Psyllid ID: psy3514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MSTVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Secondary Structure (PSIPRED)
ccccccccccEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEcHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHEcccccEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHcccEcHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
mstvrrcqpssirlvdnvqlkagqffrpdpgyLELLTDGLKKLYVTKILGFRDDEMCAAtvlfegdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRLtrectgrwLPVLVKLLYM
Flexible Loop (DISEMBL)
mstvrrcqpssirlvdnvqlkagqffrpdpGYLELLTDGLKKLYVTKILGFRDDEMCAATVlfegdpedvknnEDKIYSIAkryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdkTVLLCINVKkrltrectgrwlpvlvkllym
Low Complexity Region (SEG)
MSTVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Disordered region (IsUnstruct)
***********IRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLY*
Disordered Region (DISOPRED)
********PSSIRLVDNVQLKAGQFFRP*****ELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Disordered Region (DISEMBL)
*********SSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Disordered Region (DISPRO)
*STVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.886	0.214	0.542	9e-42
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.905	0.223	0.524	6e-41
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.886	0.214	0.528	1e-40
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.905	0.223	0.503	6e-40
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.905	0.228	0.5	6e-39
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.943	0.251	0.418	3e-32
O96759	611	Alkyldihydroxyacetonephos	yes	N/A	0.918	0.238	0.226	4e-06
O97157	613	Alkyldihydroxyacetonephos	N/A	N/A	0.880	0.228	0.235	4e-05

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  169 bits (427), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 102/142 (71%), Gaps = 1/142 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LF
Sbjct: 411 QRCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFET 530

Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           S PWD+ V LC NVK+R+TREC
Sbjct: 531 SAPWDRVVDLCRNVKERITREC 552

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  166 bits (420), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 1/145 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LF
Sbjct: 398 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLF 457

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+SFET
Sbjct: 458 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFET 517

Query: 124 SVPWDKTVLLCINVKKRLTRECTGR 148
           S PWD+ + LC NVK+R+ REC  R
Sbjct: 518 SAPWDRVIDLCRNVKERIRRECKER 542

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530

Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 1/145 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DG KK Y+TK  GF  +++  AT+LF
Sbjct: 397 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGFKKFYITKFKGFDPNQISVATLLF 456

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+SFET
Sbjct: 457 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFET 516

Query: 124 SVPWDKTVLLCINVKKRLTRECTGR 148
           S PWD+ + LC NVK+R+ REC  R
Sbjct: 517 SAPWDRVIDLCRNVKERIRRECKER 541

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score =  159 bits (402), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 100/144 (69%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
           RRCQP+S+RL+DN Q   GQ  +P+  +   + D +K+ YVT   G   +++CAAT+LFE
Sbjct: 364 RRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMKQRYVTSWKGIDLNQICAATLLFE 423

Query: 65  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           GD +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +SFETS
Sbjct: 424 GDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAESFETS 483

Query: 125 VPWDKTVLLCINVKKRLTRECTGR 148
           VPWD+  LLC +VK+R+  EC+ R
Sbjct: 484 VPWDRCSLLCRSVKQRVVSECSKR 507

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 101/153 (66%), Gaps = 3/153 (1%)

Query: 4   VRRCQPSSIRLVDNVQLKAGQFFR-PDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVL 62
           ++RCQP+S+RL+DN Q   GQ  +     +   L   + K+Y+T   GF+ DE+CAAT +
Sbjct: 339 IQRCQPASLRLMDNDQFVMGQALKVASDSWWADLKSSVSKMYITSWKGFKVDEICAATCV 398

Query: 63  FEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 122
           +EG+ E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFE
Sbjct: 399 YEGNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFE 458

Query: 123 TSVPWDKTVLLCINVKKRLTRECTGRWL--PVL 153
           TSVPWDK + LC NVK+ + RE   + +  PVL
Sbjct: 459 TSVPWDKVLSLCRNVKELMKREAKAQGVTHPVL 491

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum GN=eapA PE=1 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%)

Query: 9   PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 68
           P+ IR+ D  + +    ++P  G +   T  + K Y+  I  F    +C + + FEG  +
Sbjct: 348 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 407

Query: 69  DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 128
            V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  ET+V + 
Sbjct: 408 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 467

Query: 129 KTVLLCINVKKRLTRECTGRWLPVLV 154
               L  + K+   +    + +P  +
Sbjct: 468 NLQTLWKDAKQTFVKHFKDQGIPAWI 493

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei brucei PE=3 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 53/140 (37%)

Query: 3   TVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVL 62
           T +   P ++RL D    +       D G +        K Y+  + G+   ++    V 
Sbjct: 332 TRKGIHPCTMRLYDEDDTRLSFAASTDSGLVSTFFSKCFKKYIATVKGWNLSKISLVVVG 391

Query: 63  FEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 122
           FEG          ++  + + +G    G   G       Y + Y+RDFA  + F  D FE
Sbjct: 392 FEGTKAQTNCQRSELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFE 451

Query: 123 TSVPWDKTVLLCINVKKRLT 142
           TSV +   +     VKK   
Sbjct: 452 TSVLYTDAIHCWRAVKKSFA 471

Trypanosoma brucei brucei (taxid: 5702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
270012218	600	hypothetical protein TcasGA2_TC006332 [T	0.886	0.235	0.595	4e-45
380012941	611	PREDICTED: alkyldihydroxyacetonephosphat	0.899	0.234	0.548	4e-42
260835972	581	hypothetical protein BRAFLDRAFT_213219 [	0.886	0.242	0.549	1e-41
242010624	565	predicted protein [Pediculus humanus cor	0.886	0.249	0.560	1e-41
328777397	407	PREDICTED: alkyldihydroxyacetonephosphat	0.899	0.351	0.541	2e-41
147907126	627	alkyldihydroxyacetonephosphate synthase,	0.905	0.229	0.537	3e-41
187607398	626	alkyldihydroxyacetonephosphate synthase,	0.905	0.230	0.537	3e-41
332024393	526	Alkyldihydroxyacetonephosphate synthase	0.880	0.266	0.553	3e-41
327284179	634	PREDICTED: alkyldihydroxyacetonephosphat	0.886	0.222	0.556	8e-41
449506760	621	PREDICTED: alkyldihydroxyacetonephosphat	0.886	0.227	0.549	9e-41

>gi|270012218|gb|EFA08666.1| hypothetical protein TcasGA2_TC006332 [Tribolium castaneum]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 107/141 (75%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
           +RCQPSSIRL+DN Q K G   +P+  YL L+ DGLKK YVTKI GF  D MC  T+LFE
Sbjct: 351 QRCQPSSIRLMDNGQFKFGMILKPESSYLGLILDGLKKFYVTKIKGFNVDTMCVMTLLFE 410

Query: 65  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           G+  DVK  E KIYSI  ++GG+PAG++NG RGYMLT++IAYIRD A +Y  + +SFETS
Sbjct: 411 GEEADVKAQEKKIYSIGLQFGGMPAGQTNGERGYMLTFVIAYIRDLALEYEIVAESFETS 470

Query: 125 VPWDKTVLLCINVKKRLTREC 145
           VPWD+ ++LC NVK+ + +EC
Sbjct: 471 VPWDRALVLCKNVKEVIAQEC 491

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012941|ref|XP_003690531.1| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Apis florea]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 108/144 (75%), Gaps = 1/144 (0%)

Query: 6   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 65
           RCQP+SIRL+DN Q + GQ  RP+  +  L+  GLK++Y+T+I  F+ D++C AT+LFEG
Sbjct: 359 RCQPASIRLMDNEQFQFGQMLRPESNWAGLILQGLKEVYITRIKRFKWDQICVATLLFEG 418

Query: 66  DP-EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           D   +V   E +IY+IAK++ GIPAGE+NG RGY+LT++IAYIRD   D+Y + +SFETS
Sbjct: 419 DTVAEVAAQEQQIYNIAKQHNGIPAGETNGERGYILTFVIAYIRDLGLDFYIVAESFETS 478

Query: 125 VPWDKTVLLCINVKKRLTRECTGR 148
           V W +T+ LC NVK R+TREC  R
Sbjct: 479 VSWSRTLSLCRNVKSRVTRECYSR 502

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260835972|ref|XP_002612981.1| hypothetical protein BRAFLDRAFT_213219 [Branchiostoma floridae] gi|229298363|gb|EEN68990.1| hypothetical protein BRAFLDRAFT_213219 [Branchiostoma floridae]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC PSSIRL+DN+Q + GQ  +P  G +     DGLKK+Y+TK  GF  +E+C AT+LF
Sbjct: 327 QRCAPSSIRLMDNMQFQFGQALKPQAGSIFTSFVDGLKKMYITKWKGFDPNELCVATLLF 386

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EG  E+V   E ++Y IA ++ G+PAGE NG+RGYMLT++IAY+RD   ++Y + +SFET
Sbjct: 387 EGAKEEVLAQEKRVYEIASQFRGLPAGEENGQRGYMLTFVIAYLRDLGLEHYIVSESFET 446

Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           SVPWD+ + LC NVK+RLTREC
Sbjct: 447 SVPWDRVLDLCRNVKERLTREC 468

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242010624|ref|XP_002426062.1| predicted protein [Pediculus humanus corporis] gi|212510084|gb|EEB13324.1| predicted protein [Pediculus humanus corporis]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 103/141 (73%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
            R QPSSIRL+DN Q K GQ  RP   Y  ++ DG+KK Y+T I  F  ++MC  T+LFE
Sbjct: 314 HRYQPSSIRLMDNEQFKFGQSLRPTSNYFGVILDGIKKTYITTIKKFDVNKMCVTTLLFE 373

Query: 65  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           G+ ++++  E +IY IAK +GGIPAGE NG+RGY LT++IAYIRDFA D+    +SFETS
Sbjct: 374 GNAKEIEIQEKRIYEIAKTFGGIPAGEKNGQRGYTLTFVIAYIRDFALDFKIFAESFETS 433

Query: 125 VPWDKTVLLCINVKKRLTREC 145
           VPWD+ + LC NVK R+T+EC
Sbjct: 434 VPWDRALALCNNVKFRVTKEC 454

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777397|ref|XP_003249334.1| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Apis mellifera]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 107/144 (74%), Gaps = 1/144 (0%)

Query: 6   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 65
           RCQP+SIRL+DN Q + GQ  RP+  +  L+  GLK++Y+T+I  F+ D++C AT+LFEG
Sbjct: 155 RCQPASIRLMDNEQFQFGQMLRPESNWPGLILQGLKEVYITRIKRFKWDQICVATLLFEG 214

Query: 66  DP-EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           D   +V   E +IY+IAK++ GIPAGE+NG RGY+LT++IAYIRD   D+Y + +SFETS
Sbjct: 215 DTVAEVAAQEQQIYNIAKQHNGIPAGETNGERGYILTFVIAYIRDLGLDFYIVAESFETS 274

Query: 125 VPWDKTVLLCINVKKRLTRECTGR 148
           V W +T+ LC NVK R+ REC  R
Sbjct: 275 VSWSRTLSLCRNVKSRVIRECYSR 298

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|147907126|ref|NP_001086573.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus laevis] gi|49903684|gb|AAH76825.1| Agps-prov protein [Xenopus laevis]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++C AT+LF
Sbjct: 380 QRCAPASIRLMDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNQLCVATLLF 439

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFET
Sbjct: 440 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYLIGESFET 499

Query: 124 SVPWDKTVLLCINVKKRLTRECTGR 148
           SVPWD+ + LC NVK+R+ REC  R
Sbjct: 500 SVPWDRVLDLCRNVKERIVRECKER 524

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|187607398|ref|NP_001120301.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus (Silurana) tropicalis] gi|169641958|gb|AAI60639.1| LOC100145360 protein [Xenopus (Silurana) tropicalis]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++C AT+LF
Sbjct: 379 QRCAPASIRLMDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNQLCVATLLF 438

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFET
Sbjct: 439 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYVIGESFET 498

Query: 124 SVPWDKTVLLCINVKKRLTRECTGR 148
           SVPWD+ + LC NVK+R+ REC  R
Sbjct: 499 SVPWDRVLDLCRNVKERIVRECKER 523

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332024393|gb|EGI64591.1| Alkyldihydroxyacetonephosphate synthase [Acromyrmex echinatior]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 6   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 65
           RCQP+SIRL+DN Q + GQ  RP+  +  L+  GLK +Y+T+I GF+ D++C AT+L EG
Sbjct: 274 RCQPASIRLMDNEQFQMGQTLRPESSWGGLILQGLKHMYITRIKGFQWDQICVATLLMEG 333

Query: 66  D-PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           D  ED+   E KIY IA +YGGIPAGE+NG RGYMLT++IAYIRD   +Y  + +SFETS
Sbjct: 334 DVAEDIAAQERKIYKIANKYGGIPAGEANGERGYMLTFVIAYIRDLGIEYNVLAESFETS 393

Query: 125 VPWDKTVLLCINVKKRLTREC 145
           V W++ + LC NVK R+ R+C
Sbjct: 394 VSWNRALSLCRNVKSRVARDC 414

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327284179|ref|XP_003226816.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Anolis carolinensis]

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 102/142 (71%), Gaps = 1/142 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P        L DGLKK Y+TK  GF  + +C AT+LF
Sbjct: 387 QRCAPASIRLMDNEQFQFGHALKPQVASIFTSLLDGLKKFYITKFKGFDPNLLCVATLLF 446

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAYIRD   DYY IG+SFET
Sbjct: 447 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYIRDMGLDYYIIGESFET 506

Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           SVPWD+ + LC NVK+R+ REC
Sbjct: 507 SVPWDRVLDLCRNVKERIAREC 528

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449506760|ref|XP_002196918.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Taeniopygia guttata]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 101/142 (71%), Gaps = 1/142 (0%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRLVDN Q + G   +P          DGLKK Y+TK  GF  + +C AT+LF
Sbjct: 374 QRCAPASIRLVDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNILCVATLLF 433

Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFET
Sbjct: 434 EGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGESFET 493

Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           SVPWD+ + LC NVK+R+ REC
Sbjct: 494 SVPWDRVLDLCRNVKERIVREC 515

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.886	0.221	0.549	4.3e-40
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.886	0.214	0.542	2.8e-39
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.886	0.244	0.535	3.7e-39
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.886	0.215	0.535	5.7e-39
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.886	0.212	0.535	6.4e-39
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.886	0.218	0.535	6.9e-39
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.886	0.201	0.535	8.9e-39
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.905	0.223	0.524	1.9e-38
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.886	0.214	0.528	3.7e-38
ZFIN|ZDB-GENE-031118-14	629	agps "alkylglycerone phosphate	0.905	0.228	0.524	4.4e-38

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 429 (156.1 bits), Expect = 4.3e-40, P = 4.3e-40
 Identities = 78/142 (54%), Positives = 102/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRLVDN Q + G   +P    +     DGLKK Y+TK  GF  + +C AT+LF
Sbjct:   391 QRCAPASIRLVDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNVLCVATLLF 450

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFET
Sbjct:   451 EGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGESFET 510

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             SVPWD+ + LC NVK+R+ REC
Sbjct:   511 SVPWDRVLDLCRNVKERIVREC 532

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 2.8e-39, P = 2.8e-39
 Identities = 77/142 (54%), Positives = 103/142 (72%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   411 QRCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFET
Sbjct:   471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFET 530

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+TREC
Sbjct:   531 SAPWDRVVDLCRNVKERITREC 552

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/142 (53%), Positives = 101/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q   G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   329 QRCAPASIRLMDNEQFHFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 388

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFET
Sbjct:   389 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFET 448

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+TREC
Sbjct:   449 SAPWDRVVDLCRNVKERITREC 470

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 420 (152.9 bits), Expect = 5.7e-39, P = 5.7e-39
 Identities = 76/142 (53%), Positives = 102/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   406 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLTVATLLF 465

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFET
Sbjct:   466 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFET 525

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+TREC
Sbjct:   526 SAPWDRVVDLCRNVKERITREC 547

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 420 (152.9 bits), Expect = 6.4e-39, P = 6.4e-39
 Identities = 76/142 (53%), Positives = 102/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   416 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLTVATLLF 475

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFET
Sbjct:   476 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFET 535

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+TREC
Sbjct:   536 SAPWDRVVDLCRNVKERITREC 557

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 419 (152.6 bits), Expect = 6.9e-39, P = 6.9e-39
 Identities = 76/142 (53%), Positives = 102/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   439 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 498

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFET
Sbjct:   499 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGESFET 558

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+TREC
Sbjct:   559 SAPWDRVVDLCRNVKERITREC 580

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 420 (152.9 bits), Expect = 8.9e-39, P = 8.9e-39
 Identities = 76/142 (53%), Positives = 102/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   412 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLTVATLLF 471

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFET
Sbjct:   472 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFET 531

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+TREC
Sbjct:   532 SAPWDRVVDLCRNVKERITREC 553

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 415 (151.1 bits), Expect = 1.9e-38, P = 1.9e-38
 Identities = 76/145 (52%), Positives = 102/145 (70%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   398 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLF 457

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+SFET
Sbjct:   458 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFET 517

Query:   124 SVPWDKTVLLCINVKKRLTRECTGR 148
             S PWD+ + LC NVK+R+ REC  R
Sbjct:   518 SAPWDRVIDLCRNVKERIRRECKER 542

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 413 (150.4 bits), Expect = 3.7e-38, P = 3.7e-38
 Identities = 75/142 (52%), Positives = 101/142 (71%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LF
Sbjct:   411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFET
Sbjct:   471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530

Query:   124 SVPWDKTVLLCINVKKRLTREC 145
             S PWD+ V LC NVK+R+ REC
Sbjct:   531 SAPWDRVVDLCRNVKERIRREC 552

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

ZFIN|ZDB-GENE-031118-14 agps "alkylglycerone phosphate synthase" [Danio rerio (taxid:7955)]

 Score = 411 (149.7 bits), Expect = 4.4e-38, P = 4.4e-38
 Identities = 76/145 (52%), Positives = 100/145 (68%)

Query:     5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
             +RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF    +C AT+LF
Sbjct:   382 QRCAPASIRLMDNEQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPHHLCVATLLF 441

Query:    64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
             EGD   V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY I +SFET
Sbjct:   442 EGDRGKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYVIDESFET 501

Query:   124 SVPWDKTVLLCINVKKRLTRECTGR 148
             SVPWD+ + LC NVK+R+ REC  R
Sbjct:   502 SVPWDRVLDLCRNVKERIIRECKER 526

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5034	0.9056	0.2236	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.5422	0.8867	0.2142	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.5281	0.8867	0.2142	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5241	0.9056	0.2232	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
pfam02913	247	pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t	5e-08

>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 30/150 (20%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
               P+++ L+D   L                         T  LG   D   A  V FE
Sbjct: 28  SGIGPAALELMDKAALDLV--------------------LGTLGLGLPRDAPAALLVEFE 67

Query: 65  GDPEDVKNNEDKIYSIAKRYGGIPAG--------ESNGRRGYMLTYIIAYIRDFACDYYF 116
           G+ E+V   E    ++     G  AG            R      Y +  +RD       
Sbjct: 68  GNDEEV-VEERLEAAVEAILEGAGAGDVVVAEDEAERERLWRARKYAMP-LRDALGGAGP 125

Query: 117 IGDSFETSVPWDKTVLLCINVKKRLTRECT 146
           +  + + SVPW +   L  ++K+ L +   
Sbjct: 126 LVFTEDVSVPWSRLPDLVADIKELLAKYGL 155

This domain has a ferredoxin-like fold. Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG1233|consensus	613		100.0
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	99.16
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	98.71
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	98.42
PLN02805	555	D-lactate dehydrogenase [cytochrome]	98.29
COG3286	204	Uncharacterized protein conserved in archaea [Func	91.37

>KOG1233|consensus

Probab=100.00  E-value=3.6e-39  Score=278.20  Aligned_cols=153  Identities=47%  Similarity=0.891  Sum_probs=148.2

Q ss_pred             ccCCCCCCeeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHH
Q psy3514           3 TVRRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA   81 (159)
Q Consensus         3 aq~~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~   81 (159)
                      |.++++|+++||+||+||.|+++|+|. +++++.++++++++|+++|||||.+++|.+++.|||+.++|+++++++++|+
T Consensus       364 A~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre~V~qhE~~~y~iA  443 (613)
T KOG1233|consen  364 AIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDREEVDQHEERLYKIA  443 (613)
T ss_pred             HHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHHHHHHHHHHHHHHH
Confidence            567999999999999999999999998 6999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEE
Q psy3514          82 KRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVK  155 (159)
Q Consensus        82 ~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~  155 (159)
                      .+++|+..|..+|+.+|.++|.++|+||+.+.+|+++|+|||++|||++..||++|+++++++|+++|+...++
T Consensus       444 ekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~  517 (613)
T KOG1233|consen  444 EKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVL  517 (613)
T ss_pred             HHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999876554

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=99.16  E-value=2.2e-11  Score=96.62  Aligned_cols=123  Identities=24%  Similarity=0.260  Sum_probs=95.6

Q ss_pred             ccCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChH-HhHhHHH-HHHHH
Q psy3514           3 TVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE-DVKNNED-KIYSI   80 (159)
Q Consensus         3 aq~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~-~V~~~~~-~~~~I   80 (159)
                      .++++.|+.++|+|+.+++......+.                    .......|++++.|+|+.+ .++.+.+ .+.++
T Consensus        26 ~~~g~~p~a~el~d~~~~~~~~~~~~~--------------------~~~~~~~~~llv~~~g~~~~~~~~~~~~~i~~~   85 (248)
T PF02913_consen   26 MQSGIIPSAIELLDSAALKLALEHWGE--------------------PLPPEGGAVLLVEFEGSDEEAVEEQLEAEIEEI   85 (248)
T ss_dssp             CHHCSSCCECCCCHHHHHHHHHHSEEE--------------------TSSTTTSEEEEEECCCHHHCCHHHHHHHHHHHH
T ss_pred             HHcCCCceEEeeeCHHHHHHHHhhcCC--------------------CccCCcccEEEEEECCCcHHHHHHHHHHHHHHH
Confidence            356899999999999999766543221                    1223345899999999994 5666666 78888


Q ss_pred             HHHcCCCc-----CCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHH
Q psy3514          81 AKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC  145 (159)
Q Consensus        81 ~~~~GG~~-----~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~  145 (159)
                      ++++|+..     -.+...+.|..-++..||+++...+.|...+++|+++||++++++++.+++.+.+..
T Consensus        86 ~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~  155 (248)
T PF02913_consen   86 CKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREYG  155 (248)
T ss_dssp             HCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhcc
Confidence            88887764     112335778877777789999999999999999999999999999999988777764

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=98.71  E-value=5.3e-08  Score=85.33  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             ccCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHH
Q psy3514           3 TVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAK   82 (159)
Q Consensus         3 aq~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~   82 (159)
                      .|+++.|+.++++|+.+......                  +.  ..+...+..+++++.|+|+.++++.+.+++.++++
T Consensus       198 ~~~~~~p~a~el~d~~~~~~~~~------------------~~--~~~~p~~~~~~l~v~~~g~~~~~~~~~~~~~~~~~  257 (413)
T TIGR00387       198 IAAGIIPAGMEFLDNLSIKAVED------------------IS--GIGLPKDAGAILLVEIDGVHEAVERDEEKIEQICR  257 (413)
T ss_pred             HhcCCCcEEEEccCHHHHHHHHH------------------hc--CCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence            35789999999999988753110                  00  01222234588999999999999999999999999


Q ss_pred             HcCCCcC----C-ccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHH
Q psy3514          83 RYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE  144 (159)
Q Consensus        83 ~~GG~~~----G-~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~  144 (159)
                      ++|+...    + +...+.|...++..|++++.. ...+   +.|+++||++++++++.+++.+.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~~~~~~~~~~~~  320 (413)
T TIGR00387       258 KNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEALRGIADIARKY  320 (413)
T ss_pred             hCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHHHHHHHHHHHHc
Confidence            9988533    1 235567888777789988743 2222   3579999999999999997766543

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=98.42  E-value=1.7e-06  Score=78.02  Aligned_cols=114  Identities=11%  Similarity=0.181  Sum_probs=79.4

Q ss_pred             cCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKR   83 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~   83 (159)
                      ++++.|+.++++|+.......                  .++.  .+...+..+++++.|+|+++.++.+.+++.+++++
T Consensus       256 ~~~~~p~~~el~d~~~~~~~~------------------~~~~--~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~~  315 (499)
T PRK11230        256 AAGIIPGGLEMMDNLSIRAAE------------------DFIH--AGYPVDAEAILLCELDGVESDVQEDCERVNDILLK  315 (499)
T ss_pred             hcCCCcEEEEeeCHHHHHHHH------------------HhcC--CCCCCCcceEEEEEecCCchHHHHHHHHHHHHHHh
Confidence            578899999999998764210                  0110  11111234788999999999999999999999999


Q ss_pred             cCCCcCC-----ccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHH
Q psy3514          84 YGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL  141 (159)
Q Consensus        84 ~GG~~~G-----~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al  141 (159)
                      +|+..+.     +...+.|..-+...|+++..  ..+++.  .+++|||++++++++.+++..
T Consensus       316 ~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~~~~~~~~~  374 (499)
T PRK11230        316 AGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGVLEGIARLS  374 (499)
T ss_pred             cCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHHHHHHHHHH
Confidence            9975332     12335676633445887763  334444  499999999999999997644

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=98.29  E-value=7e-06  Score=75.02  Aligned_cols=114  Identities=18%  Similarity=0.088  Sum_probs=77.4

Q ss_pred             cCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKR   83 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~   83 (159)
                      ++++.|+.++++|+.+...-..                  +..  .++.  ..|++++.|+|++++++.+.+.+.+|+++
T Consensus       333 ~~g~~psa~ElmD~~~~~~~~~------------------~~~--~~~p--~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~  390 (555)
T PLN02805        333 LSGIQVSRVELLDEVQIRAINM------------------ANG--KNLP--EAPTLMFEFIGTEAYAREQTLIVQKIASK  390 (555)
T ss_pred             hCCCCcEEEEEECHHHHHHHHH------------------hcC--CCCC--cceEEEEEEecCcHHHHHHHHHHHHHHHh
Confidence            5689999999999988753210                  000  0111  23899999999999999999999999999


Q ss_pred             cCCC--cCCccc---hhhhhhhhhhh-hhhhhhhhccccceeeeecccccCChHHHHHHHHHHHH
Q psy3514          84 YGGI--PAGESN---GRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT  142 (159)
Q Consensus        84 ~GG~--~~G~~~---g~~W~~~rF~~-pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~  142 (159)
                      +|+.  .+.+.+   .+.|. .|-.. +.+..  ...+....+.+++||||+++++++.+++.+.
T Consensus       391 ~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~  452 (555)
T PLN02805        391 HNGSDFVFAEEPEAKKELWK-IRKEALWACFA--MEPKYEAMITDVCVPLSHLAELISRSKKELD  452 (555)
T ss_pred             CCCceEEEeCCHHHHHHHHH-HHHHHHHHHhh--cCCCCceeEEEEEEEHHHHHHHHHHHHHHHH
Confidence            9985  222332   44566 34333 22211  1224445577999999999999999976654

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.37  E-value=1  Score=36.48  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             EEEEEeCChHHhHhHHHHHHHHHHHcCCCcCCccchh-----hhhhhhhhh--hhhhhhhhcccccee----eeeccccc
Q psy3514          59 ATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR-----RGYMLTYII--AYIRDFACDYYFIGD----SFETSVPW  127 (159)
Q Consensus        59 ~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~-----~W~~~rF~~--pYlRd~l~d~G~~~D----T~ETAv~W  127 (159)
                      +.+-..|.+++++.....+.++.+..-+..-+...|-     --...+=++  +-|+|.|--+|+=++    -++|++||
T Consensus        39 vkV~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~  118 (204)
T COG3286          39 VKVNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPW  118 (204)
T ss_pred             EEEEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCH
Confidence            4555778899999999999998887776544433331     111222223  278999999998765    58999999


Q ss_pred             CChHHHHHHHHHHHHHH
Q psy3514         128 DKTVLLCINVKKRLTRE  144 (159)
Q Consensus       128 s~~~~l~~~V~~al~~~  144 (159)
                      |-+..+.+++.+..+.+
T Consensus       119 ~ev~E~vreLse~~~E~  135 (204)
T COG3286         119 SEVVELVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		1e-41
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		1e-41
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		4e-41
2uuu_A	584	Alkyldihydroxyacetonephosphate Synthase In P212121		3e-07

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  163 bits (412), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
           +RC P+SI L+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LF
Sbjct: 411 QRCAPASIHLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64  EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
           EGD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
           S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552

>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 9   PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 68
           P+ IR+ D  + +    ++P  G +   T  + K Y+  I  F    +C + + FEG  +
Sbjct: 345 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 404
Query: 69  DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 128
            V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  ET+V + 
Sbjct: 405 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 464
Query: 129 KTVLLCINVKKRLTRECTGRWLPVLV 154
               L  + K+   +    + +P  +
Sbjct: 465 NLQTLWKDAKQTFVKHFKDQGIPAWI 490

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	4e-34

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score =  124 bits (313), Expect = 4e-34
 Identities = 33/150 (22%), Positives = 62/150 (41%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
               P+ IR+ D  + +    ++P  G +   T  + K Y+  I  F    +C + + FE
Sbjct: 341 SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFE 400

Query: 65  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
           G  + V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  ET+
Sbjct: 401 GPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETT 460

Query: 125 VPWDKTVLLCINVKKRLTRECTGRWLPVLV 154
           V +     L  + K+   +    + +P  +
Sbjct: 461 VSYANLQTLWKDAKQTFVKHFKDQGIPAWI 490

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.75
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.72
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	98.23
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	98.0
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	97.8
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	96.42
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	96.19

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.75  E-value=5.1e-18  Score=152.99  Aligned_cols=151  Identities=22%  Similarity=0.359  Sum_probs=128.4

Q ss_pred             cCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKR   83 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~   83 (159)
                      ++++.|+.++|+|+.++.+.++..+.++....+.+.+.+.|+.+++++.....|++++.|+|++++|+.+.+++.++|++
T Consensus       340 ~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~v~~~~~~~~~~~~~  419 (584)
T 2uuu_A          340 SSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSK  419 (584)
T ss_dssp             HHTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCCccEEEEEEEecChHHHHHHHHHHHHHHHH
Confidence            46899999999999999887776654433333334444556665667764456999999999999999999999999999


Q ss_pred             cCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEE
Q psy3514          84 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLV  154 (159)
Q Consensus        84 ~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v  154 (159)
                      +||...++...+.|+..|+..||+|+.++++|.+.+++||+||||+++++++.+++.+.+.+.++|.++++
T Consensus       420 ~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l~~~~~~~g~~~~~  490 (584)
T 2uuu_A          420 NAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWI  490 (584)
T ss_dssp             TTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHHHhHHHhcCCeeEE
Confidence            99988888889999999999999999999999999999999999999999999999999999998888544

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.72  E-value=2.2e-17  Score=150.28  Aligned_cols=149  Identities=50%  Similarity=0.979  Sum_probs=124.7

Q ss_pred             ccCCCCCCeeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHH
Q psy3514           3 TVRRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA   81 (159)
Q Consensus         3 aq~~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~   81 (159)
                      +|+++.|+++||+|+.++++..++.+. ......+.++....++..++|++++..|++++.|||+.+.+..+.+.+.+++
T Consensus       409 ~~~~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~  488 (658)
T 4bby_A          409 AKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIA  488 (658)
T ss_dssp             HHTTCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             HHcCCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            367999999999999999998887765 3444555566667778888999988889999999999999999999999999


Q ss_pred             HHcCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCC
Q psy3514          82 KRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLP  151 (159)
Q Consensus        82 ~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~  151 (159)
                      +++||+..++..+++|+..||..||+|+..++.+...+++||++||++++++++++++.+.+.+.+.+..
T Consensus       489 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~~~~~~~g~~  558 (658)
T 4bby_A          489 AKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQ  558 (658)
T ss_dssp             HTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999887764

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=98.23  E-value=1.3e-07  Score=85.08  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=68.2

Q ss_pred             hcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHcCCCcC--Cccchhhhhhhhhhhh----hhhhhhhc-cccceee
Q psy3514          48 ILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDS  120 (159)
Q Consensus        48 ~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~--G~~~g~~W~~~rF~~p----YlRd~l~d-~G~~~DT  120 (159)
                      +|||+....+.+++-|+|+..+.  ..+.+.++++.++|...  .+..+++|...||..+    ++|+...+ .| .+.+
T Consensus       381 ~~~~~~~~~~~llve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~  457 (571)
T 1f0x_A          381 MKNWRDKYEHHLLLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILA  457 (571)
T ss_dssp             HHHHHHHCSEEEEEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEE
T ss_pred             hhcccccCceEEEEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceE
Confidence            34444323488999999987643  25666778888766433  4567888888999996    88887765 33 3689


Q ss_pred             eecccccCChHHHHHHHHHHHHHH
Q psy3514         121 FETSVPWDKTVLLCINVKKRLTRE  144 (159)
Q Consensus       121 ~ETAv~Ws~~~~l~~~V~~al~~~  144 (159)
                      +|||+||++++.+ +.+++.+.+.
T Consensus       458 ~Dvavp~~~l~~~-~~~~~~l~~~  480 (571)
T 1f0x_A          458 LDIALRRNDTEWY-EHLPPEIDSQ  480 (571)
T ss_dssp             EEEECCTTCSCCS-CCCCHHHHTT
T ss_pred             EEEEecHHHhHHH-HHHHHHHHhh
Confidence            9999999999999 8888777654

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=98.00  E-value=3.3e-05  Score=68.92  Aligned_cols=130  Identities=7%  Similarity=-0.145  Sum_probs=82.7

Q ss_pred             cCCCCCCeeEeechhhhhhc-ccC----CC-CCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAG-QFF----RP-DPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKI   77 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~-lal----~~-~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~   77 (159)
                      ++++.|+.+.++|+.. ... +..    .+ ..+......    ..++.   +++. ..|++++.|+|+++.|+.+.+++
T Consensus       301 ~~~~~p~~~el~d~~~-~~~~l~~~~~~~~~~~~~p~~~~----~~l~~---~~~~-~~~~l~~e~~g~~~~v~~~~~~i  371 (560)
T 1e8g_A          301 LGMALQNVPTIRHILL-DAAVLGDKRSYSSRTEPLSDEEL----DKIAK---QLNL-GRWNFYGALYGPEPIRRVLWETI  371 (560)
T ss_dssp             HTTSSCSCCEEEEHHH-HHHHHCCGGGTCCCSSCCCHHHH----HHHHH---HHTC-CSEEEEEEEESCHHHHHHHHHHH
T ss_pred             HcCCCcceeEEechHH-HhhhhhhhhhhccCCCCCCHHHH----HHHHh---hcCC-CceEEEEEEeCCHHHHHHHHHHH
Confidence            4689999999999985 221 110    01 000100000    11111   1222 23889999999999999999999


Q ss_pred             HHHHHHcCCCcC--Cccc--hhhhhhhhhhh----hhhhhh---hhccccceeeeeccccc--CChHHHHHHHHHHHHH
Q psy3514          78 YSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW--DKTVLLCINVKKRLTR  143 (159)
Q Consensus        78 ~~I~~~~GG~~~--G~~~--g~~W~~~rF~~----pYlRd~---l~d~G~~~DT~ETAv~W--s~~~~l~~~V~~al~~  143 (159)
                      .++++++|+..+  .+.+  .+.|.. |+..    |+++..   .|..|=...++++++||  ++++++++.+++.+.+
T Consensus       372 ~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~~~~~~~  449 (560)
T 1e8g_A          372 KDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQE  449 (560)
T ss_dssp             HHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCCHHHHHHHHHHHHHHHHH
Confidence            999999998543  3222  344554 7654    877754   23332235668999999  9999999999765433

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=97.80  E-value=6e-05  Score=66.18  Aligned_cols=116  Identities=9%  Similarity=-0.040  Sum_probs=79.0

Q ss_pred             CCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHc
Q psy3514           5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY   84 (159)
Q Consensus         5 ~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~~   84 (159)
                      .++.|+.+.++|+...+.-.......                  ..++.+..+++++.|+|+.++++.+.+++.+++.++
T Consensus       255 ~g~~p~a~El~d~~~~~~~~~~~~~~------------------~~~~~~~~~~llve~~g~~~~~~~~~~~~~~~~~~~  316 (476)
T 3pm9_A          255 AAGNLTSFELIAETPLDFSVRHANNR------------------DPLEARYPWYVLIELSSPRDDARAALESILERGFED  316 (476)
T ss_dssp             HGGGEEEEEEEEHHHHHHHHHHTTCC------------------CCSSSCCSEEEEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             cCCCceEEEecCHHHHHHHHhccCCC------------------CCCCccCCeEEEEEEccCcHHHHHHHHHHHHHHHhc
Confidence            47889999999987765332110000                  012222248999999999988988999999999999


Q ss_pred             CCCcC---Cc---cchhhhhhhhhhh-hhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHH
Q psy3514          85 GGIPA---GE---SNGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE  144 (159)
Q Consensus        85 GG~~~---G~---~~g~~W~~~rF~~-pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~  144 (159)
                      |++.-   ..   ...+-|. .|-.. +.++    ..|. ..+.+++||||+++++++.+++.+.+.
T Consensus       317 g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~~l~~~~~~~~~~~~~~  377 (476)
T 3pm9_A          317 GIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVAAVPQFIEQANAAVVAL  377 (476)
T ss_dssp             TCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHHHHHHHHHHHHHHHHHh
Confidence            87521   11   2234564 45444 3333    2343 689999999999999999998887776

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=96.42  E-value=0.019  Score=50.38  Aligned_cols=128  Identities=9%  Similarity=-0.076  Sum_probs=70.6

Q ss_pred             cCCCCCCeeEeechhhhhhcccCC-----CC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAGQFFR-----PD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKI   77 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~lal~-----~~-~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~   77 (159)
                      ++++.|+.++++|+..........     .. ...-......    ++   ++... ..+++++.|+|++++++.+.+.+
T Consensus       269 ~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~-~~~~l~~~~~g~~~~v~~~~~~i  340 (520)
T 1wvf_A          269 MSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQ----MQ---KDTGM-GAWNLYAALYGTQEQVDVNWKIV  340 (520)
T ss_dssp             HTTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHH----HH---HHHCC-CSEEEEEEEEESHHHHHHHHHHH
T ss_pred             HcCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHH----HH---HhcCC-CceEEEEEEeCCHHHHHHHHHHH
Confidence            468999999999998443221111     00 0000000000    01   11111 23788888999999999999999


Q ss_pred             HHHHHHcCCCcCCccchhhhhhhhhhhhhhhhhhh--------------c--cccceeeeecccccCChHHHHHHHHHHH
Q psy3514          78 YSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC--------------D--YYFIGDSFETSVPWDKTVLLCINVKKRL  141 (159)
Q Consensus        78 ~~I~~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~--------------d--~G~~~DT~ETAv~Ws~~~~l~~~V~~al  141 (159)
                      .++++++|+..+..   ..|.+ +-...++|..++              .  .+.+.++.-..++|++++++++.+++.+
T Consensus       341 ~~~~~~~~~~~~~~---~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~l~~~~~~~~~~~  416 (520)
T 1wvf_A          341 TDVFKKLGKGRIVT---QEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVL  416 (520)
T ss_dssp             HHHHHHHTCCEEEE---HHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEe---cccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCCHHHHHHHHHHHHHHH
Confidence            99999999864421   11111 112223332222              0  1223333444556699999998886655


Q ss_pred             HH
Q psy3514         142 TR  143 (159)
Q Consensus       142 ~~  143 (159)
                      .+
T Consensus       417 ~~  418 (520)
T 1wvf_A          417 HK  418 (520)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=96.19  E-value=0.0013  Score=58.12  Aligned_cols=75  Identities=5%  Similarity=-0.107  Sum_probs=57.7

Q ss_pred             ceEEEEEE-----eC-ChHHhHhHHHHHHHHHHHcCCCcCCcc----------chhhhhhhhhhhhhhhhhhhcccccee
Q psy3514          56 MCAATVLF-----EG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGD  119 (159)
Q Consensus        56 ~cl~~~gf-----EG-~~~~V~~~~~~~~~I~~~~GG~~~G~~----------~g~~W~~~rF~~pYlRd~l~d~G~~~D  119 (159)
                      .|++++.|     +| ++++|+.+.+.+.++++.+||....+.          ....|...++..|.+..     .    
T Consensus       311 ~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----  381 (524)
T 2exr_A          311 SVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----  381 (524)
T ss_dssp             SEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----
T ss_pred             cEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----
Confidence            47888888     89 788999999999999999999865532          22347776665554442     1    


Q ss_pred             eeecccccCChHHHHHHHHH
Q psy3514         120 SFETSVPWDKTVLLCINVKK  139 (159)
Q Consensus       120 T~ETAv~Ws~~~~l~~~V~~  139 (159)
                      ++++++|||+++++++.|++
T Consensus       382 ~~Dv~VP~s~l~~~~~~v~~  401 (524)
T 2exr_A          382 WLNLFVSKRDIGDFNRTVFK  401 (524)
T ss_dssp             CEEEEEEHHHHHHHHHHCCC
T ss_pred             eeEEEECHHHHHHHHHHHHH
Confidence            35999999999999988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1wvfa1	279	d.58.32.1 (A:243-521) Flavoprotein subunit of p-cr	5e-10

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 279

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 54.3 bits (130), Expect = 5e-10
 Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 9/130 (6%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
               P+S+ +   +               E          + ++                
Sbjct: 29  SNTIPNSVVIASTLWEAGSAHLTRAQYTTE--PGHTPDSVIKQMQKDTGMGAWNLYAALY 86

Query: 65  GDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYYFI 117
           G  E V  N   +  + K+ G                +    L   +  +++F    +  
Sbjct: 87  GTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRG 146

Query: 118 GDSFETSVPW 127
           G       P 
Sbjct: 147 GGGSMWFAPV 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	98.84
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	98.03

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.84  E-value=9.6e-09  Score=81.52  Aligned_cols=141  Identities=13%  Similarity=0.028  Sum_probs=91.7

Q ss_pred             cCCCCCCeeEeechhhhhhcccCCCC-----CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAGQFFRPD-----PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIY   78 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~lal~~~-----~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~   78 (159)
                      ++|+.|+.++++|+..........+.     .+.+..   .....++. ..+  . ..|.+++.|+|++++|+.+.+++.
T Consensus        28 ~~gi~p~~~e~~d~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~l~~-~~~--~-~~w~l~~~l~G~~~~v~~~~~~i~  100 (279)
T d1wvfa1          28 MSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPD---SVIKQMQK-DTG--M-GAWNLYAALYGTQEQVDVNWKIVT  100 (279)
T ss_dssp             HTTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCH---HHHHHHHH-HHC--C-CSEEEEEEEEESHHHHHHHHHHHH
T ss_pred             HcCCCcceeEecCHHHHHHHHhccccccccCCCCCCH---HHHHHHHH-HhC--C-CceeEEEEeecCHHHHHHHHHHHH
Confidence            58999999999999988766554422     111111   11111222 112  1 348999999999999999999999


Q ss_pred             HHHHHcCCCcC---Cccch-hhhh---hhhhhhhhhhhhhhcc-----ccceeeeecccccCChHHHHHHHHHHHHHHHh
Q psy3514          79 SIAKRYGGIPA---GESNG-RRGY---MLTYIIAYIRDFACDY-----YFIGDSFETSVPWDKTVLLCINVKKRLTRECT  146 (159)
Q Consensus        79 ~I~~~~GG~~~---G~~~g-~~W~---~~rF~~pYlRd~l~d~-----G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~  146 (159)
                      +|++++||..+   ..... +.|.   +..+..|+++.+.+..     |.+..+-.++++||+++++++.+++.+.    
T Consensus       101 ~i~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~s~l~~~~~~~~~~~~----  176 (279)
T d1wvfa1         101 DVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLH----  176 (279)
T ss_dssp             HHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCHHHHHHHHHHHHHHHH----
Confidence            99999999754   11111 2232   2235557777765543     4555666788999999999988755544    


Q ss_pred             ccCCCcEEE
Q psy3514         147 GRWLPVLVK  155 (159)
Q Consensus       147 ~~g~~~~v~  155 (159)
                      ++|.+..++
T Consensus       177 ~~g~~~~~~  185 (279)
T d1wvfa1         177 KYGLDYVAE  185 (279)
T ss_dssp             HTTCCCCEE
T ss_pred             HhCCCeEEE
Confidence            456655443

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=98.03  E-value=1.2e-05  Score=63.14  Aligned_cols=139  Identities=7%  Similarity=-0.189  Sum_probs=86.0

Q ss_pred             cCCCCCCeeEeechhhhhhcccCCC-----CCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHH
Q psy3514           4 VRRCQPSSIRLVDNVQLKAGQFFRP-----DPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIY   78 (159)
Q Consensus         4 q~~l~Pa~~RLsD~~Et~~~lal~~-----~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~   78 (159)
                      ++++.|++++++|+...........     ....-...++.     +....|.   ..+.+.+.++|+++.|+.+.+.+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~---~~~~~~~~l~G~~~~v~~~~~~i~   99 (287)
T d1e8ga1          28 LGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDK-----IAKQLNL---GRWNFYGALYGPEPIRRVLWETIK   99 (287)
T ss_dssp             HTTSSCSCCEEEEHHHHHHHHCCGGGTCCCSSCCCHHHHHH-----HHHHHTC---CSEEEEEEEESCHHHHHHHHHHHH
T ss_pred             hccCCcceEEEecchHHHHHHHhHHHHhhcCCCCCHHHHHH-----HHHhcCc---chhheeeecccCHHHHHHHHHHHH
Confidence            4678999999999988654333321     11111122221     1112232   237889999999999999999999


Q ss_pred             HHHHHcCCCcCC-----ccchhhhhhhhhh------hhhhhhhhhccccceeeeecccccCC-hHHHHHHHHHHHHHHHh
Q psy3514          79 SIAKRYGGIPAG-----ESNGRRGYMLTYI------IAYIRDFACDYYFIGDSFETSVPWDK-TVLLCINVKKRLTRECT  146 (159)
Q Consensus        79 ~I~~~~GG~~~G-----~~~g~~W~~~rF~------~pYlRd~l~d~G~~~DT~ETAv~Ws~-~~~l~~~V~~al~~~~~  146 (159)
                      ++++++||..+-     .....-|...++.      .++..+...+.+...++.+++++|++ ++.+++.+    ++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~----~~~~~  175 (287)
T d1e8ga1         100 DAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVT----KKRCQ  175 (287)
T ss_dssp             HHHTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHH----HHHHH
T ss_pred             HHHHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccChHHHHHHHHHH----HHHHH
Confidence            999999996431     1222234333322      23445555667778888999999875 77777665    44444


Q ss_pred             ccCCCcEE
Q psy3514         147 GRWLPVLV  154 (159)
Q Consensus       147 ~~g~~~~v  154 (159)
                      ++|.+..+
T Consensus       176 ~~g~~~~~  183 (287)
T d1e8ga1         176 EAGLDFIG  183 (287)
T ss_dssp             HHTCCCCE
T ss_pred             HcCCCeEE
Confidence            54555443