   V
Sbjct: 62 RVVALGPGVRGLAV 75

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 36.1 bits (84), Expect = 9e-04
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVE 71
          P  +      KP      + +VK++   I   + +I  G  P +     ILG E  G+VE
Sbjct: 9  PGKISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTP-GRILGHEGVGVVE 67

Query: 72 EVGQGVKHFKV 82
          EVG  V +FKV
Sbjct: 68 EVGSAVTNFKV 78

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 19 TVDKPGPCLDDEVLVKVMAAGI-----NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV 73
          T+ K GP   ++V++KV+  GI     + ++  +    YP +P      G EV G V EV
Sbjct: 28 TLRKTGP---EDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVP------GHEVVGEVVEV 78

Query: 74 GQGVKHFKVKNIV 86
          G  V  F V +IV
Sbjct: 79 GSDVSKFTVGDIV 91

Length = 357

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 20 VDKPGP-CLDDEVLVKVMAAGINPVETYIRSGQYPNL-PDLPAILGTEVSGIVEEVGQGV 77
          ++KP P C  ++ +V+  A      + +   G  P     +  ILG E  G+VEEVG  V
Sbjct: 15 IEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGM--ILGHEAVGVVEEVGSEV 72

Query: 78 KHFKV 82
          K FK 
Sbjct: 73 KDFKP 77

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 13 RVLELTTVDKPGPCLDDEVLVKVMAAGINP--VETYIRSGQYPNLPD----LPAILGTEV 66
            L L   + P    DDE+LV+V++  +     +  ++   +  +P+     P ILG E 
Sbjct: 12 GDLRLEKFELPEIA-DDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEF 70

Query: 67 SGIVEEVGQGVKH 79
          +G + +VG+  + 
Sbjct: 71 AGTILKVGKKWQG 83

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
          +P  L +     P P    EV VKV  AGI   +++I  G  P     P ++G E  G++
Sbjct: 8  KPNSLAIEERPIPQPAAG-EVRVKVKLAGICGSDSHIYRGHNP-FAKYPRVIGHEFFGVI 65

Query: 71 EEVGQGVKHFKVKNIV 86
          + VG+GV   ++   V
Sbjct: 66 DAVGEGVDAARIGERV 81

Length = 339

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 13 RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD----LPAILGTEVSG 68
            + +  + +P P    EVLV+ +  G+   +  I +G+Y   P     L  +LG E  G
Sbjct: 11 PGVRVVDIPEPEP-TPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFL--VLGHEALG 67

Query: 69 IVEEVGQG 76
          +VEEVG G
Sbjct: 68 VVEEVGDG 75

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.92
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.89
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.88
KOG0023|consensus	360		99.87
KOG1197|consensus	336		99.84
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.83
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.83
PLN02740	381	Alcohol dehydrogenase-like	99.83
KOG0022|consensus	375		99.83
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.82
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.82
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.82
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.81
KOG0024|consensus	354		99.8
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.8
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.8
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.8
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.79
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.78
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.78
PLN02827	378	Alcohol dehydrogenase-like	99.77
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.77
KOG0025|consensus	354		99.76
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.75
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.74
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.74
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.74
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.73
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.73
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.73
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.72
PRK10083	339	putative oxidoreductase; Provisional	99.72
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.71
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.71
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.71
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.7
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.7
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.7
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.7
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.7
PTZ00354	334	alcohol dehydrogenase; Provisional	99.7
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.7
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.7
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.69
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.69
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.69
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.69
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.69
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.69
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.69
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.69
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.68
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.68
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.68
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.68
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.68
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.68
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.68
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.68
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.67
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.67
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.67
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.67
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.67
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.67
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.66
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.66
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.66
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.66
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.66
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.66
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.66
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.66
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.66
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.65
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.65
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.65
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.65
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.65
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.65
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.64
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.64
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.64
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.64
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.64
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.63
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.63
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.63
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.62
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.62
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.62
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.61
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.61
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.61
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.61
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.61
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.59
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.59
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.58
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.58
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.58
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.57
PLN02702	364	L-idonate 5-dehydrogenase	99.57
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.57
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.56
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.54
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.54
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.53
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.52
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.52
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.51
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.5
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.49
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.46
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.46
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.44
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.38
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.28
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.16
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.13
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	98.85
KOG1198|consensus	347		98.78
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	98.35
KOG1196|consensus	343		98.1
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	98.07
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	95.05
KOG1202|consensus	2376		94.72
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	93.87
PTZ00414	100	10 kDa heat shock protein; Provisional	93.17
PRK00364	95	groES co-chaperonin GroES; Reviewed	92.62
PRK14533	91	groES co-chaperonin GroES; Provisional	91.21
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	90.2
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	89.84
KOG1641|consensus	104		83.65

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.92  E-value=2.9e-24  Score=141.07  Aligned_cols=84  Identities=39%  Similarity=0.583  Sum_probs=79.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++++  +++.+.+.|+ |+++||+|+|+|+|+|++|++..+|.++.. .+|.++|||.+|+|+++|++|++|
T Consensus         4 mkA~~~~~~~~p--l~i~e~~~p~-p~~~eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~vG~~V~~~   79 (339)
T COG1064           4 MKAAVLKKFGQP--LEIEEVPVPE-PGPGEVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEVGEGVTGL   79 (339)
T ss_pred             eEEEEEccCCCC--ceEEeccCCC-CCCCeEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEecCCCccC
Confidence            899999998888  9999999999 999999999999999999999999999754 499999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||..
T Consensus        80 k~GDrVgV   87 (339)
T COG1064          80 KVGDRVGV   87 (339)
T ss_pred             CCCCEEEe
Confidence            99999976

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.89  E-value=3.7e-22  Score=131.51  Aligned_cols=88  Identities=42%  Similarity=0.663  Sum_probs=82.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+..+++++.+++++.+.|. +++|||+||++++|+|+.|++.+.|......++|+++|.|++|+|+++|++++.|
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~-p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~   79 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPE-PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGF   79 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCC-CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCc
Confidence            899999999999889999999999 9999999999999999999999999744345689999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+..
T Consensus        80 ~~GdrV~~~   88 (326)
T COG0604          80 KVGDRVAAL   88 (326)
T ss_pred             CCCCEEEEc
Confidence            999999986

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.88  E-value=3.7e-22  Score=130.42  Aligned_cols=85  Identities=36%  Similarity=0.491  Sum_probs=78.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      +|++++.++++|  |+++++++++ |+++||+||+.++|+||+|...++|..+.  .+|.++|||.+|+|+++|++|+++
T Consensus         3 ~~aAV~~~~~~P--l~i~ei~l~~-P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~v   77 (366)
T COG1062           3 TRAAVAREAGKP--LEIEEVDLDP-PRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSV   77 (366)
T ss_pred             ceEeeeecCCCC--eEEEEEecCC-CCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCcccc
Confidence            578888888888  9999999999 99999999999999999999999998875  499999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||+|+..+
T Consensus        78 kpGDhVI~~f   87 (366)
T COG1062          78 KPGDHVILLF   87 (366)
T ss_pred             CCCCEEEEcc
Confidence            9999998653

>KOG0023|consensus

Probab=99.87  E-value=1.1e-21  Score=127.31  Aligned_cols=84  Identities=21%  Similarity=0.301  Sum_probs=78.9

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      ++|.+.++++...+++.+++.|+ ++++||+|+++|+|+|++|+++..|.++. .++|.++|||.+|+|+++|++|++|+
T Consensus        11 ~g~~~~~~~G~l~p~~~~~~~~~-~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~k   88 (360)
T KOG0023|consen   11 FGWAARDPSGVLSPEVFSFPVRE-PGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFK   88 (360)
T ss_pred             EEEEEECCCCCCCcceeEcCCCC-CCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCccccc
Confidence            57888888887778889999999 99999999999999999999999999987 78999999999999999999999999


Q ss_pred             CCCEEE
Q psy3511          82 VKNIVR   87 (91)
Q Consensus        82 ~Gd~V~   87 (91)
                      +||||-
T Consensus        89 iGD~vG   94 (360)
T KOG0023|consen   89 IGDRVG   94 (360)
T ss_pred             ccCeee
Confidence            999984

>KOG1197|consensus

Probab=99.84  E-value=1.8e-20  Score=118.98  Aligned_cols=86  Identities=31%  Similarity=0.442  Sum_probs=81.0

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |.+++++.|+.+.+++++.|.|+ |.++|++||.+|+|+|+.|.+.++|.|. ..++|.++|.|++|+|+++|+++++++
T Consensus        10 k~i~v~e~Ggydvlk~ed~pv~~-papgel~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrk   87 (336)
T KOG1197|consen   10 KCIVVTEFGGYDVLKLEDRPVPP-PAPGELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRK   87 (336)
T ss_pred             eEEEEeccCCcceEEEeeecCCC-CCCCceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCccccc
Confidence            67888999999999999999999 9999999999999999999999999885 568999999999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||||+..
T Consensus        88 vGDrVayl   95 (336)
T KOG1197|consen   88 VGDRVAYL   95 (336)
T ss_pred             cccEEEEe
Confidence            99999764

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.83  E-value=6e-20  Score=123.48  Aligned_cols=83  Identities=25%  Similarity=0.353  Sum_probs=72.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCC-------CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEe
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCL-------DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV   73 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-------~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~v   73 (91)
                      ||++++..++   .+++++.+.|. ++       +||||||+.++|||++|++.+.|.++  ..+|.++|||++|+|+++
T Consensus         3 mka~v~~~~~---~~~~~e~~~P~-~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~--~~~p~i~GhE~~G~V~~v   76 (393)
T TIGR02819         3 NRGVVYLGPG---KVEVQDIDYPK-LELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT--APTGLVLGHEITGEVIEK   76 (393)
T ss_pred             ceEEEEecCC---ceeEEeccCCc-ccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC--CCCCccccceeEEEEEEE
Confidence            8999987543   58889999988 64       68999999999999999999987643  256899999999999999


Q ss_pred             CCCCCCCCCCCEEEee
Q psy3511          74 GQGVKHFKVKNIVRSS   89 (91)
Q Consensus        74 G~~~~~~~~Gd~V~~~   89 (91)
                      |+++++|++||||...
T Consensus        77 G~~V~~~~vGdrV~~~   92 (393)
T TIGR02819        77 GRDVEFIKIGDIVSVP   92 (393)
T ss_pred             cCccccccCCCEEEEe
Confidence            9999999999999763

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.83  E-value=6e-20  Score=122.25  Aligned_cols=86  Identities=35%  Similarity=0.460  Sum_probs=77.7

Q ss_pred             CeEEEEcccCC------CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeC
Q psy3511           1 MLAVQCKRWGE------PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVG   74 (91)
Q Consensus         1 m~a~~~~~~~~------~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG   74 (91)
                      |||+++.+++.      ++.+++++.+.|. ++++||+||+.+++||++|++.+.|.++  ..+|.++|||++|+|+++|
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~-~~~~evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~GhE~~G~V~~vG   77 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDP-PGPGEVLVKIAAAGLCHSDLSVINGDRP--RPLPMALGHEAAGVVVEVG   77 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCC-CCCCeEEEEEEEEeeCccchHhhcCCCC--CCCCccCCccceeEEEEeC
Confidence            99999999875      4779999999999 9999999999999999999999988653  2468899999999999999


Q ss_pred             CCCCCCCCCCEEEee
Q psy3511          75 QGVKHFKVKNIVRSS   89 (91)
Q Consensus        75 ~~~~~~~~Gd~V~~~   89 (91)
                      +++++|++||||++.
T Consensus        78 ~~v~~~~~GdrV~~~   92 (371)
T cd08281          78 EGVTDLEVGDHVVLV   92 (371)
T ss_pred             CCCCcCCCCCEEEEc
Confidence            999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=99.83  E-value=1.1e-19  Score=121.49  Aligned_cols=86  Identities=29%  Similarity=0.356  Sum_probs=75.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++++  +.+++.+.|. ++++||+||+++++||++|++.+.|.+.....+|.++|||++|+|+++|++++.|
T Consensus        11 mka~~~~~~~~~--~~~~e~~~P~-~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   87 (381)
T PLN02740         11 CKAAVAWGPGEP--LVMEEIRVDP-PQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDL   87 (381)
T ss_pred             eEEEEEecCCCC--cEEEEeeCCC-CCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcC
Confidence            899999876544  7888999998 9999999999999999999999988754334578899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        88 ~vGdrV~~~   96 (381)
T PLN02740         88 KAGDHVIPI   96 (381)
T ss_pred             CCCCEEEec
Confidence            999999864

>KOG0022|consensus

Probab=99.83  E-value=3.7e-20  Score=120.15  Aligned_cols=85  Identities=33%  Similarity=0.485  Sum_probs=77.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      +||++..+++.|  |..+++..++ |+.+||+||+.++++|++|.+.++|..+ ...+|.++|||++|+|+++|++|+.+
T Consensus         8 CKAAV~w~a~~P--L~IEei~V~p-Pka~EVRIKI~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESvGegV~~v   83 (375)
T KOG0022|consen    8 CKAAVAWEAGKP--LVIEEIEVAP-PKAHEVRIKILATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESVGEGVTTV   83 (375)
T ss_pred             EeEeeeccCCCC--eeEEEEEeCC-CCCceEEEEEEEEeeccccceeecCCCc-cccCceEecccceeEEEEecCCcccc
Confidence            588888888888  8999999888 9999999999999999999999998763 45789999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|+..
T Consensus        84 k~GD~Vipl   92 (375)
T KOG0022|consen   84 KPGDHVIPL   92 (375)
T ss_pred             CCCCEEeec
Confidence            999999865

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.82  E-value=7.9e-20  Score=103.67  Aligned_cols=63  Identities=49%  Similarity=0.638  Sum_probs=54.2

Q ss_pred             CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511          28 DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSK   90 (91)
Q Consensus        28 ~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~   90 (91)
                      |+||+||++++|||++|++.+.+.......+|.++|||++|+|+++|+++++|++||+|++.+
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~   63 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSP   63 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEES
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeec
Confidence            689999999999999999999986444558899999999999999999999999999998753

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.82  E-value=2.8e-19  Score=118.50  Aligned_cols=83  Identities=31%  Similarity=0.489  Sum_probs=75.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++.+  +++++.+.|. ++++||+||+.++++|++|++.+.|.++  ..+|.++|||++|+|+++|+++++|
T Consensus         2 mka~~~~~~~~~--~~~~~~~~p~-~~~~evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~   76 (358)
T TIGR03451         2 VRGVIARSKGAP--VELETIVVPD-PGPGEVIVDIQACGVCHTDLHYREGGIN--DEFPFLLGHEAAGVVEAVGEGVTDV   76 (358)
T ss_pred             cEEEEEccCCCC--CEEEEEECCC-CCCCeEEEEEEEEeecHHHHHHhcCCcc--ccCCcccccceEEEEEEeCCCCccc
Confidence            999999988766  7889999999 9999999999999999999999888643  2468899999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        77 ~~GdrV~~   84 (358)
T TIGR03451        77 APGDYVVL   84 (358)
T ss_pred             CCCCEEEE
Confidence            99999986

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.82  E-value=1.7e-19  Score=119.32  Aligned_cols=85  Identities=29%  Similarity=0.496  Sum_probs=73.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC--CCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~--~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++... +++ +++++.|.|+ ++++||+||+++++||++|++.+.|.++..+  .+|.++|||++|+|+++|++ +
T Consensus         1 mka~~~~~~-~~~-l~~~~~p~p~-~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~   76 (355)
T cd08230           1 MKAIAVKPG-KPG-VRVVDIPEPE-PTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S   76 (355)
T ss_pred             CceeEecCC-CCC-CeEEeCCCCC-CCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence            899999853 334 8999999999 9999999999999999999999998754322  35789999999999999999 9


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||||+..
T Consensus        77 ~~~vGdrV~~~   87 (355)
T cd08230          77 GLSPGDLVVPT   87 (355)
T ss_pred             CCCCCCEEEec
Confidence            99999999864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.81  E-value=3.7e-19  Score=116.33  Aligned_cols=88  Identities=34%  Similarity=0.381  Sum_probs=78.4

Q ss_pred             CeEEEEcccCCC---CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRWGEP---RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~~~~---~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      ||++++..++.+   +.+++.+.+.|. ++++||+||+.++++|+.|+....|.++....+|.++|+|++|+|+++|+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~-~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v   79 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPE-PGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGP   79 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCC-CCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCc
Confidence            899999988776   578889999999 9999999999999999999999888765434568899999999999999999


Q ss_pred             CC-CCCCCEEEee
Q psy3511          78 KH-FKVKNIVRSS   89 (91)
Q Consensus        78 ~~-~~~Gd~V~~~   89 (91)
                      ++ |++||+|++.
T Consensus        80 ~~~~~vGd~V~~~   92 (324)
T cd08291          80 LAQSLIGKRVAFL   92 (324)
T ss_pred             cccCCCCCEEEec
Confidence            86 9999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>KOG0024|consensus

Probab=99.80  E-value=1.5e-19  Score=117.66  Aligned_cols=87  Identities=33%  Similarity=0.353  Sum_probs=74.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCC--CCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~--~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      |+|+++.   ++.++++++.+.|+...|+||+|+++++|||.+|++.+.......  .+.|+++|||.+|+|.++|+.|+
T Consensus         5 ~~A~vl~---g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    5 NLALVLR---GKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cceeEEE---ccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            6778877   455588889999983499999999999999999999887665322  26899999999999999999999


Q ss_pred             CCCCCCEEEeeC
Q psy3511          79 HFKVKNIVRSSK   90 (91)
Q Consensus        79 ~~~~Gd~V~~~~   90 (91)
                      ++++||||..-+
T Consensus        82 ~LkVGDrVaiEp   93 (354)
T KOG0024|consen   82 HLKVGDRVAIEP   93 (354)
T ss_pred             ccccCCeEEecC
Confidence            999999998643

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.80  E-value=1.1e-18  Score=116.20  Aligned_cols=85  Identities=36%  Similarity=0.506  Sum_probs=75.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+...++.  +++++.+.|. ++++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         2 ~~a~~~~~~~~~--l~~~~~~~P~-~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~   77 (368)
T TIGR02818         2 SRAAVAWAAGQP--LKIEEVDVEM-PQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSV   77 (368)
T ss_pred             ceEEEEecCCCC--eEEEEecCCC-CCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccC
Confidence            889998876544  8889999999 99999999999999999999998886542 3578999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||.+.
T Consensus        78 ~~GdrV~~~   86 (368)
T TIGR02818        78 KVGDHVIPL   86 (368)
T ss_pred             CCCCEEEEc
Confidence            999999764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.80  E-value=8.3e-19  Score=116.60  Aligned_cols=85  Identities=29%  Similarity=0.414  Sum_probs=75.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++...+.+  +++++.+.|+ ++++||+||+.+++||++|++.+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus         3 ~ka~~~~~~~~~--~~l~~~~~p~-~~~~evlIkv~a~gi~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~   78 (369)
T cd08301           3 CKAAVAWEAGKP--LVIEEVEVAP-PQAMEVRIKILHTSLCHTDVYFWEAKGQ-TPLFPRILGHEAAGIVESVGEGVTDL   78 (369)
T ss_pred             cEEEEEecCCCC--cEEEEeeCCC-CCCCeEEEEEEEEeeCchhHHHhcCCCC-CCCCCcccccccceEEEEeCCCCCcc
Confidence            789998876554  8889999999 9999999999999999999998888654 23568899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        79 ~~GdrV~~~   87 (369)
T cd08301          79 KPGDHVLPV   87 (369)
T ss_pred             ccCCEEEEc
Confidence            999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.80  E-value=1.2e-18  Score=114.49  Aligned_cols=85  Identities=28%  Similarity=0.282  Sum_probs=73.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..   ++.+++++.+.|. ++++||+||+.++++|++|+..+.+.+......|.++|||++|+|+++|++++.|
T Consensus         1 mka~~~~~---~~~l~~~~~~~p~-~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   76 (339)
T cd08239           1 MRGAVFPG---DRTVELREFPVPV-PGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHF   76 (339)
T ss_pred             CeEEEEec---CCceEEEecCCCC-CCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccC
Confidence            89999974   4568999999999 9999999999999999999998876643222357899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|+..
T Consensus        77 ~~Gd~V~~~   85 (339)
T cd08239          77 RVGDRVMVY   85 (339)
T ss_pred             CCCCEEEEC
Confidence            999999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.79  E-value=1.6e-18  Score=113.11  Aligned_cols=83  Identities=24%  Similarity=0.326  Sum_probs=71.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecC-hhHHHHHhCCCCCC--CCCCcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGIN-PVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~-~~d~~~~~g~~~~~--~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      ||++++..   ++.+++++.+.|. ++++||+||+++++|| .+|++.+.|.++..  ..+|.++|||++|+|+++|+++
T Consensus         2 ~ka~~~~~---~~~l~~~e~~~p~-~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v   77 (308)
T TIGR01202         2 TQAIVLSG---PNQIELREVTLTP-PSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT   77 (308)
T ss_pred             ceEEEEeC---CCeEEEEEecCCC-CCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC
Confidence            68888873   5569999999999 9999999999999996 69998888875432  2568999999999999999998


Q ss_pred             CCCCCCCEEEe
Q psy3511          78 KHFKVKNIVRS   88 (91)
Q Consensus        78 ~~~~~Gd~V~~   88 (91)
                       .|++||||+.
T Consensus        78 -~~~vGdrV~~   87 (308)
T TIGR01202        78 -GFRPGDRVFV   87 (308)
T ss_pred             -CCCCCCEEEE
Confidence             5999999985

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.78  E-value=3.3e-18  Score=113.82  Aligned_cols=85  Identities=34%  Similarity=0.472  Sum_probs=74.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++...+++  +++++.+.|. ++++||+||++++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         3 ~~a~~~~~~~~~--~~~~~~~~P~-~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~   78 (368)
T cd08300           3 CKAAVAWEAGKP--LSIEEVEVAP-PKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSV   78 (368)
T ss_pred             ceEEEEecCCCC--cEEEEeecCC-CCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccC
Confidence            788888765544  8889999999 99999999999999999999998886542 3578899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        79 ~vGdrV~~~   87 (368)
T cd08300          79 KPGDHVIPL   87 (368)
T ss_pred             CCCCEEEEc
Confidence            999999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.78  E-value=3.4e-18  Score=113.70  Aligned_cols=86  Identities=23%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+...+..+.++..+.+.|. ++++||+||+.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~p~-~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~   88 (360)
T PLN02586         11 QKAFGWAARDPSGVLSPFHFSRRE-NGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKF   88 (360)
T ss_pred             hheeEEEecCCCCCceEEeecCCC-CCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCcc
Confidence            566666655556668888899998 99999999999999999999988876532 3568899999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|+.
T Consensus        89 ~vGdrV~~   96 (360)
T PLN02586         89 KEGDRVGV   96 (360)
T ss_pred             CCCCEEEE
Confidence            99999974

>PLN02827 Alcohol dehydrogenase-like

Probab=99.77  E-value=5.9e-18  Score=113.22  Aligned_cols=82  Identities=27%  Similarity=0.331  Sum_probs=72.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++  +.+++++.+.|. ++++||+||+.++++|++|++.+.+..    .+|.++|||++|+|+++|+++++|
T Consensus        13 mka~~~~~~~--~~~~~~e~~~P~-~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~   85 (378)
T PLN02827         13 CRAAVAWGAG--EALVMEEVEVSP-PQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEF   85 (378)
T ss_pred             eEEEEEecCC--CCceEEEeecCC-CCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCccc
Confidence            8899887543  448889999999 999999999999999999999887642    357899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        86 ~~GdrV~~~   94 (378)
T PLN02827         86 EKGDHVLTV   94 (378)
T ss_pred             CCCCEEEEe
Confidence            999999875

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.77  E-value=9.7e-18  Score=109.03  Aligned_cols=88  Identities=38%  Similarity=0.571  Sum_probs=77.4

Q ss_pred             CeEEEEcccCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++.+++.+ +.+++.+.+.|. +.++|++||+.++++|+.|+....|.++.....|.++|+|++|+|+++|++++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   79 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPT-PGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKG   79 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCC-CCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCC
Confidence            899999877665 458899999999 999999999999999999999888876433456788999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||+|++.
T Consensus        80 ~~~Gd~V~~~   89 (324)
T cd08292          80 LQVGQRVAVA   89 (324)
T ss_pred             CCCCCEEEec
Confidence            9999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.77  E-value=1e-17  Score=111.37  Aligned_cols=84  Identities=29%  Similarity=0.381  Sum_probs=74.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++...+++  +++++.+.|. ++++||+||+.++++|++|++.+.|.++  ..+|.++|+|++|+|+++|++++.|
T Consensus         3 ~ka~~~~~~~~~--~~~~~~~~p~-~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~   77 (365)
T cd08277           3 CKAAVAWEAGKP--LVIEEIEVAP-PKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNL   77 (365)
T ss_pred             cEEEEEccCCCC--cEEEEEECCC-CCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccC
Confidence            688888865543  8899999999 9999999999999999999999888654  3567899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        78 ~~GdrV~~~   86 (365)
T cd08277          78 KPGDKVIPL   86 (365)
T ss_pred             CCCCEEEEC
Confidence            999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG0025|consensus

Probab=99.76  E-value=4.5e-18  Score=109.55  Aligned_cols=88  Identities=39%  Similarity=0.573  Sum_probs=81.4

Q ss_pred             eEEEEcccCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           2 LAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         2 ~a~~~~~~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |++++..++.| +.+++.+.+.|+ ...++|+||..|+.|||+|+...+|.|+..+++|.+-|.|++|+|+++|+++++|
T Consensus        21 kalvY~~hgdP~kVlql~~~~~p~-~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgf   99 (354)
T KOG0025|consen   21 KALVYSEHGDPAKVLQLKNLELPA-VPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGF   99 (354)
T ss_pred             ceeeecccCCchhhheeecccCCC-CCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCcc
Confidence            78889999988 568999999998 7777899999999999999999999999989999999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||+|+...
T Consensus       100 k~Gd~VIp~~  109 (354)
T KOG0025|consen  100 KPGDWVIPLS  109 (354)
T ss_pred             CCCCeEeecC
Confidence            9999998653

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.75  E-value=2.4e-17  Score=108.50  Aligned_cols=84  Identities=26%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             EEEEcccCCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           3 AVQCKRWGEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         3 a~~~~~~~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ++.+..++.+  ..+++++.|.|. ++++||+||+.++++|++|++.+.|.++. ...|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~-~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~   78 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPR-PGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGF   78 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCC-CCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCccc
Confidence            3566667665  468999999999 99999999999999999999999886542 2346899999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|+.
T Consensus        79 ~~Gd~V~~   86 (329)
T TIGR02822        79 AVGDRVGI   86 (329)
T ss_pred             CCCCEEEE
Confidence            99999974

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.74  E-value=3e-17  Score=110.78  Aligned_cols=85  Identities=25%  Similarity=0.304  Sum_probs=69.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHH-hCCCC-C----CCCCCcccccceEEEEEEeC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR-SGQYP-N----LPDLPAILGTEVSGIVEEVG   74 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~-~----~~~~p~~~g~e~~G~V~~vG   74 (91)
                      ||++++..+   ..+++++.+.|. ++++||+||+.++|||++|++.+ .+... .    ...+|.++|||++|+|+++|
T Consensus         3 ~~a~~~~~~---~~l~~~e~p~P~-~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG   78 (410)
T cd08238           3 TKAWRMYGK---GDLRLEKFELPE-IADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVG   78 (410)
T ss_pred             cEEEEEEcC---CceEEEecCCCC-CCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeC
Confidence            677777643   358999999999 99999999999999999999876 44321 1    01367899999999999999


Q ss_pred             CCCC-CCCCCCEEEee
Q psy3511          75 QGVK-HFKVKNIVRSS   89 (91)
Q Consensus        75 ~~~~-~~~~Gd~V~~~   89 (91)
                      ++++ .|++||||++.
T Consensus        79 ~~v~~~~~vGdrV~~~   94 (410)
T cd08238          79 KKWQGKYKPGQRFVIQ   94 (410)
T ss_pred             CCccCCCCCCCEEEEc
Confidence            9998 69999999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.74  E-value=4.3e-17  Score=109.09  Aligned_cols=85  Identities=24%  Similarity=0.297  Sum_probs=72.7

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      ||+.+...+.++.++..+.+.|. ++++||+||+.+++||++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|+
T Consensus         6 ~a~~~~~~~~~~~l~~~~~~~p~-~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~   83 (375)
T PLN02178          6 KAFGWAANDESGVLSPFHFSRRE-NGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFK   83 (375)
T ss_pred             eeEEEEEccCCCCceEEeecCCC-CCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccC
Confidence            55666666666668888888888 99999999999999999999998886532 24678999999999999999999999


Q ss_pred             CCCEEEe
Q psy3511          82 VKNIVRS   88 (91)
Q Consensus        82 ~Gd~V~~   88 (91)
                      +||+|..
T Consensus        84 vGdrV~~   90 (375)
T PLN02178         84 EGDRVGV   90 (375)
T ss_pred             CCCEEEE
Confidence            9999974

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.74  E-value=3.4e-17  Score=108.73  Aligned_cols=84  Identities=25%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ++++++.++++.  ++.++.+.|+ ++++||+||+.++++|++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|
T Consensus        10 ~~~~~~~~~~~~--~~~~~~~~p~-~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~   85 (357)
T PLN02514         10 TTGWAARDPSGH--LSPYTYTLRK-TGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_pred             EEEEEEecCCCC--ceEEeecCCC-CCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCcccc
Confidence            467888877655  8889999999 99999999999999999999988876532 3467899999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|+.
T Consensus        86 ~~Gd~V~~   93 (357)
T PLN02514         86 TVGDIVGV   93 (357)
T ss_pred             cCCCEEEE
Confidence            99999974

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.73  E-value=3.3e-17  Score=108.25  Aligned_cols=81  Identities=22%  Similarity=0.210  Sum_probs=66.4

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC---CCCCCcccccceEEEEEEeCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN---LPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~---~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      |++++.   +++++++++.+.|.  +++||+||++++|||++|++.+.|.+..   ...+|.++|||++|+|+++|.+  
T Consensus         4 ~~~~~~---~~~~~~~~~~~~P~--~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           4 QVYRLV---RPKFFEVTYEEENL--REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             cceEEe---ccceEEEeecCCCC--CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            345554   45678999988873  8999999999999999999999886532   1257899999999999998764  


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||||+..
T Consensus        77 ~~~vGdrV~~~   87 (341)
T cd08237          77 TYKVGTKVVMV   87 (341)
T ss_pred             ccCCCCEEEEC
Confidence            79999999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.73  E-value=7.8e-17  Score=106.36  Aligned_cols=84  Identities=31%  Similarity=0.320  Sum_probs=71.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-CCC---------CCCCcccccceEEEE
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-PNL---------PDLPAILGTEVSGIV   70 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~~~---------~~~p~~~g~e~~G~V   70 (91)
                      ||++++.++   +.+.+++.+.|+ ++++||+||+.++++|+.|+..+.+.. ...         ...|.++|+|++|+|
T Consensus         1 mka~~~~~~---~~l~~~~~~~p~-~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V   76 (351)
T cd08233           1 MKAARYHGR---KDIRVEEVPEPP-VKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV   76 (351)
T ss_pred             CceEEEecC---CceEEEeccCCC-CCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence            899999853   458899999999 999999999999999999988765431 100         135789999999999


Q ss_pred             EEeCCCCCCCCCCCEEEe
Q psy3511          71 EEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        71 ~~vG~~~~~~~~Gd~V~~   88 (91)
                      +++|+++++|++||+|++
T Consensus        77 ~~vG~~v~~~~~Gd~V~~   94 (351)
T cd08233          77 VEVGSGVTGFKVGDRVVV   94 (351)
T ss_pred             EEeCCCCCCCCCCCEEEE
Confidence            999999999999999986

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.73  E-value=1.5e-16  Score=103.78  Aligned_cols=88  Identities=30%  Similarity=0.317  Sum_probs=78.8

Q ss_pred             CeEEEEcccCC--CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGE--PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~--~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||+|++..++.  ++.+++++.+.|. +.++|++|++.++++|+.|+....+.+.....+|.++|+|++|+|+.+|++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           2 FRKLVVHRLSPNFREATSIVDVPVPL-PGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             ceEEEeccCCCCcccCceEEecCCCC-CCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            89999999877  6779999999998 99999999999999999999988876644346778999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|++.
T Consensus        81 ~~~~Gd~V~~~   91 (329)
T cd08250          81 DFKVGDAVATM   91 (329)
T ss_pred             CCCCCCEEEEe
Confidence            99999999874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.72  E-value=1.1e-16  Score=104.93  Aligned_cols=88  Identities=40%  Similarity=0.515  Sum_probs=76.1

Q ss_pred             CeEEEEcccCCC-CceEEEEecCCCCCCC-CeEEEEEeEEecChhHHHHHhCCCCCCCC----CCcccccceEEEEEEeC
Q psy3511           1 MLAVQCKRWGEP-RVLELTTVDKPGPCLD-DEVLVKVMAAGINPVETYIRSGQYPNLPD----LPAILGTEVSGIVEEVG   74 (91)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~~-~ev~v~v~~~~l~~~d~~~~~g~~~~~~~----~p~~~g~e~~G~V~~vG   74 (91)
                      ||++.+.+++.+ +.+.+++.+.|. +.+ ++++||+.++++|+.|+....+..+....    .|.++|+|++|+|+++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG   79 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPP-PGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG   79 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCC-CCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence            999999988765 468999999998 777 99999999999999999988876543222    56789999999999999


Q ss_pred             CCCCCCCCCCEEEee
Q psy3511          75 QGVKHFKVKNIVRSS   89 (91)
Q Consensus        75 ~~~~~~~~Gd~V~~~   89 (91)
                      +++..|++||+|++.
T Consensus        80 ~~v~~~~~Gd~V~~~   94 (341)
T cd08290          80 SGVKSLKPGDWVIPL   94 (341)
T ss_pred             CCCCCCCCCCEEEec
Confidence            999999999999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10083 putative oxidoreductase; Provisional

Probab=99.72  E-value=1.1e-16  Score=104.94  Aligned_cols=83  Identities=29%  Similarity=0.462  Sum_probs=73.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..   ++.+++.+.+.|. ++++|++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++.|
T Consensus         1 m~a~~~~~---~~~~~~~~~~~p~-~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~   75 (339)
T PRK10083          1 MKSIVIEK---PNSLAIEERPIPQ-PAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAA   75 (339)
T ss_pred             CeEEEEec---CCeeEEEeccCCC-CCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccC
Confidence            89999985   4468899999999 99999999999999999999988876543 2568899999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|+.
T Consensus        76 ~~Gd~V~~   83 (339)
T PRK10083         76 RIGERVAV   83 (339)
T ss_pred             CCCCEEEE
Confidence            99999984

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.71  E-value=1.3e-16  Score=104.32  Aligned_cols=86  Identities=34%  Similarity=0.450  Sum_probs=75.7

Q ss_pred             eEEEEccc---CCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511           2 LAVQCKRW---GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         2 ~a~~~~~~---~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      |||++.++   ++++.++..+.|.|. ++++||+||+.++++|+.|+..+.+..+. ..+|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~   78 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPK-PGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVT   78 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCC-CCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCC
Confidence            67888887   778889999999999 99999999999999999999888775432 34577899999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|+++
T Consensus        79 ~~~~Gd~V~~~   89 (336)
T TIGR02817        79 LFKPGDEVWYA   89 (336)
T ss_pred             CCCCCCEEEEc
Confidence            99999999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.71  E-value=2.8e-16  Score=102.12  Aligned_cols=86  Identities=17%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..+++++.+++++.+.|. +.+++++|++.++++|+.|+....|.++....+|.++|+|++|+|+++  +++.|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~   77 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDD-LPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRF   77 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCC-CCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCC
Confidence            899999988877779999999999 999999999999999999999988876544456788999999999998  45689


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        78 ~~Gd~V~~~   86 (325)
T cd05280          78 REGDEVLVT   86 (325)
T ss_pred             CCCCEEEEc
Confidence            999999864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.71  E-value=2.5e-16  Score=103.85  Aligned_cols=83  Identities=29%  Similarity=0.354  Sum_probs=69.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..++   .+++.+.+.|. + .++|++||+.++++|++|+........  ..+|.++|+|++|+|+++|+++++
T Consensus         1 Mka~~~~~~~---~~~~~~~~~P~-~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   74 (347)
T PRK10309          1 MKSVVNDTDG---IVRVAESPIPE-IKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDD   74 (347)
T ss_pred             CceEEEeCCC---ceEEEECCCCC-CCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCC
Confidence            8999998643   48889999998 7 589999999999999999875422111  135688999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||+|++.
T Consensus        75 ~~vGd~V~~~   84 (347)
T PRK10309         75 LHPGDAVACV   84 (347)
T ss_pred             CCCCCEEEEC
Confidence            9999999864

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.70  E-value=3.6e-16  Score=102.65  Aligned_cols=84  Identities=36%  Similarity=0.518  Sum_probs=73.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.++++  .+++++.+.|. ++++|++||+.++++|+.|+..+.|..+. ..+|..+|+|++|+|+++|++++.|
T Consensus         1 m~a~~~~~~~~--~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~   76 (333)
T cd08296           1 YKAVQVTEPGG--PLELVERDVPL-PGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRW   76 (333)
T ss_pred             CeEEEEccCCC--CceEEeccCCC-CCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccC
Confidence            89999997644  48889999999 99999999999999999999988876532 3457789999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        77 ~~Gd~V~~   84 (333)
T cd08296          77 KVGDRVGV   84 (333)
T ss_pred             CCCCEEEe
Confidence            99999975

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.70  E-value=2.3e-16  Score=104.90  Aligned_cols=83  Identities=36%  Similarity=0.524  Sum_probs=73.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++.+  +++++.+.|. +.++|++||+.++++|+.|+....+.++  ...|.++|+|++|+|+++|+++..|
T Consensus         3 ~~a~~~~~~~~~--~~~~~~~~p~-~~~~~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~   77 (365)
T cd08278           3 TTAAVVREPGGP--FVLEDVELDD-PRPDEVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGVVEAVGSAVTGL   77 (365)
T ss_pred             cEEeeeccCCCc--ceEEEeecCC-CCCCeEEEEEEEeecCcccHHHhcCCCC--CCCCcccccceeEEEEEeCCCcccC
Confidence            899999876554  7888999998 9999999999999999999999888654  2457889999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        78 ~~Gd~V~~   85 (365)
T cd08278          78 KPGDHVVL   85 (365)
T ss_pred             CCCCEEEE
Confidence            99999985

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.70  E-value=2.7e-16  Score=104.13  Aligned_cols=84  Identities=35%  Similarity=0.404  Sum_probs=74.1

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC--
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH--   79 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~--   79 (91)
                      |++++.+++  +.+++++.+.|. ++++|++||+.++++|+.|+....|.++. ..+|.++|+|++|+|+++|++++.  
T Consensus         2 ka~~~~~~~--~~l~~~~~~~p~-~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   77 (361)
T cd08231           2 RAAVLTGPG--KPLEIREVPLPD-LEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDV   77 (361)
T ss_pred             eEEEEcCCC--CCCEEEeccCCC-CCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccc
Confidence            788888766  359999999999 99999999999999999999998886642 356789999999999999999986  


Q ss_pred             ----CCCCCEEEee
Q psy3511          80 ----FKVKNIVRSS   89 (91)
Q Consensus        80 ----~~~Gd~V~~~   89 (91)
                          |++||+|++.
T Consensus        78 ~~~~~~~Gd~V~~~   91 (361)
T cd08231          78 AGEPLKVGDRVTWS   91 (361)
T ss_pred             cCCccCCCCEEEEc
Confidence                9999999875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.70  E-value=7e-16  Score=100.44  Aligned_cols=88  Identities=33%  Similarity=0.355  Sum_probs=77.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||||++...+..+.+++.+.+.|. +.++|++|++.++++|+.|+....+.++.....|.++|+|++|+|+++|+++.+|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPE-PGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRF   79 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCC-CCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCC
Confidence            899999988766778998888887 8999999999999999999998887665444567889999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (336)
T cd08276          80 KVGDRVVPT   88 (336)
T ss_pred             CCCCEEEEe
Confidence            999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.70  E-value=3.9e-16  Score=102.35  Aligned_cols=86  Identities=35%  Similarity=0.451  Sum_probs=75.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..++.+  +.+.+.+.|. +.+++++|++.++++|+.|+....+.+..  ...+|.++|+|++|+|+++|+++.
T Consensus         1 ~ka~~~~~~~~~--~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~   77 (340)
T cd05284           1 MKAARLYEYGKP--LRLEDVPVPE-PGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD   77 (340)
T ss_pred             CeeeEeccCCCC--ceEEeCCCCC-CCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence            899999977644  8888889888 89999999999999999999988876642  335678999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|++.
T Consensus        78 ~~~~Gd~V~~~   88 (340)
T cd05284          78 GLKEGDPVVVH   88 (340)
T ss_pred             cCcCCCEEEEc
Confidence            99999999864

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.70  E-value=7.4e-16  Score=100.35  Aligned_cols=88  Identities=43%  Similarity=0.625  Sum_probs=76.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++....+.+.+.+.|. +.++|++||+.++++|+.|+....+.++.....+.++|+|++|+|+++|+++..|
T Consensus         2 m~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          2 MRAVTLKGFGGVDVLKIGESPKPA-PKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             cEEEEEEecCCCcceEEEeCCCCC-CCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            899999988877778888888887 8999999999999999999988877654333456789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|+++
T Consensus        81 ~~Gd~V~~~   89 (334)
T PTZ00354         81 KEGDRVMAL   89 (334)
T ss_pred             CCCCEEEEe
Confidence            999999875

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.70  E-value=4.4e-16  Score=102.80  Aligned_cols=84  Identities=29%  Similarity=0.322  Sum_probs=73.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++   .+++++.+.|. +.++|++||+.++++|++|++...+.+.. ...|.++|+|++|+|+++|+++++|
T Consensus         1 mka~~~~~~~---~~~l~~~~~p~-~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~   75 (351)
T cd08285           1 MKAFAMLGIG---KVGWIEKPIPV-CGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDF   75 (351)
T ss_pred             CceEEEccCC---ccEEEECCCCC-CCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCcc
Confidence            8999998654   37788888888 89999999999999999999888776532 3557899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        76 ~~Gd~V~~~   84 (351)
T cd08285          76 KPGDRVIVP   84 (351)
T ss_pred             CCCCEEEEc
Confidence            999999863

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.70  E-value=2.8e-16  Score=103.73  Aligned_cols=81  Identities=19%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHh-CCCCC-CCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~~-~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++.   ++..+++++.+.|  ++++||+||+.+++||++|++.+. +.+.. ...+|.++|||++|+|+++  +++
T Consensus         5 ~~~~~~~---~~~~~~~~~~~~p--~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          5 TQSCVVA---GKKDVAVTEQEIE--WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             ceEEEEe---cCCceEEEecCCC--CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            5677776   4555888888875  578999999999999999998875 33321 2357899999999999999  788


Q ss_pred             CCCCCCEEEe
Q psy3511          79 HFKVKNIVRS   88 (91)
Q Consensus        79 ~~~~Gd~V~~   88 (91)
                      .|++||+|+.
T Consensus        78 ~~~vGdrV~~   87 (343)
T PRK09880         78 GLKEGQTVAI   87 (343)
T ss_pred             cCCCCCEEEE
Confidence            9999999985

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.69  E-value=3.9e-16  Score=104.59  Aligned_cols=84  Identities=29%  Similarity=0.366  Sum_probs=73.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      |||+++..   ++.+++++.+.|. + .+++|+||+.++++|++|+....|.++. .++|.++|+|++|+|+++|++++.
T Consensus         1 m~a~~~~~---~~~~~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   75 (386)
T cd08283           1 MKALVWHG---KGDVRVEEVPDPK-IEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRN   75 (386)
T ss_pred             CeeEEEec---CCCceEEeCCCCC-CCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCC
Confidence            89999874   4568899999888 7 5999999999999999999999887654 346789999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||+|++.
T Consensus        76 ~~~Gd~V~~~   85 (386)
T cd08283          76 LKVGDRVVVP   85 (386)
T ss_pred             CCCCCEEEEc
Confidence            9999999874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.69  E-value=4.7e-16  Score=101.51  Aligned_cols=87  Identities=43%  Similarity=0.675  Sum_probs=77.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+.+++.+..+++++.+.|. ++++|++||+.++++|+.|+....+.++. ..+|..+|+|++|+|+.+|+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~   79 (327)
T PRK10754          2 AKRIEFHKHGGPEVLQAVEFTPAD-PAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHI   79 (327)
T ss_pred             ceEEEEeccCChhHeEEeeccCCC-CCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCC
Confidence            899999999988899999999998 99999999999999999999888776542 2356789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (327)
T PRK10754         80 KVGDRVVYA   88 (327)
T ss_pred             CCCCEEEEC
Confidence            999999753

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.69  E-value=4.7e-16  Score=102.55  Aligned_cols=86  Identities=36%  Similarity=0.433  Sum_probs=74.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-----------CCCCCcccccceEEE
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-----------LPDLPAILGTEVSGI   69 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-----------~~~~p~~~g~e~~G~   69 (91)
                      ||++.+...+.+  +++.+.+.|+ +.++||+|++.++++|+.|+....+.++.           ...+|.++|+|++|+
T Consensus         1 ~~a~~~~~~~~~--~~~~~~~~p~-~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   77 (350)
T cd08240           1 MKAAAVVEPGKP--LEEVEIDTPK-PPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE   77 (350)
T ss_pred             CeeEEeccCCCC--ceEEecCCCC-CCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence            899999876654  7888999999 99999999999999999999988775431           123467899999999


Q ss_pred             EEEeCCCCCCCCCCCEEEee
Q psy3511          70 VEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        70 V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      |+++|++++.|++||+|++.
T Consensus        78 V~~vG~~v~~~~~Gd~V~~~   97 (350)
T cd08240          78 VVAVGPDAADVKVGDKVLVY   97 (350)
T ss_pred             EEeeCCCCCCCCCCCEEEEC
Confidence            99999999999999999865

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.69  E-value=2.3e-16  Score=104.91  Aligned_cols=85  Identities=33%  Similarity=0.320  Sum_probs=67.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCc-ccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA-ILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~-~~g~e~~G~V~~vG~~~~~   79 (91)
                      |+++++......  ..+++.+.|. +.+++|+||+.++|||.+|++.+.+..+.. ..+. ++|||++|+|+++| .++.
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~-~~p~~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~evG-~~~~   75 (350)
T COG1063           1 MKAAVVYVGGGD--VRLEEPPPPI-PGPGDVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEVG-VVRG   75 (350)
T ss_pred             CceeEEEecCCc--cccccCCCCC-CCCCeEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEec-cccC
Confidence            778887764433  3366666665 789999999999999999999999875432 3333 89999999999999 7788


Q ss_pred             CCCCCEEEeeC
Q psy3511          80 FKVKNIVRSSK   90 (91)
Q Consensus        80 ~~~Gd~V~~~~   90 (91)
                      |++||||+..+
T Consensus        76 ~~~GdrVvv~~   86 (350)
T COG1063          76 FKVGDRVVVEP   86 (350)
T ss_pred             CCCCCEEEECC
Confidence            99999998754

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.69  E-value=4.5e-16  Score=102.30  Aligned_cols=88  Identities=31%  Similarity=0.412  Sum_probs=74.0

Q ss_pred             CeEEEEcccCCCCceEEEE-ecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-------------------CCCCCc
Q psy3511           1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-------------------LPDLPA   60 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~-~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-------------------~~~~p~   60 (91)
                      ||++.+..++.++.+.+.+ .+.|. +.+++++||+.++++|++|+....|.++.                   ...+|.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   79 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPT-PAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPR   79 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCC-CCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCc
Confidence            8999998777666677765 46777 89999999999999999999988775431                   234678


Q ss_pred             ccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          61 ILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        61 ~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      ++|||++|+|+++|++++.|++||+|++.
T Consensus        80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  108 (350)
T cd08274          80 IQGADIVGRVVAVGEGVDTARIGERVLVD  108 (350)
T ss_pred             ccCCcceEEEEEeCCCCCCCCCCCEEEEe
Confidence            89999999999999999999999999873

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.69  E-value=8e-16  Score=100.28  Aligned_cols=87  Identities=36%  Similarity=0.573  Sum_probs=77.9

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |+|.+.+.+.++.+++++.+.|. +.+++++|++.++++|+.|+....+.++....+|..+|+|++|+|+.+|+++..|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPE-PAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCC-CCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            78999988888889999999998 89999999999999999999988876543335677899999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||+|.+.
T Consensus        81 ~Gd~V~~~   88 (331)
T cd08273          81 VGDRVAAL   88 (331)
T ss_pred             CCCEEEEe
Confidence            99999975

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.69  E-value=6.2e-16  Score=101.51  Aligned_cols=86  Identities=35%  Similarity=0.478  Sum_probs=75.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++ ...+++.+.+.|. +.++|++|++.++++|+.|+....+.++.....+..+|+|++|+|+++|++++.|
T Consensus         1 m~a~~~~~~~-~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~   78 (341)
T cd08297           1 MKAAVVEEFG-EKPYEVKDVPVPE-PGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGL   78 (341)
T ss_pred             CceEEeeccC-CCCceEEEeeCCC-CCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCC
Confidence            8999998776 5679999999998 9999999999999999999988877664333456689999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        79 ~~Gd~V~~   86 (341)
T cd08297          79 KVGDRVGV   86 (341)
T ss_pred             CCCCEEEE
Confidence            99999986

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.69  E-value=6.7e-16  Score=99.57  Aligned_cols=88  Identities=45%  Similarity=0.771  Sum_probs=77.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++...+.+..+.+.+.+.|. +.+++++|++.++++|+.|+....+.+......|.++|+|++|+|+++|+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPT-PGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGL   79 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCC-CCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCC
Confidence            899999887766778889999998 9999999999999999999988877654444677899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~v~~~   88 (325)
T cd08253          80 KVGDRVWLT   88 (325)
T ss_pred             CCCCEEEEe
Confidence            999999875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.68  E-value=9.2e-16  Score=99.76  Aligned_cols=88  Identities=39%  Similarity=0.512  Sum_probs=76.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+.+.+..+++.+.+.|. +.+++++|++.++++|+.|+....|.+......|..+|+|++|+|+.+|+++..|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPE-PGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNV   79 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCC-CCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCC
Confidence            899999877777778888888887 8999999999999999999998877654323557789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (342)
T cd08266          80 KPGQRVVIY   88 (342)
T ss_pred             CCCCEEEEc
Confidence            999999875

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.68  E-value=1.2e-15  Score=98.26  Aligned_cols=88  Identities=44%  Similarity=0.616  Sum_probs=77.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+.+.+..+++.+.+.|. +.+++++||+.++++|+.|+....+.+.....+|.++|+|++|+|+++|+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~   79 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPA-PGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGW   79 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCC-CCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCC
Confidence            899999987777778888888887 8999999999999999999988877654334567889999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (323)
T cd05276          80 KVGDRVCAL   88 (323)
T ss_pred             CCCCEEEEe
Confidence            999999875

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.68  E-value=6.6e-16  Score=102.53  Aligned_cols=84  Identities=39%  Similarity=0.543  Sum_probs=74.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+.+.+++.+  +++++.+.|. +.+++++|++.++++|+.|+....+.++  ..+|.++|+|++|+|+++|++++.|
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~vG~~v~~~   75 (363)
T cd08279           1 MRAAVLHEVGKP--LEIEEVELDD-PGPGEVLVRIAAAGLCHSDLHVVTGDLP--APLPAVLGHEGAGVVEEVGPGVTGV   75 (363)
T ss_pred             CeEEEEecCCCC--ceEEEeeCCC-CCCCeEEEEEEEeecCcHHHHHhcCCCC--CCCCccccccceEEEEEeCCCcccc
Confidence            899999987754  8889999999 9999999999999999999998887654  2456789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        76 ~~Gd~V~~~   84 (363)
T cd08279          76 KPGDHVVLS   84 (363)
T ss_pred             CCCCEEEEC
Confidence            999999873

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.68  E-value=1.2e-15  Score=98.59  Aligned_cols=88  Identities=44%  Similarity=0.719  Sum_probs=77.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.++.+.+++.+.|. +.+++++|++.++++|+.|+....+.+......+.++|+|++|+|+.+|+++..|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQ-PGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRF   79 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCC-CCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCC
Confidence            899999988877778888888887 8999999999999999999988877654333457789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (326)
T cd08272          80 RVGDEVYGC   88 (326)
T ss_pred             CCCCEEEEc
Confidence            999999975

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.68  E-value=9.5e-16  Score=102.28  Aligned_cols=82  Identities=26%  Similarity=0.310  Sum_probs=72.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..+   ..+++++.+.|. + .++|++||+.++++|+.|+..+.|.++  ..+|.++|+|++|+|+++|+++..
T Consensus         1 m~~~~~~~~---~~~~~~~~~~p~-~~~~~evlv~v~a~~i~~~D~~~~~g~~~--~~~p~~~g~e~~G~V~~vG~~v~~   74 (375)
T cd08282           1 MKAVVYGGP---GNVAVEDVPDPK-IEHPTDAIVRITTTAICGSDLHMYRGRTG--AEPGLVLGHEAMGEVEEVGSAVES   74 (375)
T ss_pred             CceEEEecC---CceeEEeCCCCC-CCCCCeEEEEEEEEeeCHHHHHHHcCCCC--CCCCceeccccEEEEEEeCCCCCc
Confidence            899998744   458899999988 6 799999999999999999999888654  245789999999999999999999


Q ss_pred             CCCCCEEEe
Q psy3511          80 FKVKNIVRS   88 (91)
Q Consensus        80 ~~~Gd~V~~   88 (91)
                      |++||+|++
T Consensus        75 ~~~Gd~V~~   83 (375)
T cd08282          75 LKVGDRVVV   83 (375)
T ss_pred             CCCCCEEEE
Confidence            999999986

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.68  E-value=8.8e-16  Score=100.83  Aligned_cols=83  Identities=30%  Similarity=0.318  Sum_probs=73.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++.+..+   +.+.+.+.+.|. + .+++++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++.
T Consensus         1 ~ka~~~~~~---~~~~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   75 (347)
T cd05278           1 MKALVYLGP---GKIGLEEVPDPK-IQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKR   75 (347)
T ss_pred             CceEEEecC---CceEEEEcCCCC-CCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccc
Confidence            899998854   448888999888 8 8999999999999999999988887653 456789999999999999999999


Q ss_pred             CCCCCEEEe
Q psy3511          80 FKVKNIVRS   88 (91)
Q Consensus        80 ~~~Gd~V~~   88 (91)
                      |++||+|++
T Consensus        76 ~~~Gd~V~~   84 (347)
T cd05278          76 LKPGDRVSV   84 (347)
T ss_pred             cCCCCEEEe
Confidence            999999986

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.68  E-value=1.4e-15  Score=98.80  Aligned_cols=88  Identities=36%  Similarity=0.514  Sum_probs=75.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++.+.+++.+..+++.+.+.|. +.+++++|++.++++|+.|+....|..+.  ....|.++|+|++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~   79 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPV-PGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD   79 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCC-CCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence            899999887777778888888777 89999999999999999999988776432  234567899999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|++.
T Consensus        80 ~~~~Gd~V~~~   90 (324)
T cd08244          80 PAWLGRRVVAH   90 (324)
T ss_pred             CCCCCCEEEEc
Confidence            99999999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.68  E-value=8.5e-16  Score=101.03  Aligned_cols=86  Identities=30%  Similarity=0.293  Sum_probs=73.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-C-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~-~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++.+.+  +.+++.+.+.|. ++++|++||+.++++|+.|+.++.+.. . ....+|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~--~~~~~~~~~~p~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~   77 (341)
T PRK05396          1 MKALVKLKAE--PGLWLTDVPVPE-PGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT   77 (341)
T ss_pred             CceEEEecCC--CceEEEECCCCC-CCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence            8999998755  459999999999 999999999999999999998776532 1 1124567899999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|++.
T Consensus        78 ~~~~Gd~V~~~   88 (341)
T PRK05396         78 GFKVGDRVSGE   88 (341)
T ss_pred             cCCCCCEEEEC
Confidence            99999999864

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.67  E-value=8.3e-16  Score=102.66  Aligned_cols=84  Identities=30%  Similarity=0.405  Sum_probs=72.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++...++.  +++++.|.|. +.++||+||+.++++|++|+....|.+.  ..+|.++|+|++|+|+++|++++.|
T Consensus         8 ~~a~~~~~~~~~--~~l~~~p~p~-~~~~~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~   82 (373)
T cd08299           8 CKAAVLWEPKKP--FSIEEIEVAP-PKAHEVRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESVGEGVTTV   82 (373)
T ss_pred             eEEEEEecCCCC--cEEEEeecCC-CCCCEEEEEEEEEEcCcccHHHhcCCCC--CCCCccccccceEEEEEeCCCCccC
Confidence            677777765444  8889999999 9999999999999999999999888652  2467899999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        83 ~~Gd~V~~~   91 (373)
T cd08299          83 KPGDKVIPL   91 (373)
T ss_pred             CCCCEEEEC
Confidence            999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.67  E-value=9.3e-16  Score=101.20  Aligned_cols=84  Identities=35%  Similarity=0.351  Sum_probs=71.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--------CCCCCcccccceEEEEEE
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--------LPDLPAILGTEVSGIVEE   72 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--------~~~~p~~~g~e~~G~V~~   72 (91)
                      ||++++..+   ..+++++.+.|+ +.+++|+||+.++++|+.|++.+.|.+..        ...+|.++|+|++|+|++
T Consensus         1 mka~~~~~~---~~~~~~~~~~p~-~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~   76 (350)
T cd08256           1 MRAVVCHGP---QDYRLEEVPVPR-PGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE   76 (350)
T ss_pred             CeeEEEecC---CceEEEECCCCC-CCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence            899999744   458899999999 99999999999999999999988775311        013567899999999999


Q ss_pred             eCCCCC--CCCCCCEEEe
Q psy3511          73 VGQGVK--HFKVKNIVRS   88 (91)
Q Consensus        73 vG~~~~--~~~~Gd~V~~   88 (91)
                      +|++++  +|++||+|++
T Consensus        77 vG~~v~~~~~~~Gd~V~~   94 (350)
T cd08256          77 LGEGAEERGVKVGDRVIS   94 (350)
T ss_pred             eCCCcccCCCCCCCEEEE
Confidence            999998  8999999986

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.67  E-value=1.5e-15  Score=98.90  Aligned_cols=85  Identities=36%  Similarity=0.488  Sum_probs=74.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..+  ++.+.+++.+.|. +.+++++|+++++++|+.|+....+.++. ...|.++|+|++|+|+.+|++++.|
T Consensus         1 m~a~~~~~~--~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~   76 (332)
T cd08259           1 MKAAILHKP--NKPLQIEEVPDPE-PGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERF   76 (332)
T ss_pred             CeEEEEecC--CCceEEEEccCCC-CCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccC
Confidence            899999863  3458889999998 99999999999999999999988876543 3457789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        77 ~~Gd~V~~~   85 (332)
T cd08259          77 KPGDRVILY   85 (332)
T ss_pred             CCCCEEEEC
Confidence            999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.67  E-value=1.3e-15  Score=99.53  Aligned_cols=82  Identities=37%  Similarity=0.461  Sum_probs=73.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++   .+.+.+.+.|+ ++++||+||+.++++|+.|+....|.++.  .+|.++|+|++|+|+.+|++++.|
T Consensus         1 ~~a~~~~~~~---~~~~~~~~~~~-l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~   74 (334)
T cd08234           1 MKALVYEGPG---ELEVEEVPVPE-PGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGF   74 (334)
T ss_pred             CeeEEecCCC---ceEEEeccCCC-CCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCC
Confidence            8999998654   58889999999 99999999999999999999988887643  367789999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        75 ~~Gd~V~~   82 (334)
T cd08234          75 KVGDRVAV   82 (334)
T ss_pred             CCCCEEEE
Confidence            99999986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.67  E-value=1.8e-15  Score=98.49  Aligned_cols=86  Identities=20%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..+++++.+++++.+.|. ++++|++|++.++++|+.|+....+.+.....+|..+|+|++|+|++  ++++.|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~   77 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESD-LPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRF   77 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCC-CCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCC
Confidence            899999988887789999999999 99999999999999999999888776432234567889999999999  777789


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        78 ~~Gd~V~~~   86 (324)
T cd08288          78 KPGDRVVLT   86 (324)
T ss_pred             CCCCEEEEC
Confidence            999999874

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.67  E-value=8.9e-16  Score=101.53  Aligned_cols=81  Identities=26%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             EEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy3511           4 VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVK   83 (91)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~G   83 (91)
                      +++.+++.+  +++++.+.|. ++++||+||+.++++|++|+....+.+.....+|.++|||++|+|+++|++++.+ +|
T Consensus         2 ~~~~~~g~~--~~~~~~p~P~-~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~G   77 (349)
T TIGR03201         2 WMMTEPGKP--MVKTRVEIPE-LGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IG   77 (349)
T ss_pred             ceEecCCCC--ceEEeccCCC-CCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CC
Confidence            445555543  8888999999 9999999999999999999987744432223567899999999999999999887 99


Q ss_pred             CEEEe
Q psy3511          84 NIVRS   88 (91)
Q Consensus        84 d~V~~   88 (91)
                      |+|+.
T Consensus        78 drV~~   82 (349)
T TIGR03201        78 KAVIV   82 (349)
T ss_pred             CEEEE
Confidence            99986

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.66  E-value=2.3e-15  Score=97.23  Aligned_cols=82  Identities=26%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+.+ +..+++.+.+.|. +.++|++||+.++++|+.|+......     ..+.++|+|++|+|+++|+++..|
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~-~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~   73 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQ-PAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGP   73 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCC-CCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCC
Confidence            8999998765 7778888999999 99999999999999999999876521     225689999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        74 ~~Gd~V~~~   82 (305)
T cd08270          74 AVGARVVGL   82 (305)
T ss_pred             CCCCEEEEe
Confidence            999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.66  E-value=5e-16  Score=102.27  Aligned_cols=85  Identities=39%  Similarity=0.491  Sum_probs=74.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..++ +..+++++.+.|. ++++|++|++.++++|+.|+....+.+  ....+.++|+|++|+|+++|++++.|
T Consensus         1 m~a~~~~~~~-~~~~~~~~~~~p~-~~~~ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~~   76 (339)
T cd08249           1 QKAAVLTGPG-GGLLVVVDVPVPK-PGPDEVLVKVKAVALNPVDWKHQDYGF--IPSYPAILGCDFAGTVVEVGSGVTRF   76 (339)
T ss_pred             CceEEeccCC-CCcccccCCCCCC-CCCCEEEEEEEEEEcCchheeeeeccc--ccCCCceeeeeeeEEEEEeCCCcCcC
Confidence            8999999877 7779999999999 999999999999999999988765543  12346789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|+++
T Consensus        77 ~~Gd~V~~~   85 (339)
T cd08249          77 KVGDRVAGF   85 (339)
T ss_pred             CCCCEEEEE
Confidence            999999976

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.66  E-value=1.7e-15  Score=98.88  Aligned_cols=86  Identities=41%  Similarity=0.499  Sum_probs=76.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+..++++. +.+.+.+.|. +++++|+|++.++++|+.|+....+.++.....|.++|+|++|+|+.+|+++..|
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~   78 (338)
T cd08254           1 MKAWRFHKGSKGL-LVLEEVPVPE-PGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNF   78 (338)
T ss_pred             CeeEEEecCCCCc-eEEeccCCCC-CCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccC
Confidence            8999999887776 7888888888 8999999999999999999999888765334567789999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        79 ~~Gd~V~~   86 (338)
T cd08254          79 KVGDRVAV   86 (338)
T ss_pred             CCCCEEEE
Confidence            99999986

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.66  E-value=1.9e-15  Score=98.99  Aligned_cols=83  Identities=28%  Similarity=0.309  Sum_probs=71.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++..  ..+++.+.|. +.++|++||+.++++|+.|+....+.++.  ..|.++|+|++|+|+++|++++.|
T Consensus         1 mka~~~~~~~~~--~~~~~~~~p~-~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~   75 (338)
T PRK09422          1 MKAAVVNKDHTG--DVVVEKTLRP-LKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSL   75 (338)
T ss_pred             CeEEEecCCCCC--ceEEEecCCC-CCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccC
Confidence            899999976654  2278889998 99999999999999999999888776532  236789999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        76 ~~Gd~V~~   83 (338)
T PRK09422         76 KVGDRVSI   83 (338)
T ss_pred             CCCCEEEE
Confidence            99999985

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.66  E-value=1.7e-15  Score=99.70  Aligned_cols=84  Identities=32%  Similarity=0.387  Sum_probs=72.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++.+++   .+++++.+.|+ + .++||+|++.++++|+.|+....|.++. ..+|.++|+|++|+|+++|++++.
T Consensus         1 m~a~~~~~~~---~~~~~~~~~p~-~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~   75 (345)
T cd08286           1 MKALVYHGPG---KISWEDRPKPT-IQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTN   75 (345)
T ss_pred             CceEEEecCC---ceeEEecCCCC-CCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCccc
Confidence            8999998654   48888999888 5 7999999999999999999998887643 244788999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||+|++.
T Consensus        76 ~~~Gd~V~~~   85 (345)
T cd08286          76 FKVGDRVLIS   85 (345)
T ss_pred             cCCCCEEEEC
Confidence            9999999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=2.7e-15  Score=97.72  Aligned_cols=86  Identities=38%  Similarity=0.464  Sum_probs=74.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||+|+..+. .+..+++++.+.|. +.+++++|++.++++|+.|++...+.+. ....|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~~~p~-~~~~~v~V~v~~~~l~~~d~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~   77 (306)
T cd08258           1 MKALVKTGP-GPGNVELREVPEPE-PGPGEVLIKVAAAGICGSDLHIYKGDYD-PVETPVVLGHEFSGTIVEVGPDVEGW   77 (306)
T ss_pred             CeeEEEecC-CCCceEEeecCCCC-CCCCeEEEEEEEEEechhhHHHHcCCCC-cCCCCeeeccceEEEEEEECCCcCcC
Confidence            899998763 34569999999999 9999999999999999999988877652 12446789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        78 ~~Gd~V~~~   86 (306)
T cd08258          78 KVGDRVVSE   86 (306)
T ss_pred             CCCCEEEEc
Confidence            999999874

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.7e-15  Score=100.67  Aligned_cols=83  Identities=31%  Similarity=0.460  Sum_probs=73.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC-
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~-   79 (91)
                      ||+|++..++.+  +.+.+.+.|. +.++||+|++.++++|+.|+....+.++.  .+|.++|+|++|+|+++|+++.. 
T Consensus         1 ~~a~~~~~~~~~--~~~~~~~~~~-~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~   75 (367)
T cd08263           1 MKAAVLKGPNPP--LTIEEIPVPR-PKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENP   75 (367)
T ss_pred             CeeEEEecCCCC--cEEEEeeCCC-CCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCC
Confidence            899999877543  7888889888 89999999999999999999988876643  56788999999999999999988 


Q ss_pred             --CCCCCEEEe
Q psy3511          80 --FKVKNIVRS   88 (91)
Q Consensus        80 --~~~Gd~V~~   88 (91)
                        |++||+|++
T Consensus        76 ~~~~~Gd~V~~   86 (367)
T cd08263          76 YGLSVGDRVVG   86 (367)
T ss_pred             CcCCCCCEEEE
Confidence              999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.66  E-value=1.5e-15  Score=99.81  Aligned_cols=88  Identities=34%  Similarity=0.533  Sum_probs=74.4

Q ss_pred             CeEEEEcccCCCC-ceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCC--------------CCCCCCccccc
Q psy3511           1 MLAVQCKRWGEPR-VLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYP--------------NLPDLPAILGT   64 (91)
Q Consensus         1 m~a~~~~~~~~~~-~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~--------------~~~~~p~~~g~   64 (91)
                      ||++++.+++.++ .+++++.+.|. + .++||+|++.++++|+.|+....+...              .....|.++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~   79 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPV-IRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR   79 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCC-CCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence            8999998887754 47888989888 7 599999999999999999998876421              02355789999


Q ss_pred             ceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          65 EVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        65 e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      |++|+|+++|++++.|++||+|++.
T Consensus        80 e~~G~v~~vG~~v~~~~~Gd~V~~~  104 (350)
T cd08248          80 DCSGVVVDIGSGVKSFEIGDEVWGA  104 (350)
T ss_pred             eeEEEEEecCCCcccCCCCCEEEEe
Confidence            9999999999999999999999874

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.66  E-value=1.4e-15  Score=99.91  Aligned_cols=82  Identities=27%  Similarity=0.394  Sum_probs=71.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||+++++.   +..+++.+.+.|. + +++|++||+.++++|++|+....|.++.  ..|.++|+|++|+|+++|+++..
T Consensus         1 m~~~~~~~---~~~~~~~~~~~p~-~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~   74 (345)
T cd08287           1 MRATVIHG---PGDIRVEEVPDPV-IEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTS   74 (345)
T ss_pred             CceeEEec---CCceeEEeCCCCC-CCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCc
Confidence            89999984   3358899999988 5 8999999999999999999888776542  34678999999999999999999


Q ss_pred             CCCCCEEEe
Q psy3511          80 FKVKNIVRS   88 (91)
Q Consensus        80 ~~~Gd~V~~   88 (91)
                      |++||+|++
T Consensus        75 ~~~Gd~V~~   83 (345)
T cd08287          75 VKPGDFVIA   83 (345)
T ss_pred             cCCCCEEEe
Confidence            999999986

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.65  E-value=1.4e-15  Score=100.00  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             CCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCC--CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511          12 PRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQY--PNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        12 ~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~--~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~   88 (91)
                      ++.+++.+.+.|. + ++|||+||++++|||+.|+.......  .+...+|.++|+|++|+|+++|++++.|++||+|++
T Consensus        20 ~~~~~~~~~~~p~-~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   98 (345)
T cd08293          20 AENFRVEECTLPD-ELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS   98 (345)
T ss_pred             ccceEEEeccCCC-CCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence            3678999999998 6 49999999999999999864332111  112346778999999999999999999999999986


Q ss_pred             e
Q psy3511          89 S   89 (91)
Q Consensus        89 ~   89 (91)
                      +
T Consensus        99 ~   99 (345)
T cd08293          99 F   99 (345)
T ss_pred             c
Confidence            4

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.65  E-value=3.3e-15  Score=98.30  Aligned_cols=84  Identities=35%  Similarity=0.523  Sum_probs=74.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||||++.+++.+  +.+++.+.|. +.+++++|++.++++|+.|+....+.++. ..+|..+|+|++|+|+++|++++.|
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~   76 (345)
T cd08260           1 MRAAVYEEFGEP--LEIREVPDPE-PPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRW   76 (345)
T ss_pred             CeeEEEecCCCC--cEEEEccCCC-CCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccC
Confidence            999999877765  8888999998 89999999999999999999988886542 3457889999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        77 ~~Gd~V~~   84 (345)
T cd08260          77 RVGDRVTV   84 (345)
T ss_pred             CCCCEEEE
Confidence            99999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.65  E-value=3.5e-15  Score=97.66  Aligned_cols=85  Identities=39%  Similarity=0.473  Sum_probs=74.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++.  .+++++.+.|. +.++|++|++.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~--~~~~~~~~~~~-~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~   76 (334)
T PRK13771          1 MKAVILPGFKQ--GYRIEEVPDPK-PGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGF   76 (334)
T ss_pred             CeeEEEcCCCC--CcEEEeCCCCC-CCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccC
Confidence            89999987765  38899999999 99999999999999999999888776542 3456789999999999999999889


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        77 ~~G~~V~~~   85 (334)
T PRK13771         77 KPGDRVASL   85 (334)
T ss_pred             CCCCEEEEC
Confidence            999999875

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.65  E-value=3e-15  Score=98.29  Aligned_cols=84  Identities=36%  Similarity=0.359  Sum_probs=73.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||+|.+++++   .+.+++.+.|+ +.+++++||+.++++|+.|+....+.+. ....|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~~~-l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~   75 (343)
T cd08235           1 MKAAVLHGPN---DVRLEEVPVPE-PGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGF   75 (343)
T ss_pred             CeEEEEecCC---ceEEEEccCCC-CCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCC
Confidence            8999998654   48888999998 8999999999999999999998877653 23446789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        76 ~~Gd~V~~~   84 (343)
T cd08235          76 KVGDRVFVA   84 (343)
T ss_pred             CCCCEEEEc
Confidence            999999974

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.65  E-value=4.5e-15  Score=96.82  Aligned_cols=85  Identities=34%  Similarity=0.460  Sum_probs=72.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++ .+.+++.+.+.+. ++++|++|++.++++|+.|+....+..  ...+|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ev~v~v~~~~i~~~d~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~~   76 (325)
T cd08264           1 MKALVFEKSG-IENLKVEDVKDPK-PGPGEVLIRVKMAGVNPVDYNVINAVK--VKPMPHIPGAEFAGVVEEVGDHVKGV   76 (325)
T ss_pred             CeeEEeccCC-CCceEEEeccCCC-CCCCeEEEEEEEEEechHHHHHHhCCC--CCCCCeecccceeEEEEEECCCCCCC
Confidence            8999998766 6678888888887 999999999999999999998876421  12346789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        77 ~~Gd~V~~~   85 (325)
T cd08264          77 KKGDRVVVY   85 (325)
T ss_pred             CCCCEEEEC
Confidence            999999864

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.65  E-value=2.7e-15  Score=98.50  Aligned_cols=84  Identities=29%  Similarity=0.270  Sum_probs=71.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC----------CCCCCCcccccceEEEE
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP----------NLPDLPAILGTEVSGIV   70 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~----------~~~~~p~~~g~e~~G~V   70 (91)
                      ||++++...    .+++++.+.|+ +++++|+|++.++++|+.|++...|...          .....|.++|+|++|+|
T Consensus         1 m~a~~~~~~----~~~~~~~~~p~-~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   75 (341)
T cd08262           1 MRAAVFRDG----PLVVRDVPDPE-PGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV   75 (341)
T ss_pred             CceEEEeCC----ceEEEecCCCC-CCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence            899998743    58889999999 9999999999999999999998877321          01235678999999999


Q ss_pred             EEeCCCCCC-CCCCCEEEee
Q psy3511          71 EEVGQGVKH-FKVKNIVRSS   89 (91)
Q Consensus        71 ~~vG~~~~~-~~~Gd~V~~~   89 (91)
                      +++|++++. |++||+|++.
T Consensus        76 ~~vG~~v~~~~~~Gd~V~~~   95 (341)
T cd08262          76 VDYGPGTERKLKVGTRVTSL   95 (341)
T ss_pred             EEeCCCCcCCCCCCCEEEec
Confidence            999999987 9999999975

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.64  E-value=4.8e-15  Score=96.85  Aligned_cols=86  Identities=40%  Similarity=0.517  Sum_probs=74.5

Q ss_pred             CeEEEEcccCCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++.+.+.+  +.+++.+.+.|. +.++||+||+.++++|+.|+....|.++. ..+|.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~   78 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPE-PGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVT   78 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCC-CCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCC
Confidence            899999877643  458888888888 89999999999999999999988876543 35578999999999999999999


Q ss_pred             CCCCCCEEEe
Q psy3511          79 HFKVKNIVRS   88 (91)
Q Consensus        79 ~~~~Gd~V~~   88 (91)
                      .|++||+|++
T Consensus        79 ~~~~Gd~V~~   88 (329)
T cd08298          79 RFSVGDRVGV   88 (329)
T ss_pred             CCcCCCEEEE
Confidence            9999999975

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.64  E-value=4.6e-15  Score=96.98  Aligned_cols=87  Identities=37%  Similarity=0.471  Sum_probs=75.4

Q ss_pred             CeEEEEcccCCCC---ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRWGEPR---VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~~~~~---~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      ||++++.+++.++   .+.+++.+.|. +.+++++|++.++++|+.|+....+.++ ....+.++|+|++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v   78 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPV-PGGRDLLVRVEAVSVNPVDTKVRAGGAP-VPGQPKILGWDASGVVEAVGSEV   78 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCC-CCCCEEEEEEEEEEcCHHHHHHHcCCCC-CCCCCcccccceEEEEEEcCCCC
Confidence            8999999887765   58888888888 8999999999999999999988777554 22456789999999999999999


Q ss_pred             CCCCCCCEEEee
Q psy3511          78 KHFKVKNIVRSS   89 (91)
Q Consensus        78 ~~~~~Gd~V~~~   89 (91)
                      ..|++||+|++.
T Consensus        79 ~~~~~Gd~V~~~   90 (336)
T cd08252          79 TLFKVGDEVYYA   90 (336)
T ss_pred             CCCCCCCEEEEc
Confidence            999999999875

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.64  E-value=5e-15  Score=96.45  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      ||+++...++++.+++++.|.|. +.+++|+||+.++++|+.|+....|.+......|..+|+|++|+|+.  .++..|+
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   77 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSD-LPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFR   77 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCC-CCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCC
Confidence            68888888888889999999999 99999999999999999999988886533234578899999999998  5667899


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||+|++.
T Consensus        78 ~Gd~V~~~   85 (323)
T TIGR02823        78 EGDEVIVT   85 (323)
T ss_pred             CCCEEEEc
Confidence            99999865

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.64  E-value=3.9e-15  Score=97.80  Aligned_cols=83  Identities=37%  Similarity=0.398  Sum_probs=72.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++++++   .+.+++.+.|+ ++++|++||+.++++|+.|+..+.+.+.  ...|.++|+|++|+|+++|+++..|
T Consensus         1 ~~a~~~~~~~---~l~~~~~~~~~-l~~~~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~g~~v~~~   74 (343)
T cd08236           1 MKALVLTGPG---DLRYEDIPKPE-PGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGSGVDDL   74 (343)
T ss_pred             CeeEEEecCC---ceeEEecCCCC-CCCCeEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEECCCCCcC
Confidence            8999998753   48888999998 9999999999999999999998877652  2356789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        75 ~~Gd~V~~~   83 (343)
T cd08236          75 AVGDRVAVN   83 (343)
T ss_pred             CCCCEEEEc
Confidence            999999875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.64  E-value=5.1e-15  Score=96.43  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++...++++.+.+++.+.|. +.++|++||+.++++|+.|.....+.......+|.++|+|++|+|++.  ++..|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~-~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~--~~~~~   77 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDD-LPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVES--NDPRF   77 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCC-CCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEc--CCCCC
Confidence            899999988877778899999998 999999999999999999987654322112245788999999999995  45679


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        78 ~~Gd~V~~~   86 (326)
T cd08289          78 KPGDEVIVT   86 (326)
T ss_pred             CCCCEEEEc
Confidence            999999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.63  E-value=5.1e-15  Score=97.15  Aligned_cols=83  Identities=39%  Similarity=0.498  Sum_probs=73.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..+   ..+.+.+.+.|. +.++|++|++.++++|+.|+....+.++.. .+|.++|+|++|+|+.+|++++.|
T Consensus         1 ~~a~~~~~~---~~~~~~~~~~~~-~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~   75 (337)
T cd08261           1 MKALVCEKP---GRLEVVDIPEPV-PGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGL   75 (337)
T ss_pred             CeEEEEeCC---CceEEEECCCCC-CCCCeEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCC
Confidence            899999864   358889999999 999999999999999999999888765432 446789999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|++
T Consensus        76 ~~Gd~V~~   83 (337)
T cd08261          76 KVGDRVVV   83 (337)
T ss_pred             CCCCEEEE
Confidence            99999986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.63  E-value=6.7e-15  Score=95.14  Aligned_cols=88  Identities=40%  Similarity=0.628  Sum_probs=75.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+.+.+.+..+.+.+.+.|. +++++++|++.++++|+.|+....+.+......+..+|+|++|+|+.+|+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPA-PGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGF   79 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCC-CCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcC
Confidence            899999877777778888888887 8999999999999999999988776554333456789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (328)
T cd08268          80 AVGDRVSVI   88 (328)
T ss_pred             CCCCEEEec
Confidence            999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.63  E-value=5.1e-15  Score=97.21  Aligned_cols=83  Identities=34%  Similarity=0.354  Sum_probs=72.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCC-CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||+|++..+   ..+.+++.+.|+ +. ++||+|++.++++|+.|+....+.++  ...|..+|+|++|+|+++|++++.
T Consensus         1 ~~a~~~~~~---~~~~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~vG~~v~~   74 (344)
T cd08284           1 MKAVVFKGP---GDVRVEEVPIPQ-IQDPTDAIVKVTAAAICGSDLHIYRGHIP--STPGFVLGHEFVGEVVEVGPEVRT   74 (344)
T ss_pred             CeeEEEecC---CCceEEeccCCC-CCCCCeEEEEEEEeeccccchhhhcCCCC--CCCCcccccceEEEEEeeCCCccc
Confidence            899999754   458899999998 75 99999999999999999988877654  244678999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      +++||+|++.
T Consensus        75 ~~~Gd~V~~~   84 (344)
T cd08284          75 LKVGDRVVSP   84 (344)
T ss_pred             cCCCCEEEEc
Confidence            9999999874

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.62  E-value=1.5e-14  Score=93.76  Aligned_cols=87  Identities=34%  Similarity=0.407  Sum_probs=74.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++..+++.+++.+.|. +.+++++|++.++++|+.|+....+.+.. ...+..+|+|++|+|+.+|+++..|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~   78 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPG-PGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGW   78 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcC
Confidence            899999977654469999999999 99999999999999999999887665422 1236789999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        79 ~~Gd~V~~~   87 (325)
T cd08271          79 KVGDRVAYH   87 (325)
T ss_pred             CCCCEEEec
Confidence            999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.62  E-value=7.9e-15  Score=95.55  Aligned_cols=77  Identities=34%  Similarity=0.392  Sum_probs=67.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.++   ..+++++.+.|+ ++++|++||+.++++|+.|.....+.++    .|.++|+|++|+|+++|++   +
T Consensus         1 ~~a~~~~~~---~~~~~~~~~~p~-~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~   69 (319)
T cd08242           1 MKALVLDGG---LDLRVEDLPKPE-PPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---E   69 (319)
T ss_pred             CeeEEEeCC---CcEEEEECCCCC-CCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---C
Confidence            899999853   359999999999 9999999999999999999998887653    4678999999999999988   6


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|..
T Consensus        70 ~~G~~V~~   77 (319)
T cd08242          70 LVGKRVVG   77 (319)
T ss_pred             CCCCeEEE
Confidence            79999974

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.62  E-value=7.3e-15  Score=96.61  Aligned_cols=82  Identities=24%  Similarity=0.303  Sum_probs=71.9

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |+|+.++.+  .++++++.+.|. +.++|++||+.++++|+.|+....+.+. ...+|.++|+|++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~--~~~~~~~~~~p~-~~~~evlirv~a~~i~~~d~~~~~g~~~-~~~~p~~~g~e~~G~V~~vG~~v~~~~   76 (337)
T cd05283           1 KGYAARDAS--GKLEPFTFERRP-LGPDDVDIKITYCGVCHSDLHTLRNEWG-PTKYPLVPGHEIVGIVVAVGSKVTKFK   76 (337)
T ss_pred             CceEEecCC--CCceEEeccCCC-CCCCeEEEEEEEecccchHHHHhcCCcC-CCCCCcccCcceeeEEEEECCCCcccC
Confidence            467777655  569999999999 9999999999999999999998887653 235678999999999999999999999


Q ss_pred             CCCEEE
Q psy3511          82 VKNIVR   87 (91)
Q Consensus        82 ~Gd~V~   87 (91)
                      +||+|+
T Consensus        77 ~Gd~V~   82 (337)
T cd05283          77 VGDRVG   82 (337)
T ss_pred             CCCEEE
Confidence            999997

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.61  E-value=7.8e-15  Score=95.67  Aligned_cols=81  Identities=26%  Similarity=0.381  Sum_probs=65.9

Q ss_pred             CeEEEEcc-c-CCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCC
Q psy3511           1 MLAVQCKR-W-GEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQG   76 (91)
Q Consensus         1 m~a~~~~~-~-~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~   76 (91)
                      ||+|.+.+ + +++  +.+++++.+.|+ +++|||+||+++++||+.|+.....    ....|.++|+|++|+|++   .
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~-~~~~evlVkv~a~~in~~~~~~~~~----~~~~p~v~G~e~~G~V~~---~   74 (329)
T cd08294           3 AKTWVLKKHFDGKPKESDFELVEEELPP-LKDGEVLCEALFLSVDPYMRPYSKR----LNEGDTMIGTQVAKVIES---K   74 (329)
T ss_pred             ceEEEEecCCCCCCCccceEEEecCCCC-CCCCcEEEEEEEEecCHHHhccccc----CCCCCcEecceEEEEEec---C
Confidence            89999988 4 444  779999999999 9999999999999999987642211    124578999999999985   4


Q ss_pred             CCCCCCCCEEEee
Q psy3511          77 VKHFKVKNIVRSS   89 (91)
Q Consensus        77 ~~~~~~Gd~V~~~   89 (91)
                      ++.|++||+|++.
T Consensus        75 ~~~~~~Gd~V~~~   87 (329)
T cd08294          75 NSKFPVGTIVVAS   87 (329)
T ss_pred             CCCCCCCCEEEee
Confidence            4679999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.61  E-value=1.8e-14  Score=92.52  Aligned_cols=88  Identities=47%  Similarity=0.635  Sum_probs=75.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..++..+.+.+.+.+.|. +++++++|++.++++|+.|+....+....  ....|..+|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~   79 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPE-PGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT   79 (309)
T ss_pred             CceEEEcccCCccceeecccCCCC-CCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence            899999887776667788888877 89999999999999999999888775421  124477899999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|++.
T Consensus        80 ~~~~G~~V~~~   90 (309)
T cd05289          80 GFKVGDEVFGM   90 (309)
T ss_pred             CCCCCCEEEEc
Confidence            99999999875

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.61  E-value=7.7e-15  Score=96.54  Aligned_cols=77  Identities=27%  Similarity=0.266  Sum_probs=61.0

Q ss_pred             CCceEEEEecC----CCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccce--EEEEEEeCCCCCCCCCCCE
Q psy3511          12 PRVLELTTVDK----PGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEV--SGIVEEVGQGVKHFKVKNI   85 (91)
Q Consensus        12 ~~~~~~~~~~~----p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~--~G~V~~vG~~~~~~~~Gd~   85 (91)
                      ++.|++++.+.    |+ |++|||||||++++||+.|++.+.|.+......|.++|+++  .|.+..+|++++.|++||+
T Consensus        18 ~~~~~~~~~~~~~~~p~-p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~   96 (338)
T cd08295          18 ESDLELRTTKLTLKVPP-GGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDL   96 (338)
T ss_pred             ccceEEEEecCCcCCCC-CCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCE
Confidence            46799998877    77 99999999999999999999988875432124567788754  3455557788889999999


Q ss_pred             EEee
Q psy3511          86 VRSS   89 (91)
Q Consensus        86 V~~~   89 (91)
                      |+++
T Consensus        97 V~~~  100 (338)
T cd08295          97 VWGF  100 (338)
T ss_pred             EEec
Confidence            9865

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.61  E-value=1.3e-14  Score=96.57  Aligned_cols=83  Identities=33%  Similarity=0.475  Sum_probs=72.1

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |++++.+.+++  +++++.+.|. +.+++++|++.++++|+.|+....+.+.  ...|.++|+|++|+|+++|++++.++
T Consensus         2 ~a~~~~~~~~~--~~~~~~~~p~-~~~~~vlv~v~~~~i~~~d~~~~~g~~~--~~~~~i~g~e~~G~V~~vG~~v~~~~   76 (365)
T cd05279           2 KAAVLWEKGKP--LSIEEIEVAP-PKAGEVRIKVVATGVCHTDLHVIDGKLP--TPLPVILGHEGAGIVESIGPGVTTLK   76 (365)
T ss_pred             ceeEEecCCCC--cEEEEeecCC-CCCCeEEEEEEEeeecchhHHHhcCCCC--CCCCcccccceeEEEEEeCCCcccCC
Confidence            67777765554  8889999999 9999999999999999999998887653  24567899999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||+|++.
T Consensus        77 ~Gd~Vv~~   84 (365)
T cd05279          77 PGDKVIPL   84 (365)
T ss_pred             CCCEEEEc
Confidence            99999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.61  E-value=1.2e-14  Score=95.89  Aligned_cols=89  Identities=27%  Similarity=0.338  Sum_probs=70.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC-C
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-H   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~-~   79 (91)
                      +|++++..++++..++..+.+.|.++.+++|+|++.++++|+.|+....+........|.++|+|++|+|+++|++++ .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE   80 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence            578999988888556555666654248999999999999999999877543211112367899999999999999998 8


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||+|++.
T Consensus        81 ~~~Gd~V~~~   90 (352)
T cd08247          81 WKVGDEVCGI   90 (352)
T ss_pred             CCCCCEEEEe
Confidence            9999999875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05281 TDH Threonine dehydrogenase

Probab=99.59  E-value=2.8e-14  Score=93.93  Aligned_cols=86  Identities=35%  Similarity=0.383  Sum_probs=71.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-C-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~-~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++.+..++.  .+.+.+.+.|. +.++|++||+.++++|+.|+..+.+.. . .....|..+|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~   77 (341)
T cd05281           1 MKAIVKTKAGP--GAELVEVPVPK-PGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT   77 (341)
T ss_pred             CcceEEecCCC--ceEEEeCCCCC-CCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence            89999997664  48889999999 999999999999999999988765432 1 1123456799999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      .|++||+|++.
T Consensus        78 ~~~~Gd~V~~~   88 (341)
T cd05281          78 RVKVGDYVSAE   88 (341)
T ss_pred             CCCCCCEEEEC
Confidence            99999999873

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.59  E-value=5.1e-14  Score=90.93  Aligned_cols=88  Identities=41%  Similarity=0.577  Sum_probs=75.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+...+.+..+.+.+.+.+. +++++++|++.++++|+.|+....+.+.....+|..+|+|++|+|+.+|+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~   79 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPV-PKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRW   79 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCC
Confidence            899998877777778888777777 8999999999999999999988777654333457889999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        80 ~~Gd~V~~~   88 (325)
T TIGR02824        80 KVGDRVCAL   88 (325)
T ss_pred             CCCCEEEEc
Confidence            999999875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.58  E-value=3.1e-14  Score=95.74  Aligned_cols=88  Identities=39%  Similarity=0.542  Sum_probs=71.9

Q ss_pred             CeEEEEcc--cCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--------CCC-CCC-cccccceE
Q psy3511           1 MLAVQCKR--WGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--------NLP-DLP-AILGTEVS   67 (91)
Q Consensus         1 m~a~~~~~--~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--------~~~-~~p-~~~g~e~~   67 (91)
                      ||||.+..  ++++ +.+++.+.+.|. +++++++|++.++++|+.|.+...+...        +.. ..+ .++|+|++
T Consensus         8 ~~a~~~~~~~~~~~~~~~~~~~~~~p~-l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~   86 (398)
T TIGR01751         8 MYAFAIREERDGDPRQAIQLEVVPVPE-LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDAS   86 (398)
T ss_pred             hhheEEecccCCCcccceEEeecCCCC-CCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceE
Confidence            89999954  6665 569999999999 9999999999999999999877655321        000 123 37999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEee
Q psy3511          68 GIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        68 G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      |+|+++|++++.|++||+|++.
T Consensus        87 G~V~~vG~~v~~~~~Gd~V~~~  108 (398)
T TIGR01751        87 GVVWRVGPGVTRWKVGDEVVAS  108 (398)
T ss_pred             EEEEEeCCCCCCCCCCCEEEEc
Confidence            9999999999999999999874

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.58  E-value=7.1e-14  Score=90.40  Aligned_cols=85  Identities=33%  Similarity=0.477  Sum_probs=72.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+.+.+.+..+++.+.+.|. +.++|++||+.++++|+.|+....+.++. ...|.++|+|++|+|+++|.  ..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~   76 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPE-PKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTF   76 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCC
Confidence            899999877766678888888887 89999999999999999999988776532 34567899999999999995  579


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|++.
T Consensus        77 ~~Gd~V~~~   85 (320)
T cd08243          77 TPGQRVATA   85 (320)
T ss_pred             CCCCEEEEe
Confidence            999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.58  E-value=4.3e-14  Score=91.79  Aligned_cols=84  Identities=42%  Similarity=0.575  Sum_probs=71.0

Q ss_pred             EcccCCCC--ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy3511           6 CKRWGEPR--VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVK   83 (91)
Q Consensus         6 ~~~~~~~~--~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~G   83 (91)
                      +++++.+.  .+++++.+.|. +.+++++||+.++++|+.|+....+.+.....+|.++|+|++|+|+++|++++.|++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~G   81 (323)
T cd05282           3 YTQFGEPLPLVLELVSLPIPP-PGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVG   81 (323)
T ss_pred             eCcCCCCccceEEeEeCCCCC-CCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence            34555554  68888888888 9999999999999999999988877654334567889999999999999999999999


Q ss_pred             CEEEeeC
Q psy3511          84 NIVRSSK   90 (91)
Q Consensus        84 d~V~~~~   90 (91)
                      |+|++..
T Consensus        82 d~V~~~~   88 (323)
T cd05282          82 QRVLPLG   88 (323)
T ss_pred             CEEEEeC
Confidence            9999863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.57  E-value=9e-14  Score=90.46  Aligned_cols=87  Identities=36%  Similarity=0.473  Sum_probs=73.8

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |++.+.+.+.+..+.+.+.+.|. +.+++++|++.++++|+.|+....+.+...+..|..+|+|++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   79 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPE-PSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFK   79 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCC-CCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCC
Confidence            56777766666678888888887 89999999999999999999988776543335567899999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||+|+++
T Consensus        80 ~G~~V~~~   87 (337)
T cd08275          80 VGDRVMGL   87 (337)
T ss_pred             CCCEEEEe
Confidence            99999975

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.57  E-value=8.2e-14  Score=92.54  Aligned_cols=75  Identities=28%  Similarity=0.360  Sum_probs=63.3

Q ss_pred             CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511          13 RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        13 ~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~   88 (91)
                      +.+++++.+.|. +.++|++||+.++++|+.|+....+...  .....|.++|+|++|+|+++|++++.|++||+|++
T Consensus        27 ~~l~~~~~~~p~-~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~  103 (364)
T PLN02702         27 NTLKIQPFKLPP-LGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVAL  103 (364)
T ss_pred             CceEEEeccCCC-CCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEE
Confidence            458888888888 8999999999999999999998876321  11135678999999999999999999999999986

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.57  E-value=4.6e-14  Score=94.58  Aligned_cols=88  Identities=38%  Similarity=0.514  Sum_probs=70.5

Q ss_pred             CeEEEEc--ccCCCC-ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCC---------CCCCcccccceEE
Q psy3511           1 MLAVQCK--RWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL---------PDLPAILGTEVSG   68 (91)
Q Consensus         1 m~a~~~~--~~~~~~-~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~---------~~~p~~~g~e~~G   68 (91)
                      ||++++.  +++.+. .+++++.+.|. ++++||+|++.++++|++|+....+.....         ...+.++|+|++|
T Consensus        13 ~~a~~~~~~~~g~~~~~~~~~~~~~p~-l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G   91 (393)
T cd08246          13 MYAFAIRPERYGDPAQAIQLEDVPVPE-LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASG   91 (393)
T ss_pred             hhheeeecccCCCcccceEEeecCCCC-CCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEE
Confidence            7888775  344443 58899999999 999999999999999999998776642100         0122478999999


Q ss_pred             EEEEeCCCCCCCCCCCEEEee
Q psy3511          69 IVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        69 ~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      +|+++|++++.|++||+|++.
T Consensus        92 ~V~~vG~~v~~~~~Gd~V~~~  112 (393)
T cd08246          92 IVWAVGEGVKNWKVGDEVVVH  112 (393)
T ss_pred             EEEEeCCCCCcCCCCCEEEEe
Confidence            999999999999999999875

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.56  E-value=8.2e-14  Score=91.06  Aligned_cols=82  Identities=32%  Similarity=0.383  Sum_probs=71.7

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |++++.++++  .+++.+.+.|. +.+++++|++.++++|+.|+....+.+.. ..+|..+|+|++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~   76 (330)
T cd08245           1 KAAVVHAAGG--PLEPEEVPVPE-PGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRK   76 (330)
T ss_pred             CeEEEecCCC--CceEEeccCCC-CCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccc
Confidence            6788887654  48999999998 89999999999999999999988876532 34577899999999999999999999


Q ss_pred             CCCEEE
Q psy3511          82 VKNIVR   87 (91)
Q Consensus        82 ~Gd~V~   87 (91)
                      +||+|+
T Consensus        77 ~Gd~V~   82 (330)
T cd08245          77 VGDRVG   82 (330)
T ss_pred             cCCEEE
Confidence            999997

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.54  E-value=2.4e-13  Score=87.61  Aligned_cols=87  Identities=43%  Similarity=0.613  Sum_probs=72.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCC-CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      |+++++.+.+.+..+.+.+.+ +. +. +++++|++.++++|+.|+....+.+......+..+|+|++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~   78 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PE-PGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTG   78 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CC-CCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCC
Confidence            899999877766678887777 66 55 5999999999999999998877765332344668999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||+|+++
T Consensus        79 ~~~G~~V~~~   88 (323)
T cd08241          79 FKVGDRVVAL   88 (323)
T ss_pred             CCCCCEEEEe
Confidence            9999999985

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.54  E-value=8.1e-14  Score=91.70  Aligned_cols=73  Identities=34%  Similarity=0.384  Sum_probs=62.4

Q ss_pred             eEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511          15 LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        15 ~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~   88 (91)
                      +++++.+.|. +.++|++|++.++++|+.|+.++.+...  .....|.++|+|++|+|+++|++++.|++||+|++
T Consensus        11 ~~l~~~~~p~-~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   85 (340)
T TIGR00692        11 AELTEVPVPE-PGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSV   85 (340)
T ss_pred             cEEEECCCCC-CCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEE
Confidence            8888999999 8999999999999999999987655421  11234668999999999999999999999999986

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.53  E-value=2.8e-13  Score=87.09  Aligned_cols=85  Identities=46%  Similarity=0.661  Sum_probs=72.5

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      ||+.....+.+..+.+.+.+.+. +.+++++|++.++++|+.|+....+.++.  .+|.++|+|++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~   77 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPE-PGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFK   77 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCC-CCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCC
Confidence            56777766767778888888777 89999999999999999999988776532  3467899999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||+|+++
T Consensus        78 ~G~~V~~~   85 (320)
T cd05286          78 VGDRVAYA   85 (320)
T ss_pred             CCCEEEEe
Confidence            99999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.52  E-value=3.9e-13  Score=89.22  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=65.5

Q ss_pred             eEEEEccc--C--CCCceEEEEe---cCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCccccc--ceEEEEEE
Q psy3511           2 LAVQCKRW--G--EPRVLELTTV---DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGT--EVSGIVEE   72 (91)
Q Consensus         2 ~a~~~~~~--~--~~~~~~~~~~---~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~--e~~G~V~~   72 (91)
                      |.|.+.+.  +  .+++|++.+.   +.|.++++||||||+.++++|+.|+..+.+... ....|.++|+  +++|+|..
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~-~~~~p~~~G~~~~~~G~v~~   88 (348)
T PLN03154         10 KQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD-SYLPPFVPGQRIEGFGVSKV   88 (348)
T ss_pred             eEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC-CCCCCcCCCCeeEeeEEEEE
Confidence            56666443  2  2367888874   555326899999999999999998875543222 1235788997  88999999


Q ss_pred             eCCCCCCCCCCCEEEee
Q psy3511          73 VGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        73 vG~~~~~~~~Gd~V~~~   89 (91)
                      +|+++++|++||+|++.
T Consensus        89 vg~~v~~~~~Gd~V~~~  105 (348)
T PLN03154         89 VDSDDPNFKPGDLISGI  105 (348)
T ss_pred             EecCCCCCCCCCEEEec
Confidence            99999999999999865

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.52  E-value=1.7e-13  Score=89.94  Aligned_cols=77  Identities=31%  Similarity=0.349  Sum_probs=64.6

Q ss_pred             CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHh-CCCC-CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511          11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS-GQYP-NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        11 ~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~-~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~   88 (91)
                      +.+.+.+++.+.|. ++++||+||+.++++|+.|+.... +.+. ....+|.++|+|++|+|+++|+++++|++||+|++
T Consensus         5 ~~~~~~~~~~~~p~-l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~   83 (339)
T cd08232           5 AAGDLRVEERPAPE-PGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAV   83 (339)
T ss_pred             cCCceEEEEcCCCC-CCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEE
Confidence            45679999999999 999999999999999999987763 3221 11235678999999999999999999999999986

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.51  E-value=4.7e-13  Score=89.67  Aligned_cols=74  Identities=32%  Similarity=0.569  Sum_probs=63.6

Q ss_pred             ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC------CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEE
Q psy3511          14 VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY------PNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVR   87 (91)
Q Consensus        14 ~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~------~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~   87 (91)
                      .+++++.+.|+ +++++++|++.++++|+.|+....+..      +....+|.++|+|++|+|+++|++++.|++||+|+
T Consensus        38 ~~~~~~~~~p~-~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~  116 (384)
T cd08265          38 ELRVEDVPVPN-LKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVT  116 (384)
T ss_pred             CEEEEECCCCC-CCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEE
Confidence            48889999999 999999999999999999998876321      11234678999999999999999999999999998


Q ss_pred             e
Q psy3511          88 S   88 (91)
Q Consensus        88 ~   88 (91)
                      +
T Consensus       117 ~  117 (384)
T cd08265         117 A  117 (384)
T ss_pred             E
Confidence            5

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.50  E-value=3.1e-13  Score=87.43  Aligned_cols=78  Identities=26%  Similarity=0.270  Sum_probs=65.8

Q ss_pred             CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHH-hCCCCC-CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511          11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR-SGQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        11 ~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~~-~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~   88 (91)
                      +++.+++.+.+.|+ +.++|++|++.++++|+.|+... .+.... .+..|..+|+|++|+|+++|++++.|++||+|++
T Consensus         3 ~~~~~~~~~~~~~~-l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   81 (312)
T cd08269           3 GPGRFEVEEHPRPT-PGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG   81 (312)
T ss_pred             CCCeeEEEECCCCC-CCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence            34568999999999 99999999999999999998877 554321 1234678999999999999999999999999997


Q ss_pred             e
Q psy3511          89 S   89 (91)
Q Consensus        89 ~   89 (91)
                      +
T Consensus        82 ~   82 (312)
T cd08269          82 L   82 (312)
T ss_pred             e
Confidence            5

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.49  E-value=3.8e-13  Score=88.08  Aligned_cols=80  Identities=21%  Similarity=0.271  Sum_probs=62.0

Q ss_pred             eEEEEcc----cCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           2 LAVQCKR----WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         2 ~a~~~~~----~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      |.|++..    +..++.+++.+.+.|. +++|||+|||+++++|+.++   .|.+.. ...|.++|.|++|+|++.|+  
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~~~~p~-~~~~evlv~v~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~~~--   74 (325)
T TIGR02825         2 KTWTLKKHFVGYPTDSDFELKTVELPP-LNNGEVLLEALFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESKNV--   74 (325)
T ss_pred             cEEEEecCCCCCCCCCceEEEeccCCC-CCCCcEEEEEEEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeCCC--
Confidence            4455533    3456789999999999 99999999999999999654   343322 23467899999999999764  


Q ss_pred             CCCCCCCEEEee
Q psy3511          78 KHFKVKNIVRSS   89 (91)
Q Consensus        78 ~~~~~Gd~V~~~   89 (91)
                       .|++||+|++.
T Consensus        75 -~~~~GdrV~~~   85 (325)
T TIGR02825        75 -ALPKGTIVLAS   85 (325)
T ss_pred             -CCCCCCEEEEe
Confidence             59999999875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.46  E-value=6.6e-13  Score=85.85  Aligned_cols=83  Identities=40%  Similarity=0.512  Sum_probs=68.1

Q ss_pred             EcccCCCCce--EEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           6 CKRWGEPRVL--ELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         6 ~~~~~~~~~~--~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      ++.+++++++  ++.+.+.|. +++++|+|++.++++|+.|+....+.++.  ....+..+|+|++|.|.++|+++..|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~   81 (319)
T cd08267           3 YTRYGSPEVLLLLEVEVPIPT-PKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFK   81 (319)
T ss_pred             eCCCCChhhhhhccccCCCCC-CCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCC
Confidence            3445565554  777888888 89999999999999999999988776522  123456899999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||+|++.
T Consensus        82 ~Gd~V~~~   89 (319)
T cd08267          82 VGDEVFGR   89 (319)
T ss_pred             CCCEEEEe
Confidence            99999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.46  E-value=9.6e-13  Score=86.71  Aligned_cols=75  Identities=33%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCC-CC-CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511          13 RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQ-YP-NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS   88 (91)
Q Consensus        13 ~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~-~~-~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~   88 (91)
                      +.+.+++.+.|. +.++|++|++.++++|+.|+....+. .. .....|.++|+|++|+|+++|++++.|++||+|++
T Consensus         8 ~~~~~~~~~~~~-l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   84 (343)
T cd05285           8 GDLRLEERPIPE-PGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAI   84 (343)
T ss_pred             CceeEEECCCCC-CCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEE
Confidence            468889999998 99999999999999999998876432 11 11134668999999999999999999999999985

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.44  E-value=2.7e-12  Score=83.70  Aligned_cols=85  Identities=25%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             eEEEEcccC----CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCC
Q psy3511           2 LAVQCKRWG----EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQ   75 (91)
Q Consensus         2 ~a~~~~~~~----~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~   75 (91)
                      |+|.+....    .++.+++++.+.|. +.+++++||+.++++|+.|+....+....  ....+..+|+|++|+|+++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELVEVPLPE-LKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             cEEEEeccCCCCCCccceeEEeccCCC-CCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            677886654    45789999999998 99999999999999999877655443211  112346789999999999996


Q ss_pred             CCCCCCCCCEEEee
Q psy3511          76 GVKHFKVKNIVRSS   89 (91)
Q Consensus        76 ~~~~~~~Gd~V~~~   89 (91)
                      +  .|++||+|++.
T Consensus        82 ~--~~~~Gd~V~~~   93 (329)
T cd05288          82 P--DFKVGDLVSGF   93 (329)
T ss_pred             C--CCCCCCEEecc
Confidence            4  79999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08251 polyketide_synthase polyketide synthase

Probab=99.38  E-value=6.8e-12  Score=80.44  Aligned_cols=67  Identities=30%  Similarity=0.366  Sum_probs=58.9

Q ss_pred             CCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          22 KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        22 ~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      .|. +.+++++|++.++++|+.|+....+.++....+|.++|+|++|+|+++|+++.+|++||+|++.
T Consensus         2 ~p~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~   68 (303)
T cd08251           2 VAP-PGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAG   68 (303)
T ss_pred             CCC-CCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEe
Confidence            466 8899999999999999999998887664434567889999999999999999999999999875

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.28  E-value=2.4e-11  Score=76.82  Aligned_cols=61  Identities=49%  Similarity=0.685  Sum_probs=53.1

Q ss_pred             eEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511          30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSK   90 (91)
Q Consensus        30 ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~   90 (91)
                      ||+|++.++++|+.|+....+.++.....|.++|+|++|+|+++|++++.|++||+|++..
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~   61 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLP   61 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcC
Confidence            6899999999999999998886542335578899999999999999999999999999753

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.16  E-value=2.8e-10  Score=74.24  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC--CCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        12 ~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~--~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      .+.|++++.+.|. +++||+|+|+.|.|++|..+.++....++.+  .+..++-...+|+|++  |+...|++||.|.++
T Consensus        24 ~d~F~lee~~vp~-p~~GqvLl~~~ylS~DPymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~--S~~~~f~~GD~V~~~  100 (340)
T COG2130          24 PDDFRLEEVDVPE-PGEGQVLLRTLYLSLDPYMRGRMSDAPSYAPPVELGEVMVGGTVAKVVA--SNHPGFQPGDIVVGV  100 (340)
T ss_pred             CCCceeEeccCCC-CCcCceEEEEEEeccCHHHeecccCCcccCCCcCCCceeECCeeEEEEe--cCCCCCCCCCEEEec
Confidence            3679999999999 9999999999999999977766655544332  3334555667777887  888999999999876


Q ss_pred             C
Q psy3511          90 K   90 (91)
Q Consensus        90 ~   90 (91)
                      .
T Consensus       101 ~  101 (340)
T COG2130         101 S  101 (340)
T ss_pred             c
Confidence            3

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.13  E-value=4.1e-10  Score=71.39  Aligned_cols=58  Identities=43%  Similarity=0.533  Sum_probs=51.5

Q ss_pred             CeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        29 ~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      +|++||+.++++|+.|+....+.+   ...|.++|+|++|+|+++|++++.|++||+|+++
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~---~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~   58 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL---PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL   58 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC---CCCCCccceeeeEEEEeecCCccCCCCCCEEEEE
Confidence            589999999999999999887754   2346789999999999999999999999999875

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=98.85  E-value=1.6e-08  Score=64.11  Aligned_cols=53  Identities=40%  Similarity=0.538  Sum_probs=47.1

Q ss_pred             EEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          33 VKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        33 v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      ||+.++++|+.|+....+.++    .+.++|+|++|+|+++|++++.|++||+|++.
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~   54 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL   54 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE
Confidence            789999999999998877543    24689999999999999999999999999875

Enoylreductase in Polyketide synthases.

>KOG1198|consensus

Probab=98.78  E-value=9.6e-08  Score=63.93  Aligned_cols=86  Identities=35%  Similarity=0.453  Sum_probs=59.7

Q ss_pred             EEEEcccCC-CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC---CCCcc---cccceEEEEEEeC-
Q psy3511           3 AVQCKRWGE-PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP---DLPAI---LGTEVSGIVEEVG-   74 (91)
Q Consensus         3 a~~~~~~~~-~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~---~~p~~---~g~e~~G~V~~vG-   74 (91)
                      .+.+....+ .......+.++|. +.++++++++.++++|+.|++++.+.+....   .+|.+   .|.+.+|.+...| 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~iP~-~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~   85 (347)
T KOG1198|consen    7 RVSLVSPPGGGEVLFSEEVPIPE-PEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGD   85 (347)
T ss_pred             eEEEeccCCCcceEEeecccCCC-CCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecccc
Confidence            344444433 3445556888999 9999999999999999999999999886555   67744   4445555556666 


Q ss_pred             CCCCCCCCCCEEEee
Q psy3511          75 QGVKHFKVKNIVRSS   89 (91)
Q Consensus        75 ~~~~~~~~Gd~V~~~   89 (91)
                      ..+..+..||++...
T Consensus        86 ~~~~~~~~g~~~~~~  100 (347)
T KOG1198|consen   86 DVVGGWVHGDAVVAF  100 (347)
T ss_pred             ccccceEeeeEEeec
Confidence            344456677666543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=98.35  E-value=5.1e-07  Score=58.35  Aligned_cols=29  Identities=28%  Similarity=0.392  Sum_probs=26.6

Q ss_pred             ccccceEEEEEEeCCCCC------CCCCCCEEEee
Q psy3511          61 ILGTEVSGIVEEVGQGVK------HFKVKNIVRSS   89 (91)
Q Consensus        61 ~~g~e~~G~V~~vG~~~~------~~~~Gd~V~~~   89 (91)
                      ++|||++|+|+++|++++      +|++||||...
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~   35 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWS   35 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEc
Confidence            479999999999999999      89999999764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1196|consensus

Probab=98.10  E-value=4.6e-05  Score=50.29  Aligned_cols=75  Identities=23%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             CceEEE--EecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCc----ccccceEEEEEEeCCCCCCCCCCCEE
Q psy3511          13 RVLELT--TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA----ILGTEVSGIVEEVGQGVKHFKVKNIV   86 (91)
Q Consensus        13 ~~~~~~--~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~----~~g~e~~G~V~~vG~~~~~~~~Gd~V   86 (91)
                      ++|.++  +.+.+.++++++++||..|.|.+|..+.++..-.+..-..|.    +.-...+|.|++  ++.++|++||.|
T Consensus        20 ~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v   97 (343)
T KOG1196|consen   20 SDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLV   97 (343)
T ss_pred             ccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe--cCCCCCCcCceE
Confidence            445444  444343379999999999999999887766543322111222    233478999999  677889999999


Q ss_pred             Eee
Q psy3511          87 RSS   89 (91)
Q Consensus        87 ~~~   89 (91)
                      ++.
T Consensus        98 ~g~  100 (343)
T KOG1196|consen   98 WGI  100 (343)
T ss_pred             EEe
Confidence            875

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=98.07  E-value=8.3e-06  Score=52.21  Aligned_cols=33  Identities=39%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             CCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          57 DLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        57 ~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      ++|.++|+|++|+|+++|++++.|++||+|+++
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   51 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF   51 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec
Confidence            578999999999999999999999999999875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=95.05  E-value=0.036  Score=22.77  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=13.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPG   24 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~   24 (91)
                      |||+.+.   ++.++++++.+.|.
T Consensus         1 MkAv~y~---G~~~v~ve~VpdP~   21 (23)
T PF13823_consen    1 MKAVVYH---GPKDVRVEEVPDPK   21 (23)
T ss_dssp             -EEEEEE---ETTEEEEEEE----
T ss_pred             CcceEEe---CCCceEEEECCCcc
Confidence            8999988   56678999998886

>KOG1202|consensus

Probab=94.72  E-value=0.09  Score=41.35  Aligned_cols=70  Identities=21%  Similarity=0.169  Sum_probs=50.2

Q ss_pred             CCCCceEEEEecCC--CCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC------CCCcccccceEEEEEEeCCCCCCCC
Q psy3511          10 GEPRVLELTTVDKP--GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP------DLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus        10 ~~~~~~~~~~~~~p--~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~------~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      |....+++.+.+..  .+..++.=+..|-|+.||++|+++..|..+...      .....+|.|++|+-          +
T Consensus      1424 GDlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~ 1493 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------A 1493 (2376)
T ss_pred             ccccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------C
Confidence            34456777777654  215678889999999999999999998764321      22357899999873          3


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      -|.||+++
T Consensus      1494 ~GrRvM~m 1501 (2376)
T KOG1202|consen 1494 SGRRVMGM 1501 (2376)
T ss_pred             CCcEEEEe
Confidence            47788765

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=93.87  E-value=0.098  Score=28.87  Aligned_cols=23  Identities=35%  Similarity=0.304  Sum_probs=19.3

Q ss_pred             eEEEEEEeCCCC---------CCCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGV---------KHFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~---------~~~~~Gd~V~~   88 (91)
                      ..|+|+++|++.         ..+++||+|+.
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~   66 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLF   66 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEEE
Confidence            689999999973         35899999975

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=93.17  E-value=0.16  Score=28.55  Aligned_cols=23  Identities=30%  Similarity=0.276  Sum_probs=18.9

Q ss_pred             eEEEEEEeCCCCC----CCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGVK----HFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~~----~~~~Gd~V~~   88 (91)
                      ..|+|+++|++..    .+++||+|+.
T Consensus        45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl~   71 (100)
T PTZ00414         45 NEGTVVAVAAATKDWTPTVKVGDTVLL   71 (100)
T ss_pred             ceeEEEEECCCCccccceecCCCEEEE
Confidence            4699999999853    4899999975

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=92.62  E-value=0.16  Score=28.18  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=19.3

Q ss_pred             eEEEEEEeCCCCC---------CCCCCCEEEee
Q psy3511          66 VSGIVEEVGQGVK---------HFKVKNIVRSS   89 (91)
Q Consensus        66 ~~G~V~~vG~~~~---------~~~~Gd~V~~~   89 (91)
                      ..|+|+++|++..         .+++||+|+..
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~   68 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG   68 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence            5799999999642         48999999753

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=91.21  E-value=0.38  Score=26.51  Aligned_cols=24  Identities=29%  Similarity=0.184  Sum_probs=18.9

Q ss_pred             eEEEEEEeCCCCC----CCCCCCEEEee
Q psy3511          66 VSGIVEEVGQGVK----HFKVKNIVRSS   89 (91)
Q Consensus        66 ~~G~V~~vG~~~~----~~~~Gd~V~~~   89 (91)
                      ..|+|+++|++..    .+++||+|+..
T Consensus        36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~   63 (91)
T PRK14533         36 MKAEVVAVGKLDDEEDFDIKVGDKVIFS   63 (91)
T ss_pred             ceEEEEEECCCCccccccccCCCEEEEc
Confidence            5799999997542    48999999753

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=90.20  E-value=0.42  Score=26.56  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=17.3

Q ss_pred             eEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGVK---------HFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~~---------~~~~Gd~V~~   88 (91)
                      --|+|+++|++-.         .+++||+|+.
T Consensus        36 ~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf   67 (96)
T COG0234          36 QEGEVVAVGPGRRDENGELVPLDVKVGDRVLF   67 (96)
T ss_pred             cceEEEEEccceecCCCCEeccccccCCEEEE
Confidence            3589999997422         3899999974

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=89.84  E-value=0.4  Score=26.34  Aligned_cols=26  Identities=31%  Similarity=0.252  Sum_probs=18.0

Q ss_pred             cceEEEEEEeCC--------CC-CCCCCCCEEEee
Q psy3511          64 TEVSGIVEEVGQ--------GV-KHFKVKNIVRSS   89 (91)
Q Consensus        64 ~e~~G~V~~vG~--------~~-~~~~~Gd~V~~~   89 (91)
                      -...|+|+++|+        .+ ..+++||+|+..
T Consensus        33 ~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~   67 (93)
T PF00166_consen   33 KPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFP   67 (93)
T ss_dssp             SEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEE
T ss_pred             ccceeEEEEcCCccccCCCcEeeeeeeeccEEecc
Confidence            346899999999        22 358999999754

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>KOG1641|consensus

Probab=83.65  E-value=2.1  Score=24.09  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             ccceEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511          63 GTEVSGIVEEVGQGVK---------HFKVKNIVRS   88 (91)
Q Consensus        63 g~e~~G~V~~vG~~~~---------~~~~Gd~V~~   88 (91)
                      +-...|+|+++|++..         ..++||+|..
T Consensus        41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLl   75 (104)
T KOG1641|consen   41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLL   75 (104)
T ss_pred             cccceEEEEEEcCccccCCCCCcCccccCCCEEEe
Confidence            4446789999888643         4789999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		2e-13
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		3e-12
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		3e-09
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		3e-08
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		4e-08
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-07
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		2e-07
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-07
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		2e-07
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		1e-06
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		3e-06
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		5e-06
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		6e-06
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		6e-06
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		6e-06
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		7e-06
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		2e-05
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		3e-05
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		3e-05
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		3e-05
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		3e-05
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		4e-05
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		8e-05
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		9e-05
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		1e-04
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		2e-04
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-04
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		2e-04
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		2e-04
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		2e-04
3gms_A	340	Crystal Structure Of Putative Nadph:quinone Reducta		3e-04
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		3e-04
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		4e-04
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		4e-04
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		5e-04
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		5e-04
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		5e-04
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		5e-04
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		5e-04
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		6e-04
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		9e-04

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 1   MLAVQCKRWGEPRVLEL-TTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
           M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct: 30  MRAVRVFEFGGPEVLKLRSDIAVPIPK-DHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 88
Query: 60  AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
              G++V+G++E VG     FK  + V +S +
Sbjct: 89  YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 120

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 4  VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILG 63
          ++  + G P VL+        P  ++E+ V+  A GIN ++TYIRSG YP  P LP+ LG
Sbjct: 5  IEFHKHGGPEVLQAVEFTPADPA-ENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLG 62
Query: 64 TEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
          TE +GIV +VG GVKH K  + V  ++S
Sbjct: 63 TEAAGIVSKVGSGVKHIKAGDRVVYAQS 90

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 4  VQCKRWGEPRVLELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAI 61
          +Q    G P VLE    +   PGP     V+V+  A G+N ++TY RSG YP  P LP+ 
Sbjct: 5  IQFSTVGGPEVLEYVDFEPEAPGP---QAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSG 60
Query: 62 LGTEVSGIVEEVGQGVKHFKVKNIV 86
          LG E +G+VE VG  V  FKV + V
Sbjct: 61 LGAEGAGVVEAVGDEVTRFKVGDRV 85

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           MLAV   + G P  L +  V KP P  + EVL+KV A+ +N  +   R GQY   P    
Sbjct: 23  MLAVHFDKPGGPENLYVKEVAKPSPG-EGEVLLKVAASALNRADLMQRQGQYDPPPGASN 81
Query: 61  ILGTEVSGIVEEVGQGVK-HFKV 82
           ILG E SG V E+G G + H+K+
Sbjct: 82  ILGLEASGHVAELGPGCQGHWKI 104

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          MLAV   + G P  L +  V KP P  + EVL+KV A+ +N  +   R GQY   P    
Sbjct: 7  MLAVHFDKPGGPENLYVKEVAKPSPG-EGEVLLKVAASALNRADLMQRQGQYDPPPGASN 65
Query: 61 ILGTEVSGIVEEVGQGVK-HFKV 82
          ILG E SG V E+G G + H+K+
Sbjct: 66 ILGLEASGHVAELGPGCQGHWKI 88

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   +++ EP  L++  V+KP      EVLV++ A G+   + +   G +P  P LP 
Sbjct: 1  MKAAVVEQFKEP--LKIKEVEKPTISYG-EVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          I G E  GIVEEVG GV H KV + V
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKVGDRV 83

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   +++ EP  L++  V+KP      EVLV++ A G+   + +   G +P  P LP 
Sbjct: 1  MKAAVVEQFKEP--LKIKEVEKPTISYG-EVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          I G E  GIVEEVG GV H KV + V
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKVGDRV 83

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 1  MLAVQCKRWGEPRVLELTT--VDKPGPCLDDEVLVKVMAAGINPVETYIRSG-QYPNLPD 57
          M AV  +  G P VLE+    V +PGP    EV V++ AA +N ++ ++R G   P LP 
Sbjct: 1  MRAVVMRARGGPEVLEVADLPVPEPGP---KEVRVRLKAAALNHLDVWVRKGVASPKLP- 56
Query: 58 LPAILGTEVSGIVEEVGQGVKHF 80
          LP +LG + SG+V+ VG GV+ F
Sbjct: 57 LPHVLGADGSGVVDAVGPGVEGF 79

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD-LPAILGTEVSGIV 70
          P VL      +P P    +VLV++ A+G NP++  IR+G+ P+    LPAILG +++G V
Sbjct: 19 PFVLRKLARPQPAP---GQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGXDLAGTV 75
Query: 71 EEVGQGVKHFKVKNIV 86
            VG  V  F+V + V
Sbjct: 76 VAVGPEVDSFRVGDAV 91

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 21 DKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
          D P P + ++E+L+K    G+N +E+Y R G YP   + P +LG E SG V   G+GV +
Sbjct: 27 DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGVTN 84
Query: 80 FKVKNIV 86
          F+V + V
Sbjct: 85 FEVGDQV 91

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
          DEVLVKV+A G+   +  +R  +YP +P LPA+LG E SGI+E +G  V   +V + V
Sbjct: 32 DEVLVKVVATGMCHTDLIVRDQKYP-VP-LPAVLGHEGSGIIEAIGPNVTELQVGDHV 87

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
          M AV+    G+P  L+   V KP GP    +VL+KV AAG+   + ++R G++ NL    
Sbjct: 1  MRAVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56
Query: 57 ----DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
               LP  LG E++G +EEVG  V  +   ++V
Sbjct: 57 DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
          M AV+    G+P  L+   V KP GP    +VL+KV AAG+   + ++R G++ NL    
Sbjct: 1  MRAVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56
Query: 57 ----DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
               LP  LG E++G +EEVG  V  +   ++V
Sbjct: 57 DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
          M AV+    G+P  L+   V KP GP    +VL+KV AAG+   + ++R G++ NL    
Sbjct: 1  MRAVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56
Query: 57 ----DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
               LP  LG E++G +EEVG  V  +   ++V
Sbjct: 57 DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           M A   + +G+P  ++   + +PGP    ++ V + A+G+   + +   G +P  P+ P 
Sbjct: 26  MKAAVVRAFGKPLTIDEVPIPQPGP---GQIQVAIQASGVCHTDLHAAEGDWPVKPNPPF 82
Query: 61  ILGTEVSGIVEEVGQGVKHFK 81
           I G E  G V  VG GVKH K
Sbjct: 83  IPGHEGVGFVSAVGSGVKHVK 103

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV    +G    L L     P P  D E+ ++V A G+N ++  +R G   N P  P 
Sbjct: 4  MRAVVLAGFGGLNKLRLFRKAMPEP-QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPL 62
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRS 88
          + G E SGIVE +G  VK +++ + V +
Sbjct: 63 VPGFECSGIVEALGDSVKGYEIGDRVMA 90

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 3  AVQCKRWGEPRVLELTTVDKPGP-CLDDEVLVKVMAAGINPVETYIRSG------QYPNL 55
          A+Q  ++G P+VL+L  VD P P    ++ L+KV AA +NP++   R+G      +  N 
Sbjct: 9  AIQFDQFGPPKVLKL--VDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKN- 65
Query: 56 PDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
           +LP+ LG + SG V E+G  V +  + + V
Sbjct: 66 -NLPSGLGYDFSGEVIELGSDVNNVNIGDKV 95

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   + +G P  ++   V +PGP    +V VK+ A+G+   + +   G +P  P LP 
Sbjct: 3  MKAAVVRAFGAPLTIDEVPVPQPGP---GQVQVKIEASGVCHTDLHAADGDWPVKPTLPF 59
Query: 61 ILGTEVSGIVEEVGQGVKHFK 81
          I G E  G V  VG GV   K
Sbjct: 60 IPGHEGVGYVSAVGSGVSRVK 80

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A     +G P  +E   V  PGP    +VLVK+ A+G+   + +   G +P  P LP 
Sbjct: 7  MKAAVVHAYGAPLRIEEVKVPLPGP---GQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 63
Query: 61 ILGTEVSGIVEEVGQGVKHFK 81
          I G E  G V  VG GV   K
Sbjct: 64 IPGHEGVGYVAAVGSGVTRVK 84

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 2   LAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL----- 55
           +A    ++G+  VL  T  +  P     +EV+VKV AA +NP++  +RSG          
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 56  ---------PDLPAILGTEVSGIVEEVGQGVKHFK 81
                     + P  LG +VSG+V E G  VK+FK
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFK 117

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 3  AVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP----- 56
          AV+    G+P  L+   V KP GP    +VL+KV AAG+   + + R G++ NL      
Sbjct: 3  AVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDL 58
Query: 57 --DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
             LP  LG E++G +EEVG  V  +   ++V
Sbjct: 59 GVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP---- 56
          M A++    G+P  LE   + KP      +VL+K+ AAG+   + ++R G++ NL     
Sbjct: 1  MRAMRLVEIGKPLKLEDIPIPKPK---GSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVED 57
Query: 57 ---DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
              LP  LG E++G +EEVG  V  +   ++V
Sbjct: 58 LGVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLV 90

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 20 VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
          + +PGP   D++LVKV A GI   + ++  G++P+ P  P  LG E  GIV E G  V+
Sbjct: 42 IPEPGP---DDLLVKVEACGICGTDRHLLHGEFPSTP--PVTLGHEFCGIVVEAGSAVR 95

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 30 EVLVKVMAAGI-----NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKN 84
          +VL+ ++ AGI     +   +  + G YP +P      G E++GI++EVG+GVK FK+ +
Sbjct: 31 DVLIDILYAGICHSDIHSAYSEWKEGIYPMIP------GHEIAGIIKEVGKGVKKFKIGD 84
Query: 85 IV 86
          +V
Sbjct: 85 VV 86

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 4   VQCKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
           V  K +G P V  +    +P P   + EVLV+  A G+N  +   R G YP   D   IL
Sbjct: 32  VDLKSFGGPDVXVIGK--RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89
Query: 63  GTEVSGIVEEVGQGVKHFKVKNIV 86
           G E+SG +  VG GV  + V + V
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKV 113

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 4  VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
          ++CK    W  G+P  +E   V  P      EV +K++A  +   + Y  SG  P     
Sbjct: 6  IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
          P ILG E +GIVE VG+GV   K  + V
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTV 89

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 4  VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
          ++CK    W  G+P  +E   V  P      EV +K++A  +   + Y  SG  P     
Sbjct: 5  IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 60
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
          P ILG E +GIVE VG+GV   K  + V
Sbjct: 61 PVILGHEGAGIVESVGEGVTKLKAGDTV 88

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 4  VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
          ++CK    W  G+P  +E   V  P      EV +K++A  +   + Y  SG  P     
Sbjct: 6  IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
          P ILG E +GIVE VG+GV   K  + V
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTV 89

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++AAGI   + ++ SG    +  LP ILG E +GIVE VG+GV   K
Sbjct: 35 EVRIKMVAAGICRSDEHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 4  VQCK-----RWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
          ++CK     + G P  +E   V  P  C   EV ++V+A  + P +      +   L   
Sbjct: 7  IKCKAAIAWKTGSPLCIEEIEVSPPKAC---EVRIQVIATCVCPTDINATDPKKKAL--F 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFK 81
          P +LG E +GIVE VG GV +FK
Sbjct: 62 PVVLGHECAGIVESVGPGVTNFK 84

>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From Bacillus Thuringiensis Length = 340

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 4  VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILG 63
          +Q  ++G P+ +         P  D+EV V+++   INP +    +G Y +   LP I G
Sbjct: 8  IQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPG 67
Query: 64 TEVSGIVEEVGQGV 77
           E  GIVE VG  V
Sbjct: 68 YEGVGIVENVGAFV 81

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 20 VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
          +D P P +  E+LVK+ +  +NPV+T  R     ++   P +LG +  G+VE VG  V  
Sbjct: 25 LDIPEPKVH-EILVKIQSISVNPVDTKQR---LMDVSKAPRVLGFDAIGVVESVGNEVTM 80
Query: 80 FKVKNIVRSSKS 91
          F   +IV  S S
Sbjct: 81 FNQGDIVYYSGS 92

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 1  MLAVQCKRWG-EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN---LP 56
          M AV  K+ G +  V E   V  PGP    +V ++  A G+N ++TY R+G  P+   + 
Sbjct: 3  MAAVIHKKGGPDNFVWEEVKVGSPGP---GQVRLRNTAIGVNFLDTYHRAG-IPHPLVVG 58
Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKV 82
          + P ++G E + +VEEVG GV  F V
Sbjct: 59 EPPIVVGFEAAAVVEEVGPGVTDFTV 84

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K
Sbjct: 35 EVRIKMVAVGICHTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 4  VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETY-IRSGQYPNLPD 57
          ++CK    W   +P V+E   VD P     +E+ +K++A G+   + Y +  G++ +   
Sbjct: 7  IKCKAAVAWEANKPLVIEEIEVDVPHA---NEIRIKIIATGVCHTDLYHLFEGKHKD--G 61
Query: 58 LPAILGTEVSGIVEEVGQGVKHFK 81
           P +LG E +GIVE VG GV  F+
Sbjct: 62 FPVVLGHEGAGIVESVGPGVTEFQ 85

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K
Sbjct: 35 EVRIKMVAVGICRTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K
Sbjct: 35 EVRIKMVAVGICGTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K
Sbjct: 35 EVRIKMVAVGICRTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 1  MLAVQCKRWG-EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR---SGQYPNLP 56
          M AVQ    G EP V+++ T   PGP    E+L+KV AAG+   + ++    + QY    
Sbjct: 1  MKAVQYTEIGSEPVVVDIPT-PTPGP---GEILLKVTAAGLCHSDIFVMDMPAAQYAY-- 54
Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
           LP  LG E  G V E+G+GV  F V + V
Sbjct: 55 GLPLTLGHEGVGTVAELGEGVTGFGVGDAV 84

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
          EV +K++A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K
Sbjct: 35 EVRIKMVAVGICGTDDHVVSGTM--VTPLPVILGHEAAGIVESVGEGVTTVK 84

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 17  LTTVDKP---GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV 73
           L  VD+P    P  D EV + + AAG+N  +  I  G YP +    A LG+E +G+V E 
Sbjct: 224 LALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGV----ASLGSEGAGVVVET 279
Query: 74  GQGV 77
           G GV
Sbjct: 280 GPGV 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-29
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-29
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	3e-29
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	6e-29
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	5e-28
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-28
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-27
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-27
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-27
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	5e-27
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	3e-26
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	3e-26
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	4e-25
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	8e-25
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-24
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-24
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	4e-24
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-24
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-23
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	5e-21
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	6e-20
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	4e-18
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	8e-18
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-16
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-16
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	5e-16
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-15
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-15
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-15
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-14
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	3e-14
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	3e-14
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-14
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	7e-14
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	4e-13
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	5e-13
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	4e-12
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-11
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	3e-11
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	3e-11
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	4e-11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	5e-11
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	7e-11
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-10
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-10
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-10
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	7e-10
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	8e-10
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	8e-09
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	9e-09
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	5e-05
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	5e-05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	5e-05
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	9e-05
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-04
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	1e-04
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	6e-04

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  106 bits (268), Expect = 1e-29
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 1  MLAVQCKRWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
             +Q  ++G P+ VL++   +      D+EV V+++   INP +    +G Y +   LP
Sbjct: 5  GKLIQFHKFGNPKDVLQVEYKNIEPL-KDNEVFVRMLVRPINPSDLIPITGAYAHRIPLP 63

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
           I G E  GIVE VG  V    +
Sbjct: 64 NIPGYEGVGIVENVGAFVSRELI 86

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  106 bits (267), Expect = 1e-29
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 1   MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
           M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct: 30  MRAVRVFEFGGPEVLKLRSDIAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 88

Query: 60  AILGTEVSGIVEEVGQGVKHFKV 82
              G++V+G++E VG     FK 
Sbjct: 89  YTPGSDVAGVIEAVGDNASAFKK 111

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  105 bits (265), Expect = 3e-29
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 1   MLAVQCKRWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
           + A+     G+P  V+EL  ++        +V VK++AA INP +  +  G Y  LP+LP
Sbjct: 27  VRALVYGHHGDPAKVVELKNLELAAV-RGSDVRVKMLAAPINPSDINMIQGNYGLLPELP 85

Query: 60  AILGTEVSGIVEEVGQGVKHFKV 82
           A+ G E    V  VG  V   K 
Sbjct: 86  AVGGNEGVAQVVAVGSNVTGLKP 108

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  104 bits (261), Expect = 6e-29
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY----PNLP 56
          M A+Q  ++G P+VL+L     P     +++L+KV AA +NP++   R+G          
Sbjct: 7  MKAIQFDQFGPPKVLKLVDTPTPEY-RKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKN 65

Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKV 82
          +LP+ LG + SG V E+G  V +  +
Sbjct: 66 NLPSGLGYDFSGEVIELGSDVNNVNI 91

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  102 bits (256), Expect = 5e-28
 Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
             +Q    G P VLE    +   P     V+V+  A G+N ++TY RSG YP  P LP+
Sbjct: 2  AKRIQFSTVGGPEVLEYVDFEPEAPG-PQAVVVRNKAIGLNFIDTYYRSGLYP-APFLPS 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
           LG E +G+VE VG  V  FKV
Sbjct: 60 GLGAEGAGVVEAVGDEVTRFKV 81

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  102 bits (256), Expect = 5e-28
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP-DLP 59
          M+A   +    P VL      +P P    +VLV++ A+G NP++  IR+G+ P+    LP
Sbjct: 8  MIAAVVEEANGPFVLRKLARPQPAP---GQVLVQIEASGTNPLDAKIRAGEAPHAQQPLP 64

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
          AILG +++G V  VG  V  F+V
Sbjct: 65 AILGMDLAGTVVAVGPEVDSFRV 87

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  101 bits (254), Expect = 1e-27
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV    +G    L L     P P  D E+ ++V A G+N ++  +R G   N P  P 
Sbjct: 4  MRAVVLAGFGGLNKLRLFRKAMPEPQ-DGELKIRVKACGLNFIDLMVRQGNIDNPPKTPL 62

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          + G E SGIVE +G  VK +++
Sbjct: 63 VPGFECSGIVEALGDSVKGYEI 84

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  100 bits (251), Expect = 2e-27
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
             ++  + G P VL+        P  ++E+ V+  A GIN ++TYIRSG YP  P LP+
Sbjct: 2  ATRIEFHKHGGPEVLQAVEFTPADPA-ENEIQVENKAIGINFIDTYIRSGLYP-PPSLPS 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
           LGTE +GIV +VG GVKH K 
Sbjct: 60 GLGTEAAGIVSKVGSGVKHIKA 81

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  100 bits (252), Expect = 2e-27
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 1   MLAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL---- 55
            +A    ++G+  VL  T  +  P     +EV+VKV AA +NP++  +RSG         
Sbjct: 22  SMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMK 81

Query: 56  ----------PDLPAILGTEVSGIVEEVGQGVKHFKV 82
                      + P  LG +VSG+V E G  VK+FK 
Sbjct: 82  RDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKP 118

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 99.6 bits (249), Expect = 5e-27
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
             +     G   V++      P    ++E+L+K    G+N +E+Y R G YP   + P 
Sbjct: 9  QKVILIDEIGGYDVIKYEDYPVPSIS-EEELLIKNKYTGVNYIESYFRKGIYP--CEKPY 65

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          +LG E SG V   G+GV +F+V
Sbjct: 66 VLGREASGTVVAKGKGVTNFEV 87

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 97.7 bits (244), Expect = 3e-26
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           M  V  K +G P V+ +     P    + EVLV+  A G+N  +   R G YP   D   
Sbjct: 29  MRFVDLKSFGGPDVMVIGKRPLPVAG-EGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASP 87

Query: 61  ILGTEVSGIVEEVGQGVKHFKV 82
           ILG E+SG +  VG GV  + V
Sbjct: 88  ILGLELSGEIVGVGPGVSGYAV 109

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 96.9 bits (242), Expect = 3e-26
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 1  MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M   Q   +      + L +VD P     D++LV+  A GINPV+         N     
Sbjct: 2  MEQHQVWAYQTKTHSVTLNSVDIPAL-AADDILVQNQAIGINPVDWKFIKANPINWS-NG 59

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
           + G + +G++ +VG  V    +
Sbjct: 60 HVPGVDGAGVIVKVGAKVDSKML 82

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 94.6 bits (236), Expect = 4e-25
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DL 58
          ++A    + G P       V    P    +V ++  A G+N ++TY R+G    L   + 
Sbjct: 2  VMAAVIHKKGGPDNFVWEEVKVGSPG-PGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP 60

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P ++G E + +VEEVG GV  F V
Sbjct: 61 PIVVGFEAAAVVEEVGPGVTDFTV 84

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 93.8 bits (234), Expect = 8e-25
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV  +  G P VLE+  +  P P    EV V++ AA +N ++ ++R G       LP 
Sbjct: 1  MRAVVMRARGGPEVLEVADLPVPEPG-PKEVRVRLKAAALNHLDVWVRKGVASPKLPLPH 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          +LG + SG+V+ VG GV+ F  
Sbjct: 60 VLGADGSGVVDAVGPGVEGFAP 81

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 93.4 bits (233), Expect = 1e-24
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           M A+Q +    P  L  T V+ PG    + V+V V AAG+   +  +  G+Y    + P 
Sbjct: 22  MKAIQAQSLSGPEGLVYTDVETPGA-GPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPF 80

Query: 61  ILGTEVSGIVEEVGQGVKHFKV 82
           + G E +G+V    +G    K 
Sbjct: 81  VPGIETAGVVRSAPEGS-GIKP 101

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 92.4 bits (230), Expect = 3e-24
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 1   MLAVQCKRWG---EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
           M AV   +     +   L    + KP P    ++LV+V A  +NPV+  +R    P+   
Sbjct: 23  MKAVGYNKPAPITDDASLLDIELPKPAP-AGHDILVEVKAVSVNPVDYKVRRSTPPDGT- 80

Query: 58  LPAILGTEVSGIVEEVGQGVKHFKV 82
              ++G + +GIV  VG  V  F+ 
Sbjct: 81  DWKVIGYDAAGIVSAVGPDVTLFRP 105

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 91.9 bits (229), Expect = 4e-24
 Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 1   MLAVQCKRWGEP------------RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR 48
           M A+     G                LE   +  P P    +VL+KV  A INP +    
Sbjct: 11  MKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPG-PSQVLIKVNLASINPSDVAFI 69

Query: 49  SGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKV 82
            GQY          G E  G +   G        V
Sbjct: 70  KGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLV 104

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 92.1 bits (229), Expect = 5e-24
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 1  MLAVQCKRWGEPR-VLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
            AV   + GEP+ VL   + +     L  +EV+VK + + +NP +     G YP+ P  
Sbjct: 4  AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 59 ---------PAILGTEVSGIVEEVGQGVKHFKV 82
                    A  G E    V +VG  V   + 
Sbjct: 64 TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEA 96

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 90.0 bits (224), Expect = 2e-23
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 1  MLAVQCKRW---GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
          + A+  ++     +  + +   +D P P    E+LVK+ +  +NPV+T  R         
Sbjct: 3  LKAIGFEQPFKLSDGNLFKTFNLDIPEPK-VHEILVKIQSISVNPVDTKQRLMDV---SK 58

Query: 58 LPAILGTEVSGIVEEVGQGVKHFKV 82
           P +LG +  G+VE VG  V  F  
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQ 83

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           MLAV   + G P  L +  V KP P  + EVL+KV A+ +N  +   R GQY   P    
Sbjct: 23  MLAVHFDKPGGPENLYVKEVAKPSPG-EGEVLLKVAASALNRADLMQRQGQYDPPPGASN 81

Query: 61  ILGTEVSGIVEEVGQGVK-HFKV 82
           ILG E SG V E+G G + H+K+
Sbjct: 82  ILGLEASGHVAELGPGCQGHWKI 104

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 83.8 bits (208), Expect = 5e-21
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
           M     +    P  L+L     P    + +++V+ +A  +N  +  +           P 
Sbjct: 28  MQEWSTETVA-PHDLKLAERPVPEAG-EHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPF 85

Query: 61  ILGTEVSGIVEEVGQGVKHFKV 82
           +  +++SG+VE VG+ V  F+ 
Sbjct: 86  VPASDMSGVVEAVGKSVTRFRP 107

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 80.9 bits (200), Expect = 6e-20
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A+      E  V              D+V V+V A  INP +T +R           A
Sbjct: 12 QTALTVNDHDEVTVWNAAPCPMLPR---DQVYVRVEAVAINPSDTSMRGQ----FATPWA 64

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
           LGT+ +G V  VG  V H +V
Sbjct: 65 FLGTDYAGTVVAVGSDVTHIQV 86

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 75.3 bits (186), Expect = 4e-18
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   KR G P  LEL  + +P    + EV+++V A G+N  +  +R G Y      P 
Sbjct: 1  MKAWVLKRLGGP--LELVDLPEPEA-EEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPF 57

Query: 61 ILGTEVSGIVEEVGQGV 77
          I G EV G+V   G+  
Sbjct: 58 IPGMEVVGVV--EGRRY 72

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 75.0 bits (185), Expect = 8e-18
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 1   MLAVQCKRWGE---PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
           M  +   R        V        P P  D ++LV+    G+N  +    +G+Y     
Sbjct: 24  MQKLVVTRLSPNFREAVTLSRDCPVPLPG-DGDLLVRNRFVGVNASDINYSAGRYDPSVK 82

Query: 58  LPAILGTEVSGIVEEVGQGVK-HFKVKNIV 86
            P  +G E  G V  +G      + V   V
Sbjct: 83  PPFDIGFEGIGEVVALGLSASARYTVGQAV 112

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 71.8 bits (176), Expect = 1e-16
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 19/100 (19%)

Query: 1   MLAVQCKRWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGIN----------------PV 43
           M A    R  +PR  + L  V  P      E LV VMA+ +N                 +
Sbjct: 43  MFAGLETRDKDPRKSIHLDDVPVPEL-GPGEALVAVMASSVNYNSVHTSIFEPLSTFGFL 101

Query: 44  ETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVKHFKV 82
           E Y R        DLP  ++G++++G+V   G GV  ++ 
Sbjct: 102 ERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQA 141

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 71.1 bits (174), Expect = 2e-16
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 29/101 (28%)

Query: 10  GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP---------------- 53
                L L ++D P P   DEVL+++ A+ +NP +  +  G                   
Sbjct: 15  SGELELSLDSIDTPHPG-PDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVT 73

Query: 54  ------------NLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
                          D    +G E +G+V E G       +
Sbjct: 74  ARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQAL 114

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 70.0 bits (172), Expect = 5e-16
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL--PDL 58
          + A +   + +P  L +  VD P      +V+V++  AG+   + ++  G +  L  P L
Sbjct: 16 LKAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKL 73

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P  LG E  G +EEV +GV+  + 
Sbjct: 74 PYTLGHENVGYIEEVAEGVEGLEK 97

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL----- 55
          M AV+    G+P  L L  +  P P    +VL+KV AAG+   + ++R G++ NL     
Sbjct: 1  MRAVRLVEIGKP--LSLQEIGVPKP-KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 56 --PDLPAILGTEVSGIVEEVGQGVKHFKV 82
              LP  LG E++G +EEVG  V  +  
Sbjct: 58 LGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 29/110 (26%)

Query: 1   MLAVQCKRW-----------GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS 49
            LA+  +                + L L  V  P     DEVLV VMA+ IN    +   
Sbjct: 25  YLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELA-PDEVLVAVMASSINYNTVWSAM 83

Query: 50  GQY-----------------PNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
            +                          +LG++ SG+V   G GV+ +K 
Sbjct: 84  FEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKP 133

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 68.3 bits (168), Expect = 2e-15
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G    L+   + +P     DEVLVKV+A G+   +  +R  +YP    LPA+LG E SGI
Sbjct: 16 GADFELQALKIRQPQG---DEVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGI 70

Query: 70 VEEVGQGVKHFKV 82
          +E +G  V   +V
Sbjct: 71 IEAIGPNVTELQV 83

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD-LP 59
          M AVQ    G   V+       PGP    E+L+KV AAG+   + ++           LP
Sbjct: 1  MKAVQYTEIGSEPVVVDIPTPTPGP---GEILLKVTAAGLCHSDIFVMDMPAAQYAYGLP 57

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
            LG E  G V E+G+GV  F V
Sbjct: 58 LTLGHEGVGTVAELGEGVTGFGV 80

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G+P  +E   V  P      EV +K++A  +   + Y  SG  P     P ILG   +GI
Sbjct: 16 GKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGI 71

Query: 70 VEEVGQGVKHFKV 82
          VE VG+GV   K 
Sbjct: 72 VESVGEGVTKLKA 84

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 65.3 bits (160), Expect = 3e-14
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
          G P  +E   V  P      EV ++V+A  + P +      +       P +LG E +GI
Sbjct: 18 GSPLCIEEIEVSPPKA---CEVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGI 72

Query: 70 VEEVGQGVKHFKV 82
          VE VG GV +FK 
Sbjct: 73 VESVGPGVTNFKP 85

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 64.9 bits (159), Expect = 3e-14
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
           +P  LE  TV  P      EV +K++A+GI   ++ +     P     P ILG E  G+
Sbjct: 19 HKPLSLETITVAPPKA---HEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGV 73

Query: 70 VEEVGQGVKHFKV 82
          VE +G GV   K 
Sbjct: 74 VESIGAGVTCVKP 86

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 64.5 bits (158), Expect = 4e-14
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
          M +V         ++ +     P     DEV VK+ ++G+  + +    ++G +      
Sbjct: 1  MKSV---VNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHY----Y 53

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P  LG E SG ++ VG GV     
Sbjct: 54 PITLGHEFSGYIDAVGSGVDDLHP 77

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 64.2 bits (157), Expect = 7e-14
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A+  +++ +P  L     +         +LV++++AG+   + ++  G+ P +P LP 
Sbjct: 18 AHAMVLEKFNQP--LVYKEFEISDI-PRGSILVEILSAGVCGSDVHMFRGEDPRVP-LPI 73

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNI 85
          ILG E +G V EV    +    + +
Sbjct: 74 ILGHEGAGRVVEVNGEKRDLNGELL 98

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 61.9 bits (151), Expect = 4e-13
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M AV   R      + +  V  P     D++LVKV A GI   + ++  G++P     P 
Sbjct: 24 MKAV---RLESVGNISVRNVGIP-EPGPDDLLVKVEACGICGTDRHLLHGEFP--STPPV 77

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
           LG E  GIV E G  V+    
Sbjct: 78 TLGHEFCGIVVEAGSAVRDIAP 99

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 61.5 bits (150), Expect = 5e-13
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD-LP 59
            A   K++ EP  L +  V+ P P   +EVL+++  AG+   +  +  G        LP
Sbjct: 4  SKAALLKKFSEP--LSIEDVNIPEP-QGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60

Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
           ILG E +G + EVG+ +   K 
Sbjct: 61 IILGHENAGTIVEVGE-LAKVKK 82

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 58.8 bits (143), Expect = 4e-12
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
           +P  +E   V  P      EV +K++A GI   + ++ SG       LP I G E +GI
Sbjct: 18 KKPFSIEEVEVAPPKA---HEVRIKMVATGICRSDDHVVSGTLV--TPLPVIAGHEAAGI 72

Query: 70 VEEVGQGVKHFKV 82
          VE +G+GV   + 
Sbjct: 73 VESIGEGVTTVRP 85

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 56.8 bits (138), Expect = 2e-11
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLAVQCKRWGEPRV-LELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPD 57
          M+A+      +P    EL  VD P      EVL+KV+A  I    +  Y  +    +   
Sbjct: 5  MVAI---MKTKPGYGAELVEVDVP-KPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIK 60

Query: 58 LPAILGTEVSGIVEEVGQGVKHFKV 82
           P I+G EV+G V E+G GV+  +V
Sbjct: 61 PPQIMGHEVAGEVVEIGPGVEGIEV 85

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 9  WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEV 66
          W       L +V K     + EV V V + GI  + V  +      P + +   +LG E 
Sbjct: 21 WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHES 80

Query: 67 SGIVEEVGQGVKHFKV 82
          +G V  V   VK  KV
Sbjct: 81 AGEVIAVHPSVKSIKV 96

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
           +P V+E   VD P     +E+ +K++A G+   + Y            P +LG E +GI
Sbjct: 18 NKPLVIEEIEVDVPHA---NEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGI 73

Query: 70 VEEVGQGVKHFKV 82
          VE VG GV  F+ 
Sbjct: 74 VESVGPGVTEFQP 86

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   +++ EP  L++  V+KP      EVLV++ A G+   + +   G +P  P LP 
Sbjct: 1  MKAAVVEQFKEP--LKIKEVEKPTI-SYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          I G E  GIVEEVG GV H KV
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKV 79

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 56.1 bits (136), Expect = 5e-11
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
           L+       +   L L     P    +DEVL+++   GI  + V  Y        +   
Sbjct: 5  NLSA---VLYKQNDLRLEQRPIP-EPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKD 60

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P ++G E SG V +VG+ VKH K 
Sbjct: 61 PMVIGHEASGTVVKVGKNVKHLKK 84

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 55.5 bits (134), Expect = 7e-11
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 1   MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI------NPVETYIRSGQYPN 54
            L  +  R      + +  V +P      E+++KV A GI                 YP 
Sbjct: 31  WLGSKVWR---YPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPG 87

Query: 55  LPDLPAILGTEVSGIVEEVGQGV------KHFKV 82
           L   P  LG E SG+V E G         K F++
Sbjct: 88  LTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEI 121

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   + +G P  L +  V  P P    +V VK+ A+G+   + +   G +P  P LP 
Sbjct: 3  MKAAVVRAFGAP--LTIDEVPVPQP-GPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPF 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          I G E  G V  VG GV   K 
Sbjct: 60 IPGHEGVGYVSAVGSGVSRVKE 81

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 21  DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80
               P  D EV + + AAG+N  +  I  G YP      A LG+E +G+V E G GV   
Sbjct: 231 TATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGL 286

Query: 81  KV 82
             
Sbjct: 287 AP 288

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
          M A+      E   L L     P P    E+LV+V AA I    +  +            
Sbjct: 1  MRALAKLAPEEG--LTLVDRPVPEP-GPGEILVRVEAASICGTDLHIWKWDAWARGRIRP 57

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P + G E SG+VE VG GV+  +V
Sbjct: 58 PLVTGHEFSGVVEAVGPGVRRPQV 81

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 52.6 bits (127), Expect = 7e-10
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
           L++       P  L L     P P   +EVL+++ + GI  + V  +        +   
Sbjct: 8  NLSL---VVHGPGDLRLENYPIPEP-GPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKK 63

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
          P +LG E SG VE+VG  VKH K 
Sbjct: 64 PMVLGHEASGTVEKVGSSVKHLKP 87

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 52.4 bits (126), Expect = 8e-10
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI-----------NPVETYIRS 49
          M A+  K       +++  VD+       ++ ++ +  GI             + T  + 
Sbjct: 1  MKAIIVKPPNAG--VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPK- 57

Query: 50 GQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
                     +LG E  G+VEE   G  
Sbjct: 58 ------GKDFLVLGHEAIGVVEESYHGFS 80

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 49.6 bits (119), Expect = 8e-09
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
          M A+  KR        +    +P P    E LV+ +  G+     E            + 
Sbjct: 1  MKAIAVKR--GEDRPVVIEKPRPEP-ESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGED 57

Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
            +LG E  G+V +        + 
Sbjct: 58 HLVLGHEAVGVVVDP--NDTELEE 79

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
             V          LE   +  P P   +E+L+ V  +G+   + +   G +P    LP 
Sbjct: 6  QKGVIFYESHGK--LEYKDIPVPKP-KANELLINVKYSGVCHTDLHAWHGDWPLPVKLPL 62

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          + G E +G+V  +G+ VK +K+
Sbjct: 63 VGGHEGAGVVVGMGENVKGWKI 84

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M             +     +KP      + +V+ +A      + +              
Sbjct: 1  MKGF---AMLSIGKVGWIEKEKP-APGPFDAIVRPLAVAPCTSDIHTVFEGAIGERH-NM 55

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          ILG E  G V EVG  VK FK 
Sbjct: 56 ILGHEAVGEVVEVGSEVKDFKP 77

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
                  ++V +++   G+  + +   +RS         P + G E+ G V  VG  V+ 
Sbjct: 41  TRREPGPNDVKIEIAYCGVCHSDLHQ-VRSEWAG--TVYPCVPGHEIVGRVVAVGDQVEK 97

Query: 80  FKV 82
           +  
Sbjct: 98  YAP 100

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKP------GPCLDDEVLVKVMAAGINPVETYIRSGQYPN 54
             V    +     +E+  +D P      G  ++  V++KV++  I   + ++  G+   
Sbjct: 3  NRGVV---YLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA 59

Query: 55 LPDLPAILGTEVSGIVEEVGQGVKHFKV 82
             L  +LG E++G V E G+ V++ ++
Sbjct: 60 QVGL--VLGHEITGEVIEKGRDVENLQI 85

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 38.3 bits (90), Expect = 9e-05
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
                  +VL+ ++ AGI  + + +   S         P I G E++GI++EVG+GVK 
Sbjct: 23 SRHAVGPRDVLIDILYAGICHSDIHS-AYSEWKE--GIYPMIPGHEIAGIIKEVGKGVKK 79

Query: 80 FKV 82
          FK+
Sbjct: 80 FKI 82

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
                 ++V ++++  GI    +    ++       + P + G EV G V EVG  V  
Sbjct: 28 TLRETGPEDVNIRIICCGICHTDLHQ-TKNDLGM--SNYPMVPGHEVVGEVVEVGSDVSK 84

Query: 80 FKV 82
          F V
Sbjct: 85 FTV 87

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 32/98 (32%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKP-----GPCLDDEVLVKVMAA-----------GINPVE 44
            +V    +   R L + TV  P        L+  V++KV++            G   V 
Sbjct: 3  NKSVV---YHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVP 59

Query: 45 TYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
                          +LG E++G V E G  V+   +
Sbjct: 60 K-------------GHVLGHEITGEVVEKGSDVELMDI 84

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 35.6 bits (83), Expect = 6e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSG----QYPNLPDLPAILGTEVSGIVEEVGQ 75
                +++V  KV+  G+  + + + I++      YP +P      G E+ G V EVG 
Sbjct: 35 SRRATGEEDVRFKVLYCGVCHSDLHS-IKNDWGFSMYPLVP------GHEIVGEVTEVGS 87

Query: 76 GVKHFKV 82
           VK   V
Sbjct: 88 KVKKVNV 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.91
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.91
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.91
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.91
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.91
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.91
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.9
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.9
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.9
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.9
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.9
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.9
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.9
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.9
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.9
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.9
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.9
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.89
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.89
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.89
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.89
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.89
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.89
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.89
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.89
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.89
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.88
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.88
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.88
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.88
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.88
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.88
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.88
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.88
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.88
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.88
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.88
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.88
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.87
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.87
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.87
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.87
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.87
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.87
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.87
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.86
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.86
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.86
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.86
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.86
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.86
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.86
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.86
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.85
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.85
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.85
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.85
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.84
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.84
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.83
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.82
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.81
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.81
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.8
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.79
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.74
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.74
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.69
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.69
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.41
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	93.52
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	93.2
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	91.31
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	89.97
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	89.78

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.91  E-value=6.2e-24  Score=139.60  Aligned_cols=88  Identities=35%  Similarity=0.494  Sum_probs=82.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.++++++.+++++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|+|++|+|+++|+++++|
T Consensus        29 MkA~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~  107 (353)
T 4dup_A           29 MRFVDLKSFGGPDVMVIGKRPLPV-AGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGY  107 (353)
T ss_dssp             EEEEEESSSSSGGGEEEEEECCCC-CCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTTCCSC
T ss_pred             eeEEEEccCCCccceEEEeccCCC-CCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCCCCCC
Confidence            899999999988899999999999 9999999999999999999999999876555678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus       108 ~vGdrV~~~  116 (353)
T 4dup_A          108 AVGDKVCGL  116 (353)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.91  E-value=7e-24  Score=139.08  Aligned_cols=88  Identities=33%  Similarity=0.480  Sum_probs=82.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..+++++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|
T Consensus         4 mka~~~~~~g~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~   82 (349)
T 4a27_A            4 MRAVVLAGFGGLNKLRLFRKAMPE-PQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGY   82 (349)
T ss_dssp             EEEEEECSSSSGGGEEEEEECCCC-CCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCSC
T ss_pred             eEEEEEccCCCcceeEEEecCCCC-CCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCCC
Confidence            899999999988889999999999 9999999999999999999999999876556789999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+++
T Consensus        83 ~~GdrV~~~   91 (349)
T 4a27_A           83 EIGDRVMAF   91 (349)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999999875

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.91  E-value=8.7e-24  Score=137.47  Aligned_cols=87  Identities=39%  Similarity=0.568  Sum_probs=81.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.++++++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   79 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEA-PGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRF   79 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCC-CCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cEEEEEecCCCcceeEEeecCCCC-CCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCC
Confidence            899999999999999999999999 99999999999999999999999997754 4678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        80 ~~GdrV~~~   88 (325)
T 3jyn_A           80 KVGDRVAYG   88 (325)
T ss_dssp             CTTCEEEES
T ss_pred             CCCCEEEEe
Confidence            999999864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.91  E-value=2e-23  Score=136.50  Aligned_cols=85  Identities=21%  Similarity=0.316  Sum_probs=76.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++... .+..+++++.|.|+ +++|||||||+++|||++|++++.|.++  .++|.++|||++|+|+++|++++.|
T Consensus         1 MKA~v~~~~-~~~~~~l~e~~~P~-~~p~eVLVkv~a~gic~~D~~~~~G~~~--~~~p~i~GhE~aG~V~~vG~~V~~~   76 (348)
T 4eez_A            1 MKAAVVRHN-PDGYADLVEKELRA-IKPNEALLDMEYCGVCHTDLHVAAGDFG--NKAGTVLGHEGIGIVKEIGADVSSL   76 (348)
T ss_dssp             CEEEEECSS-CCSSEEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHTTTTC--CCTTCBCCSEEEEEEEEECTTCCSC
T ss_pred             CeEEEEEcC-CCCcEEEEEeECCC-CCCCEEEEEEEEEEECHHHHHHhcCCCC--CCCCcccceeEEEEEEEECceeeec
Confidence            999998643 33458999999999 9999999999999999999999999765  3678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        77 ~~GdrV~~~   85 (348)
T 4eez_A           77 QVGDRVSVA   85 (348)
T ss_dssp             CTTCEEEEE
T ss_pred             ccCCeEeec
Confidence            999999764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.91  E-value=1.4e-23  Score=137.50  Aligned_cols=87  Identities=29%  Similarity=0.396  Sum_probs=81.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..+++++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|++++ |
T Consensus        22 MkA~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~-~   99 (342)
T 4eye_A           22 MKAIQAQSLSGPEGLVYTDVETPG-AGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-I   99 (342)
T ss_dssp             EEEEEECSSSGGGGEEEEEEECCC-CCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTSS-C
T ss_pred             eEEEEEecCCCCceeEEEeCCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCCC-C
Confidence            899999999989889999999999 99999999999999999999999998765557899999999999999999999 9


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+++
T Consensus       100 ~vGDrV~~~  108 (342)
T 4eye_A          100 KPGDRVMAF  108 (342)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999999875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.91  E-value=1.8e-23  Score=137.83  Aligned_cols=87  Identities=22%  Similarity=0.337  Sum_probs=80.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.++ +++.+++++.+.|+ +++|||+|||++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|
T Consensus        28 mkA~~~~~~-~~~~l~~~e~p~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~  105 (363)
T 3uog_A           28 MQEWSTETV-APHDLKLAERPVPE-AGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRF  105 (363)
T ss_dssp             EEEEEBSCT-TTTCCEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             hEEEEEccC-CCCCcEEEeeeCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCCCC
Confidence            799999987 56779999999999 9999999999999999999999998776555789999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus       106 ~vGDrV~~~  114 (363)
T 3uog_A          106 RPGDRVIST  114 (363)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEe
Confidence            999999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.90  E-value=2.4e-23  Score=135.77  Aligned_cols=86  Identities=31%  Similarity=0.517  Sum_probs=80.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.++++++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++  ..+|.++|||++|+|+++|+++++|
T Consensus         9 mka~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~P~i~G~e~~G~V~~vG~~v~~~   85 (334)
T 3qwb_A            9 QKVILIDEIGGYDVIKYEDYPVPS-ISEEELLIKNKYTGVNYIESYFRKGIYP--CEKPYVLGREASGTVVAKGKGVTNF   85 (334)
T ss_dssp             EEEEEESSSSSGGGEEEEEEECCC-CCTTEEEEEEEEEECCTTHHHHHHTSSC--CCSSEECCSEEEEEEEEECTTCCSC
T ss_pred             eEEEEEecCCCCceeEEEeccCCC-CCCCEEEEEEEEEecCHHHHHHHCCCCC--CCCCCccccceEEEEEEECCCCCCC
Confidence            899999999888889999999999 9999999999999999999999998765  3578999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+++
T Consensus        86 ~~GdrV~~~   94 (334)
T 3qwb_A           86 EVGDQVAYI   94 (334)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999999864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.90  E-value=4e-23  Score=135.14  Aligned_cols=87  Identities=34%  Similarity=0.508  Sum_probs=79.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.++.+++++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~   79 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPE-PGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGF   79 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSC
T ss_pred             CeEEEEecCCCCceEEEEecCCCC-CCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCC
Confidence            999999998877779999999999 9999999999999999999999998765334678999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||+.
T Consensus        80 ~vGdrV~~   87 (343)
T 2eih_A           80 APGDEVVI   87 (343)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999984

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.90  E-value=1.2e-23  Score=137.53  Aligned_cols=88  Identities=31%  Similarity=0.402  Sum_probs=81.5

Q ss_pred             CeEEEEcccCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++.+++.+ +.+++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++
T Consensus         5 mka~~~~~~g~p~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~   83 (340)
T 3gms_A            5 GKLIQFHKFGNPKDVLQVEYKNIEP-LKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSR   83 (340)
T ss_dssp             EEEEEESSCSCHHHHEEEEEEECCC-CCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSCG
T ss_pred             cEEEEEecCCCchheEEEEecCCCC-CCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCCC
Confidence            799999999887 679999999999 999999999999999999999999987655578999999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||+++
T Consensus        84 ~~vGdrV~~~   93 (340)
T 3gms_A           84 ELIGKRVLPL   93 (340)
T ss_dssp             GGTTCEEEEC
T ss_pred             CCCCCEEEec
Confidence            9999999865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.90  E-value=4.7e-23  Score=135.46  Aligned_cols=88  Identities=39%  Similarity=0.560  Sum_probs=79.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC-CC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV-KH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~-~~   79 (91)
                      ||++++..++.++.+++++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++ ++
T Consensus        23 Mka~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~  101 (354)
T 2j8z_A           23 MLAVHFDKPGGPENLYVKEVAKPS-PGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGH  101 (354)
T ss_dssp             EEEEEESSCSSGGGEEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSCC--C
T ss_pred             eeEEEEccCCCccceEEeecCCCC-CCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCCcCCC
Confidence            899999988888889999999999 9999999999999999999999998765444578999999999999999999 99


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||+++
T Consensus       102 ~~vGdrV~~~  111 (354)
T 2j8z_A          102 WKIGDTAMAL  111 (354)
T ss_dssp             CCTTCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.90  E-value=4.9e-23  Score=135.36  Aligned_cols=88  Identities=45%  Similarity=0.714  Sum_probs=80.3

Q ss_pred             CeEEEEcccCCCCceEE-EEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLEL-TTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~-~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..++.++.+++ ++.+.|+ ++++||+||+.+++||++|++.+.|.++....+|.++|+|++|+|+++|+++++
T Consensus        30 Mka~~~~~~g~~~~l~~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~  108 (351)
T 1yb5_A           30 MRAVRVFEFGGPEVLKLRSDIAVPI-PKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA  108 (351)
T ss_dssp             EEEEEESSCSSGGGEEEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             EEEEEEccCCCcceeEEeeecCCCC-CCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCCCC
Confidence            79999998888888999 8999999 999999999999999999999999876544467899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus       109 ~~vGdrV~~~  118 (351)
T 1yb5_A          109 FKKGDRVFTS  118 (351)
T ss_dssp             CCTTCEEEES
T ss_pred             CCCCCEEEEe
Confidence            9999999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.90  E-value=5.9e-23  Score=134.14  Aligned_cols=84  Identities=33%  Similarity=0.481  Sum_probs=77.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..++++  +++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|
T Consensus         3 MkA~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~   79 (340)
T 3s2e_A            3 MKAAVVRAFGAP--LTIDEVPVPQ-PGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRV   79 (340)
T ss_dssp             EEEEEBCSTTSC--CEEEEEECCC-CCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSC
T ss_pred             eEEEEEecCCCC--CEEEEccCCC-CCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcC
Confidence            899999987766  8999999999 9999999999999999999999999876555789999999999999999999999


Q ss_pred             CCCCEEE
Q psy3511          81 KVKNIVR   87 (91)
Q Consensus        81 ~~Gd~V~   87 (91)
                      ++||||.
T Consensus        80 ~vGdrV~   86 (340)
T 3s2e_A           80 KEGDRVG   86 (340)
T ss_dssp             CTTCEEE
T ss_pred             CCCCEEE
Confidence            9999994

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.90  E-value=3.8e-23  Score=134.24  Aligned_cols=88  Identities=33%  Similarity=0.528  Sum_probs=79.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC--C--CCCCCCcccccceEEEEEEeCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY--P--NLPDLPAILGTEVSGIVEEVGQG   76 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~--~--~~~~~p~~~g~e~~G~V~~vG~~   76 (91)
                      ||++++.++++++.+++++.+.|+ +++|||+||+++++||++|++.+.|..  .  ....+|.++|||++|+|+++|++
T Consensus         7 Mka~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~   85 (321)
T 3tqh_A            7 MKAIQFDQFGPPKVLKLVDTPTPE-YRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSD   85 (321)
T ss_dssp             EEEEEESSSCSGGGEEEEEEECCC-CCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTT
T ss_pred             ceEEEEccCCCcceeEEEecCCCC-CCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCC
Confidence            799999999988889999999999 999999999999999999999998831  0  12467899999999999999999


Q ss_pred             CCCCCCCCEEEee
Q psy3511          77 VKHFKVKNIVRSS   89 (91)
Q Consensus        77 ~~~~~~Gd~V~~~   89 (91)
                      +++|++||||++.
T Consensus        86 v~~~~~GdrV~~~   98 (321)
T 3tqh_A           86 VNNVNIGDKVMGI   98 (321)
T ss_dssp             CCSCCTTCEEEEE
T ss_pred             CCCCCCCCEEEEc
Confidence            9999999999876

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.90  E-value=8.9e-23  Score=133.53  Aligned_cols=86  Identities=31%  Similarity=0.401  Sum_probs=78.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-CCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-LPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      |||+++.+++.+  +++++.+.|+ +++|||+||+++++||++|++.+.|.++. ...+|.++|||++|+|+++|+++++
T Consensus         1 MkA~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   77 (345)
T 3jv7_A            1 MKAVQYTEIGSE--PVVVDIPTPT-PGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTG   77 (345)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCC-CCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCS
T ss_pred             CeEEEEcCCCCc--eEEEEecCCC-CCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCC
Confidence            999999988766  8999999999 99999999999999999999999987642 2467899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus        78 ~~vGdrV~~~   87 (345)
T 3jv7_A           78 FGVGDAVAVY   87 (345)
T ss_dssp             CCTTCEEEEC
T ss_pred             CCCCCEEEEe
Confidence            9999999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.90  E-value=5.8e-23  Score=133.89  Aligned_cols=88  Identities=30%  Similarity=0.434  Sum_probs=75.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-CCC-CCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-PNL-PDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~~~-~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++.+++.++.+++++.+.|+ +++|||+||+++++||++|++.+.|.+ +.. ..+|.++|||++|+|+++|++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGS-PGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVT   80 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCC
T ss_pred             cEEEEEcccCCcceeEEEeccCCC-CCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCC
Confidence            899999998888889999999999 999999999999999999999998865 211 35789999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||++.
T Consensus        81 ~~~~GdrV~~~   91 (333)
T 1wly_A           81 DFTVGERVCTC   91 (333)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEEe
Confidence            99999999764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.90  E-value=1.1e-22  Score=132.90  Aligned_cols=84  Identities=25%  Similarity=0.294  Sum_probs=75.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||++++.++   .++++|.|.|+.+++|||||||+++|||++|++.+.+..+  ..+|.++|||++|+|+++|+++++|
T Consensus         1 MkAvv~~~~g---~l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~--~~~P~i~G~E~~G~V~~vG~~V~~~   75 (346)
T 4a2c_A            1 MKSVVNDTDG---IVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA--HYYPITLGHEFSGYIDAVGSGVDDL   75 (346)
T ss_dssp             CEEEEECSSS---CEEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS--SSSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEecCC---CEEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC--CCCCccccEEEEEEEEEECCCcccc
Confidence            9999999655   5899999999834699999999999999999998888654  3678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|.+.
T Consensus        76 ~~GdrV~~~   84 (346)
T 4a2c_A           76 HPGDAVACV   84 (346)
T ss_dssp             CTTCEEEEC
T ss_pred             cCCCeEEee
Confidence            999999864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.90  E-value=7.2e-23  Score=132.85  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..+++++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|  +++|
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~   77 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQ-LPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRF   77 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGG-SCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTC
T ss_pred             CceEEEecCCCCceeeEeecCCCC-CCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCC
Confidence            999999999988889999999999 9999999999999999999999999876556789999999999999998  5789


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        78 ~vGdrV~~~   86 (324)
T 3nx4_A           78 HAGQEVLLT   86 (324)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEc
Confidence            999999864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.89  E-value=1.6e-22  Score=132.16  Aligned_cols=85  Identities=41%  Similarity=0.625  Sum_probs=77.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.+  +++++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~   77 (339)
T 1rjw_A            1 MKAAVVEQFKEP--LKIKEVEKPT-ISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHL   77 (339)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             CeEEEEcCCCCC--cEEEEeeCCC-CCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcC
Confidence            999999887644  8889999999 9999999999999999999999988765434678999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||++
T Consensus        78 ~vGdrV~~   85 (339)
T 1rjw_A           78 KVGDRVGI   85 (339)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999985

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.89  E-value=1.2e-22  Score=134.08  Aligned_cols=87  Identities=28%  Similarity=0.365  Sum_probs=79.1

Q ss_pred             CeEEEEccc---CCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRW---GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~---~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      |||+++.++   ++++.+++++.+.|+ ++++||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++
T Consensus        23 MkA~~~~~~~~~~~~~~l~~~~~p~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v  100 (363)
T 4dvj_A           23 MKAVGYNKPAPITDDASLLDIELPKPA-PAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGIVSAVGPDV  100 (363)
T ss_dssp             EEEEEBSSCCCTTSTTSSEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEEEEEECTTC
T ss_pred             eEEEEEeccCCCCCCceEEEeecCCCC-CCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEEEEEeCCCC
Confidence            899999988   567889999999999 99999999999999999999999987653 4678999999999999999999


Q ss_pred             CCCCCCCEEEee
Q psy3511          78 KHFKVKNIVRSS   89 (91)
Q Consensus        78 ~~~~~Gd~V~~~   89 (91)
                      ++|++||||++.
T Consensus       101 ~~~~vGdrV~~~  112 (363)
T 4dvj_A          101 TLFRPGDEVFYA  112 (363)
T ss_dssp             CSCCTTCEEEEC
T ss_pred             CCCCCCCEEEEc
Confidence            999999999875

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.89  E-value=1.4e-22  Score=132.82  Aligned_cols=85  Identities=29%  Similarity=0.418  Sum_probs=78.7

Q ss_pred             CeEEEEcccC---CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRWG---EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~~---~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      |||+++.++|   +++.+++++.+.|+ +++|||+||+++++||++|++.+.|.   ...+|.++|||++|+|+++|+++
T Consensus         3 MkA~~~~~~G~~~~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            3 LKAIGFEQPFKLSDGNLFKTFNLDIPE-PKVHEILVKIQSISVNPVDTKQRLMD---VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             EEEEEBSSCCCGGGCCCCEEEEECCCC-CCTTEEEEEEEEEEECHHHHHHTTSC---CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             cEEEEEEeccccCCCceeEeccccCCC-CCCCEEEEEEEEEEcCHHHHHHHhCC---CCCCCcCcCCccEEEEEEeCCCC
Confidence            8999999987   67889999999999 99999999999999999999998876   24678999999999999999999


Q ss_pred             CCCCCCCEEEee
Q psy3511          78 KHFKVKNIVRSS   89 (91)
Q Consensus        78 ~~~~~Gd~V~~~   89 (91)
                      ++|++||||++.
T Consensus        79 ~~~~~GdrV~~~   90 (346)
T 3fbg_A           79 TMFNQGDIVYYS   90 (346)
T ss_dssp             CSCCTTCEEEEC
T ss_pred             CcCCCCCEEEEc
Confidence            999999999875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.89  E-value=1.2e-22  Score=133.55  Aligned_cols=88  Identities=33%  Similarity=0.494  Sum_probs=78.9

Q ss_pred             CeEEEEcccCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..++.+ +.+++++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++
T Consensus        27 mka~~~~~~g~~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~  105 (357)
T 1zsy_A           27 VRALVYGHHGDPAKVVELKNLELAA-VRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTG  105 (357)
T ss_dssp             EEEEEESSSSCHHHHEEEEEECCCC-CCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTTCCS
T ss_pred             hEEEEEecCCCccceEEEeeccCCC-CCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCCCCC
Confidence            799999988765 348899999998 999999999999999999999999876544467899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus       106 ~~vGdrV~~~  115 (357)
T 1zsy_A          106 LKPGDWVIPA  115 (357)
T ss_dssp             CCTTCEEEES
T ss_pred             CCCCCEEEEc
Confidence            9999999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.89  E-value=1.9e-22  Score=132.12  Aligned_cols=86  Identities=35%  Similarity=0.584  Sum_probs=78.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCC-CCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL-PDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..++++  +++++.+.|. ++++||+||+++++||++|++.+.|..+.. ..+|.++|||++|+|+++|+++++
T Consensus         8 mka~~~~~~~~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~   84 (343)
T 3gaz_A            8 MIAAVVEEANGP--FVLRKLARPQ-PAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS   84 (343)
T ss_dssp             EEEEEECSTTCC--EEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             heEEEEecCCCc--eEEEeccCCC-CCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence            899999988776  9999999999 999999999999999999999998865322 467899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||+++
T Consensus        85 ~~vGdrV~~~   94 (343)
T 3gaz_A           85 FRVGDAVFGL   94 (343)
T ss_dssp             CCTTCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999999876

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.89  E-value=1.4e-22  Score=131.26  Aligned_cols=86  Identities=23%  Similarity=0.274  Sum_probs=78.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+  .++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         5 Mka~~~~~--~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~   80 (315)
T 3goh_A            5 HQVWAYQT--KTHSVTLNSVDIPA-LAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKVDSK   80 (315)
T ss_dssp             EEEEEEET--TTTEEEEEEEECCC-CCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTSCGG
T ss_pred             eEEEEEeC--CCCeeEEEecCCCC-CCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCCCCC
Confidence            89999986  56779999999999 99999999999999999999999987653 4688999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||||++..
T Consensus        81 ~vGdrV~~~~   90 (315)
T 3goh_A           81 MLGRRVAYHT   90 (315)
T ss_dssp             GTTCEEEEEC
T ss_pred             CCCCEEEEeC
Confidence            9999999753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.5e-22  Score=131.59  Aligned_cols=85  Identities=24%  Similarity=0.325  Sum_probs=76.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.+  +++++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|
T Consensus         6 mka~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~   82 (347)
T 2hcy_A            6 QKGVIFYESHGK--LEYKDIPVPK-PKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGW   82 (347)
T ss_dssp             EEEEEESSTTCC--CEEEEEECCC-CCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCSC
T ss_pred             cEEEEEeCCCCC--CEEEEeeCCC-CCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCCC
Confidence            899999987644  8899999999 9999999999999999999999988765334678999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||++
T Consensus        83 ~~GdrV~~   90 (347)
T 2hcy_A           83 KIGDYAGI   90 (347)
T ss_dssp             CTTCEEEE
T ss_pred             cCCCEEEE
Confidence            99999985

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.89  E-value=1.9e-22  Score=133.49  Aligned_cols=85  Identities=29%  Similarity=0.413  Sum_probs=77.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..++.+  +++++.+.|+ ++++||+|||++++||++|++.+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus         9 mkA~v~~~~~~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~P~v~GhE~~G~V~~vG~~v~~~   84 (378)
T 3uko_A            9 CKAAVAYEPNKP--LVIEDVQVAP-PQAGEVRIKILYTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV   84 (378)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEEECHHHHHHHTTCCT-TCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             eEEEEEecCCCc--cEEEEecCCC-CCCCeEEEEEEEeecCHHHHHHhcCCCC-CCCCCccCCccceEEEEEeCCCCCcC
Confidence            899999987766  8999999999 9999999999999999999999998754 34688999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        85 ~vGdrV~~~   93 (378)
T 3uko_A           85 QAGDHVIPC   93 (378)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEe
Confidence            999999865

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=2.6e-22  Score=130.48  Aligned_cols=85  Identities=42%  Similarity=0.678  Sum_probs=78.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.++.+++++.+.|+ ++++||+||+++++||++|++.+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~p~v~G~E~~G~V~~vG~~v~~~   79 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPAD-PAENEIQVENKAIGINFIDTYIRSGLYP-PPSLPSGLGTEAAGIVSKVGSGVKHI   79 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHHTSSC-CSSSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             cEEEEEcCCCChhheEEeccCCCC-CCCCEEEEEEEEEecCHHHHHHhCCCCC-CCCCCCCCCceeEEEEEEECCCCCCC
Confidence            899999998888889999999999 9999999999999999999999988764 23578999999999999999999999


Q ss_pred             CCCCEEE
Q psy3511          81 KVKNIVR   87 (91)
Q Consensus        81 ~~Gd~V~   87 (91)
                      ++||||.
T Consensus        80 ~~GdrV~   86 (327)
T 1qor_A           80 KAGDRVV   86 (327)
T ss_dssp             CTTCEEE
T ss_pred             CCCCEEE
Confidence            9999994

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.88  E-value=2.4e-22  Score=132.44  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=78.9

Q ss_pred             CeEEEEcccCCC--CceEE-EEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRWGEP--RVLEL-TTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~~~~--~~~~~-~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      ||++++..++.+  +.+++ ++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+++|+++
T Consensus        24 MkA~~~~~~g~~~~~~l~~~~~~p~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~~V  102 (362)
T 2c0c_A           24 MQKLVVTRLSPNFREAVTLSRDCPVPL-PGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSA  102 (362)
T ss_dssp             EEEEEECSCCSSHHHHEEEEEEEECCC-CCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECTTG
T ss_pred             ceEEEEeecCCCccceeEEEeecCCCC-CCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECCCc
Confidence            899999988753  56899 9999999 8999999999999999999999998764334678999999999999999999


Q ss_pred             C-CCCCCCEEEee
Q psy3511          78 K-HFKVKNIVRSS   89 (91)
Q Consensus        78 ~-~~~~Gd~V~~~   89 (91)
                      + +|++||||++.
T Consensus       103 ~~~~~vGdrV~~~  115 (362)
T 2c0c_A          103 SARYTVGQAVAYM  115 (362)
T ss_dssp             GGTCCTTCEEEEE
T ss_pred             cCCCCCCCEEEEc
Confidence            9 99999999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.88  E-value=3.4e-22  Score=130.94  Aligned_cols=84  Identities=25%  Similarity=0.390  Sum_probs=76.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++++  +++++.+.|+ ++++||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         5 mka~~~~~~~~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~v~~~   80 (348)
T 3two_A            5 SKGFAIFSKDEH--FKPHDFSRHA-VGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKGVKKF   80 (348)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             EEEEEEccCCCC--CeEEEeeCCC-CCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCC
Confidence            789998876544  9999999999 99999999999999999999999987653 4678999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||++
T Consensus        81 ~vGdrV~~   88 (348)
T 3two_A           81 KIGDVVGV   88 (348)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999975

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.88  E-value=3.1e-22  Score=131.11  Aligned_cols=86  Identities=35%  Similarity=0.543  Sum_probs=76.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-------CCCCCcccccceEEEEEEe
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-------LPDLPAILGTEVSGIVEEV   73 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-------~~~~p~~~g~e~~G~V~~v   73 (91)
                      ||++++..++.+  +++++.+.|+ ++++||+||+.+++||++|++.+.|.++.       ...+|.++|||++|+|+++
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   77 (347)
T 1jvb_A            1 MRAVRLVEIGKP--LSLQEIGVPK-PKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (347)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCC-CCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEecCCCC--eEEEEeeCCC-CCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEE
Confidence            999999987654  8899999999 99999999999999999999998876541       2367899999999999999


Q ss_pred             CCCCCCCCCCCEEEee
Q psy3511          74 GQGVKHFKVKNIVRSS   89 (91)
Q Consensus        74 G~~~~~~~~Gd~V~~~   89 (91)
                      |+++++|++||||++.
T Consensus        78 G~~v~~~~vGdrV~~~   93 (347)
T 1jvb_A           78 GDEVVGYSKGDLVAVN   93 (347)
T ss_dssp             CTTCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCCCEEEeC
Confidence            9999999999999754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.88  E-value=3.3e-22  Score=132.00  Aligned_cols=84  Identities=30%  Similarity=0.399  Sum_probs=76.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++++  +++++.+.|+ ++++||+||+++++||++|++.+.|.++  ..+|.++|||++|+|+++|+++++|
T Consensus        10 mka~~~~~~g~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~v~~~   84 (373)
T 1p0f_A           10 CKAAVAWEPHKP--LSLETITVAP-PKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCV   84 (373)
T ss_dssp             EEEEEBSSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             eEEEEEEcCCCC--eeEEEeeCCC-CCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEECCCCCcc
Confidence            799999877654  8889999998 9999999999999999999999988654  4678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        85 ~vGdrV~~~   93 (373)
T 1p0f_A           85 KPGDKVIPL   93 (373)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEC
Confidence            999999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.88  E-value=2e-22  Score=131.85  Aligned_cols=86  Identities=31%  Similarity=0.266  Sum_probs=76.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..++.+  +++++.+.|+ +++|||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2dq4_A            1 MRALAKLAPEEG--LTLVDRPVPE-PGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVR   77 (343)
T ss_dssp             CEEEEECSSSSS--CEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEeCCCCc--EEEEeccCCC-CCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCC
Confidence            999999987754  8899999999 99999999999999999999999886431  135789999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||++.
T Consensus        78 ~~~vGdrV~~~   88 (343)
T 2dq4_A           78 RPQVGDHVSLE   88 (343)
T ss_dssp             SSCTTCEEEEC
T ss_pred             cCCCCCEEEEC
Confidence            99999999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=4.3e-22  Score=131.40  Aligned_cols=84  Identities=37%  Similarity=0.542  Sum_probs=75.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++++  +++++.+.|+ ++++||+||+++++||++|++.+.|.++  ..+|.++|||++|+|+++|+++++|
T Consensus         7 mka~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~v~~~   81 (371)
T 1f8f_A            7 IIAAVTPCKGAD--FELQALKIRQ-PQGDEVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGIIEAIGPNVTEL   81 (371)
T ss_dssp             EEEEEBCSTTCC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             ceEEEEcCCCCC--eEEEEecCCC-CCCCEEEEEEEEeecCchhHHHHcCCCC--CCCCcccCcccceEEEEeCCCCCCC
Confidence            899999877654  8889999999 9999999999999999999999998654  3578999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        82 ~~GdrV~~~   90 (371)
T 1f8f_A           82 QVGDHVVLS   90 (371)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEec
Confidence            999999863

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.88  E-value=2.5e-22  Score=132.09  Aligned_cols=88  Identities=30%  Similarity=0.344  Sum_probs=76.7

Q ss_pred             CeEEEEcccCCC-CceEEEEecCCCCCC--CCeEEEEEeEEecChhHHHHHhCCCCCCCCCC---------cccccceEE
Q psy3511           1 MLAVQCKRWGEP-RVLELTTVDKPGPCL--DDEVLVKVMAAGINPVETYIRSGQYPNLPDLP---------AILGTEVSG   68 (91)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~--~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p---------~~~g~e~~G   68 (91)
                      ||++++.+++.+ +.+++++.+.|. +.  +|||+|||++++||++|++.+.|.++....+|         .++|||++|
T Consensus         4 mka~~~~~~g~~~~~l~~~~~~~P~-p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~G   82 (364)
T 1gu7_A            4 AQAVLYTQHGEPKDVLFTQSFEIDD-DNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLF   82 (364)
T ss_dssp             EEEEEESSCSCHHHHCEEEEEEECT-TSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEE
T ss_pred             EEEEEeccCCCchheeEEeeccCCC-CCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeEE
Confidence            899999988765 458888888887 66  99999999999999999999998765433456         899999999


Q ss_pred             EEEEeCCCCCCCCCCCEEEee
Q psy3511          69 IVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        69 ~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      +|+++|+++++|++||||++.
T Consensus        83 ~V~~vG~~v~~~~vGdrV~~~  103 (364)
T 1gu7_A           83 EVIKVGSNVSSLEAGDWVIPS  103 (364)
T ss_dssp             EEEEECTTCCSCCTTCEEEES
T ss_pred             EEEEeCCCCCcCCCCCEEEec
Confidence            999999999999999999865

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.88  E-value=5.6e-23  Score=134.72  Aligned_cols=88  Identities=25%  Similarity=0.204  Sum_probs=78.5

Q ss_pred             CeEEEEc--cc-CCCCceEEEEe---------cCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEE
Q psy3511           1 MLAVQCK--RW-GEPRVLELTTV---------DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSG   68 (91)
Q Consensus         1 m~a~~~~--~~-~~~~~~~~~~~---------~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G   68 (91)
                      ||++++.  ++ +.++.+++++.         +.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|
T Consensus        11 mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G   89 (349)
T 3pi7_A           11 MKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPA-PGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVG   89 (349)
T ss_dssp             EEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSEEEE
T ss_pred             heEEEEEccccCCCcccceEEEeecccccccCCCCC-CCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccceEEE
Confidence            8999999  66 35566777777         9999 9999999999999999999999999876555789999999999


Q ss_pred             EEEEeCCCC-CCCCCCCEEEee
Q psy3511          69 IVEEVGQGV-KHFKVKNIVRSS   89 (91)
Q Consensus        69 ~V~~vG~~~-~~~~~Gd~V~~~   89 (91)
                      +|+++|+++ ++|++||||++.
T Consensus        90 ~V~~vG~~v~~~~~vGdrV~~~  111 (349)
T 3pi7_A           90 TIVAGGDEPYAKSLVGKRVAFA  111 (349)
T ss_dssp             EEEEECSSHHHHHHTTCEEEEE
T ss_pred             EEEEECCCccCCCCCCCEEEEe
Confidence            999999999 999999999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.88  E-value=5.7e-22  Score=130.81  Aligned_cols=85  Identities=31%  Similarity=0.449  Sum_probs=76.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++++  +++++.+.|+ ++++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         7 mkA~~~~~~~~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~   82 (373)
T 2fzw_A            7 CKAAVAWEAGKP--LSIEEIEVAP-PKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKL   82 (373)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             eEEEEEecCCCC--cEEEEeeCCC-CCCCEEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCCCCCC
Confidence            899999877654  8889999998 99999999999999999999999887542 3578999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        83 ~vGdrV~~~   91 (373)
T 2fzw_A           83 KAGDTVIPL   91 (373)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEC
Confidence            999999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.88  E-value=5.6e-22  Score=130.97  Aligned_cols=84  Identities=29%  Similarity=0.383  Sum_probs=75.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.+  +++++.+.|+ ++++||+|||++++||++|++.+.|.++.  .+|.++|||++|+|+++|+++++|
T Consensus         9 mkA~~~~~~g~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~~   83 (374)
T 2jhf_A            9 CKAAVLWEEKKP--FSIEEVEVAP-PKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTV   83 (374)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSC
T ss_pred             EEEEEEecCCCc--eEEEEccCCC-CCCCeEEEEEeEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEECCCCCCC
Confidence            899999877654  8889999998 99999999999999999999999886643  378999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        84 ~vGdrV~~~   92 (374)
T 2jhf_A           84 RPGDKVIPL   92 (374)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEC
Confidence            999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=5.4e-22  Score=131.04  Aligned_cols=84  Identities=27%  Similarity=0.433  Sum_probs=75.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHH-HHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETY-IRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~-~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++.+++++  +++++.+.|+ ++++||+|||++++||++|++ .+.|.++  ..+|.++|||++|+|+++|+++++
T Consensus         9 mka~~~~~~~~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~V~~   83 (374)
T 1cdo_A            9 CKAAVAWEANKP--LVIEEIEVDV-PHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGPGVTE   83 (374)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECTTCCS
T ss_pred             eEEEEEecCCCC--eEEEEeeCCC-CCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEECCCCcc
Confidence            899999877654  8889999998 999999999999999999999 8888654  467899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus        84 ~~vGdrV~~~   93 (374)
T 1cdo_A           84 FQPGEKVIPL   93 (374)
T ss_dssp             CCTTCEEEEC
T ss_pred             CCCCCEEEeC
Confidence            9999999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.88  E-value=9.7e-22  Score=128.97  Aligned_cols=83  Identities=25%  Similarity=0.251  Sum_probs=74.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHH-HHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETY-IRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~-~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      |||+++.+++   .+++++.+.|+ +++|||+||+++++||++|++ ++.|.++  ..+|.++|||++|+|+++|+++++
T Consensus         1 MkA~~~~~~~---~~~~~e~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~p~v~G~E~~G~V~~vG~~v~~   74 (352)
T 3fpc_A            1 MKGFAMLSIG---KVGWIEKEKPA-PGPFDAIVRPLAVAPCTSDIHTVFEGAIG--ERHNMILGHEAVGEVVEVGSEVKD   74 (352)
T ss_dssp             CEEEEEEETT---EEEEEECCCCC-CCTTCEEEEEEEEECCHHHHHHHHSCTTC--CCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CeEEEEccCC---CceEEeCCCCC-CCCCeEEEEeCEEeEcccchHHHhCCCCC--CCCCcccCCcceEEEEEECCCCCc
Confidence            9999999765   37889999999 999999999999999999999 5577654  367899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus        75 ~~vGdrV~~~   84 (352)
T 3fpc_A           75 FKPGDRVVVP   84 (352)
T ss_dssp             CCTTCEEEEC
T ss_pred             CCCCCEEEEc
Confidence            9999999863

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=129.31  Aligned_cols=88  Identities=35%  Similarity=0.522  Sum_probs=77.4

Q ss_pred             CeEEEEcccCCCCceEE-EEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCC--------------CCCCCCccccc
Q psy3511           1 MLAVQCKRWGEPRVLEL-TTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYP--------------NLPDLPAILGT   64 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~-~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~--------------~~~~~p~~~g~   64 (91)
                      ||++++..++.++.+++ ++.+.|. + ++|||+||+++++||++|++.+.|.+.              ....+|.++||
T Consensus        22 mka~~~~~~g~~~~l~~~~~~p~P~-~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G~  100 (375)
T 2vn8_A           22 SMAWVIDKYGKNEVLRFTQNMMMPI-IHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGR  100 (375)
T ss_dssp             EEEEEBSSCCSGGGCEEEEEECCCC-CCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCCC
T ss_pred             ceeEEeccCCCccceEEeccccCCC-CCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcccce
Confidence            79999998888888999 8999887 5 899999999999999999999887531              11237899999


Q ss_pred             ceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          65 EVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        65 e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      |++|+|+++|+++++|++||||++.
T Consensus       101 E~~G~V~~vG~~V~~~~vGDrV~~~  125 (375)
T 2vn8_A          101 DVSGVVMECGLDVKYFKPGDEVWAA  125 (375)
T ss_dssp             EEEEEEEEECTTCCSCCTTCEEEEE
T ss_pred             eeeEEEEEeCCCCCCCCCCCEEEEe
Confidence            9999999999999999999999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.87  E-value=4.9e-22  Score=130.23  Aligned_cols=86  Identities=34%  Similarity=0.420  Sum_probs=75.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhC-CCC-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSG-QYP-NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g-~~~-~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..++.  .+++++.+.|+ ++++||+||+++++||++|++.+.| .++ ....+|.++|||++|+|+++|++++
T Consensus         5 mka~~~~~~g~--~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            5 MVAIMKTKPGY--GAELVEVDVPK-PGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             EEEEEECSSSS--SCEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             ceEEEEECCCC--CEEEEECCCCC-CCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            79999987764  58899999999 9999999999999999999999988 432 1135789999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||++.
T Consensus        82 ~~~vGdrV~~~   92 (348)
T 2d8a_A           82 GIEVGDYVSVE   92 (348)
T ss_dssp             SCCTTCEEEEC
T ss_pred             cCCCCCEEEEc
Confidence            99999999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.87  E-value=9e-22  Score=130.07  Aligned_cols=84  Identities=29%  Similarity=0.389  Sum_probs=75.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..++.+  +++++.+.|+ ++++||+|||++++||++|++.+.|. + ...+|.++|||++|+|+++|+++++|
T Consensus         9 mka~~~~~~g~~--l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~-~-~~~~P~v~GhE~~G~V~~vG~~v~~~   83 (376)
T 1e3i_A            9 CKAAIAWKTGSP--LCIEEIEVSP-PKACEVRIQVIATCVCPTDINATDPK-K-KALFPVVLGHECAGIVESVGPGVTNF   83 (376)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHTTCTT-S-CCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             eeEEEEecCCCC--eEEEEeeCCC-CCCCeEEEEEeEEeEchhhHHHhcCC-C-CCCCCcccCccccEEEEEECCCCccC
Confidence            799999877654  8888999998 99999999999999999999988875 2 23678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        84 ~vGdrV~~~   92 (376)
T 1e3i_A           84 KPGDKVIPF   92 (376)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEC
Confidence            999999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.87  E-value=1.6e-21  Score=128.92  Aligned_cols=83  Identities=30%  Similarity=0.439  Sum_probs=75.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..+   ..+++++.+.|+ +++|||+||+++++||++|++.+.|.++  ..+|.++|+|++|+|+++|+++++|
T Consensus        24 mkA~v~~~~---~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~p~v~G~e~~G~V~~vG~~v~~~   97 (370)
T 4ej6_A           24 MKAVRLESV---GNISVRNVGIPE-PGPDDLLVKVEACGICGTDRHLLHGEFP--STPPVTLGHEFCGIVVEAGSAVRDI   97 (370)
T ss_dssp             EEEEEEEET---TEEEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSEECCCSEEEEEEEECTTCCSS
T ss_pred             eEEEEEecC---CceEEEEccCCC-CCCCeEEEEEEEEeecHHHHHHHcCCCC--CCCCeecCcceEEEEEEECCCCCCC
Confidence            899999865   359999999999 9999999999999999999999998763  4678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        98 ~vGdrV~~~  106 (370)
T 4ej6_A           98 APGARITGD  106 (370)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEC
Confidence            999999863

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.87  E-value=2.3e-21  Score=127.93  Aligned_cols=86  Identities=21%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++.+..++.++.+++.+.+.|+ ++++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus        15 mk~~~~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~   92 (366)
T 1yqd_A           15 VKAFGWAARDQSGHLSPFNFSRRA-TGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKVKKV   92 (366)
T ss_dssp             EEEEEEEECSTTCCEEEEEEEECC-CCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             eeEEEEEEcCCCCCcEEEEccCCC-CCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCCCcC
Confidence            677777777777789999999999 99999999999999999999999886542 3578999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||++
T Consensus        93 ~vGDrV~~  100 (366)
T 1yqd_A           93 NVGDKVGV  100 (366)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999975

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.87  E-value=4.1e-21  Score=126.32  Aligned_cols=86  Identities=22%  Similarity=0.273  Sum_probs=74.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||+..+..++.++.+++.+.+.|+ ++++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         8 m~~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            8 RKTTGWAARDPSGILSPYTYTLRE-TGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CEEEEEEECSTTCCEEEEEEECCC-CCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             ceeEEEEEccCCCCcEEEEecCCC-CCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCC
Confidence            555555555666779999999999 99999999999999999999999886542 4678999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||+.
T Consensus        86 ~vGdrV~~   93 (357)
T 2cf5_A           86 TVGDIVGV   93 (357)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999974

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.87  E-value=3.3e-21  Score=126.81  Aligned_cols=85  Identities=24%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCC--------CCCCCCeEEEEEeEEecChhHHHHHhCCC--CCCCCCCcccccceEEEE
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKP--------GPCLDDEVLVKVMAAGINPVETYIRSGQY--PNLPDLPAILGTEVSGIV   70 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p--------~~~~~~ev~v~v~~~~l~~~d~~~~~g~~--~~~~~~p~~~g~e~~G~V   70 (91)
                      ||++++..   ++.+++++.+.|        + +++|||+||+++++||++|++.+.+..  .....+|.++|||++|+|
T Consensus         9 mka~~~~~---~~~l~~~~~~~P~~~~~~~~~-~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V   84 (363)
T 3m6i_A            9 NIGVFTNP---QHDLWISEASPSLESVQKGEE-LKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEV   84 (363)
T ss_dssp             CEEEEECT---TCCEEEEECSSCHHHHHHTCS-CCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEE
T ss_pred             ceeEEEeC---CCcEEEEEecCCccccccCCC-cCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEE
Confidence            79999884   556999999999        8 999999999999999999999887432  122367899999999999


Q ss_pred             EEeCCCCCCCCCCCEEEee
Q psy3511          71 EEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        71 ~~vG~~~~~~~~Gd~V~~~   89 (91)
                      +++|+++++|++||||++.
T Consensus        85 ~~vG~~v~~~~vGdrV~~~  103 (363)
T 3m6i_A           85 IAVHPSVKSIKVGDRVAIE  103 (363)
T ss_dssp             EEECTTCCSCCTTCEEEEC
T ss_pred             EEECCCCCCCCCCCEEEEe
Confidence            9999999999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.86  E-value=1.7e-21  Score=127.50  Aligned_cols=85  Identities=29%  Similarity=0.390  Sum_probs=70.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-CCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-LPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..++++  +++++.+.|+ ++++||+||+++++||++|++.+.|.++. ...+|.++|||++|+|+++|++ ++
T Consensus         4 mka~~~~~~g~~--l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            4 SKAALLKKFSEP--LSIEDVNIPE-PQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             EEBCEECSCCC-------EEEECC-CCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             eEEEEEecCCCC--CeEEEeeCCC-CCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence            889999877643  8888999998 99999999999999999999999887542 2357899999999999999999 99


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus        80 ~~~GdrV~~~   89 (344)
T 2h6e_A           80 VKKGDNVVVY   89 (344)
T ss_dssp             CCTTCEEEEC
T ss_pred             CCCCCEEEEC
Confidence            9999999764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.86  E-value=6.1e-21  Score=126.16  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=73.7

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++...+++  +.+++++.+.|+ ++++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus        23 ~~a~~~~~~~--~~l~~~~~p~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~   98 (369)
T 1uuf_A           23 IKAVGAYSAK--QPLEPMDITRRE-PGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKY   98 (369)
T ss_dssp             CEEEEBSSTT--SCCEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             EEEEEEcCCC--CCcEEEEecCCC-CCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEECCCCCCC
Confidence            6777766433  459999999999 99999999999999999999999886542 3578999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||++
T Consensus        99 ~vGDrV~~  106 (369)
T 1uuf_A           99 APGDLVGV  106 (369)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999985

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.86  E-value=3.8e-21  Score=126.41  Aligned_cols=83  Identities=20%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCC---CcccccceEEEEEEeCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL---PAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~---p~~~g~e~~G~V~~vG~~~   77 (91)
                      |||+++..++.  .+++++.+.|+ ++++||+||+++++||++|++.+.|.++. ..+   |.++|||++| |+++|++ 
T Consensus         1 MkA~~~~~~~~--~l~~~~~p~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-   74 (357)
T 2b5w_A            1 MKAIAVKRGED--RPVVIEKPRPE-PESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-   74 (357)
T ss_dssp             CEEEEEETTCS--SCEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-
T ss_pred             CeEEEEeCCCC--ceEEEECCCCC-CCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-
Confidence            99999997665  38899999999 99999999999999999999999987543 345   8899999999 9999999 


Q ss_pred             CCCCCCCEEEee
Q psy3511          78 KHFKVKNIVRSS   89 (91)
Q Consensus        78 ~~~~~Gd~V~~~   89 (91)
                      ++|++||||++.
T Consensus        75 ~~~~vGdrV~~~   86 (357)
T 2b5w_A           75 TELEEGDIVVPT   86 (357)
T ss_dssp             SSCCTTCEEEEC
T ss_pred             CCCCCCCEEEEC
Confidence            999999999875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.86  E-value=3e-21  Score=127.89  Aligned_cols=84  Identities=25%  Similarity=0.366  Sum_probs=75.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC--
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK--   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~--   78 (91)
                      ||++++.+++  +.+++++.+.|+ ++++||+|||++++||++|++.+.|.++ ...+|.++|||++|+|+++| +++  
T Consensus        18 mka~~~~~~g--~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           18 AHAMVLEKFN--QPLVYKEFEISD-IPRGSILVEILSAGVCGSDVHMFRGEDP-RVPLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             EEEEEBCSTT--SCCEEEEEEECC-CCTTCEEEEEEEEEECHHHHHHHTTCCT-TCCSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             eEEEEEecCC--CCeEEEEccCCC-CCCCEEEEEEeEEeecccchHHhcCCCC-CCCCCcccCcCcEEEEEEeC-Ccccc
Confidence            7999998776  468999999998 9999999999999999999999998654 23578999999999999999 999  


Q ss_pred             ----CCCCCCEEEee
Q psy3511          79 ----HFKVKNIVRSS   89 (91)
Q Consensus        79 ----~~~~Gd~V~~~   89 (91)
                          +|++||||++.
T Consensus        93 ~~~~~~~vGdrV~~~  107 (380)
T 1vj0_A           93 LNGELLKPGDLIVWN  107 (380)
T ss_dssp             TTSCBCCTTCEEEEC
T ss_pred             ccCCCCCCCCEEEEc
Confidence                99999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.86  E-value=3.3e-21  Score=126.83  Aligned_cols=83  Identities=19%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             CeEEEEcccCCCCceEEEE--ecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTT--VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~--~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..++++  +++++  .+.|+ ++++||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         7 mka~~~~~~~~~--l~~~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            7 FEGIAIQSHEDW--KNPKKTKYDPKP-FYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             EEEEEECCSSST--TSCEEEEECCCC-CCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCC
T ss_pred             eEEEEEecCCCC--eeEEeccccCCC-CCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeCCCCC
Confidence            899999887644  67778  89999 89999999999999999999999886542 35789999999999999999999


Q ss_pred             -CCCCCCEEE
Q psy3511          79 -HFKVKNIVR   87 (91)
Q Consensus        79 -~~~~Gd~V~   87 (91)
                       +|++||||.
T Consensus        83 ~~~~~GdrV~   92 (360)
T 1piw_A           83 SGLKVGQRVG   92 (360)
T ss_dssp             SSCCTTCEEE
T ss_pred             CCCCCCCEEE
Confidence             999999995

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.86  E-value=2.7e-21  Score=127.26  Aligned_cols=87  Identities=28%  Similarity=0.430  Sum_probs=74.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..++.+  +++++.+.|+.+++|||+||+++++||++|++.+.|.++  ....+|.++|||++|+|+++|++++
T Consensus        16 mka~~~~~~g~~--l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   93 (359)
T 1h2b_A           16 LKAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVE   93 (359)
T ss_dssp             -CEEEESSTTSC--CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             ceEEEEecCCCC--cEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCCC
Confidence            899999987644  888888877536899999999999999999999988653  1236789999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||+++
T Consensus        94 ~~~vGdrV~~~  104 (359)
T 1h2b_A           94 GLEKGDPVILH  104 (359)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEeC
Confidence            99999999764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.86  E-value=4.1e-21  Score=128.11  Aligned_cols=89  Identities=29%  Similarity=0.441  Sum_probs=77.3

Q ss_pred             CeEEEEcccCCCC-------------------------ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC---
Q psy3511           1 MLAVQCKRWGEPR-------------------------VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY---   52 (91)
Q Consensus         1 m~a~~~~~~~~~~-------------------------~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~---   52 (91)
                      |||++++.++.++                         .+++++.+.|+.++++||+||+.+++||++|++++.|..   
T Consensus         3 m~a~~~~~~~~p~~~~~~~~~~~~~~~~m~a~~~~~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~   82 (404)
T 3ip1_A            3 LRAVRLHAKWDPRPEFKLGPKDIEGKLTWLGSKVWRYPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGY   82 (404)
T ss_dssp             EEEEEEEEEECCCTTCCCCTTCBTTTBBSCGGGTEEEEEEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSB
T ss_pred             ceEEEecCCCCCCCCCCCCchhhhhhhhcceEEEEeCCceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCcc
Confidence            7999998888776                         788889998864789999999999999999999988642   


Q ss_pred             ---CCCCCCCcccccceEEEEEEeCCCC------CCCCCCCEEEee
Q psy3511          53 ---PNLPDLPAILGTEVSGIVEEVGQGV------KHFKVKNIVRSS   89 (91)
Q Consensus        53 ---~~~~~~p~~~g~e~~G~V~~vG~~~------~~~~~Gd~V~~~   89 (91)
                         +....+|.++|||++|+|+++|+++      ++|++||||++.
T Consensus        83 ~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~  128 (404)
T 3ip1_A           83 ILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAE  128 (404)
T ss_dssp             BSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEEC
T ss_pred             ccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEEC
Confidence               1123678999999999999999999      889999999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.86  E-value=7.1e-21  Score=124.85  Aligned_cols=85  Identities=27%  Similarity=0.322  Sum_probs=73.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhC-CCC-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSG-QYP-NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g-~~~-~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..+   ..+++++.+.|+ ++++||+||+++++||++|++.+.+ .+. ....+|.++|||++|+|+++|++++
T Consensus         5 mka~~~~~~---~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            5 NLSAVLYKQ---NDLRLEQRPIPE-PKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             CEEEEEEET---TEEEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             CEEEEEEcC---CcEEEEEecCCC-CCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            899999864   468999999998 9999999999999999999998874 322 1235789999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||++.
T Consensus        81 ~~~vGdrV~~~   91 (352)
T 1e3j_A           81 HLKKGDRVAVE   91 (352)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEEc
Confidence            99999999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.85  E-value=6e-21  Score=125.44  Aligned_cols=85  Identities=28%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-C-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~-~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ||++++..+   ..+++++.+.|+ ++++||+||+++++||++|++.+.+.. . ....+|.++|||++|+|+++|++++
T Consensus         8 mka~~~~~~---~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            8 NLSLVVHGP---GDLRLENYPIPE-PGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CEEEEEEET---TEEEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ceEEEEecC---CcEEEEEccCCC-CCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            899999864   468999999998 999999999999999999999887432 1 1125689999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||++.
T Consensus        84 ~~~vGdrV~~~   94 (356)
T 1pl8_A           84 HLKPGDRVAIE   94 (356)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEEe
Confidence            99999999864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.85  E-value=6.6e-21  Score=123.97  Aligned_cols=86  Identities=22%  Similarity=0.285  Sum_probs=76.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.++++++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|+++  ++++|
T Consensus         5 mka~~~~~~g~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~~   81 (330)
T 1tt7_A            5 FQALQAEKNADDVSVHVKTISTED-LPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPRF   81 (330)
T ss_dssp             EEEEEECCGGGSCCCEEEEEESSS-SCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTTC
T ss_pred             ceEEEEecCCCCcceeEeecCCCC-CCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCCC
Confidence            899999988766679999999999 999999999999999999999998876543467899999999999995  56789


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        82 ~vGdrV~~~   90 (330)
T 1tt7_A           82 AEGDEVIAT   90 (330)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEc
Confidence            999999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.85  E-value=1.1e-20  Score=125.73  Aligned_cols=83  Identities=25%  Similarity=0.344  Sum_probs=73.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-CC-----CeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-LD-----DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVG   74 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~-----~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG   74 (91)
                      |||+++..+   ..+++++.+.|+ + ++     +||+|||++++||++|++.+.|.++  ..+|.++|||++|+|+++|
T Consensus         3 MkA~~~~~~---~~l~~~~~p~P~-~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~vG   76 (398)
T 2dph_A            3 NKSVVYHGT---RDLRVETVPYPK-LEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVEKG   76 (398)
T ss_dssp             EEEEEEEET---TEEEEEEECCCC-SEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEEEC
T ss_pred             cEEEEEEcC---CCEEEEEccCCC-CCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEEEC
Confidence            899999864   468899999998 7 67     9999999999999999999988643  3678999999999999999


Q ss_pred             CCCCCCCCCCEEEee
Q psy3511          75 QGVKHFKVKNIVRSS   89 (91)
Q Consensus        75 ~~~~~~~~Gd~V~~~   89 (91)
                      +++++|++||||++.
T Consensus        77 ~~v~~~~vGDrV~~~   91 (398)
T 2dph_A           77 SDVELMDIGDLVSVP   91 (398)
T ss_dssp             TTCCSCCTTCEEECC
T ss_pred             CCCCCCCCCCEEEEc
Confidence            999999999999863

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.85  E-value=5.3e-21  Score=124.33  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=75.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++.++.+++++.+.|+ +++|||+||+++++||++|++.+.|.++....+|.++|||++|+|++.  ++++|
T Consensus         4 mka~~~~~~g~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~   80 (328)
T 1xa0_A            4 FQAFVVNKTETEFTAGVQTISMDD-LPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF   80 (328)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEGGG-SCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred             ceEEEEecCCCcceeEEEeccCCC-CCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence            899999988766678999999999 999999999999999999999988865433467899999999999995  56889


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||++.
T Consensus        81 ~vGdrV~~~   89 (328)
T 1xa0_A           81 REGDEVIAT   89 (328)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEc
Confidence            999999864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.84  E-value=1.8e-20  Score=123.84  Aligned_cols=81  Identities=30%  Similarity=0.354  Sum_probs=69.4

Q ss_pred             CeEEEEcccCCCCceEEE-EecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||++++..+   ..++++ +.+.|+ ++++||+||+++++||++|++++.+.    ...|.++|||++|+|+++|+++++
T Consensus        12 mkA~v~~~~---~~l~~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~p~v~G~e~~G~V~~vG~~v~~   83 (371)
T 3gqv_A           12 QTALTVNDH---DEVTVWNAAPCPM-LPRDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVVAVGSDVTH   83 (371)
T ss_dssp             EEEEEECTT---SCEEEEEEECCCC-CCTTSEEEEEEEEECCGGGGC---------CCTTSCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEcCC---CceEEeccCCCCC-CCCCEEEEEEEEEEcCHHHHHHhhcC----CCCCccCccccEEEEEEeCCCCCC
Confidence            799999854   459998 999999 99999999999999999999888662    245899999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||++.
T Consensus        84 ~~~GdrV~~~   93 (371)
T 3gqv_A           84 IQVGDRVYGA   93 (371)
T ss_dssp             CCTTCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.84  E-value=3.4e-20  Score=123.30  Aligned_cols=82  Identities=22%  Similarity=0.341  Sum_probs=73.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCC-CCe------EEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEe
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCL-DDE------VLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV   73 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-~~e------v~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~v   73 (91)
                      ||++++..+   ..+++++.+.|+ ++ ++|      |+|||++++||++|++.+.|.++  ..+|.++|||++|+|+++
T Consensus         3 Mka~~~~~~---~~l~~~~~p~P~-~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~p~v~GhE~~G~V~~v   76 (398)
T 1kol_A            3 NRGVVYLGS---GKVEVQKIDYPK-MQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT--AQVGLVLGHEITGEVIEK   76 (398)
T ss_dssp             EEEEEEEET---TEEEEEEECCCC-SBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCCCCEEEEEEEE
T ss_pred             cEEEEEecC---CceEEEEecCCC-CCCCCcccccceEEEEEEEEeechhhHHHHcCCCC--CCCCcccCcccEEEEEEE
Confidence            899998864   358899999998 86 888      99999999999999999988653  356889999999999999


Q ss_pred             CCCCCCCCCCCEEEe
Q psy3511          74 GQGVKHFKVKNIVRS   88 (91)
Q Consensus        74 G~~~~~~~~Gd~V~~   88 (91)
                      |+++++|++||||++
T Consensus        77 G~~v~~~~vGDrV~~   91 (398)
T 1kol_A           77 GRDVENLQIGDLVSV   91 (398)
T ss_dssp             CTTCCSCCTTCEEEC
T ss_pred             CCCCCcCCCCCEEEE
Confidence            999999999999985

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.83  E-value=1.8e-20  Score=126.17  Aligned_cols=88  Identities=33%  Similarity=0.455  Sum_probs=72.0

Q ss_pred             CeEEEEcccC-----------CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHh----------------CCCC
Q psy3511           1 MLAVQCKRWG-----------EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS----------------GQYP   53 (91)
Q Consensus         1 m~a~~~~~~~-----------~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~----------------g~~~   53 (91)
                      ||++++..++           ..+.+++++.+.|+ +++|||+|||++++||++|++...                +.+.
T Consensus        25 mkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~-~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~  103 (447)
T 4a0s_A           25 YLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPE-LAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWA  103 (447)
T ss_dssp             EEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGG
T ss_pred             heeeeeeccccccccccccCCCCCCceEEeccCCC-CCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccCccc
Confidence            8999998876           11368999999999 999999999999999999975432                1121


Q ss_pred             CCCCCC-cccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          54 NLPDLP-AILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        54 ~~~~~p-~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      ....+| .++|||++|+|+++|+++++|++||||++.
T Consensus       104 ~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~  140 (447)
T 4a0s_A          104 TRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVH  140 (447)
T ss_dssp             GGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             cccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEe
Confidence            112456 699999999999999999999999999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.82  E-value=1.7e-19  Score=118.46  Aligned_cols=86  Identities=20%  Similarity=0.247  Sum_probs=72.8

Q ss_pred             CeEEEE-ccc---CCC--CceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhC----CCCCCCCCCcccccceEEE
Q psy3511           1 MLAVQC-KRW---GEP--RVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSG----QYPNLPDLPAILGTEVSGI   69 (91)
Q Consensus         1 m~a~~~-~~~---~~~--~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g----~~~~~~~~p~~~g~e~~G~   69 (91)
                      ||++++ ..+   +.+  +.+++++.+.|. + ++|||+|||++++||+.|+..+.+    .+.....+|.++|||++|+
T Consensus         9 mka~v~~~~~~~~g~p~~~~l~~~~~~~P~-~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~G~   87 (357)
T 2zb4_A            9 VQRVVLNSRPGKNGNPVAENFRMEEVYLPD-NINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGI   87 (357)
T ss_dssp             EEEEEECCCCCTTSCCCGGGEEEEEEECCS-CCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEEEE
T ss_pred             ceEEEEeccCCCCCCCCcCceEEEeecCCC-CCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccEEEE
Confidence            899999 555   555  779999999998 7 999999999999999999987765    2322235688999999999


Q ss_pred             EEEeCCCCCCCCCCCEEEee
Q psy3511          70 VEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        70 V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      |++  +++++|++||||++.
T Consensus        88 V~~--~~v~~~~vGdrV~~~  105 (357)
T 2zb4_A           88 IEE--SKHTNLTKGDFVTSF  105 (357)
T ss_dssp             EEE--ECSTTCCTTCEEEEE
T ss_pred             EEe--cCCCCCCCCCEEEec
Confidence            999  889999999999864

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.81  E-value=5.7e-20  Score=124.22  Aligned_cols=88  Identities=24%  Similarity=0.334  Sum_probs=72.1

Q ss_pred             CeEEEEcccC-------------CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC---------------
Q psy3511           1 MLAVQCKRWG-------------EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY---------------   52 (91)
Q Consensus         1 m~a~~~~~~~-------------~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~---------------   52 (91)
                      |||+++..++             ..+.+++++.+.|+ ++++||+|||.+++||++|++...+..               
T Consensus        31 mkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~-~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~  109 (456)
T 3krt_A           31 YRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPE-LGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSD  109 (456)
T ss_dssp             EEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCC-CCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHTSCH
T ss_pred             eEEEEEeccccccccccccccCCCCCCcEEEEccCCC-CCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhcccccc
Confidence            7899998752             12568999999999 999999999999999999987653321               


Q ss_pred             -CCCCCCC-cccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511          53 -PNLPDLP-AILGTEVSGIVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        53 -~~~~~~p-~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                       .....+| .++|||++|+|+++|+++++|++||+|++.
T Consensus       110 ~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~  148 (456)
T 3krt_A          110 LAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAH  148 (456)
T ss_dssp             HHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             ccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEe
Confidence             0012456 589999999999999999999999999863

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.81  E-value=4.2e-20  Score=122.44  Aligned_cols=86  Identities=23%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--------------------------
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--------------------------   54 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--------------------------   54 (91)
                      ||+++...  ++..+++++.+.|+ +++|||+||+++++||++|++++.|.++.                          
T Consensus         8 mka~v~~~--~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            8 LRSRIKSS--GELELSLDSIDTPH-PGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEECTT--SEEEEEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             HHHHHhcC--CCCceEEEeccCCC-CCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            67776652  34469999999999 99999999999999999999999885310                          


Q ss_pred             --CCCCCcccccceEEEEEEeCCCC-CCCCCCCEEEee
Q psy3511          55 --LPDLPAILGTEVSGIVEEVGQGV-KHFKVKNIVRSS   89 (91)
Q Consensus        55 --~~~~p~~~g~e~~G~V~~vG~~~-~~~~~Gd~V~~~   89 (91)
                        ...+|.++|||++|+|+++|+++ ++|++||||++.
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~  122 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI  122 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEEC
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEec
Confidence              12467899999999999999999 889999999875

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.80  E-value=1.9e-19  Score=118.68  Aligned_cols=82  Identities=22%  Similarity=0.274  Sum_probs=69.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCC-CeEEEEEeEEecChhHHHHHhC--CCCCCCCC---CcccccceEEEEEEeC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLD-DEVLVKVMAAGINPVETYIRSG--QYPNLPDL---PAILGTEVSGIVEEVG   74 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~-~ev~v~v~~~~l~~~d~~~~~g--~~~~~~~~---p~~~g~e~~G~V~~vG   74 (91)
                      |||+++..++.+  +++++.+.|+ +++ +||+|||++++||++|++.+.|  .++. ..+   |.++|||++|+|++  
T Consensus         1 MkA~~~~~~g~~--l~~~~~~~P~-~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--   74 (366)
T 2cdc_A            1 MKAIIVKPPNAG--VQVKDVDEKK-LDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--   74 (366)
T ss_dssp             CEEEEECTTSCC--CEEEECCGGG-SCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--
T ss_pred             CeEEEEeCCCCc--eEEEECcCCC-CCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--
Confidence            999999987753  8899999998 899 9999999999999999999988  5431 245   89999999999999  


Q ss_pred             CCCCCCCCCCEEEee
Q psy3511          75 QGVKHFKVKNIVRSS   89 (91)
Q Consensus        75 ~~~~~~~~Gd~V~~~   89 (91)
                      ++ ++|++||||++.
T Consensus        75 ~~-~~~~~GDrV~~~   88 (366)
T 2cdc_A           75 SY-HGFSQGDLVMPV   88 (366)
T ss_dssp             CC-SSCCTTCEEEEC
T ss_pred             CC-CCCCCCCEEEEc
Confidence            66 899999999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.79  E-value=2.8e-18  Score=111.81  Aligned_cols=85  Identities=14%  Similarity=0.068  Sum_probs=69.6

Q ss_pred             CeEEEEccc--C--CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccc----eEEEEEE
Q psy3511           1 MLAVQCKRW--G--EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTE----VSGIVEE   72 (91)
Q Consensus         1 m~a~~~~~~--~--~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e----~~G~V~~   72 (91)
                      ||+|++...  +  +++.+++++.+.|+ +++|||+|||++++||++|+..+.+....  ..|.++|||    ++|+|++
T Consensus         8 mka~v~~~~~~g~~~~~~l~~~~~~~P~-~~~~eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            8 NRQYQLAQRPSGLPGRDTFSFVETPLGE-PAEGQILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             EEEEEECSCCSSSCCTTSEEEEEEECCC-CCTTCEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEEE
T ss_pred             ccEEEEEecCCCCCCCCceEEEeccCCC-CCCCEEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEEe
Confidence            799999862  3  46789999999999 99999999999999999999888764332  335555555    8999999


Q ss_pred             eCCCCCCCCCCCEEEeeC
Q psy3511          73 VGQGVKHFKVKNIVRSSK   90 (91)
Q Consensus        73 vG~~~~~~~~Gd~V~~~~   90 (91)
                        +++++|++||||++.+
T Consensus        85 --~~v~~~~vGdrV~~~G  100 (336)
T 4b7c_A           85 --SKHPGFQAGDYVNGAL  100 (336)
T ss_dssp             --ECSTTCCTTCEEEEEC
T ss_pred             --cCCCCCCCCCEEeccC
Confidence              4588999999998753

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.74  E-value=1.2e-17  Score=119.25  Aligned_cols=81  Identities=32%  Similarity=0.373  Sum_probs=70.9

Q ss_pred             EEEcccCCCCceEEEEecC--CCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           4 VQCKRWGEPRVLELTTVDK--PGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~--p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      +.+..+|.++.+++.+.+.  |+ +++|||+|||+++|||++|++.+.|.++    .+.++|||++|+|+++|+++++|+
T Consensus       213 l~~~~~G~~~~L~~~~~~~p~~~-~~~~eVlV~V~a~gin~~D~~~~~G~~~----~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          213 LEATRPGSLDGLALVDEPTATAP-LGDGEVRIAMRAAGVNFRDALIALGMYP----GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             EEESSTTSSTTEEECCCHHHHSC-CCSSEEEEEEEEEEECHHHHHHTTTCCS----SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EecCCCCCccceEEEeCCccCCC-CCCCEEEEEEEEEccCHHHHHHHcCCCC----CCccccceeEEEEEEeCCCCCcCC
Confidence            4566778888999988774  56 8999999999999999999999988764    245799999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||||+++
T Consensus       288 vGDrV~~~  295 (795)
T 3slk_A          288 PGDRVMGM  295 (795)
T ss_dssp             TTCEEEEC
T ss_pred             CCCEEEEE
Confidence            99999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.74  E-value=1.6e-17  Score=107.00  Aligned_cols=75  Identities=33%  Similarity=0.441  Sum_probs=65.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++.+++.++.+  ++.+.|+ ++++||+||+++++||++|++.+.|.++....+|.++|||++|+|+         
T Consensus         1 Mka~~~~~~g~~~~l--~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~---------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLEL--VDLPEPE-AEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE---------   68 (302)
T ss_dssp             CEEEEECSTTSCEEE--EECCCCC-CCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET---------
T ss_pred             CeEEEEcCCCCchhe--EECCCCC-CCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE---------
Confidence            999999988877444  4888888 9999999999999999999999998765434678999999999998         


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                        ||||++.
T Consensus        69 --GdrV~~~   75 (302)
T 1iz0_A           69 --GRRYAAL   75 (302)
T ss_dssp             --TEEEEEE
T ss_pred             --CcEEEEe
Confidence              9999865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.69  E-value=1.3e-16  Score=103.80  Aligned_cols=81  Identities=22%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             CeEEEEccc--CC--CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCC
Q psy3511           1 MLAVQCKRW--GE--PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQG   76 (91)
Q Consensus         1 m~a~~~~~~--~~--~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~   76 (91)
                      ||+|++..+  +.  ++.+++++.+.|+ +++|||+|||++++||+.|+.+ ..    ...+|.++|||++|+|++.  +
T Consensus         8 mka~~~~~~~~g~~~~~~l~~~e~~~P~-~~~~eVlVkv~a~gi~~~~~~~-~~----~~~~p~~~g~e~~G~Vv~~--~   79 (333)
T 1v3u_A            8 AKSWTLKKHFQGKPTQSDFELKTVELPP-LKNGEVLLEALFLSVDPYMRIA-SK----RLKEGAVMMGQQVARVVES--K   79 (333)
T ss_dssp             EEEEEECC-----CCGGGEEEEEEECCC-CCTTCEEEEEEEEECCTHHHHH-TT----TCCTTSBCCCCEEEEEEEE--S
T ss_pred             ccEEEEeecCCCCCCccceEEEeCCCCC-CCCCEEEEEEEEeccCHHHccc-cC----cCCCCcccccceEEEEEec--C
Confidence            799999875  43  3679999999999 9999999999999999988732 11    2346788999999999994  6


Q ss_pred             CCCCCCCCEEEee
Q psy3511          77 VKHFKVKNIVRSS   89 (91)
Q Consensus        77 ~~~~~~Gd~V~~~   89 (91)
                      +++|++||||++.
T Consensus        80 v~~~~vGdrV~~~   92 (333)
T 1v3u_A           80 NSAFPAGSIVLAQ   92 (333)
T ss_dssp             CTTSCTTCEEEEC
T ss_pred             CCCCCCCCEEEec
Confidence            7899999999864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.69  E-value=2.8e-16  Score=102.62  Aligned_cols=88  Identities=23%  Similarity=0.255  Sum_probs=69.2

Q ss_pred             CeEEEEccc--CCCC--ceEEE--EecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCC---CCCCcccccceEEEEE
Q psy3511           1 MLAVQCKRW--GEPR--VLELT--TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL---PDLPAILGTEVSGIVE   71 (91)
Q Consensus         1 m~a~~~~~~--~~~~--~~~~~--~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~---~~~p~~~g~e~~G~V~   71 (91)
                      ||++.+...  +++.  .++++  +.+.|.++++||||||+.++++|+.|+ ...|.+...   ..+|.++|||++|++.
T Consensus         5 mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~   83 (345)
T 2j3h_A            5 NKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGV   83 (345)
T ss_dssp             EEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEE
T ss_pred             ceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceE
Confidence            689988876  6676  68888  788874268999999999999999885 344543211   1367899999999999


Q ss_pred             E--eCCCCCCCCCCCEEEee
Q psy3511          72 E--VGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        72 ~--vG~~~~~~~~Gd~V~~~   89 (91)
                      +  +|+++++|++||||++.
T Consensus        84 ~GvV~~~v~~~~vGdrV~~~  103 (345)
T 2j3h_A           84 SRIIESGHPDYKKGDLLWGI  103 (345)
T ss_dssp             EEEEEECSTTCCTTCEEEEE
T ss_pred             EEEEecCCCCCCCCCEEEee
Confidence            9  99999999999999864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.41  E-value=7.4e-07  Score=70.21  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=54.0

Q ss_pred             cccCCCCceEEEEecCCCCC--CCCeEEEEEeEEecChhHHHHHhCCCCCC------CCCCcccccceEEEEEEeCCCCC
Q psy3511           7 KRWGEPRVLELTTVDKPGPC--LDDEVLVKVMAAGINPVETYIRSGQYPNL------PDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         7 ~~~~~~~~~~~~~~~~p~~~--~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      ..++..+.+.+.+.+....+  .++||+|+|+++|+|+.|++.+.|.++..      ...+.++|+|++|+|.       
T Consensus      1536 ~~~g~l~sl~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~------- 1608 (2512)
T 2vz8_A         1536 LSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA------- 1608 (2512)
T ss_dssp             SSTTCTTSEEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET-------
T ss_pred             cCCCCcCceEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc-------
Confidence            34455677888876643202  37999999999999999999999876421      1235689999999873       


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                         +||+|+++
T Consensus      1609 ---vGdrV~g~ 1616 (2512)
T 2vz8_A         1609 ---SGRRVMGM 1616 (2512)
T ss_dssp             ---TSCCEEEE
T ss_pred             ---cCCEEEEe
Confidence               68998875

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=93.52  E-value=0.057  Score=29.21  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             eEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGVK---------HFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~~---------~~~~Gd~V~~   88 (91)
                      ..|+|+++|++..         .+++||+|+.
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~   67 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIY   67 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEE
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEE
Confidence            5799999999642         4899999974

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=93.20  E-value=0.12  Score=28.74  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=19.5

Q ss_pred             eEEEEEEeCCCCC--CCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGVK--HFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~~--~~~~Gd~V~~   88 (91)
                      .-|+|+++|++..  .+++||+|+.
T Consensus        47 ~~g~VvAVG~g~~~~~vKvGD~Vl~   71 (111)
T 1g31_A           47 ELCVVHSVGPDVPEGFCEVGDLTSL   71 (111)
T ss_dssp             EEEEEEEECTTSCTTSCCTTCEEEE
T ss_pred             ceEEEEEECCCCccccccCCCEEEE
Confidence            5799999999865  4899999975

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=91.31  E-value=0.16  Score=27.52  Aligned_cols=23  Identities=39%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             eEEEEEEeCCCC---------CCCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGV---------KHFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~---------~~~~~Gd~V~~   88 (91)
                      ..|+|+++|++.         ..+++||+|+.
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf   67 (97)
T 1pcq_O           36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIF   67 (97)
T ss_dssp             CEEEEEEECSEECTTSSSCEECSCCTTCEEEE
T ss_pred             cccEEEEEcCceecCCCCEEecccCCCCEEEE
Confidence            579999999863         13899999975

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=89.97  E-value=0.26  Score=26.81  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=18.9

Q ss_pred             eEEEEEEeCCCCC----------CCCCCCEEEee
Q psy3511          66 VSGIVEEVGQGVK----------HFKVKNIVRSS   89 (91)
Q Consensus        66 ~~G~V~~vG~~~~----------~~~~Gd~V~~~   89 (91)
                      ..|+|+++|++..          .+++||+|+..
T Consensus        38 ~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~   71 (99)
T 1p3h_A           38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS   71 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred             ceEEEEEECCCcCcCCCCEEEccccCCCCEEEEC
Confidence            6799999998631          38999999753

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=89.78  E-value=0.11  Score=28.37  Aligned_cols=23  Identities=35%  Similarity=0.323  Sum_probs=18.6

Q ss_pred             eEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511          66 VSGIVEEVGQGVK---------HFKVKNIVRS   88 (91)
Q Consensus        66 ~~G~V~~vG~~~~---------~~~~Gd~V~~   88 (91)
                      ..|+|+++|++..         .+++||+|+.
T Consensus        41 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf   72 (100)
T 1we3_O           41 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVF   72 (100)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEE
T ss_pred             cCCEEEEECCCcCCCCCCEEeeecCCCCEEEE
Confidence            5799999998742         4899999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	4e-12
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	1e-10
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	2e-10
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	1e-09
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	7e-09
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	8e-09
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	9e-09
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	1e-08
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	2e-08
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	8e-08
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	4e-07
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	4e-07
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	4e-07
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	4e-07
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	6e-07
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	8e-07
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	3e-06
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	7e-06
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	8e-06
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	1e-05
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-05
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	2e-05
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	3e-04
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	0.002
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	0.003

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.5 bits (135), Expect = 4e-12
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A     +G P  +E   V  PGP    +VLVK+ A+G+   + +   G +P  P LP 
Sbjct: 6  MKAAVVHAYGAPLRIEEVKVPLPGP---GQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 62

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          I G E  G V  VG GV   K  + V
Sbjct: 63 IPGHEGVGYVAAVGSGVTRVKEGDRV 88

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 1  MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
          M AV+   +G P VL+L + +  P P  D +VL+KV A G+NPVETYIRSG Y   P LP
Sbjct: 3  MRAVRVFEFGGPEVLKLRSDIAVPIPK-DHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 61

Query: 60 AILGTEVSGIVEEVGQGVKHF 80
             G++V+G++E VG     F
Sbjct: 62 YTPGSDVAGVIEAVGDNASAF 82

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.3 bits (124), Expect = 2e-10
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   +++ EP  L++  V+KP      EVLV++ A G+   + +   G +P  P LP 
Sbjct: 1  MKAAVVEQFKEP--LKIKEVEKPTIS-YGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          I G E  GIVEEVG GV H KV + V
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKVGDRV 83

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 50.3 bits (119), Expect = 1e-09
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD--- 57
          M AV+    G+P  L L  +  P P    +VL+KV AAG+   + ++R G++ NL     
Sbjct: 1  MRAVRLVEIGKP--LSLQEIGVPKP-KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 58 ----LPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
              LP  LG E++G +EEVG  V  +   ++V
Sbjct: 58 LGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 7e-09
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A      G+P  +E   V  P      EV +K++A  +   + Y  SG  P     P 
Sbjct: 7  CKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPEGCF-PV 62

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          ILG   +GIVE VG+GV   K  + V
Sbjct: 63 ILGHLGAGIVESVGEGVTKLKAGDTV 88

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 8e-09
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          + A+  ++     +  + T+D+     + +V V V  + +N  +    +G+   + + P 
Sbjct: 1  LQALLLEQQDGKTLASVQTLDESRLP-EGDVTVDVHWSSLNYKDALAITGKGKIIRNFPM 59

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIVR 87
          I G + +G V         F     V 
Sbjct: 60 IPGIDFAGTVRTSEDPR--FHAGQEVL 84

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 47.2 bits (111), Expect = 9e-09
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A    +        + T+       + +VLV+V  + +N  +          +   P 
Sbjct: 4  FQAFVVNKTETEFTAGVQTISMDDLP-EGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPF 62

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          + G +++G+V            + I 
Sbjct: 63 VPGIDLAGVVVSSQHPRFREGDEVIA 88

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 1e-08
 Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
             +  +   + +  + T  D P P  D ++ +K+ A G+   + +  +G + N+  +P 
Sbjct: 7  FEGIAIQSHEDWKNPKKTKYD-PKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMK-MPL 64

Query: 61 ILGTEVSGIVEEVGQGVKHF 80
          ++G E+ G V ++G      
Sbjct: 65 VVGHEIVGKVVKLGPKSNSG 84

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 47.2 bits (111), Expect = 2e-08
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          ++A      G     EL  +    P   DEVLVKV+A G+   +  +R  +YP    LPA
Sbjct: 4  IIAAVTPCKGAD--FELQALKIRQPQ-GDEVLVKVVATGMCHTDLIVRDQKYPV--PLPA 58

Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
          +LG E SGI+E +G  V   +V
Sbjct: 59 VLGHEGSGIIEAIGPNVTELQV 80

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (104), Expect = 8e-08
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP 53
           ++  + G P VL+        P  ++E+ V+  A GIN ++TYIRSG YP
Sbjct: 3  RIEFHKHGGPEVLQAVEFTPADPA-ENEIQVENKAIGINFIDTYIRSGLYP 52

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 43.1 bits (100), Expect = 4e-07
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSG--QYPNLPDLPAILGTEVSG 68
          +   L L     P P  +DEVL+++   GI   + +          +   P ++G E SG
Sbjct: 9  KQNDLRLEQRPIPEPK-EDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASG 67

Query: 69 IVEEVGQGVKHFKVKNIV 86
           V +VG+ VKH K  + V
Sbjct: 68 TVVKVGKNVKHLKKGDRV 85

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 4e-07
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGI 69
          P  L L     P P   +EVL+++ + GI   + +          +   P +LG E SG 
Sbjct: 16 PGDLRLENYPIPEPG-PNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGT 74

Query: 70 VEEVGQGVKHFK 81
          VE+VG  VKH K
Sbjct: 75 VEKVGSSVKHLK 86

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 43.4 bits (101), Expect = 4e-07
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A       +P V+E   VD P     +E+ +K++A G+   + Y            P 
Sbjct: 9  CKAAVAWEANKPLVIEEIEVDVPHA---NEIRIKIIATGVCHTDLYHLFEGKHK-DGFPV 64

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          +LG E +GIVE VG GV  F+    V
Sbjct: 65 VLGHEGAGIVESVGPGVTEFQPGEKV 90

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 43.3 bits (101), Expect = 4e-07
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A    + G P  +E   V  P      EV ++V+A  + P +              P 
Sbjct: 9  CKAAIAWKTGSPLCIEEIEVSPPKA---CEVRIQVIATCVCPTDINAT--DPKKKALFPV 63

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          +LG E +GIVE VG GV +FK  + V
Sbjct: 64 VLGHECAGIVESVGPGVTNFKPGDKV 89

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 42.9 bits (100), Expect = 6e-07
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A       +P  LE  TV  P      EV +K++A+GI   ++ +     P+    P 
Sbjct: 9  CKAAVAWEPHKPLSLETITVAPPKA---HEVRIKILASGICGSDSSVLKEIIPSKF--PV 63

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          ILG E  G+VE +G GV   K  + V
Sbjct: 64 ILGHEAVGVVESIGAGVTCVKPGDKV 89

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 42.4 bits (98), Expect = 8e-07
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1  MLAVQCKRWGEPR-VLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYP 53
            AV   + GEP+ VL   + +     L  +EV+VK + + +NP +     G YP
Sbjct: 4  AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYP 58

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.0 bits (95), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A+Q ++  +   + + T+        D VL+KV  +GIN  +          + + P 
Sbjct: 4  FQALQAEKNADDVSVHVKTISTEDLP-KDGVLIKVAYSGINYKDGLAGKAGGNIVREYPL 62

Query: 61 ILGTEVSGIVEE 72
          ILG + +G V  
Sbjct: 63 ILGIDAAGTVVS 74

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 39.4 bits (91), Expect = 7e-06
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M A   KR G P  LEL  + +P    + EV+++V A G+N  +  +R G Y      P 
Sbjct: 1  MKAWVLKRLGGP--LELVDLPEPEAE-EGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPF 57

Query: 61 ILGTEVSGI 69
          I G EV G+
Sbjct: 58 IPGMEVVGV 66

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 39.8 bits (92), Expect = 8e-06
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A       +P  +E   V  P      EV +K++A GI   + ++ SG       LP 
Sbjct: 9  CKAAVLWEEKKPFSIEEVEVAPPKA---HEVRIKMVATGICRSDDHVVSGTLV--TPLPV 63

Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
          I G E +GIVE +G+GV   +  + V
Sbjct: 64 IAGHEAAGIVESIGEGVTTVRPGDKV 89

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
            A+  +++ +P V +   +          +LV++++AG+   + ++  G+ P    LP 
Sbjct: 5  AHAMVLEKFNQPLVYKEFEISDIPR---GSILVEILSAGVCGSDVHMFRGEDPR-VPLPI 60

Query: 61 ILGTEVSGIVEEVGQGVKHF 80
          ILG E +G V EV    +  
Sbjct: 61 ILGHEGAGRVVEVNGEKRDL 80

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 9  WGEPRVLELTTVDKP------GPCLDDEVLVKVMAAGINPVETYIRSGQYP 53
          +     +E+  +D P      G  ++  V++KV++  I   + ++  G+  
Sbjct: 7  YLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT 57

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 38.1 bits (87), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 3  AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
          A +   + +P  L +  VD P      +V+V++  AG+   + ++  G +  L  
Sbjct: 2  AARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQ 54

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP 56
          + AV      +P  LE   + +  P   ++V +++   G+   + +    ++    
Sbjct: 1  IKAVGAYSAKQP--LEPMDITRREPG-PNDVKIEIAYCGVCHSDLHQVRSEWAGTV 53

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 32.6 bits (73), Expect = 0.002
 Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 5/63 (7%)

Query: 1  MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
          M             L     ++P      + +V+ +A      + +              
Sbjct: 1  MKGFAML---GINKLGWIEKERPVAG-SYDAIVRPLAVSPCTSDIHTVFEGALGDR-KNM 55

Query: 61 ILG 63
          ILG
Sbjct: 56 ILG 58

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 32.3 bits (73), Expect = 0.003
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 4  VQCKRW-------GEPRV--LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN 54
          V+ K W       G+P     EL TV+ P    + EVL++ +   ++P            
Sbjct: 2  VKAKSWTLKKHFQGKPTQSDFELKTVELPPLK-NGEVLLEALFLSVDP----YMRIASKR 56

Query: 55 LPDLPAILGTEVSGIVE 71
          L +   ++G +V+ +VE
Sbjct: 57 LKEGAVMMGQQVARVVE 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.94
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.93
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.93
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.93
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.92
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.92
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.92
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.92
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.9
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.9
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.9
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.9
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.9
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.9
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.89
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.87
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.87
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.83
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.81
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.62
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.6
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	91.92
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	90.72
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	81.14
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	80.98

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-27  Score=137.31  Aligned_cols=89  Identities=45%  Similarity=0.700  Sum_probs=82.6

Q ss_pred             CeEEEEcccCCCCceEEE-EecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      |||++++++|+++.+++. +.+.|. +++|||+||+++++||+.|++.+.|.++....+|.++|+|++|+|+++|+++++
T Consensus         3 MkAv~~~~~G~p~~l~~~~~~~~P~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           3 MRAVRVFEFGGPEVLKLRSDIAVPI-PKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEESSCSSGGGEEEEEEEECCC-CCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             eeEEEEEccCCcceEEEEeecCCCC-CCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            899999999999999986 679999 999999999999999999999999988766678899999999999999999999


Q ss_pred             CCCCCEEEeeC
Q psy3511          80 FKVKNIVRSSK   90 (91)
Q Consensus        80 ~~~Gd~V~~~~   90 (91)
                      |++||||++..
T Consensus        82 ~~vGdrV~~~~   92 (150)
T d1yb5a1          82 FKKGDRVFTSS   92 (150)
T ss_dssp             CCTTCEEEESC
T ss_pred             cccCccccccc
Confidence            99999998753

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=7e-26  Score=135.41  Aligned_cols=86  Identities=34%  Similarity=0.468  Sum_probs=80.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++++++++  +++++.+.|. +++|||+||+.+++||++|++.+.|.++....+|.++|||++|+|+++|++++.|
T Consensus         6 MkA~v~~~~g~p--l~l~evp~P~-~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~~   82 (175)
T d1llua1           6 MKAAVVHAYGAP--LRIEEVKVPL-PGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRV   82 (175)
T ss_dssp             EEEEEBCSTTSC--CEEEEEECCC-CCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             cEEEEEEeCCCC--CEEEEeECCC-CCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCcccc
Confidence            899999988876  8899999999 9999999999999999999999999887666789999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+..
T Consensus        83 ~~GdrV~~~   91 (175)
T d1llua1          83 KEGDRVGIP   91 (175)
T ss_dssp             CTTCEEEEC
T ss_pred             ccCCEEEec
Confidence            999999753

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=8.3e-26  Score=135.30  Aligned_cols=86  Identities=35%  Similarity=0.543  Sum_probs=78.5

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-------CCCCCcccccceEEEEEEe
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-------LPDLPAILGTEVSGIVEEV   73 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-------~~~~p~~~g~e~~G~V~~v   73 (91)
                      |||+++.++|++  |++++.+.|+ +++|||+||+.+++||++|++++.|.++.       ...+|.++|||++|+|+++
T Consensus         1 MKA~~~~~~G~p--l~i~dv~~P~-p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~   77 (177)
T d1jvba1           1 MRAVRLVEIGKP--LSLQEIGVPK-PKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (177)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCC-CCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEEeCCCC--CEEEEeeCCC-CCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeee
Confidence            999999999877  8999999999 99999999999999999999999986532       2368899999999999999


Q ss_pred             CCCCCCCCCCCEEEee
Q psy3511          74 GQGVKHFKVKNIVRSS   89 (91)
Q Consensus        74 G~~~~~~~~Gd~V~~~   89 (91)
                      |+++++|++||||++.
T Consensus        78 g~~v~~~~~GdrV~~~   93 (177)
T d1jvba1          78 GDEVVGYSKGDLVAVN   93 (177)
T ss_dssp             CTTCCSCCTTCEEEEC
T ss_pred             ccCccccccCceEeee
Confidence            9999999999999764

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=4.8e-25  Score=131.23  Aligned_cols=85  Identities=41%  Similarity=0.625  Sum_probs=78.8

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++++++++  +++++.+.|. +++||||||+++++||++|++.+.+.+.....+|.++|||++|+|+++|++++.+
T Consensus         1 MkA~v~~~~g~p--l~i~~v~~P~-~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~   77 (171)
T d1rjwa1           1 MKAAVVEQFKEP--LKIKEVEKPT-ISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHL   77 (171)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             CeEEEEecCCCC--cEEEEeECCC-CCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCc
Confidence            999999988766  8999999999 9999999999999999999999887766566889999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||||..
T Consensus        78 ~vGdrV~~   85 (171)
T d1rjwa1          78 KVGDRVGI   85 (171)
T ss_dssp             CTTCEEEE
T ss_pred             eeeeEEee
Confidence            99999975

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.2e-25  Score=128.96  Aligned_cols=86  Identities=42%  Similarity=0.670  Sum_probs=79.3

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK   81 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~   81 (91)
                      +.+.++++|+++.|++++.+.|. +++|||+||+++++||+.|++++.|.++ ...+|.++|+|++|+|+++|+++++|+
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~-p~~~eVlVkv~a~~in~~D~~~~~G~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~   79 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPAD-PAENEIQVENKAIGINFIDTYIRSGLYP-PPSLPSGLGTEAAGIVSKVGSGVKHIK   79 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHHTSSC-CSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             eEEEEcccCCCceeEEEEecCCC-CCCCEEEEEEEEecccceeeeeecCCCC-CCcceeeeccccccceeeeeeeccccc
Confidence            56788999999999999999999 9999999999999999999999999875 357889999999999999999999999


Q ss_pred             CCCEEEee
Q psy3511          82 VKNIVRSS   89 (91)
Q Consensus        82 ~Gd~V~~~   89 (91)
                      +||||+..
T Consensus        80 vGdrV~~~   87 (147)
T d1qora1          80 AGDRVVYA   87 (147)
T ss_dssp             TTCEEEES
T ss_pred             ccceeeee
Confidence            99999743

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.93  E-value=3.7e-25  Score=134.74  Aligned_cols=85  Identities=29%  Similarity=0.381  Sum_probs=78.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++..++++  |++++++.|+ ++++|||||+.+++||++|++.+.|.++  ..+|.++|||++|+|+++|+++.+|
T Consensus         9 ~KAav~~~~g~~--l~i~ev~~P~-p~~~eVlVkv~a~gICgsDlh~~~G~~~--~~~P~i~GHE~~G~Vv~~G~~v~~~   83 (198)
T d1p0fa1           9 CKAAVAWEPHKP--LSLETITVAP-PKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCV   83 (198)
T ss_dssp             EEEEEBSSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             EEEEEEccCCCC--CEEEEEECCC-CCCCEEEEEEEEEEEecccceeeeeccc--cccccccceeeeeeeeecCcccccC
Confidence            899999987766  9999999999 9999999999999999999999998764  3689999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||||+..+
T Consensus        84 ~~GdrV~~~~   93 (198)
T d1p0fa1          84 KPGDKVIPLF   93 (198)
T ss_dssp             CTTCEEEECS
T ss_pred             cCCCEEEEEe
Confidence            9999998753

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.92  E-value=4.2e-25  Score=134.36  Aligned_cols=85  Identities=28%  Similarity=0.365  Sum_probs=78.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++++  |++++.+.|+ ++++||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++++.+
T Consensus         9 ~KAavl~~~~~~--l~i~ev~~P~-p~~~eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~~v~~~   83 (198)
T d2jhfa1           9 CKAAVLWEEKKP--FSIEEVEVAP-PKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTV   83 (198)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSC
T ss_pred             EEEEEEecCCCC--CEEEEEECCC-CCCCEEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEecCccccCc
Confidence            799999887766  9999999999 99999999999999999999999997653  689999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||||+...
T Consensus        84 ~vGdrV~v~~   93 (198)
T d2jhfa1          84 RPGDKVIPLF   93 (198)
T ss_dssp             CTTCEEEECS
T ss_pred             CCCCEEEEee
Confidence            9999998653

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.92  E-value=3e-25  Score=135.31  Aligned_cols=85  Identities=28%  Similarity=0.371  Sum_probs=78.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++++  +++++.+.|. |+++|||||+.++|||++|++.+.|.++  ..+|.++|||++|+|+++|+++++|
T Consensus         9 ~KAaV~~~~g~p--l~i~evp~P~-p~~geVlVkv~a~gic~sD~~~~~G~~~--~~~P~v~GHE~~G~V~~vG~~V~~~   83 (202)
T d1e3ia1           9 CKAAIAWKTGSP--LCIEEIEVSP-PKACEVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGIVESVGPGVTNF   83 (202)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHTTCTTSC--CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             EEEEEEccCCCC--CEEEEEECCC-CCCCEEEEEEEEEEEeccccceeeeecc--cccccccccccceEEeeecCCceec
Confidence            789999988877  8999999999 9999999999999999999999998764  3678999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||||++.+
T Consensus        84 ~~GdrV~~~~   93 (202)
T d1e3ia1          84 KPGDKVIPFF   93 (202)
T ss_dssp             CTTCEEEECS
T ss_pred             cCCCEEEEEe
Confidence            9999998753

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.92  E-value=6.8e-25  Score=131.61  Aligned_cols=84  Identities=23%  Similarity=0.154  Sum_probs=74.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      ||++++..+   .++++++.+.|. ++++||+||+++++||++|++.+.+... ..++|.++|||++|+|+++|+++++|
T Consensus         1 MKa~v~~~~---~~l~i~e~p~P~-~~~~eVlIkv~a~gic~sD~~~~~~~~~-~~~~P~i~GhE~~G~V~~vG~~v~~~   75 (177)
T d1jqba1           1 MKGFAMLGI---NKLGWIEKERPV-AGSYDAIVRPLAVSPCTSDIHTVFEGAL-GDRKNMILGHEAVGEVVEVGSEVKDF   75 (177)
T ss_dssp             CEEEEEEET---TEEEEEECCCCC-CCTTCEEEEEEEECCCHHHHHHHHHCTT-CCCSSEECCCCEEEEEEEECTTCCSC
T ss_pred             CeEEEEEeC---CCeEEEEeeCCC-CCCCEEEEEEEEEecCCCcccccccCCC-CCCCCccCcceeeEEeeeccccccee
Confidence            999999965   459999999999 9999999999999999999977654432 23678999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+..
T Consensus        76 ~vGdrV~v~   84 (177)
T d1jqba1          76 KPGDRVIVP   84 (177)
T ss_dssp             CTTCEEEEC
T ss_pred             cCCCcEEEe
Confidence            999999854

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-24  Score=130.69  Aligned_cols=84  Identities=19%  Similarity=0.298  Sum_probs=77.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+....++++  |++++++.|+ |++||||||+.+++||++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|
T Consensus         1 m~a~~~~~~~~p--l~i~ev~~P~-pg~geVlVkv~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~vG~~V~~~   76 (179)
T d1uufa1           1 IKAVGAYSAKQP--LEPMDITRRE-PGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKY   76 (179)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCC-CCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CeEEEEccCCCC--CEEEEecCCC-CCCCEEEEEEEEECCCCCcceeeeeeecc-ccccccccccccccchhhccccccC
Confidence            899999887766  9999999999 99999999999999999999999987653 4789999999999999999999999


Q ss_pred             CCCCEEEe
Q psy3511          81 KVKNIVRS   88 (91)
Q Consensus        81 ~~Gd~V~~   88 (91)
                      ++||+|..
T Consensus        77 ~vGdrV~v   84 (179)
T d1uufa1          77 APGDLVGV   84 (179)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999964

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.92  E-value=9.7e-25  Score=132.53  Aligned_cols=84  Identities=37%  Similarity=0.542  Sum_probs=76.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |+|+++.+.+++  |++++.+.|+ +++||||||+.+++||++|++.+.|.++  .++|.++|||++|+|+++|+++++|
T Consensus         4 ~~Aav~~~~g~~--l~l~~v~~P~-p~~geVlVkv~a~gic~sD~~~~~G~~~--~~~P~i~GHE~~G~V~~vG~~v~~~   78 (194)
T d1f8fa1           4 IIAAVTPCKGAD--FELQALKIRQ-PQGDEVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGIIEAIGPNVTEL   78 (194)
T ss_dssp             EEEEEBCSTTCC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             eEEEEEcCCCCC--cEEEEeeCCC-CCCCEEEEEEEEEEecCchHhhhhhccc--ccCCcccccceEEEeeecCccceeE
Confidence            678888876666  9999999999 9999999999999999999999998764  3689999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+..
T Consensus        79 ~vGDrVv~~   87 (194)
T d1f8fa1          79 QVGDHVVLS   87 (194)
T ss_dssp             CTTCEEEEC
T ss_pred             ccCceeeee
Confidence            999999753

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=131.62  Aligned_cols=85  Identities=31%  Similarity=0.449  Sum_probs=78.6

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++++  |++++.|.|+ |+++|||||++++|||++|++++.|.+.. ..+|+++|||++|+|+++|++++.+
T Consensus         7 ~kAav~~~~g~~--l~i~evp~P~-p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V~~~   82 (197)
T d2fzwa1           7 CKAAVAWEAGKP--LSIEEIEVAP-PKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKL   82 (197)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             EEEEEEccCCCC--CEEEEEECCC-CCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCceec
Confidence            799999988877  9999999999 99999999999999999999999997643 4688999999999999999999999


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||||+..
T Consensus        83 ~~GdrV~v~   91 (197)
T d2fzwa1          83 KAGDTVIPL   91 (197)
T ss_dssp             CTTCEEEEC
T ss_pred             CCCCEEEEc
Confidence            999999865

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=1.5e-23  Score=124.97  Aligned_cols=87  Identities=28%  Similarity=0.432  Sum_probs=76.8

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      ||+++.+++++  |++++.+.|+++++||||||+.+++||++|++.+.|.+..  .+.+|.++|||++|+|+++|+++++
T Consensus         1 kA~~~~~~g~p--l~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~   78 (171)
T d1h2ba1           1 KAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEG   78 (171)
T ss_dssp             CEEEESSTTSC--CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred             CEEEEEeCCCC--CEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCc
Confidence            78999998887  8999999998236899999999999999999999887632  2467899999999999999999999


Q ss_pred             CCCCCEEEeeC
Q psy3511          80 FKVKNIVRSSK   90 (91)
Q Consensus        80 ~~~Gd~V~~~~   90 (91)
                      |++||||++.+
T Consensus        79 ~~~GdrV~~~~   89 (171)
T d1h2ba1          79 LEKGDPVILHP   89 (171)
T ss_dssp             CCTTCEEEECS
T ss_pred             CCCCCEEEEcC
Confidence            99999998753

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.4e-23  Score=125.01  Aligned_cols=86  Identities=19%  Similarity=0.276  Sum_probs=77.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC-CC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV-KH   79 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~-~~   79 (91)
                      ||++.+.+++....+++.+.+.++ ++++|||||+.++|||++|++.+.|.++ ...+|+++|||++|+|+++|+++ +.
T Consensus         7 ~ka~~~~~~~~~~~~~~~~~~p~p-~~~~eVlVkv~a~giC~sDl~~~~g~~~-~~~~P~i~GHE~~G~Vv~vG~~v~~~   84 (192)
T d1piwa1           7 FEGIAIQSHEDWKNPKKTKYDPKP-FYDHDIDIKIEACGVCGSDIHCAAGHWG-NMKMPLVVGHEIVGKVVKLGPKSNSG   84 (192)
T ss_dssp             EEEEEECCSSSTTSCEEEEECCCC-CCTTEEEEEEEEEEECHHHHHHHTTTTS-CCCSSEECCCCEEEEEEEECTTCCSS
T ss_pred             eEEEEEeCCCcCCcceEeeccCCC-CCCCeEEEEEeeeCCCcchHHHHcCCCC-CCCCCcCcccccccchhhcccccccc
Confidence            799999999888889988888777 8999999999999999999999998765 34788999999999999999987 57


Q ss_pred             CCCCCEEEe
Q psy3511          80 FKVKNIVRS   88 (91)
Q Consensus        80 ~~~Gd~V~~   88 (91)
                      +++||||..
T Consensus        85 ~k~GdrV~~   93 (192)
T d1piwa1          85 LKVGQRVGV   93 (192)
T ss_dssp             CCTTCEEEE
T ss_pred             cCCCCeeeE
Confidence            999999964

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.2e-23  Score=125.64  Aligned_cols=85  Identities=24%  Similarity=0.375  Sum_probs=76.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC--
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK--   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~--   78 (91)
                      |||+++.+++++  |++++++.|. ++++|||||+.++|||++|++.+.|.++. .++|+++|||++|+|+++|++++  
T Consensus         5 ~kA~v~~~~~~p--l~i~ev~~P~-~~~~evlVkv~a~gIC~sD~~~~~G~~~~-~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           5 AHAMVLEKFNQP--LVYKEFEISD-IPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             EEEEEEecCCCC--cEEEEeeCCC-CCCCEEEEEEEEECCCCCchhheeccCCc-cccccccceeeeeeeeEEecccccc
Confidence            689999988776  9999999999 99999999999999999999999997653 36899999999999999999986  


Q ss_pred             ---CCCCCCEEEee
Q psy3511          79 ---HFKVKNIVRSS   89 (91)
Q Consensus        79 ---~~~~Gd~V~~~   89 (91)
                         .+++||+|+..
T Consensus        81 ~~~~~~~Gd~V~~~   94 (184)
T d1vj0a1          81 NGELLKPGDLIVWN   94 (184)
T ss_dssp             TSCBCCTTCEEEEC
T ss_pred             ccccccceeeeEec
Confidence               46899999864

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.90  E-value=3.9e-23  Score=123.70  Aligned_cols=84  Identities=27%  Similarity=0.330  Sum_probs=71.5

Q ss_pred             eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCCC
Q psy3511           2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKH   79 (91)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~~   79 (91)
                      .++++..   +++|++++.+.|+ ++++|||||+++++||++|++.+.+.+..  ..+.|.++|||++|+|+++|+++++
T Consensus         3 maAVl~g---~~~l~~~e~~~P~-~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~   78 (178)
T d1e3ja1           3 LSAVLYK---QNDLRLEQRPIPE-PKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   78 (178)
T ss_dssp             EEEEEEE---TTEEEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             eEEEEEc---CCcEEEEEeECCC-CCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCC
Confidence            3455553   4569999999999 99999999999999999999988775422  2367889999999999999999999


Q ss_pred             CCCCCEEEee
Q psy3511          80 FKVKNIVRSS   89 (91)
Q Consensus        80 ~~~Gd~V~~~   89 (91)
                      |++||||+..
T Consensus        79 ~~~GdrV~~~   88 (178)
T d1e3ja1          79 LKKGDRVAVE   88 (178)
T ss_dssp             CCTTCEEEEC
T ss_pred             CCCCCEEEEC
Confidence            9999999764

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.90  E-value=4e-23  Score=125.68  Aligned_cols=86  Identities=26%  Similarity=0.336  Sum_probs=77.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+.+.+  +++++.+.|+ ++++||+||+.++|||++|++.+.+... ...+|.++|||++|+|+++|+++++|
T Consensus         9 ~kAav~~~~~~p--l~i~ev~~P~-p~~~eVlIkv~a~giCgsD~~~~~g~~~-~~~~p~i~GhE~~G~v~~vG~~v~~~   84 (199)
T d1cdoa1           9 CKAAVAWEANKP--LVIEEIEVDV-PHANEIRIKIIATGVCHTDLYHLFEGKH-KDGFPVVLGHEGAGIVESVGPGVTEF   84 (199)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECC-CCTTEEEEEEEEEECCHHHHHHHHTTCC-TTSCSEECCCCEEEEEEEECTTCCSC
T ss_pred             EEEEEEecCCCC--cEEEEEECCC-CCCCEEEEEEEEEEEecchhhhhhhccc-ccccccccccccceEEEEEcCCCcee
Confidence            468888887766  8999999999 9999999999999999999999988654 34788999999999999999999999


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||||+...
T Consensus        85 ~~GdrV~~~~   94 (199)
T d1cdoa1          85 QPGEKVIPLF   94 (199)
T ss_dssp             CTTCEEEECS
T ss_pred             cCCCEEEEee
Confidence            9999998753

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=125.33  Aligned_cols=85  Identities=29%  Similarity=0.345  Sum_probs=74.0

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--CCCCCCcccccceEEEEEEeCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVK   78 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~~~~p~~~g~e~~G~V~~vG~~~~   78 (91)
                      |+|++++.   +++|++++.+.|+ ++++||+||+.+++||++|++.+.+...  ....+|.++|||++|+|+++|++++
T Consensus         8 ~~a~V~~g---p~~l~l~evp~P~-p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~   83 (185)
T d1pl8a1           8 NLSLVVHG---PGDLRLENYPIPE-PGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (185)
T ss_dssp             CEEEEEEE---TTEEEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             CEEEEEeC---CCeEEEEEeECCC-CCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecccee
Confidence            57888884   4569999999999 9999999999999999999999876532  2236788999999999999999999


Q ss_pred             CCCCCCEEEee
Q psy3511          79 HFKVKNIVRSS   89 (91)
Q Consensus        79 ~~~~Gd~V~~~   89 (91)
                      +|++||||+..
T Consensus        84 ~~~~GdrV~~~   94 (185)
T d1pl8a1          84 HLKPGDRVAIE   94 (185)
T ss_dssp             SCCTTCEEEEC
T ss_pred             eecccccceec
Confidence            99999999864

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=9.6e-23  Score=124.24  Aligned_cols=83  Identities=23%  Similarity=0.403  Sum_probs=73.2

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCC-------CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEe
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPC-------LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV   73 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~-------~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~v   73 (91)
                      +||+++..++   .+++++.+.|. +       .++||+||+.+++||++|++.+.|.++  ..+|.++|||++|+|+++
T Consensus         2 ~kA~v~~~~~---~le~~e~~~P~-~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~--~~~P~v~GHE~~G~Vv~v   75 (201)
T d1kola1           2 NRGVVYLGSG---KVEVQKIDYPK-MQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT--AQVGLVLGHEITGEVIEK   75 (201)
T ss_dssp             EEEEEEEETT---EEEEEEECCCC-SBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCCCCEEEEEEEE
T ss_pred             cEEEEEeCCC---ceEEEEecCCc-ccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc--cccceeccceeeeeeecc
Confidence            5899999654   59999999886 4       469999999999999999999998765  368999999999999999


Q ss_pred             CCCCCCCCCCCEEEee
Q psy3511          74 GQGVKHFKVKNIVRSS   89 (91)
Q Consensus        74 G~~~~~~~~Gd~V~~~   89 (91)
                      |+++++|++||||...
T Consensus        76 G~~V~~~~vGdrV~v~   91 (201)
T d1kola1          76 GRDVENLQIGDLVSVP   91 (201)
T ss_dssp             CTTCCSCCTTCEEECC
T ss_pred             ccccccccccceeEEe
Confidence            9999999999999754

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.9e-22  Score=117.60  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++.+++++..+++++.+.|+ +++|||+|||+|+|||+.|++.+.|.++....+|.++|+|++|+|+++|.  ..|
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~-~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~   77 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESR-LPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRF   77 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGG-SCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCC-CCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCc
Confidence            999999999999889999999999 99999999999999999999999998876668899999999999999766  479


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                      ++||+|+..
T Consensus        78 ~~g~~v~~~   86 (146)
T d1o89a1          78 HAGQEVLLT   86 (146)
T ss_dssp             CTTCEEEEE
T ss_pred             cceeeEEee
Confidence            999999864

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=3.7e-22  Score=116.88  Aligned_cols=87  Identities=15%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++++++++..+++++.+.|+ +++||||||++++|||++|++.+.|.++.....|.++|+|++|+|++  ..+..|
T Consensus         4 ~KA~v~~~~~~~~~~~i~~v~~P~-~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~   80 (152)
T d1xa0a1           4 FQAFVVNKTETEFTAGVQTISMDD-LPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRF   80 (152)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEGGG-SCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSC
T ss_pred             eEEEEEEecCCceEEEEEEccCCC-CCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCcc
Confidence            799999999988778899999999 99999999999999999999999888766667899999999999999  667789


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||+|+...
T Consensus        81 ~~g~~v~~~~   90 (152)
T d1xa0a1          81 REGDEVIATG   90 (152)
T ss_dssp             CTTCEEEEES
T ss_pred             ccCCEEEEec
Confidence            9999998653

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.1e-21  Score=112.54  Aligned_cols=75  Identities=35%  Similarity=0.469  Sum_probs=69.1

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||++++++|++  +++++.+.|. +++|||+||+++++||+.|++.+.|.+.....+|+++|+|++|+|          
T Consensus         1 MkA~~~~~~G~~--l~~~e~~~p~-p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V----------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP--LELVDLPEPE-AEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV----------   67 (131)
T ss_dssp             CEEEEECSTTSC--EEEEECCCCC-CCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE----------
T ss_pred             CcEEEEccCCCC--CEEEEccCCC-CCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee----------
Confidence            999999998876  8999999999 999999999999999999999999988766689999999999999          


Q ss_pred             CCCCEEEee
Q psy3511          81 KVKNIVRSS   89 (91)
Q Consensus        81 ~~Gd~V~~~   89 (91)
                       +||+|+++
T Consensus        68 -vGd~V~~~   75 (131)
T d1iz0a1          68 -EGRRYAAL   75 (131)
T ss_dssp             -TTEEEEEE
T ss_pred             -ccceEEEE
Confidence             39999865

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=2e-20  Score=110.45  Aligned_cols=87  Identities=22%  Similarity=0.287  Sum_probs=79.3

Q ss_pred             CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511           1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF   80 (91)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~   80 (91)
                      |||+++++++....+++++++.|+ +++|||||||+|+|||++|++.+.|.++.....|.++|+|++|+|++  +.+..+
T Consensus         4 ~ka~~~~~~g~~~~l~~~~v~~p~-l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~~   80 (162)
T d1tt7a1           4 FQALQAEKNADDVSVHVKTISTED-LPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPRF   80 (162)
T ss_dssp             EEEEEECCGGGSCCCEEEEEESSS-SCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTTC
T ss_pred             EEEEEEEecCCCeEEEEEEcCCCC-CCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--cccccc
Confidence            799999999988899999999999 99999999999999999999999998776567788999999999999  667789


Q ss_pred             CCCCEEEeeC
Q psy3511          81 KVKNIVRSSK   90 (91)
Q Consensus        81 ~~Gd~V~~~~   90 (91)
                      ++||+|+...
T Consensus        81 ~~g~~v~~~~   90 (162)
T d1tt7a1          81 AEGDEVIATS   90 (162)
T ss_dssp             CTTCEEEEES
T ss_pred             ccceeeEeee
Confidence            9999998653

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.81  E-value=2.9e-19  Score=105.95  Aligned_cols=88  Identities=31%  Similarity=0.413  Sum_probs=74.8

Q ss_pred             CeEEEEcccCCCC-ce--EEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC---------CCCcccccceEE
Q psy3511           1 MLAVQCKRWGEPR-VL--ELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP---------DLPAILGTEVSG   68 (91)
Q Consensus         1 m~a~~~~~~~~~~-~~--~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~---------~~p~~~g~e~~G   68 (91)
                      |||+++.++|+|. .+  +..+.+.|. +++||||||+++++||++|+++++|.++...         ..|.++|+|++|
T Consensus         4 ~kA~v~~~~G~p~~~l~l~~~~~p~p~-~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g   82 (175)
T d1gu7a1           4 AQAVLYTQHGEPKDVLFTQSFEIDDDN-LAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLF   82 (175)
T ss_dssp             EEEEEESSCSCHHHHCEEEEEEECTTS-CCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEE
T ss_pred             eEEEEEccCCCcccccEEEEEECCCCC-CCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccccc
Confidence            6999999998874 34  445777788 8999999999999999999999998764321         456789999999


Q ss_pred             EEEEeCCCCCCCCCCCEEEee
Q psy3511          69 IVEEVGQGVKHFKVKNIVRSS   89 (91)
Q Consensus        69 ~V~~vG~~~~~~~~Gd~V~~~   89 (91)
                      +|++.|.++..++.||+|...
T Consensus        83 ~V~~~~~~~~~~~~g~~v~~~  103 (175)
T d1gu7a1          83 EVIKVGSNVSSLEAGDWVIPS  103 (175)
T ss_dssp             EEEEECTTCCSCCTTCEEEES
T ss_pred             ccccccccccccccccceecc
Confidence            999999999999999999754

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.60  E-value=1.4e-14  Score=83.96  Aligned_cols=81  Identities=22%  Similarity=0.261  Sum_probs=66.0

Q ss_pred             eEEEEccc--CCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511           2 LAVQCKRW--GEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV   77 (91)
Q Consensus         2 ~a~~~~~~--~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~   77 (91)
                      |+|++.++  |.|  ++|++++.+.|+ +++||+|||++|.|+++..+..+..     .+.+.++..+.+|+|++  |+.
T Consensus         5 k~~vl~~~P~G~P~~~~f~l~e~~ip~-~~~gevLvk~~~~svDp~~R~~~~~-----~~~g~~~~g~~vg~Vv~--S~~   76 (147)
T d1v3va1           5 KSWTLKKHFQGKPTQSDFELKTVELPP-LKNGEVLLEALFLSVDPYMRIASKR-----LKEGAVMMGQQVARVVE--SKN   76 (147)
T ss_dssp             EEEEESSCCCSSCCGGGEEEEEEECCC-CCTTCEEEEEEEEECCTHHHHHGGG-----SCTTSBCCCCEEEEEEE--ESC
T ss_pred             EEEEEccCCCCCCcccceEEEEEECCC-CCCCEEEEEEEEEeEcccccccccc-----cccCCccccceEEEEEE--eCC
Confidence            67888775  544  569999999999 9999999999999999987655432     23445677889999998  778


Q ss_pred             CCCCCCCEEEeeC
Q psy3511          78 KHFKVKNIVRSSK   90 (91)
Q Consensus        78 ~~~~~Gd~V~~~~   90 (91)
                      ++|++||+|+++.
T Consensus        77 ~~f~~GD~V~g~~   89 (147)
T d1v3va1          77 SAFPAGSIVLAQS   89 (147)
T ss_dssp             TTSCTTCEEEECC
T ss_pred             CcccCCCEEEEcc
Confidence            8999999999864

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.92  E-value=0.083  Score=27.29  Aligned_cols=25  Identities=28%  Similarity=0.223  Sum_probs=19.6

Q ss_pred             ceEEEEEEeCCCCC----------CCCCCCEEEee
Q psy3511          65 EVSGIVEEVGQGVK----------HFKVKNIVRSS   89 (91)
Q Consensus        65 e~~G~V~~vG~~~~----------~~~~Gd~V~~~   89 (91)
                      ...|+|+++|++..          .+++||+|+..
T Consensus        37 ~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~   71 (99)
T d1p3ha_          37 PQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS   71 (99)
T ss_dssp             EEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred             ceEEEEEEECCceEcCCCCEecCCeeecCCEEEEc
Confidence            45799999999742          37899999754

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=90.72  E-value=0.14  Score=26.14  Aligned_cols=24  Identities=38%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             ceEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511          65 EVSGIVEEVGQGVK---------HFKVKNIVRS   88 (91)
Q Consensus        65 e~~G~V~~vG~~~~---------~~~~Gd~V~~   88 (91)
                      ...|+|+++|++..         .+++||+|+.
T Consensus        35 ~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~   67 (97)
T d1aono_          35 STRGEVLAVGNGRILENGEVKPLDVKVGDIVIF   67 (97)
T ss_dssp             CCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEE
T ss_pred             ceeEEEEEEeeeEEccCCcCccccCCCCCEEEE
Confidence            45799999998653         3789999975

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=81.14  E-value=0.25  Score=25.16  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=18.1

Q ss_pred             eEEEEEEeCCCCC---------CCCCCCEEEee
Q psy3511          66 VSGIVEEVGQGVK---------HFKVKNIVRSS   89 (91)
Q Consensus        66 ~~G~V~~vG~~~~---------~~~~Gd~V~~~   89 (91)
                      ..|+|+++|++..         .+++||+|+..
T Consensus        37 ~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~   69 (96)
T d1we3o_          37 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFA   69 (96)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEEC
T ss_pred             eEEEEeeecceEecCCCCEEEeeEEeCCEEEEc
Confidence            4689999988632         38899999753

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.98  E-value=1.4  Score=22.75  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             ceEEEEEEeCCCCCC--CCCCCEEEe
Q psy3511          65 EVSGIVEEVGQGVKH--FKVKNIVRS   88 (91)
Q Consensus        65 e~~G~V~~vG~~~~~--~~~Gd~V~~   88 (91)
                      -..|.|+++|++|..  .++|+.|..
T Consensus        42 Pl~~~viSVG~dVpe~~~kvG~~vlL   67 (107)
T d1g31a_          42 PELCVVHSVGPDVPEGFCEVGDLTSL   67 (107)
T ss_dssp             EEEEEEEEECTTSCTTSCCTTCEEEE
T ss_pred             ceeEEEEEeCCCCCHHHhccccEEEc
Confidence            368999999999984  689999864