Psyllid ID: psy3538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MYPFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHcccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mypfrnnvcNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSklyhpdknkgsEAAAKKFREITAAYEVLGEF
Flexible Loop (DISEMBL)
MYPFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF
Low Complexity Region (SEG)
MYPFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF
Disordered region (IsUnstruct)
***FRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLY****************************
Disordered Region (DISOPRED)
*******VCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNK**E*AAKKFREITAAYEVLGEF
Disordered Region (DISEMBL)
MYPFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF
Disordered Region (DISPRO)
MYPFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYPFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
B0S1F7	372	Chaperone protein DnaJ OS	yes	N/A	0.617	0.147	0.581	3e-11
Q73IV4	372	Chaperone protein DnaJ OS	yes	N/A	0.651	0.155	0.5	6e-11
A4XKA5	387	Chaperone protein DnaJ OS	yes	N/A	0.640	0.147	0.543	6e-11
P25303	377	DnaJ-related protein SCJ1	yes	N/A	0.617	0.145	0.527	7e-11
A5UF67	382	Chaperone protein DnaJ OS	yes	N/A	0.651	0.151	0.517	9e-11
B0BTI6	380	Chaperone protein DnaJ OS	yes	N/A	0.651	0.152	0.517	1e-10
A3N3J9	380	Chaperone protein DnaJ OS	yes	N/A	0.651	0.152	0.517	1e-10
P43735	382	Chaperone protein DnaJ OS	yes	N/A	0.651	0.151	0.517	1e-10
A7MWW1	381	Chaperone protein DnaJ OS	yes	N/A	0.629	0.146	0.464	2e-10
B9MJZ0	388	Chaperone protein DnaJ OS	yes	N/A	0.640	0.146	0.526	2e-10

>sp|B0S1F7|DNAJ_FINM2 Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 36/55 (65%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          N Y  L+V   ATQ EIK SY RL+K YHPD N G   A  KF+EI  AYEVLG+
Sbjct: 3  NLYEILEVNENATQEEIKKSYRRLAKKYHPDINSGDSEAENKFKEINGAYEVLGD 57

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Finegoldia magna (strain ATCC 29328) (taxid: 334413)

>sp|Q73IV4|DNAJ_WOLPM Chaperone protein DnaJ OS=Wolbachia pipientis wMel GN=dnaJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +K +YY  L+VG  A+ +EIK +Y +L+  YHPD+N G++ A +KF+E+TAAYEVL +
Sbjct: 2  SKKDYYDLLEVGRNASIDEIKKAYKKLALRYHPDRNPGNQEAEEKFKEVTAAYEVLSD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Wolbachia pipientis wMel (taxid: 163164)

>sp|A4XKA5|DNAJ_CALS8 Chaperone protein DnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          K +YY  L V   ATQ EIK +Y RL+K YHPD N G++ A +KF+EI  AYEVL +
Sbjct: 4  KKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSD 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|P25303|SCJ1_YEAST DnaJ-related protein SCJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCJ1 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +YY+ L++  +AT+ EIK++Y +LSK YHPDKN GSE A +KF E+  AY+VL +
Sbjct: 23 DYYAILEIDKDATEKEIKSAYRQLSKKYHPDKNAGSEEAHQKFIEVGEAYDVLSD 77

Regulates protein folding in the endoplasmic reticulum lumen. Probably acts as a J-protein for the Hsp70-type chaperone KAR2 by stimulating its ATP-dependent reaction cycle and initiating folding reactions. Also involved in the endoplasmic reticulum-associated degradation (ERAD) process. Cooperates with KAR2 and another J-protein JEM1 to facilitate the export of ERAD substrates to the cytoplasm by maintaining them in a translocation-competent state and preventing their aggregation in the endoplasmic reticulum lumen.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A5UF67|DNAJ_HAEIG Chaperone protein DnaJ OS=Haemophilus influenzae (strain PittGG) GN=dnaJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          AK +YY  L +   A++N+IK +Y RL+  +HPDKN+GS+ A +KF+EI  AYEVLG+
Sbjct: 2  AKKDYYEVLGLKKGASENDIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Haemophilus influenzae (strain PittGG) (taxid: 374931)

>sp|B0BTI6|DNAJ_ACTPJ Chaperone protein DnaJ OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dnaJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          AK +YY  L +   A++N+IK +Y RL+  +HPDKN+GS+ A +KF+EI  AYEVLG+
Sbjct: 2  AKKDYYEVLGLQKGASENDIKRAYKRLASKHHPDKNQGSKDAEEKFKEINEAYEVLGD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Actinobacillus pleuropneumoniae serotype 3 (strain JL03) (taxid: 434271)

>sp|A3N3J9|DNAJ_ACTP2 Chaperone protein DnaJ OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          AK +YY  L +   A++N+IK +Y RL+  +HPDKN+GS+ A +KF+EI  AYEVLG+
Sbjct: 2  AKKDYYEVLGLQKGASENDIKRAYKRLASKHHPDKNQGSKDAEEKFKEINEAYEVLGD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Actinobacillus pleuropneumoniae serotype 5b (strain L20) (taxid: 416269)

>sp|P43735|DNAJ_HAEIN Chaperone protein DnaJ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaJ PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          AK +YY  L +   A+++EIK +Y RL+  +HPDKN+GS+ A +KF+EI  AYEVLG+
Sbjct: 2  AKKDYYEVLGLQKGASEDEIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|A7MWW1|DNAJ_VIBHB Chaperone protein DnaJ OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dnaJ PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 42/56 (75%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +K ++Y  L VG +A++ +IK +Y RL+  +HPD+N+G E+AA KF+E+  AYE+L
Sbjct: 2  SKRDFYEVLGVGRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEIL 57

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

>sp|B9MJZ0|DNAJ_CALBD Chaperone protein DnaJ OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          K +YY  L V   AT+ EIK +Y RL+K YHPD N G++ A +KF+EI  AYEVL +
Sbjct: 4  KKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSD 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
195396101	231	GJ10092 [Drosophila virilis] gi|19414338	0.685	0.264	0.655	1e-16
198454415	230	GA10720 [Drosophila pseudoobscura pseudo	0.685	0.265	0.622	3e-15
195153188	230	GL22336 [Drosophila persimilis] gi|19411	0.685	0.265	0.622	3e-15
195451278	226	GK13822 [Drosophila willistoni] gi|19416	0.876	0.345	0.525	3e-15
194743422	228	GF16867 [Drosophila ananassae] gi|190627	0.842	0.328	0.531	4e-15
194899418	231	GG24719 [Drosophila erecta] gi|190650960	0.651	0.251	0.637	5e-15
118780598	225	AGAP003729-PA [Anopheles gambiae str. PE	0.629	0.248	0.696	1e-14
195111865	233	GI22491 [Drosophila mojavensis] gi|19391	0.786	0.300	0.555	1e-14
195055412	231	GH15145 [Drosophila grimshawi] gi|193892	0.696	0.268	0.596	1e-14
195498583	231	GE25746 [Drosophila yakuba] gi|194182686	0.651	0.251	0.603	2e-14

>gi|195396101|ref|XP_002056671.1| GJ10092 [Drosophila virilis] gi|194143380|gb|EDW59783.1| GJ10092 [Drosophila virilis]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 52/61 (85%)

Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +Q ++N+Y  L +G  +TQNEIKA+YY+LS +YHPD+NKGSE+AAKKFREI+ AYEVLG 
Sbjct: 21 AQWQLNHYDALGIGKRSTQNEIKAAYYKLSMIYHPDRNKGSESAAKKFREISQAYEVLGN 80

Query: 89 F 89
          F
Sbjct: 81 F 81

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454415|ref|XP_001359582.2| GA10720 [Drosophila pseudoobscura pseudoobscura] gi|198132783|gb|EAL28732.3| GA10720 [Drosophila pseudoobscura pseudoobscura]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 50/61 (81%)

Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          S  ++NYY  L +G + TQNEIKA+YY+LS LYHPD+N+GS++AAKKFR+I  AYEVLG 
Sbjct: 21 SSLQLNYYDALGIGKKCTQNEIKAAYYKLSMLYHPDRNQGSDSAAKKFRDINQAYEVLGN 80

Query: 89 F 89
          +
Sbjct: 81 Y 81

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153188|ref|XP_002017511.1| GL22336 [Drosophila persimilis] gi|194112568|gb|EDW34611.1| GL22336 [Drosophila persimilis]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 50/61 (81%)

Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          S  ++NYY  L +G + TQNEIKA+YY+LS LYHPD+N+GS++AAKKFR+I  AYEVLG 
Sbjct: 21 SSLQLNYYDALGIGKKCTQNEIKAAYYKLSMLYHPDRNQGSDSAAKKFRDINQAYEVLGN 80

Query: 89 F 89
          +
Sbjct: 81 Y 81

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451278|ref|XP_002072844.1| GK13822 [Drosophila willistoni] gi|194168929|gb|EDW83830.1| GK13822 [Drosophila willistoni]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 10 NLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS 69
           L W  +      TS     Q  +NYY  L +   +TQNEIKA+YY+LS +YHPD+N+GS
Sbjct: 6  QLMWRYLVPRHLHTSCPLGQQ--INYYDALGIAKRSTQNEIKAAYYKLSMVYHPDRNQGS 63

Query: 70 EAAAKKFREITAAYEVLGEF 89
          E+AAKKFREI  AYEVLG +
Sbjct: 64 ESAAKKFREINQAYEVLGNY 83

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743422|ref|XP_001954199.1| GF16867 [Drosophila ananassae] gi|190627236|gb|EDV42760.1| GF16867 [Drosophila ananassae]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 4/79 (5%)

Query: 11 LTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE 70
          L W  +      TS +     ++++Y  L +G  +TQNEIKA+YY+LS LYHPDKN+GSE
Sbjct: 8  LFWRAIIARNLHTSFI----QQMSHYDALGIGKRSTQNEIKAAYYKLSMLYHPDKNQGSE 63

Query: 71 AAAKKFREITAAYEVLGEF 89
          +AAKKFREI  AYEVLG +
Sbjct: 64 SAAKKFREINQAYEVLGNY 82

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194899418|ref|XP_001979257.1| GG24719 [Drosophila erecta] gi|190650960|gb|EDV48215.1| GG24719 [Drosophila erecta]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 49/58 (84%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89
          ++++Y  L +G + TQNEIKA+YY+LS LYHPDKN+GSE+AAKKFREI  AYE+LG +
Sbjct: 25 QMSHYDALGIGRQCTQNEIKAAYYKLSMLYHPDKNQGSESAAKKFREINQAYEILGNY 82

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118780598|ref|XP_310260.5| AGAP003729-PA [Anopheles gambiae str. PEST] gi|116130925|gb|EAA05983.3| AGAP003729-PA [Anopheles gambiae str. PEST]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 47/56 (83%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89
          ++Y  L V   ATQN+IK +YY+LSKLYHPDKNKGSE AA+KFR+ITAAYEVLG +
Sbjct: 37 SHYDSLGVTPSATQNDIKQAYYKLSKLYHPDKNKGSEVAAEKFRDITAAYEVLGNY 92

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111865|ref|XP_002000497.1| GI22491 [Drosophila mojavensis] gi|193917091|gb|EDW15958.1| GI22491 [Drosophila mojavensis]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 20 RFSTSALYSS--QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFR 77
          RF    L+++  Q ++++Y  L +   +TQ EIKA+YY+LS +YHPD+NKGSE+AAKKFR
Sbjct: 10 RFLARCLHTTNGQWQISHYEALGISKSSTQTEIKAAYYKLSMVYHPDRNKGSESAAKKFR 69

Query: 78 EITAAYEVLGEF 89
          EIT AYEVLG +
Sbjct: 70 EITQAYEVLGNY 81

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055412|ref|XP_001994613.1| GH15145 [Drosophila grimshawi] gi|193892376|gb|EDV91242.1| GH15145 [Drosophila grimshawi]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 51/62 (82%)

Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          ++Q ++++Y  L +    TQNEIKA+YY+LS +YHPD+NKGSE+AAKKFREI+ AYEVLG
Sbjct: 20 TAQWQLSHYDALGIDKRCTQNEIKAAYYKLSMIYHPDRNKGSESAAKKFREISQAYEVLG 79

Query: 88 EF 89
           +
Sbjct: 80 NY 81

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195498583|ref|XP_002096585.1| GE25746 [Drosophila yakuba] gi|194182686|gb|EDW96297.1| GE25746 [Drosophila yakuba]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 49/58 (84%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89
          ++++Y  L +G + TQNEIKA+YY+LS LYHPD+N+GS++AAKKFREI  AYE+LG +
Sbjct: 25 QISHYEALGIGRQCTQNEIKAAYYKLSMLYHPDRNQGSDSAAKKFREINQAYEILGNY 82

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
FB|FBgn0037544	231	CG11035 [Drosophila melanogast	0.719	0.277	0.6	2.3e-16
SGD|S000004827	377	SCJ1 "One of several homologs	0.617	0.145	0.527	6.5e-11
UNIPROTKB|Q3SZ23	226	DNAJC30 "Uncharacterized prote	0.584	0.230	0.596	1.5e-10
UNIPROTKB|E2RET0	226	DNAJC30 "Uncharacterized prote	0.584	0.230	0.596	1.5e-10
RGD|1595783	219	Dnajc30 "DnaJ (Hsp40) homolog,	0.842	0.342	0.461	2e-10
UNIPROTKB|Q96LL9	226	DNAJC30 "DnaJ homolog subfamil	0.662	0.261	0.525	2.5e-10
MGI|MGI:1913364	219	Dnajc30 "DnaJ (Hsp40) homolog,	0.584	0.237	0.576	3.2e-10
UNIPROTKB|F1NNE0	393	DNAJA3 "Uncharacterized protei	0.775	0.175	0.450	3.2e-10
UNIPROTKB|J9P8P4	453	DNAJA3 "Uncharacterized protei	0.820	0.161	0.447	3.3e-10
TAIR|locus:2081725	346	ATERDJ3B [Arabidopsis thaliana	0.876	0.225	0.410	5.2e-10

FB|FBgn0037544 CG11035 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query:    26 LYSSQA-KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYE 84
             LY SQ  ++++Y  L +  + TQNEIKA+YY+LS LYHPD+N+GSE AAKKFREI  AYE
Sbjct:    18 LYLSQRHQMSHYDALGIRRQCTQNEIKAAYYKLSMLYHPDRNQGSENAAKKFREINQAYE 77

Query:    85 VLGEF 89
             +LG +
Sbjct:    78 ILGNY 82

GO:0051087 "chaperone binding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

SGD|S000004827 SCJ1 "One of several homologs of bacterial chaperone DnaJ" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 158 (60.7 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query:    34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
             +YY+ L++  +AT+ EIK++Y +LSK YHPDKN GSE A +KF E+  AY+VL +
Sbjct:    23 DYYAILEIDKDATEKEIKSAYRQLSKKYHPDKNAGSEEAHQKFIEVGEAYDVLSD 77

GO:0034975 "protein folding in endoplasmic reticulum" evidence=IMP

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IMP

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISS;IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q3SZ23 DNAJC30 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/52 (59%), Positives = 37/52 (71%)

Query:    36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
             Y  L V S ATQ +IKA+YYR S LYHPD+N GS  AA++F  I+ AY VLG
Sbjct:    51 YDLLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLG 102

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RET0 DNAJC30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/52 (59%), Positives = 37/52 (71%)

Query:    36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
             Y  L V S ATQ +IKA+YYR S LYHPD+N GS  AA++F  I+ AY VLG
Sbjct:    51 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLG 102

GO:0005739 "mitochondrion" evidence=IEA

RGD|1595783 Dnajc30 "DnaJ (Hsp40) homolog, subfamily C, member 30" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 36/78 (46%), Positives = 47/78 (60%)

Query:    13 WAVVKYHRFSTSALYS---SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS 69
             W V    + S + L S   + ++   Y  L V S ATQ +IKA+YYR S LYHPD+N GS
Sbjct:    18 WQVQGLPQSSATGLCSRVRTYSRNALYDLLGVPSTATQAQIKAAYYRQSFLYHPDRNPGS 77

Query:    70 EAAAKKFREITAAYEVLG 87
               AA++F  I+ AY VLG
Sbjct:    78 TEAAERFTRISEAYLVLG 95

GO:0005739 "mitochondrion" evidence=ISO

UNIPROTKB|Q96LL9 DNAJC30 "DnaJ homolog subfamily C member 30" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
             S ++   Y  L V S ATQ +IKA+YYR   LYHPD+N GS  AA++F  I+ AY VLG
Sbjct:    44 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 102

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1913364 Dnajc30 "DnaJ (Hsp40) homolog, subfamily C, member 30" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query:    36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
             Y  L V S ATQ +IKA+YYR S LYHPD+N GS  AA++F  ++ AY VLG
Sbjct:    44 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNPGSAEAAERFTRVSEAYLVLG 95

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NNE0 DNAJA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query:    20 RFSTSALYSS--QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFR 77
             R   ++ +SS  +AK +YY  L V   A+Q EIK +YY+L+K YHPD NK    A +KF 
Sbjct:    15 RVPAASFHSSAARAKEDYYEVLGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFA 74

Query:    78 EITAAYEVLGE 88
             ++  AYEVL +
Sbjct:    75 QLAEAYEVLSD 85

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

UNIPROTKB|J9P8P4 DNAJA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 34/76 (44%), Positives = 48/76 (63%)

Query:    16 VKYHRF-STSALYSSQ--AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAA 72
             VK + F  T++ ++S   AK +YY  L V   A+Q EIK +YY+L+K YHPD NK    A
Sbjct:    72 VKSYPFVCTASFHTSSPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKA 131

Query:    73 AKKFREITAAYEVLGE 88
              +KF ++  AYEVL +
Sbjct:   132 KEKFSQLAEAYEVLSD 147

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

TAIR|locus:2081725 ATERDJ3B [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 32/78 (41%), Positives = 46/78 (58%)

Query:    11 LTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE 70
             + W+ +    F+ S      A  +YY  LQV   A+  +IK +Y +L+  YHPDKN+G+E
Sbjct:     3 IRWSELCIVLFALSYAICVLAGKSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNE 62

Query:    71 AAAKKFREITAAYEVLGE 88
              A +KF EI  AYEVL +
Sbjct:    63 EATRKFAEINNAYEVLSD 80

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IMP

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7M0B1	DNAJ_ECO8A	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
A4XKA5	DNAJ_CALS8	No assigned EC number	0.5438	0.6404	0.1472	yes	N/A
B9MJZ0	DNAJ_CALBD	No assigned EC number	0.5263	0.6404	0.1469	yes	N/A
Q8FLC5	DNAJ_ECOL6	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
B0BTI6	DNAJ_ACTPJ	No assigned EC number	0.5172	0.6516	0.1526	yes	N/A
B0S1F7	DNAJ_FINM2	No assigned EC number	0.5818	0.6179	0.1478	yes	N/A
B7UI60	DNAJ_ECO27	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
Q5KWZ8	DNAJ_GEOKA	No assigned EC number	0.5517	0.6404	0.1492	yes	N/A
Q1RGI7	DNAJ_ECOUT	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
Q32KA4	DNAJ_SHIDS	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
C5B7L8	DNAJ_EDWI9	No assigned EC number	0.5178	0.6292	0.1485	yes	N/A
B1IRF9	DNAJ_ECOLC	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
A3N3J9	DNAJ_ACTP2	No assigned EC number	0.5172	0.6516	0.1526	yes	N/A
A7ZVV8	DNAJ_ECOHS	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
O34136	DNAJ_DEIPM	No assigned EC number	0.5090	0.6179	0.1774	yes	N/A
B7NHB7	DNAJ_ECO7I	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
B7L4D9	DNAJ_ECO55	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
B7LVP7	DNAJ_ESCF3	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
B7MAD6	DNAJ_ECO45	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
B1LFU5	DNAJ_ECOSM	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
A7ZHA5	DNAJ_ECO24	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
P25303	SCJ1_YEAST	No assigned EC number	0.5272	0.6179	0.1458	yes	N/A
B5YYA8	DNAJ_ECO5E	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
A4IR30	DNAJ_GEOTN	No assigned EC number	0.5517	0.6404	0.1496	yes	N/A
B7MNM2	DNAJ_ECO81	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
A5UF67	DNAJ_HAEIG	No assigned EC number	0.5172	0.6516	0.1518	yes	N/A
B2U233	DNAJ_SHIB3	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
B7N7N9	DNAJ_ECOLU	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
Q326K6	DNAJ_SHIBS	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
P43735	DNAJ_HAEIN	No assigned EC number	0.5172	0.6516	0.1518	yes	N/A
B6HZ11	DNAJ_ECOSE	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A
Q3Z600	DNAJ_SHISS	No assigned EC number	0.5178	0.6292	0.1489	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	89
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-22
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	5e-20
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	5e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-17
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-17
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	6e-17
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-16
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	7e-16
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	9e-16
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-15
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-14
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-14
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-13
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-13
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-13
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	4e-13
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	7e-13
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	8e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	9e-13
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-12
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-12
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	5e-12
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	8e-12
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-11
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-11
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-11
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	8e-11
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	7e-10
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	9e-10
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-09
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	3e-09
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-09
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-09
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	4e-06
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	0.001

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 87.7 bits (218), Expect = 3e-22
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
           AK +YY  L V  +A++ EIK +Y +L+K YHPD+N G + A +KF+EI  AYEVL
Sbjct: 1  MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVL 57

Length = 371

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 75.6 bits (187), Expect = 3e-20
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          +YY  L V  +A+  EIK +Y +L+  YHPDKN G  AA +KF+EI  AYEVL 
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLS 54

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 75.3 bits (186), Expect = 5e-20
 Identities = 26/54 (48%), Positives = 34/54 (62%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          +YY  L V  +A+  EIK +Y +L+  YHPDKN     A +KF+EI  AYEVL 
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 76.0 bits (188), Expect = 5e-18
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   A+++EIK +Y +L+  YHPD+N G + A +KF+EI  AYEVL
Sbjct: 2  AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVL 57

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 68.8 bits (169), Expect = 2e-17
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
           +YY  L V  +A+ +EIK +Y +L+  YHPDKN G  E A +KF+EI  AYEVL
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55

Length = 60

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 74.3 bits (183), Expect = 2e-17
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +YY  L V   A+  EIK +Y +L++  HPD N   E A +KF+EI+ AYEVL
Sbjct: 4  DYYGLLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVL 55

Length = 378

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 73.0 bits (180), Expect = 6e-17
 Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          YY  L V  +A++ EIK +Y +L+K YHPD+NK  + A +KF+EI  AYEVL
Sbjct: 2  YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVL 52

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   A+++EIK +Y +LSK YHPD NK  E A +KF+EI+ AYEVL
Sbjct: 2  AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVL 56

Length = 376

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 70.3 bits (172), Expect = 7e-16
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +YY  L V  +AT+ EIK +Y +L++ YHPD NKG   A ++F+EI+ AY+VL +
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSD 64

Length = 389

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 69.8 bits (171), Expect = 9e-16
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          AK +YY  L V   AT+ EIK +Y RL+K YHPD N G + A +KF+EI  AYE+L +
Sbjct: 3  AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 67.6 bits (165), Expect = 6e-15
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +YY+ L V   A+  EIK +Y +L+  YHPDKN G   A K+F+E++ AYEVL +
Sbjct: 2  DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD 56

Length = 391

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   ATQ EIK +Y RL++ YHPD NK  E A +KF+EI  AY+VL
Sbjct: 1  AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE-AEEKFKEINEAYQVL 55

Length = 382

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 65.1 bits (159), Expect = 4e-14
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
              YY  L V  +A+Q+EIK +Y +LSK YHPD NK    A +K++E+  AYE L +
Sbjct: 2  NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSD 58

Length = 380

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          K +YY  L V   A ++EIK +Y +L+  YHPDKN  ++ A + F+E+  AYEVL
Sbjct: 2  KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVL 56

Length = 397

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAK-KFREITAAYEVLGE 88
          +YY  L V  +A ++E+K +Y RL++ YHPD NK  E  A+ +F+EI  AYEVL +
Sbjct: 4  DYYEILGVSRDADKDELKRAYRRLARKYHPDVNK--EPGAEDRFKEINRAYEVLSD 57

Length = 374

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          ++Y  L V S+A+  EIK +Y +L++  HPD N G  AA ++F+ ++ A++VL +
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSD 64

Length = 392

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +YY  L V   A   EIK++Y +L+  YHPDKNKG++ + +KF+E T AYE+L
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEIL 57

Length = 372

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 7e-13
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          K +YY  L V  +A++ EIK SY +L+  YHPD+N G + A + F+E   AYEVL
Sbjct: 3  KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVL 57

Length = 366

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
           K +YY  L V   ATQ EIK +Y RL K +HPD++  + + A +KF+EI  AYEVL
Sbjct: 2  EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVL 58

Length = 369

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 61.1 bits (148), Expect = 9e-13
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          A  +YY+ L V   A+Q+EIK ++ +L++ YHPD NK S  A +KF+EI  AY VL +
Sbjct: 2  AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSD 58

Length = 291

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
           K +YY  L V   AT +EIK +Y + +  YHPDKN G + A +KF+E   AY+VL
Sbjct: 3  EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58

Length = 386

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          + +YY  L V  +A+++EIK +Y +L+  YHPD+N  +  A +KF+E   AYEVL +
Sbjct: 3  QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRD 59

Length = 373

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 26/56 (46%), Positives = 39/56 (69%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          A  +YY  L +   A+ +EIK ++ +L+  YHPDKNKG++ A +KF+EI  AY+VL
Sbjct: 2  ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVL 57

Length = 380

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 59.2 bits (143), Expect = 5e-12
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          K +YY  L +   A+++EIK +Y +++  YHPDKNKG++ A   F+E T AYEVL +
Sbjct: 2  KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLID 58

Length = 365

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 59.1 bits (142), Expect = 8e-12
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          K +YY  L +  +A + EIK ++ +L+K YHPD+NK  + AA  F EI  A +VL
Sbjct: 1  KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEANDVL 54

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
            +YY  L +  +A+  +IK +Y +L+  YHPDKNK  + A +KF+EI+ AY VL +
Sbjct: 4  TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAYAVLSD 59

Length = 377

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 56.2 bits (135), Expect = 6e-11
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +YY  L V   A+Q ++K +Y +L+K YHPD    ++ A KKF+EI AAY+VL
Sbjct: 4  DYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVL 55

Length = 372

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 56.1 bits (135), Expect = 8e-11
 Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA-AAKKFREITAAYEVLGE 88
          +YY  L V   A+Q +IK ++  L+K +HPD + G++A A +KF+EI+ AYEVL +
Sbjct: 4  DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSD 59

Length = 365

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 56.1 bits (135), Expect = 8e-11
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          ++YY  L V   A+ +EIK++Y +L+  YHPD+NK  + AA+KF +I  AY VL +
Sbjct: 2  MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSD 56

Length = 371

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
           K +YY  L V   A + EIK +Y +L++ YHPD ++  E A +KF+EI+ AY VL +
Sbjct: 3  EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSD 59

Length = 378

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 53.4 bits (128), Expect = 7e-10
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
           K +YY  L V   A++ EI+ +Y +L+K YHPD NK  + A  K  EI  A +VL
Sbjct: 2  KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEAADVL 56

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
           Y  L +  + T +EIK +Y +L+  +HPDK    E    KF+EI+ AYEVL
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE----KFKEISRAYEVL 77

Length = 421

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +++YY  L+V   + Q  IK SY +L+  YHPD+N G + A +KF+ I  AY VL +
Sbjct: 2  ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSD 58

Length = 369

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +YY+ + V        IK +Y RL++ YHPD +K  +A A +F+E+  A+EVL +
Sbjct: 5  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA-RFKEVAEAWEVLSD 58

Length = 306

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +K +YY  L V   A+ +E+K +Y +L++ YHPD NK  +A   KF+E+  AY+ L +
Sbjct: 2  SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAED-KFKEVKEAYDTLSD 58

Length = 371

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 50.6 bits (120), Expect = 5e-09
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
          +YY  L V   A+  EIK +Y +L+  YHPD+N G  + A +KF+EI  AYE+L
Sbjct: 7  DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEIL 60

Length = 237

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 35  YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
           +Y  L VG  A   EI   Y++L++ Y+P K  G+E    KF++I  AY++LG+
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE-GFHKFKKINEAYQILGD 627

Length = 1136

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 36  YSHLQVGSEATQNEIKASYYRLSKLYHPDK--NKG-----SEAAAKKFREITAAYEVL 86
           Y  L V       EIK +Y +L   +HPDK   KG      E A +K +EI AAYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260

Length = 267

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 36  YSHLQVGSEATQNEIKASYYRLSKLYHPDK-----NKGSEAAAKKFREITAAYEVL 86
           Y  L +  + ++ +IK  Y  LS  +HPDK     N+      +K++ IT AY +L
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLL 156

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.9
KOG0713|consensus	336		99.88
KOG0721|consensus	230		99.86
PRK14288	369	chaperone protein DnaJ; Provisional	99.83
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.83
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.81
PRK14296	372	chaperone protein DnaJ; Provisional	99.81
PRK14286	372	chaperone protein DnaJ; Provisional	99.8
PRK14279	392	chaperone protein DnaJ; Provisional	99.8
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.78
PRK14285	365	chaperone protein DnaJ; Provisional	99.78
PRK14295	389	chaperone protein DnaJ; Provisional	99.78
PRK14282	369	chaperone protein DnaJ; Provisional	99.78
PRK14277	386	chaperone protein DnaJ; Provisional	99.78
PRK14294	366	chaperone protein DnaJ; Provisional	99.77
PRK14301	373	chaperone protein DnaJ; Provisional	99.77
PRK14297	380	chaperone protein DnaJ; Provisional	99.77
PRK14287	371	chaperone protein DnaJ; Provisional	99.77
PRK10767	371	chaperone protein DnaJ; Provisional	99.77
PRK14299	291	chaperone protein DnaJ; Provisional	99.77
PRK14283	378	chaperone protein DnaJ; Provisional	99.77
KOG0716|consensus	279		99.76
KOG0691|consensus	296		99.76
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.76
PRK14284	391	chaperone protein DnaJ; Provisional	99.76
PRK14276	380	chaperone protein DnaJ; Provisional	99.76
PRK14281	397	chaperone protein DnaJ; Provisional	99.76
PRK14298	377	chaperone protein DnaJ; Provisional	99.76
KOG0712|consensus	337		99.75
PRK14278	378	chaperone protein DnaJ; Provisional	99.75
PRK14291	382	chaperone protein DnaJ; Provisional	99.75
PRK14280	376	chaperone protein DnaJ; Provisional	99.75
KOG0717|consensus	508		99.75
PRK14289	386	chaperone protein DnaJ; Provisional	99.74
PRK14290	365	chaperone protein DnaJ; Provisional	99.73
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.72
KOG0715|consensus	288		99.72
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.72
PRK14300	372	chaperone protein DnaJ; Provisional	99.71
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.7
PRK14292	371	chaperone protein DnaJ; Provisional	99.7
PRK14293	374	chaperone protein DnaJ; Provisional	99.7
PTZ00100	116	DnaJ chaperone protein; Provisional	99.69
PHA03102	153	Small T antigen; Reviewed	99.68
KOG0719|consensus	264		99.67
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.65
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.65
KOG0718|consensus	546		99.62
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.62
PRK05014	171	hscB co-chaperone HscB; Provisional	99.59
KOG0722|consensus	329		99.57
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.56
PRK03578	176	hscB co-chaperone HscB; Provisional	99.55
PRK01356	166	hscB co-chaperone HscB; Provisional	99.55
PRK00294	173	hscB co-chaperone HscB; Provisional	99.54
PHA02624	647	large T antigen; Provisional	99.5
KOG0720|consensus	490		99.45
KOG1150|consensus	250		99.41
KOG0624|consensus	504		99.39
KOG0550|consensus	486		99.33
PRK01773	173	hscB co-chaperone HscB; Provisional	99.28
KOG0714|consensus	306		99.27
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.05
KOG0568|consensus	342		99.02
KOG1789|consensus	2235		98.91
KOG0723|consensus	112		98.89
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.78
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.98
KOG0431|consensus	453		97.73
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.46
KOG3192|consensus	168		97.28
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.32
PF13446	62	RPT: A repeated domain in UCH-protein	95.19
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	94.5
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	92.03
KOG0724|consensus	335		89.78
KOG3442|consensus	132		85.07
COG5552	88	Uncharacterized conserved protein [Function unknow	80.77

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.8e-24  Score=154.01  Aligned_cols=59  Identities=49%  Similarity=0.832  Sum_probs=56.3

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|||.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~   60 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP   60 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence            46899999999999999999999999999999999997799999999999999999983

>KOG0713|consensus

Probab=99.88  E-value=9.9e-23  Score=144.33  Aligned_cols=61  Identities=44%  Similarity=0.667  Sum_probs=58.2

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ....+|+|+||||+.+|+..|||+|||+||+++|||||+++|.|.+.|+.|+.||++|||.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp   72 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP   72 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence            3467999999999999999999999999999999999999999999999999999999984

>KOG0721|consensus

Probab=99.86  E-value=1.1e-21  Score=132.14  Aligned_cols=86  Identities=30%  Similarity=0.478  Sum_probs=80.0

Q ss_pred             CchhHHHHHHHHHHHHhhhhhhhhcccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHH
Q psy3538           3 PFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAA   82 (89)
Q Consensus         3 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~A   82 (89)
                      ..|..+++++|+++.+...............|||+||||+++++.+|||++||+|++++||||+++.++.++.|..|++|
T Consensus        69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA  148 (230)
T KOG0721|consen   69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA  148 (230)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence            45788999999999999988888888888999999999999999999999999999999999998767789999999999


Q ss_pred             HHHhhC
Q psy3538          83 YEVLGE   88 (89)
Q Consensus        83 y~~L~d   88 (89)
                      |+.|+|
T Consensus       149 Y~aLTD  154 (230)
T KOG0721|consen  149 YQALTD  154 (230)
T ss_pred             HHHhcc
Confidence            999997

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=8e-21  Score=137.35  Aligned_cols=57  Identities=42%  Similarity=0.752  Sum_probs=54.3

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||++|+|
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd   58 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSD   58 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence            479999999999999999999999999999999998667899999999999999998

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.83  E-value=2.9e-20  Score=101.01  Aligned_cols=55  Identities=47%  Similarity=0.802  Sum_probs=52.3

Q ss_pred             ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      |||++|||+++++.++||++|+++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999998657789999999999999987

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.81  E-value=9.6e-20  Score=100.60  Aligned_cols=57  Identities=49%  Similarity=0.799  Sum_probs=53.4

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC-cHHHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG-SEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|+|+||||+++++.++||++|+++++.+|||++++ .+.+.+.|+.|++||++|+|.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~   58 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP   58 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence            489999999999999999999999999999999986 578999999999999999973

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.1e-20  Score=133.32  Aligned_cols=57  Identities=42%  Similarity=0.621  Sum_probs=53.7

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~   59 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDK   59 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCH
Confidence            4799999999999999999999999999999999975 77999999999999999983

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.6e-20  Score=132.10  Aligned_cols=58  Identities=45%  Similarity=0.763  Sum_probs=54.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.+|||+|||+++++||||+++++++++++|++|++||++|+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   60 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP   60 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence            4799999999999999999999999999999999987678999999999999999983

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9.6e-20  Score=132.62  Aligned_cols=58  Identities=36%  Similarity=0.672  Sum_probs=55.2

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.+|||+|||+++++||||++++++.++++|++|++||++|+|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~   65 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP   65 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch
Confidence            4799999999999999999999999999999999987788999999999999999983

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.78  E-value=5.2e-19  Score=99.03  Aligned_cols=55  Identities=51%  Similarity=0.815  Sum_probs=51.7

Q ss_pred             ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH-HHHHHHHHHHHHHHHhhC
Q psy3538          34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE-AAAKKFREITAAYEVLGE   88 (89)
Q Consensus        34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d   88 (89)
                      |+|+||||+++++.++||++|+++++++|||++++.. .+.+.|..|++||++|+|
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~   56 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSD   56 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCC
Confidence            6899999999999999999999999999999987754 689999999999999987

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.3e-19  Score=128.82  Aligned_cols=57  Identities=44%  Similarity=0.708  Sum_probs=54.5

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||++|||+++|+.+|||+|||+++++||||++++++.++++|++|++||++|+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   59 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD   59 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence            699999999999999999999999999999999987788999999999999999983

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=4.8e-19  Score=128.87  Aligned_cols=58  Identities=45%  Similarity=0.796  Sum_probs=54.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   65 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE   65 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence            4799999999999999999999999999999999987678999999999999999983

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=5.7e-19  Score=127.67  Aligned_cols=58  Identities=48%  Similarity=0.749  Sum_probs=54.0

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++ +.++++|++|++||++|+|.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~   61 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP   61 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh
Confidence            47999999999999999999999999999999999754 66899999999999999983

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=5.8e-19  Score=128.27  Aligned_cols=57  Identities=51%  Similarity=0.846  Sum_probs=54.4

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+++++.+|||+|||+++++||||++++++.++++|++|++||++|+|
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d   60 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD   60 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCC
Confidence            369999999999999999999999999999999998777899999999999999998

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.7e-19  Score=127.21  Aligned_cols=58  Identities=45%  Similarity=0.767  Sum_probs=54.9

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...|||+||||+++|+.+|||+|||+++++||||++++++.+++.|++|++||++|+|
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d   59 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSD   59 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhcc
Confidence            3579999999999999999999999999999999998777899999999999999998

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.9e-19  Score=127.45  Aligned_cols=58  Identities=41%  Similarity=0.733  Sum_probs=54.9

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++++.++||+|||++++++|||+++++++++++|++|++||++|+|.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   60 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA   60 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence            4799999999999999999999999999999999987778999999999999999983

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.7e-19  Score=127.40  Aligned_cols=58  Identities=43%  Similarity=0.755  Sum_probs=54.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.++||+|||+++++||||++++++.++++|++|++||++|+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   60 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP   60 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence            4699999999999999999999999999999999987778999999999999999983

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.7e-19  Score=127.12  Aligned_cols=57  Identities=40%  Similarity=0.725  Sum_probs=53.5

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||++|||+++|+.+|||+|||+++++||||++++ ++++++|++|++||++|+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~   59 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDP   59 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcH
Confidence            4699999999999999999999999999999999975 77899999999999999983

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=8.3e-19  Score=126.83  Aligned_cols=58  Identities=47%  Similarity=0.800  Sum_probs=54.6

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.++||+|||++++++|||++++++.++++|++|++||++|+|.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~   60 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP   60 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch
Confidence            4799999999999999999999999999999999987677999999999999999973

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=9.6e-19  Score=123.15  Aligned_cols=56  Identities=45%  Similarity=0.758  Sum_probs=53.2

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+++|+.+|||+|||++++++|||++++ +.++++|++|++||++|+|
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d   58 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSD   58 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999975 7789999999999999997

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7e-19  Score=127.54  Aligned_cols=57  Identities=44%  Similarity=0.740  Sum_probs=54.1

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||++|||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~   60 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDD   60 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchh
Confidence            5799999999999999999999999999999999986 77999999999999999984

>KOG0716|consensus

Probab=99.76  E-value=8.1e-19  Score=121.52  Aligned_cols=59  Identities=39%  Similarity=0.674  Sum_probs=56.2

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ...|.|+|||++++++.++||++||++++++|||+++++|++.++|++||+||++|+|.
T Consensus        29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~   87 (279)
T KOG0716|consen   29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP   87 (279)
T ss_pred             chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence            35789999999999999999999999999999999999999999999999999999984

>KOG0691|consensus

Probab=99.76  E-value=1.1e-18  Score=122.93  Aligned_cols=57  Identities=46%  Similarity=0.796  Sum_probs=55.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+.+++..+|+++||..++++||||||++|.+.+.|+.|.+||++|+|
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D   60 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSD   60 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999999999999999999999999998

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.76  E-value=8.9e-19  Score=128.58  Aligned_cols=55  Identities=38%  Similarity=0.634  Sum_probs=51.2

Q ss_pred             CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....|||+||||+++|+.+|||+|||+++++||||++++    .++|++|++||++|+|
T Consensus        25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD   79 (421)
T PTZ00037         25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSD   79 (421)
T ss_pred             ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhcc
Confidence            346899999999999999999999999999999999864    5899999999999998

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.4e-18  Score=126.51  Aligned_cols=56  Identities=46%  Similarity=0.843  Sum_probs=53.7

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|||+||||+++|+.++||+|||+++++||||++++++.++++|++|++||++|+|
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d   56 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD   56 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC
Confidence            38999999999999999999999999999999999778899999999999999998

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.2e-18  Score=126.44  Aligned_cols=56  Identities=46%  Similarity=0.813  Sum_probs=53.2

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+++|+.+|||+|||+++++||||++++ +.++++|++|++||++|+|
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d   58 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSD   58 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999986 6789999999999999998

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.4e-18  Score=126.66  Aligned_cols=56  Identities=43%  Similarity=0.752  Sum_probs=53.8

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|||+||||+++++.++||+|||++++++|||++++++.++++|++|++||++|+|
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d   58 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSN   58 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhh
Confidence            69999999999999999999999999999999998777889999999999999998

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.6e-18  Score=125.71  Aligned_cols=57  Identities=42%  Similarity=0.730  Sum_probs=53.6

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||+||||+++|+.+|||+|||+++++||||++++ +.++++|++|++||++|+|.
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~   60 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDA   60 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcch
Confidence            4699999999999999999999999999999999975 67899999999999999983

>KOG0712|consensus

Probab=99.75  E-value=1.3e-18  Score=124.18  Aligned_cols=54  Identities=46%  Similarity=0.790  Sum_probs=52.1

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...+|+||||+++|+.+|||+|||+|+++||||||++   +.++|++|..||++|||
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd   56 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSD   56 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999998   89999999999999998

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.7e-18  Score=125.63  Aligned_cols=56  Identities=45%  Similarity=0.719  Sum_probs=53.2

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||+||||+++|+.++||+|||+++++||||++++ ++++++|++|++||++|+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~   58 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDP   58 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchh
Confidence            699999999999999999999999999999999985 77999999999999999973

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.9e-18  Score=125.47  Aligned_cols=56  Identities=52%  Similarity=0.821  Sum_probs=53.3

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+++|+.++||+|||+++++||||++++ +.++++|++|++||++|+|
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd   57 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSD   57 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999986 6789999999999999998

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.3e-18  Score=124.82  Aligned_cols=56  Identities=54%  Similarity=0.853  Sum_probs=53.1

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|||+||||+++|+.++||+|||+++++||||++++ +.++++|++|++||++|+|
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d   58 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSD   58 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhcc
Confidence            4699999999999999999999999999999999875 6789999999999999998

>KOG0717|consensus

Probab=99.75  E-value=2.5e-18  Score=125.93  Aligned_cols=61  Identities=44%  Similarity=0.657  Sum_probs=56.2

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .....+||+||||..+++..+||++||+++++||||++|+. +++.+.|+.|+.||+||||.
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp   65 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDP   65 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcCh
Confidence            34567999999999999999999999999999999998765 78999999999999999984

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=5.8e-18  Score=123.00  Aligned_cols=58  Identities=45%  Similarity=0.721  Sum_probs=55.1

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|||++|||+++++.+|||+|||++++++|||+++++++++++|++|++||++|+|.
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~   61 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP   61 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence            4799999999999999999999999999999999987788999999999999999983

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=7.2e-18  Score=121.82  Aligned_cols=57  Identities=42%  Similarity=0.730  Sum_probs=53.5

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH-HHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE-AAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||+||||+++|+.+|||+|||+|++++|||++++++ .++++|+.|++||++|+|.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~   60 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP   60 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence            69999999999999999999999999999999998653 7999999999999999983

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.72  E-value=1.1e-17  Score=118.36  Aligned_cols=56  Identities=36%  Similarity=0.659  Sum_probs=52.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|+|++|||+++++.++||+|||++++++|||++++ +.++++|++|++||++|+|
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~   58 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSD   58 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhh
Confidence            3699999999999999999999999999999999875 6789999999999999997

>KOG0715|consensus

Probab=99.72  E-value=1.2e-17  Score=117.72  Aligned_cols=58  Identities=48%  Similarity=0.797  Sum_probs=54.1

Q ss_pred             CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....|||+||||+++++..|||+||++|+++||||.+.+ +++.++|++|.+|||+|+|
T Consensus        40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd   97 (288)
T KOG0715|consen   40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSD   97 (288)
T ss_pred             CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcC
Confidence            333499999999999999999999999999999999998 5899999999999999997

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.72  E-value=1.2e-17  Score=120.10  Aligned_cols=55  Identities=49%  Similarity=0.851  Sum_probs=51.7

Q ss_pred             ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      |||+||||+++++.++||+|||++++++|||++++ +.++++|++|++||++|+|.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~   55 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDP   55 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhCh
Confidence            69999999999999999999999999999999974 66899999999999999983

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.3e-17  Score=120.69  Aligned_cols=56  Identities=45%  Similarity=0.771  Sum_probs=52.5

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||+||||+++++.+|||+|||+++++||||++++ +.++++|++|++||++|+|.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~   58 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDE   58 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhH
Confidence            699999999999999999999999999999999874 66889999999999999973

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.70  E-value=2.4e-17  Score=121.10  Aligned_cols=88  Identities=25%  Similarity=0.462  Sum_probs=79.8

Q ss_pred             CCCchhHHHHHHHHHHHHhhhhhhhhc-ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cHHHHH
Q psy3538           1 MYPFRNNVCNLTWAVVKYHRFSTSALY-SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG-----SEAAAK   74 (89)
Q Consensus         1 ~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-----~~~~~~   74 (89)
                      +|..|..+.++||.++++..+..+.+. ......|+|+|||++.+++.++||++||+|+.++||||.+.     .++.++
T Consensus        65 If~lR~If~ivgWl~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee  144 (610)
T COG5407          65 IFKLRKIFTIVGWLVISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEE  144 (610)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHH
Confidence            356789999999999999998888866 66778999999999999999999999999999999999876     267999


Q ss_pred             HHHHHHHHHHHhhC
Q psy3538          75 KFREITAAYEVLGE   88 (89)
Q Consensus        75 ~f~~i~~Ay~~L~d   88 (89)
                      .+++|++||..|+|
T Consensus       145 ~y~~ItkAY~~lTd  158 (610)
T COG5407         145 KYKTITKAYGLLTD  158 (610)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999999987

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=3.5e-17  Score=118.41  Aligned_cols=55  Identities=45%  Similarity=0.799  Sum_probs=52.5

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|||+||||+++++.++||+|||++++++|||++++ +.++++|+.|++||++|+|
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d   56 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSD   56 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcc
Confidence            589999999999999999999999999999999985 7789999999999999998

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=3.3e-17  Score=118.73  Aligned_cols=55  Identities=45%  Similarity=0.821  Sum_probs=52.4

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|||+||||+++++.++||+|||++++++|||++++ +.++++|+.|++||++|+|
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~   57 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSD   57 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhc
Confidence            699999999999999999999999999999999875 6689999999999999997

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.69  E-value=2.3e-16  Score=98.00  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG   87 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~   87 (89)
                      ...+..++|+||||+++++.++||++||++++++|||++++    .+.|++|++||++|.
T Consensus        60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~  115 (116)
T PTZ00100         60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence            45556899999999999999999999999999999999754    578899999999985

>PHA03102 Small T antigen; Reviewed

Probab=99.68  E-value=6.3e-17  Score=104.92  Aligned_cols=55  Identities=22%  Similarity=0.366  Sum_probs=50.2

Q ss_pred             cccChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      +...+|+||||++++  +.++||+|||++++++|||++++    ++.|+.|++||++|+|.
T Consensus         3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~   59 (153)
T PHA03102          3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRES   59 (153)
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhH
Confidence            346789999999999  99999999999999999999875    57999999999999873

>KOG0719|consensus

Probab=99.67  E-value=1.2e-16  Score=109.00  Aligned_cols=60  Identities=37%  Similarity=0.612  Sum_probs=54.6

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCC--CcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNK--GSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~--~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||..+++..+|++||+++++++|||+++  +..++.+.|+.|+.||+||+|
T Consensus        10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD   71 (264)
T KOG0719|consen   10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD   71 (264)
T ss_pred             cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH
Confidence            345569999999999999999999999999999999995  346799999999999999987

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=3.3e-16  Score=103.10  Aligned_cols=58  Identities=43%  Similarity=0.761  Sum_probs=54.7

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHH-HHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA-AAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~f~~i~~Ay~~L~d   88 (89)
                      ...++|+||||+++++..+|+++||++++++|||++++++. +.+.|+.|++||++|+|
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd   62 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD   62 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhC
Confidence            45789999999999999999999999999999999998775 99999999999999997

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.65  E-value=2.8e-16  Score=123.32  Aligned_cols=58  Identities=34%  Similarity=0.694  Sum_probs=54.2

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ...+||+||||+++|+..+||+|||++++++|||+++++ .+.++|+.|.+||++|||.
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp  628 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDI  628 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCH
Confidence            457999999999999999999999999999999999874 6889999999999999983

>KOG0718|consensus

Probab=99.62  E-value=6.3e-16  Score=113.73  Aligned_cols=60  Identities=43%  Similarity=0.730  Sum_probs=54.6

Q ss_pred             CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---HHHHHHHHHHHHHHHHhhCC
Q psy3538          30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..+.|+|.+|||+++|+.+||++|||++++.|||||..++   +.|++.|+.|.+|||+|+|.
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp   68 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDP   68 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcCh
Confidence            4456999999999999999999999999999999998753   45999999999999999994

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.62  E-value=9.5e-16  Score=107.05  Aligned_cols=59  Identities=36%  Similarity=0.471  Sum_probs=52.5

Q ss_pred             CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC---c----HHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG---S----EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~----~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....++|++|||++++|.++||++||++++++|||+..+   +    +.++++|+.|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            455799999999999999999999999999999999643   1    4589999999999999974

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.59  E-value=3.8e-15  Score=98.19  Aligned_cols=57  Identities=21%  Similarity=0.427  Sum_probs=49.8

Q ss_pred             cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||++|||+++  ++..+|+++||++++++|||+..+.+     .+.+.+..|++||++|+|+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp   64 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP   64 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence            489999999995  68899999999999999999976532     2677899999999999985

>KOG0722|consensus

Probab=99.57  E-value=4.8e-15  Score=102.68  Aligned_cols=59  Identities=36%  Similarity=0.569  Sum_probs=54.3

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      -...+|+|+||||+++++..+|.+|||+|++++|||++.+ +++.+.|..|.+||++|.|
T Consensus        29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd   87 (329)
T KOG0722|consen   29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKD   87 (329)
T ss_pred             cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccc
Confidence            3567899999999999999999999999999999999998 5566999999999999986

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.56  E-value=7.7e-15  Score=113.22  Aligned_cols=55  Identities=42%  Similarity=0.706  Sum_probs=52.5

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|||+||||+++++.++||++||++++++|||++++ +.+.++|+.|++||++|+|
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSD   56 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSN   56 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999887 7788999999999999997

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.55  E-value=1.4e-14  Score=95.86  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             cccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcHH-----HHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSEA-----AAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~   89 (89)
                      ...|||++|||+++  ++..+|+++|+++++++|||+.+..+.     +.+.+..||+||++|+|.
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p   69 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDP   69 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            45799999999985  689999999999999999999875433     445568999999999974

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.55  E-value=1.6e-14  Score=94.80  Aligned_cols=57  Identities=26%  Similarity=0.434  Sum_probs=49.3

Q ss_pred             cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||++|||+++  ++..+|+++||++++++|||+..+..   .+.+.+..|++||++|+|.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp   63 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDA   63 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            589999999986  78999999999999999999987532   2455688999999999973

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.54  E-value=2.2e-14  Score=94.75  Aligned_cols=59  Identities=15%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             cccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ...|||++||++++  .+..+|+++||++++++|||+..+.+     .+.+.+..||+||++|+|.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p   67 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSP   67 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            46899999999996  67899999999999999999986542     3677899999999999973

>PHA02624 large T antigen; Provisional

Probab=99.50  E-value=2.3e-14  Score=108.86  Aligned_cols=57  Identities=25%  Similarity=0.382  Sum_probs=51.8

Q ss_pred             cCcccChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..+..++|++|||++++  +.++||++||++++++|||++++    ++.|+.|++||++|+|+
T Consensus         7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~   65 (647)
T PHA02624          7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEG   65 (647)
T ss_pred             hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcH
Confidence            34467999999999999  99999999999999999999765    68999999999999974

>KOG0720|consensus

Probab=99.45  E-value=1.3e-13  Score=101.41  Aligned_cols=57  Identities=32%  Similarity=0.583  Sum_probs=54.5

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...|+|.+|||+.+++.++||+.||+++...|||||-. +.++|.|+.|+.||++|+|
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~  289 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGD  289 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcc
Confidence            37899999999999999999999999999999999984 8999999999999999987

>KOG1150|consensus

Probab=99.41  E-value=5e-13  Score=89.91  Aligned_cols=61  Identities=39%  Similarity=0.585  Sum_probs=57.1

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ++...-|+|+||.|.++.+.++||+.||+++...|||+|+++ +.+...|-.+.+||..|-|
T Consensus        48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n  109 (250)
T KOG1150|consen   48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLEN  109 (250)
T ss_pred             ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence            556788999999999999999999999999999999999998 7899999999999999865

>KOG0624|consensus

Probab=99.39  E-value=5.4e-13  Score=96.41  Aligned_cols=62  Identities=39%  Similarity=0.594  Sum_probs=56.7

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhCC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ......|||.||||.++++..||-+|||+++.+||||...+.+   .++.+|..|..|-++|+|.
T Consensus       389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~  453 (504)
T KOG0624|consen  389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP  453 (504)
T ss_pred             HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence            4567789999999999999999999999999999999998853   4999999999999999983

>KOG0550|consensus

Probab=99.33  E-value=1.3e-12  Score=95.57  Aligned_cols=61  Identities=36%  Similarity=0.666  Sum_probs=57.2

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .....+||.|||++.+++..+||++||++++.+|||++.++ .+++.+|+++-+||.+|+|+
T Consensus       369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~  430 (486)
T KOG0550|consen  369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP  430 (486)
T ss_pred             HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence            45578999999999999999999999999999999999887 78999999999999999986

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.28  E-value=1.5e-11  Score=81.34  Aligned_cols=57  Identities=23%  Similarity=0.326  Sum_probs=49.8

Q ss_pred             cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||++||+++.  .+..+++++|+++.+++|||+..+.     ..+.+....||+||++|+|.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdP   65 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDP   65 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCCh
Confidence            589999999985  8999999999999999999997654     23566789999999999984

>KOG0714|consensus

Probab=99.27  E-value=5.2e-12  Score=86.55  Aligned_cols=57  Identities=44%  Similarity=0.764  Sum_probs=51.2

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..|+|.+|||.++++..+|++||+++++++|||+++.. ..++.+|.+|.+||++|+|
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~   59 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSD   59 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCC
Confidence            47899999999999999999999999999999998774 3466689999999999987

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.05  E-value=6.3e-10  Score=72.51  Aligned_cols=46  Identities=26%  Similarity=0.430  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhCC
Q psy3538          44 EATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        44 ~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..+..+|+++|+++++++|||+.++.     ..+.+.+..|++||++|+|.
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p   52 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP   52 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh
Confidence            35789999999999999999996542     23778999999999999984

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0568|consensus

Probab=99.02  E-value=4.6e-10  Score=77.48  Aligned_cols=59  Identities=31%  Similarity=0.495  Sum_probs=52.3

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHH-Hhh
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYE-VLG   87 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~-~L~   87 (89)
                      +......+|.+|||..+++.++++.+|..|++++|||.+.. +...++|++|.+||. +|+
T Consensus        42 ske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   42 SKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             hHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999999999999875 667899999999996 665

>KOG1789|consensus

Probab=98.91  E-value=2.4e-09  Score=85.87  Aligned_cols=57  Identities=30%  Similarity=0.496  Sum_probs=49.4

Q ss_pred             ccCcccChhhhhccCCC----CCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538          28 SSQAKVNYYSHLQVGSE----ATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG   87 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~   87 (89)
                      ...+..+.|+||+|+.+    -+.++||++|++++.+|||||||.   ..+.|..+++|||.|+
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence            45667789999999863    245889999999999999999975   7899999999999986

>KOG0723|consensus

Probab=98.89  E-value=6.7e-09  Score=63.51  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             hhhcccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          24 SALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        24 ~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ..+.+.++..+.-.||||+++++.+.||.++|++....|||++++    --.-..||||+++|..
T Consensus        47 GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS----PYlAsKINEAKdlLe~  107 (112)
T KOG0723|consen   47 GGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS----PYLASKINEAKDLLEG  107 (112)
T ss_pred             cccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC----HHHHHHHHHHHHHHhc
Confidence            445578888999999999999999999999999999999999987    2344569999999863

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=7.1e-09  Score=72.95  Aligned_cols=58  Identities=33%  Similarity=0.492  Sum_probs=51.0

Q ss_pred             cccChhhhhccCC---CCCHHHHHHHHHHHHHhhCCCCC--CCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGS---EATQNEIKASYYRLSKLYHPDKN--KGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPDk~--~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...|.|.+||++.   .+++.+|.++.++.+.+||||+.  +++-++.+.|.+|+.||++|+|
T Consensus        41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D  103 (379)
T COG5269          41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD  103 (379)
T ss_pred             hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhcc
Confidence            4589999999996   67889999999999999999995  3335689999999999999997

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=5.7e-06  Score=54.60  Aligned_cols=55  Identities=35%  Similarity=0.471  Sum_probs=48.4

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-------HHHHHHHHHHHHHHHHh
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-------EAAAKKFREITAAYEVL   86 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~f~~i~~Ay~~L   86 (89)
                      ..++|.+||+....+..+|+++|+++....|||+....       +...+.++.|++||+.+
T Consensus       112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            37999999999999999999999999999999995331       56899999999999754

>KOG0431|consensus

Probab=97.73  E-value=5.2e-05  Score=56.79  Aligned_cols=51  Identities=22%  Similarity=0.318  Sum_probs=39.6

Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-------HHHHHHHHHHHHHHHH
Q psy3538          35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-------EAAAKKFREITAAYEV   85 (89)
Q Consensus        35 ~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~f~~i~~Ay~~   85 (89)
                      =|.=+++..=.+.++||++||+.++..||||.+..       --+++.|-.+.+|++.
T Consensus       390 ~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  390 GWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             CcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            34445555667999999999999999999998764       1267777888888765

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.46  E-value=0.00034  Score=44.28  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG   68 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~   68 (89)
                      ..+......||||++..+.++|.+.|.+|....+|+++++
T Consensus        54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS   93 (127)
T PF03656_consen   54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS   93 (127)
T ss_dssp             ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-
T ss_pred             CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC
Confidence            3555688999999999999999999999999999999876

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG3192|consensus

Probab=97.28  E-value=0.00061  Score=44.53  Aligned_cols=59  Identities=22%  Similarity=0.428  Sum_probs=47.7

Q ss_pred             CcccChhhhhccCC--CCCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGS--EATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....++|.++|...  ..+++.++-.|.-..++.|||+....     ..+.+....+++||.+|+|
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~   70 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKD   70 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHh
Confidence            35678999998664  56777888899999999999994432     4577888999999999987

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0029  Score=41.70  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=42.0

Q ss_pred             ChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhC
Q psy3538          34 NYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGE   88 (89)
Q Consensus        34 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d   88 (89)
                      +++..+|..+..  +.+.++..|+.+.+.+|||+....+     .+.+.+..++.||.+|.|
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~   63 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKD   63 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHH
Confidence            345556665533  4567999999999999999987642     256788999999999876

>PF13446 RPT: A repeated domain in UCH-protein

Probab=95.19  E-value=0.068  Score=29.27  Aligned_cols=29  Identities=10%  Similarity=0.169  Sum_probs=26.4

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHH
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSK   59 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~   59 (89)
                      ...++|++|||+++.+.+.|-.+|+....
T Consensus         3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    3 DVEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             CHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            34678999999999999999999999988

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=94.50  E-value=0.15  Score=34.44  Aligned_cols=37  Identities=32%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy3538          42 GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL   86 (89)
Q Consensus        42 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L   86 (89)
                      +++|+.+||++|+.++..+|-    ++    ++.-..|..||+.+
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~----gd----~~~~~~IEaAYD~I   37 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYA----GD----EKSREAIEAAYDAI   37 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHHH
Confidence            578999999999999999993    22    35555688888764

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=92.03  E-value=0.73  Score=28.47  Aligned_cols=44  Identities=9%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCcHH----HHHHHHHHHHHHHHhh
Q psy3538          44 EATQNEIKASYYRLSKLYHPDKNKGSEA----AAKKFREITAAYEVLG   87 (89)
Q Consensus        44 ~a~~~~Ik~ayr~l~~~~HPDk~~~~~~----~~~~f~~i~~Ay~~L~   87 (89)
                      ..+..+++.+.|.+-++.|||..+..|+    -++-++.++.-.+.|+
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~   52 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK   52 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence            4567789999999999999998765432    3444555555444443

>KOG0724|consensus

Probab=89.78  E-value=0.56  Score=33.58  Aligned_cols=44  Identities=25%  Similarity=0.468  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCC----cHHHHHHHHHHHHHHHHhhC
Q psy3538          45 ATQNEIKASYYRLSKLYHPDKNKG----SEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        45 a~~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ++..+|+.+|+..+...||++...    ....++.+++|.+||.+|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~   51 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD   51 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence            567789999999999999998742    13467889999999999985

>KOG3442|consensus

Probab=85.07  E-value=6.1  Score=25.08  Aligned_cols=39  Identities=18%  Similarity=0.159  Sum_probs=34.5

Q ss_pred             CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538          30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG   68 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~   68 (89)
                      .+-.....||+|++....++|.+.|..|.....+.+++.
T Consensus        56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS   94 (132)
T KOG3442|consen   56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS   94 (132)
T ss_pred             ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence            344567899999999999999999999999999999875

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=80.77  E-value=8.8  Score=22.29  Aligned_cols=35  Identities=11%  Similarity=0.145  Sum_probs=28.1

Q ss_pred             ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538          34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG   68 (89)
Q Consensus        34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~   68 (89)
                      |--+++|+++-++..||+.+-++.+++..--..++
T Consensus         4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS   38 (88)
T COG5552           4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS   38 (88)
T ss_pred             chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence            44578999999999999999999998875544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	89
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		2e-10
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-09
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-09
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-09
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-09
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-07
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-06
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-06
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-06
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-06
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-06
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-05
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		3e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		5e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		8e-05
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-04
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		4e-04
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		5e-04

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          S ++   Y  L V S ATQ +IKA+YYR   LYHPD+N GS  AA++F  I+ AY VLG
Sbjct: 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 71

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   A + EI+ +Y RL+  YHPD+N+G + A  KF+EI  AYEVL
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   A + EI+ +Y RL+  YHPD+N+G + A  KF+EI  AYEVL
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   A + EI+ +Y RL+  YHPD+N+G + A  KF+EI  AYEVL
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          SS +  +YY  L V   A+Q EIK +YY+L+K YHPD NK    A +KF ++  AYEVL 
Sbjct: 2  SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
Query: 88 E 88
          +
Sbjct: 62 D 62

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          YY  L V   A++ +IK ++++L+  YHPDKNK  +A A KFREI  AYE L +
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA-KFREIAEAYETLSD 61

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLG 87
          S    NYY  L V + A+  +IK +Y +L+  +HPDKN  + E A KKF+ ++ AYEVL 
Sbjct: 5  SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLS 64
Query: 88 E 88
          +
Sbjct: 65 D 65

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +YY  L +   A+  EIK +Y R +  YHPDKNK    A +KF+EI  AY+VL
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVL 55

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          YY  L V   ATQ E+K +Y +L+  YHPDKN       +KF++I+ AYEVL +
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSD 58

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKN-KGSEAAAKKFREITAAYEVLG 87
          S   V+YY  L V  +A+   IK +Y +L+  +HPDKN +  E A ++F+++  AYEVL 
Sbjct: 5  SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLS 64
Query: 88 E 88
          +
Sbjct: 65 D 65

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          Y  L +   AT ++IK SY +L+  YHPDKN  +  AA KF+EI  A+ +L +
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +  YY  L V  +A+ NE+K +Y +++  +HPDKN      A++F++I+ AYEVL +
Sbjct: 7  ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSD 60

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
           +YY  L V   A+ ++IK +Y R +  +HPDKN  + E A KKF+E+  AYEVL
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 23 TSALYSSQAKVNY--YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREIT 80
          +S +  S + +++  Y  L V   A+Q +IK +Y +L++ +HPDKNK    A  +F +I+
Sbjct: 5  SSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQIS 63
Query: 81 AAYEVL 86
           AYE+L
Sbjct: 64 KAYEIL 69

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          N+YS L V   A+  EI+ ++ +L+   HPDKN  +  A   F +I  AYEVL +
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          N+YS L V   A+  EI+ ++ +L+   HPDKN  +  A   F +I  AYEVL
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 55

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +YY+ L V        IK +Y RL++ YHPD +K ++A A KF+++  A+EVL
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA-KFKDLAEAWEVL 80

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          +YY+ + V        IK +Y RL++ YHPD +K  +A A +F+E+  A+EVL +
Sbjct: 6  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA-RFKEVAEAWEVLSD 59

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          SS +  +YY  L V   A+  ++K +Y RL+  +HPDKN  +  A + F+ I  AY VL
Sbjct: 2  SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVL 59

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEV 85
          K ++YS L     A  +++K  Y +L  LYHPDK          E   +KF EI  A+++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 86 LG 87
          LG
Sbjct: 75 LG 76

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
          Y  L V   A + E+K  Y + +  YHPDK  G     +KF+EI+ A+E+L +
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND 60

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEV 85
          K ++YS L     A  +++K  Y +L  +YHPDK          E   +KF EI  A+++
Sbjct: 9  KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 86 LG 87
          LG
Sbjct: 69 LG 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	5e-20
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-19
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-18
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-18
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-18
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-17
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	9e-17
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-16
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-16
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-16
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-16
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-16
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	5e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	7e-16
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-15
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-15
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-15
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	4e-15
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-15
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	8e-15
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-14
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	4e-12
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	5e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-09
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	4e-09
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	9e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-08
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	9e-08
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-07
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	4e-07
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	6e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 75.9 bits (187), Expect = 5e-20
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query: 22 STSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITA 81
          S S    S ++   Y  L V S ATQ +IKA+YYR   LYHPD+N GS  AA++F  I+ 
Sbjct: 6  SGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQ 65

Query: 82 AYEVLG 87
          AY VLG
Sbjct: 66 AYVVLG 71

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 78.8 bits (195), Expect = 3e-19
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          ++    +YY+ L V        IK +Y RL++ YHPD +K ++A A KF+++  A+EVL 
Sbjct: 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA-KFKDLAEAWEVLK 81

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 71.9 bits (177), Expect = 2e-18
 Identities = 28/56 (50%), Positives = 37/56 (66%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          AK +YY  L V   A + EI+ +Y RL+  YHPD+N+G + A  KF+EI  AYEVL
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 71.1 bits (175), Expect = 2e-18
 Identities = 29/59 (49%), Positives = 38/59 (64%)

Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          SS +  +YY  L V   A+Q EIK +YY+L+K YHPD NK    A +KF ++  AYEVL
Sbjct: 2  SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 71.7 bits (176), Expect = 4e-18
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          S +  + Y  L +   AT ++IK SY +L+  YHPDKN  +  AA KF+EI  A+ +L
Sbjct: 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 68.6 bits (168), Expect = 5e-17
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 27 YSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          Y S+   +YY+ L     ++  +I A +   +   HPDK+  +  A + F+++  A E+L
Sbjct: 14 YRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEIL 73

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 67.3 bits (165), Expect = 9e-17
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG-SEAAAKKFREITAAYEVL 86
           S    NYY  L V + A+  +IK +Y +L+  +HPDKN    E A KKF+ ++ AYEVL
Sbjct: 4  GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 69.5 bits (170), Expect = 2e-16
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +YS L V   A+  EI+ ++ +L+   HPDKN  +  A   F +I  AYEVL
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 55

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 19 HRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFR 77
          H      +          S ++   +  ++E K    RL   +HPDKN  + + A + F+
Sbjct: 2  HHHHHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFK 61

Query: 78 EITAAYEVL 86
           +      L
Sbjct: 62 HLQNEINRL 70

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 66.1 bits (162), Expect = 2e-16
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAA-KKFREITAAYEVL 86
           S   V+YY  L V  +A+   IK +Y +L+  +HPDKN  ++  A ++F+++  AYEVL
Sbjct: 4  GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 67.9 bits (166), Expect = 2e-16
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG------SEAAAKKFREITAAYE 84
           K ++YS L     A  +++K  Y +L  +YHPDK          E   +KF EI  A++
Sbjct: 8  PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67

Query: 85 VLG 87
          +LG
Sbjct: 68 ILG 70

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 65.9 bits (161), Expect = 3e-16
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          S    + Y  L V   A+Q +IK +Y +L++ +HPDKNK    A  +F +I+ AYE+L
Sbjct: 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEIL 69

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 65.8 bits (161), Expect = 5e-16
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
           +YY  L V   A+ ++IK +Y R +  +HPDKN  + E A KKF+E+  AYEVL
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 64.9 bits (159), Expect = 7e-16
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          YY  L +   A+  EIK +Y R +  YHPDKNK    A +KF+EI  AY+VL
Sbjct: 5  YYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVL 55

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 64.6 bits (158), Expect = 1e-15
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +  +YY  L V   A+  ++K +Y RL+  +HPDKN    A    F+ I  AY VL
Sbjct: 5  SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE-AFKAIGTAYAVL 59

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 69.0 bits (168), Expect = 1e-15
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 17 KYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKF 76
           +H   +S     +   N+YS L V   A+  EI+ ++ +L+   HPDKN  +  A   F
Sbjct: 5  HHHHHHSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDF 64

Query: 77 REITAAYEVLGEF 89
           +I  AYEVL + 
Sbjct: 65 LKINRAYEVLKDE 77

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 64.3 bits (157), Expect = 2e-15
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
           +   Y  L V   A + E+K  Y + +  YHPDK  G     +KF+EI+ A+E+L
Sbjct: 6  KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEIL 58

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 63.2 bits (154), Expect = 3e-15
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +   + +  L V   A+++E+  +Y +L+ L HPDK   +  +   F+ +  A   L
Sbjct: 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTAL 79

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 63.1 bits (154), Expect = 4e-15
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +  +YY  L V   A++ +IK ++++L+  YHPDKNK  +A A KFREI  AYE L
Sbjct: 5  SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA-KFREIAEAYETL 59

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 62.3 bits (152), Expect = 6e-15
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
           +  YY  L V  +A+ NE+K +Y +++  +HPDKN      A++F++I+ AYEVL
Sbjct: 6  KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVL 58

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 62.4 bits (152), Expect = 8e-15
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG------SEAAAKKFREITAAYE 84
           K ++YS L     A  +++K  Y +L  LYHPDK          E   +KF EI  A++
Sbjct: 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

Query: 85 VLG 87
          +LG
Sbjct: 74 ILG 76

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 62.0 bits (151), Expect = 2e-14
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 31 AKVNYYSHLQVGSEA-TQNEIKASYYRLSKLYHPDKNKG---SEAAAKKFREITAAYEVL 86
             N Y  L+V  E   + ++  +Y  L++ +HPD+ K       A ++FR I  AYE L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 57.6 bits (139), Expect = 4e-12
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 32 KVNYYSHLQVGSEATQN--EIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
           +     L +   A  N   ++ +Y +  K +HPDK    E    K +++   Y+ + +
Sbjct: 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMED 64

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 56.0 bits (135), Expect = 5e-12
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 32 KVNYYSHLQVGSEATQN--EIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
           +     L +   A  N   ++ +Y +  K +HPDK    E    K +++   Y+ + +
Sbjct: 7  SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMED 61

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 49.6 bits (118), Expect = 4e-09
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 33 VNYYS--HLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEV 85
          ++Y++   L    +     +   +  L + YHPDK          AA ++   I  A++ 
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 86 L 86
          L
Sbjct: 61 L 61

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 48.7 bits (115), Expect = 9e-09
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 36  YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA---AAKKFREITAAYEVL 86
           +  + +    T  ++K  Y +   + HPDK  G      A   F E+  A+   
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 173

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 16  VKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AA 72
           ++        L     K +YY  L V   A + EI  +Y +L+  +HPD  +  E    A
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424

Query: 73  AKKFREITAAYEVLG 87
            KKF +I AA EVL 
Sbjct: 425 EKKFIDIAAAKEVLS 439

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 44.9 bits (106), Expect = 4e-08
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 35 YYSHLQVGSEATQN--EIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
              L++  +   +   ++ +Y + S L HPDK  GS A     +E+ + +     
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHA---LMQELNSLWGTFKT 64

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 46.1 bits (109), Expect = 9e-08
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 23 TSALYSSQAKVNYYSHLQVGSEAT-------QNEIKASYYRLSKLYHPDKNKGSEAAAKK 75
          ++AL   +    +Y                 Q+ ++  Y +L   +HPD  +       +
Sbjct: 1  SNALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSE---Q 57

Query: 76 FREITAAYEVL 86
             +  AY  L
Sbjct: 58 SSTLNQAYHTL 68

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA---AAKKFREITAAYEVL 86
          +  + +    T  ++K  Y +   + HP K  G      A   F E+  A+   
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 42.7 bits (101), Expect = 3e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 43 SEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
          +  T+ ++K  + ++    HPDK  GS   A K   I  A + L
Sbjct: 25 NTLTKKKLKEVHRKIMLANHPDKG-GSPFLATK---INEAKDFL 64

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 43.1 bits (101), Expect = 4e-07
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 13  WAVVKYH--RFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE 70
           W+  K    R   S L       + +  + +      N ++ SY R   + HPDK +   
Sbjct: 18  WSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKG 77

Query: 71  A-------AAKKFREITAAYEVLGE 88
           A       A K F  +  A++    
Sbjct: 78  ASANQKYMAEKVFELLQEAWDHFNT 102

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 31  AKVNYYS--HLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAY 83
              +Y+S             +++  Y +L +L HPD          + + K    +  AY
Sbjct: 41  PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100

Query: 84  EVL 86
           + L
Sbjct: 101 KTL 103

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.3 bits (80), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 9/38 (23%)

Query: 47 QNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYE 84
          +  +K     L KLY  D    + A A     I A  E
Sbjct: 19 KQALKKLQASL-KLYADDS---APALA-----IKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.86
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.85
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.84
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.84
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.83
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.83
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.81
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.8
2guz_A	71	Mitochondrial import inner membrane translocase su	99.8
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.8
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.79
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.79
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.76
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.75
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.74
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.74
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.73
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.71
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.7
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.7
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.69
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.62
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.62
2guz_B	65	Mitochondrial import inner membrane translocase su	99.4
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.91

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=6.3e-22  Score=114.47  Aligned_cols=60  Identities=47%  Similarity=0.767  Sum_probs=56.4

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d   62 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD   62 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            456789999999999999999999999999999999998767789999999999999997

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=114.02  Aligned_cols=60  Identities=43%  Similarity=0.674  Sum_probs=56.1

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      +....|+|+||||+++++.++||++||++++++|||++++ +.+.+.|+.|++||++|+|.
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~   62 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDA   62 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCH
Confidence            4567899999999999999999999999999999999986 78999999999999999984

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=111.51  Aligned_cols=59  Identities=37%  Similarity=0.649  Sum_probs=55.6

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||+++++.++||++|+++++++|||+++. +.+.+.|+.|++||++|+|
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d   61 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSN   61 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCC
Confidence            4567899999999999999999999999999999999986 7789999999999999997

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=116.61  Aligned_cols=61  Identities=51%  Similarity=0.775  Sum_probs=57.5

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ......++|+||||+++++.++||++||++++++|||++++++.+.+.|+.|++||++|+|
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d   72 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS   72 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            5677889999999999999999999999999999999998777899999999999999997

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=114.90  Aligned_cols=57  Identities=25%  Similarity=0.423  Sum_probs=53.4

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...|+|+||||+++++.++||++||++++++|||++++ +.+.+.|+.|++||++|+|
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d   81 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLK   81 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCC
Confidence            45899999999999999999999999999999999976 6688999999999999986

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.84  E-value=4.6e-21  Score=110.38  Aligned_cols=56  Identities=45%  Similarity=0.748  Sum_probs=52.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      +.|+|+||||+++++.++||++|+++++++|||++++ +.+.+.|+.|++||++|+|
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d   57 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSD   57 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCC
Confidence            4799999999999999999999999999999999986 5688999999999999997

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=110.06  Aligned_cols=61  Identities=39%  Similarity=0.705  Sum_probs=55.6

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .....|+|+||||+++++.++||++||++++++|||++++. +.+.+.|+.|++||++|+|.
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~   66 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA   66 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence            44568999999999999999999999999999999999875 46889999999999999984

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=9.6e-21  Score=115.72  Aligned_cols=61  Identities=39%  Similarity=0.586  Sum_probs=57.2

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ......++|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d   72 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD   72 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence            3556789999999999999999999999999999999998778899999999999999997

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.83  E-value=2.6e-21  Score=114.50  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ......++|+||||+++++.++||++||++++++|||+++++ +.+++.|+.|++||++|+|
T Consensus        11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~   72 (88)
T 1iur_A           11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            455678999999999999999999999999999999999876 4689999999999999986

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=8.5e-21  Score=116.40  Aligned_cols=60  Identities=25%  Similarity=0.392  Sum_probs=56.2

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||+++++.++||++||++++++|||++++++.+.+.|+.|++||++|+|
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d   75 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN   75 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            355689999999999999999999999999999999998767899999999999999997

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=1.4e-20  Score=111.00  Aligned_cols=59  Identities=39%  Similarity=0.649  Sum_probs=54.8

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||+++++.++||++||++++++|||++++ +.+.+.|+.|++||++|+|
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d   71 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSN   71 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHS
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCC
Confidence            3456899999999999999999999999999999999986 6689999999999999997

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.83  E-value=1.1e-20  Score=112.33  Aligned_cols=62  Identities=35%  Similarity=0.605  Sum_probs=55.9

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc------HHHHHHHHHHHHHHHHhhCC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ......|+|+||||+++++.++||++||++++++|||+++..      +.+.+.|+.|++||++|+|.
T Consensus        11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~   78 (94)
T 1wjz_A           11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE   78 (94)
T ss_dssp             SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence            345678999999999999999999999999999999998742      56899999999999999984

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=110.79  Aligned_cols=60  Identities=43%  Similarity=0.715  Sum_probs=55.2

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||+++++.++||++||++++++|||++++. +.+++.|+.|++||++|+|
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d   65 (92)
T 2dmx_A            5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD   65 (92)
T ss_dssp             CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence            44568999999999999999999999999999999998764 5789999999999999997

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.81  E-value=3.8e-20  Score=105.63  Aligned_cols=55  Identities=40%  Similarity=0.772  Sum_probs=51.3

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...++|+||||+++++.++||++|+++++++|||++++.   .+.|+.|++||++|+|
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d   60 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSD   60 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCC
Confidence            457999999999999999999999999999999999863   6899999999999997

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=5.5e-20  Score=110.77  Aligned_cols=56  Identities=45%  Similarity=0.744  Sum_probs=52.7

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|+|+||||+++++.++||++||++++++|||++++. +.+.+.|+.|++||++|+|
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d   58 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD   58 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence            5899999999999999999999999999999998864 5689999999999999997

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.80  E-value=1.7e-20  Score=108.94  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=51.0

Q ss_pred             CcccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....++|+||||+++  ++.++||++||++++++|||++++    .+.|++|++||++|+|
T Consensus         8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~   64 (79)
T 1faf_A            8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT   64 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhh
Confidence            345789999999999  999999999999999999999876    6899999999999986

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4e-20  Score=105.33  Aligned_cols=58  Identities=17%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             cccCcccChhhhhccCC-CCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          27 YSSQAKVNYYSHLQVGS-EATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        27 ~~~~~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....+..++|+||||++ +++.++||++||++++++|||++++    .+.|+.|++||++|+|
T Consensus         8 ~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~   66 (71)
T 2guz_A            8 DPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEK   66 (71)
T ss_dssp             CSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhh
Confidence            34556689999999999 7999999999999999999999765    5799999999999986

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.80  E-value=1e-20  Score=114.47  Aligned_cols=58  Identities=47%  Similarity=0.785  Sum_probs=54.2

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|+|+||||+++++.++||++||++++++|||++++.+.+++.|+.|++||++|+|.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~   59 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS   59 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence            4789999999999999999999999999999999986667899999999999999973

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.80  E-value=8.7e-20  Score=111.24  Aligned_cols=59  Identities=32%  Similarity=0.516  Sum_probs=54.8

Q ss_pred             CcccChhhhhccCCCC-CHHHHHHHHHHHHHhhCCCCCCC---cHHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGSEA-TQNEIKASYYRLSKLYHPDKNKG---SEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....|+|+||||++++ +.++||++||++++++|||++++   .+.+.+.|+.|++||++|+|
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d   74 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD   74 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCC
Confidence            4568999999999999 99999999999999999999986   36789999999999999997

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.1e-19  Score=107.91  Aligned_cols=55  Identities=36%  Similarity=0.700  Sum_probs=51.1

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...|+|+||||+++++.++||++||++++++|||+++++   .+.|+.|++||++|+|
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d   60 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND   60 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTS
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCC
Confidence            457999999999999999999999999999999999763   5699999999999997

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.79  E-value=1.5e-20  Score=112.08  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=51.7

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d   88 (89)
                      .++|++|||+++++.++||++||++++++|||++++++   .+++.|+.|++||++|++
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999987643   488999999999999975

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=2.9e-19  Score=117.92  Aligned_cols=56  Identities=39%  Similarity=0.616  Sum_probs=53.6

Q ss_pred             cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|+|+||||+++++.++||++||++++++|||++++.+++.+.|+.|++||++|+|
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~   57 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD   57 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999999999999998777899999999999999997

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=111.98  Aligned_cols=60  Identities=35%  Similarity=0.633  Sum_probs=54.4

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc------HHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....|+|+||||+++++.++||++||++++++|||++++.      +.+.+.|+.|++||++|+|
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~d   71 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN   71 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence            45568999999999999999999999999999999998764      2478999999999999997

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.75  E-value=2.4e-19  Score=109.28  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=51.0

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC---c----HHHHHHHHHHHHHHHHhhCC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG---S----EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~----~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ...+||+|||++. ++.++||++||++++++||||+++   +    ..++++|+.|++||++|+|.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~  103 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL  103 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCc
Confidence            3479999999996 999999999999999999999753   1    24789999999999999983

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.74  E-value=2.9e-19  Score=110.14  Aligned_cols=54  Identities=19%  Similarity=0.398  Sum_probs=50.5

Q ss_pred             cccChhhhhccCCCCCH--HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQ--NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...++|+||||+++++.  ++||++||++++++|||++++    .+.|+.|++||++|+|
T Consensus         6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d   61 (114)
T 1gh6_A            6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED   61 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHH
T ss_pred             hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCC
Confidence            45789999999999998  999999999999999999886    6899999999999986

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.73  E-value=1.4e-18  Score=114.51  Aligned_cols=57  Identities=21%  Similarity=0.334  Sum_probs=52.4

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d   88 (89)
                      +.++|++|||+++++.++||++||++++++|||++++.+   .+++.|+.|++||++|+|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD  175 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN  175 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence            369999999999999999999999999999999987643   288999999999999987

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.71  E-value=9.5e-18  Score=109.52  Aligned_cols=57  Identities=21%  Similarity=0.415  Sum_probs=51.2

Q ss_pred             cChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538          33 VNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        33 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .|||+||||++++  +.++||++||++++++|||++++.+     .+.+.|+.|++||++|+|.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp   64 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHP   64 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            3799999999998  9999999999999999999987642     3678999999999999983

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.70  E-value=8e-19  Score=124.39  Aligned_cols=61  Identities=34%  Similarity=0.592  Sum_probs=0.0

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      +.+...|||+||||+++++.++||+|||++++++|||++++ +.++++|++|++||++|+|.
T Consensus        23 ~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~   83 (329)
T 3lz8_A           23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDE   83 (329)
T ss_dssp             --------------------------------------------------------------
T ss_pred             ccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhh
Confidence            34556899999999999999999999999999999999986 57899999999999999983

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.70  E-value=2.4e-17  Score=110.51  Aligned_cols=60  Identities=20%  Similarity=0.342  Sum_probs=52.6

Q ss_pred             CcccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhCC
Q psy3538          30 QAKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ....|||+||||+++  ++.++||++||++++++|||++++.     ..+.+.|+.|++||++|+|.
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp  106 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP  106 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            346899999999986  7899999999999999999998753     23678999999999999983

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.69  E-value=1.9e-18  Score=113.21  Aligned_cols=55  Identities=18%  Similarity=0.396  Sum_probs=47.9

Q ss_pred             CcccChhhhhccCCCCC--HHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          30 QAKVNYYSHLQVGSEAT--QNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        30 ~~~~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ....++|+||||+++++  .++||+|||++++++|||++++    ++.|+.|++||++|+|
T Consensus         8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsd   64 (174)
T 2pf4_E            8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED   64 (174)
T ss_dssp             HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHH
T ss_pred             cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCC
Confidence            34579999999999998  6999999999999999999886    5899999999999997

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.62  E-value=1.6e-16  Score=104.53  Aligned_cols=59  Identities=17%  Similarity=0.349  Sum_probs=51.8

Q ss_pred             ccCcccChhhhh------ccCC-CCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          28 SSQAKVNYYSHL------QVGS-EATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        28 ~~~~~~~~y~iL------gv~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      +.....|||+||      |+++ +++.++||++||++++++|||++++   +.+.|+.|++||++|+|.
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp   71 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDP   71 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcCh
Confidence            345668999999      4665 8999999999999999999999986   678999999999999983

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.62  E-value=5.5e-17  Score=123.51  Aligned_cols=61  Identities=36%  Similarity=0.575  Sum_probs=30.6

Q ss_pred             ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ......|+|+||||+++++.++||++||++++++|||++++++.+.+.|+.|++||++|+|
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~   76 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD   76 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHS
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcC
Confidence            4566789999999999999999999999999999999998778899999999999999997

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.40  E-value=3.1e-13  Score=75.61  Aligned_cols=52  Identities=13%  Similarity=0.080  Sum_probs=46.3

Q ss_pred             ccChhhhhccCCC---CCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538          32 KVNYYSHLQVGSE---ATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG   87 (89)
Q Consensus        32 ~~~~y~iLgv~~~---a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~   87 (89)
                      ..++|.||||+++   ++.++|+++||+|...+|||++++    ......|++|.+.|.
T Consensus         3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHH
Confidence            4578999999999   999999999999999999999886    677778899998874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.96  E-value=6.1e-10  Score=77.52  Aligned_cols=58  Identities=40%  Similarity=0.579  Sum_probs=52.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---HHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..++|.+||+...++.++|+++|+++++++|||+.+++   +.+++.|+.|.+||++|+|.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~  441 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP  441 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence            34899999999999999999999999999999998874   35899999999999999984

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.91  E-value=0.039  Score=41.42  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=36.1

Q ss_pred             cccChhhhhccCCCCCH--HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHH
Q psy3538          31 AKVNYYSHLQVGSEATQ--NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEV   85 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~   85 (89)
                      ...++|.+||++.+...  .+|+++||++++..+++        .+++..+..|+.+
T Consensus       627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            34559999999766554  67999999999966553        4778888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	89
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-10
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-09
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-08
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	4e-07
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	9e-07
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	3e-06
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	7e-06

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (120), Expect = 1e-10
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEV 85
          AK +YY  L V   A + EI+ +Y RL+  YHPD+N+G + A  KF+EI  AYEV
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 55

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.6 bits (113), Expect = 2e-09
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVL 86
            +  + +    T  ++K  Y +   + HPDK  G    + A   F E+  A+   
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (106), Expect = 2e-08
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKK------FREITAAYEV 85
          K ++YS L     A  +++K  Y +L  LYHPDK      A         F EI  A+++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 86 LG 87
          LG
Sbjct: 75 LG 76

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 4e-07
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          +YY  L +   A+  EIK +Y R +  YHPDKNK    A +KF+EI  AY+VL 
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLS 56

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (94), Expect = 9e-07
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 34 NYYSHLQV--GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAK-----KFREITAAYEVL 86
          +Y++   +    +     +   +  L + YHPDK      A +     +   I  A++ L
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
             S ++   +  ++E K    RL   +HPDKN  + + A + F+ +      L
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 38.1 bits (88), Expect = 7e-06
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 28 SSQAKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEV 85
          S   K      L++  +       ++ +Y + S L HPDK      +    +E+ + +  
Sbjct: 6  SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----SHALMQELNSLWGT 61

Query: 86 L 86
           
Sbjct: 62 F 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.88
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.82
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.81
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.8
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.8
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.74
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.71

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.3e-23  Score=117.13  Aligned_cols=58  Identities=47%  Similarity=0.785  Sum_probs=54.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      ..|+|+||||++++|.++||++||++++++|||++++++.+++.|+.|++||++|+|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~   59 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS   59 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCH
Confidence            4799999999999999999999999999999999987778899999999999999984

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5.6e-21  Score=112.84  Aligned_cols=61  Identities=36%  Similarity=0.614  Sum_probs=54.7

Q ss_pred             cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc------HHHHHHHHHHHHHHHHhhCC
Q psy3538          29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      .....|||+||||+++++.++||++|+++++++|||+++..      +.+++.|+.|++||++|+|.
T Consensus        12 ~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~   78 (94)
T d1wjza_          12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE   78 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             hhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            34457999999999999999999999999999999998653      56889999999999999983

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.2e-21  Score=108.34  Aligned_cols=56  Identities=45%  Similarity=0.748  Sum_probs=52.8

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      +.|+|+||||+++++.++|+++|+++++++|||++++ +++.+.|+.|++||++|+|
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-~~~~~~~~~i~~Ay~vLsd   57 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSD   57 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999886 6688999999999999997

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.81  E-value=1.5e-21  Score=118.70  Aligned_cols=54  Identities=19%  Similarity=0.417  Sum_probs=49.8

Q ss_pred             cccChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      ...++|+||||+++|  +.++||+|||++++++|||++++    .++|+.|++||++|+|
T Consensus         6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd   61 (114)
T d1gh6a_           6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED   61 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCC
Confidence            357899999999998  78899999999999999999987    5789999999999986

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.80  E-value=8.9e-21  Score=108.83  Aligned_cols=56  Identities=18%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             cCcccChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538          29 SQAKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        29 ~~~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .....++|+||||++++  +.++||++||++++++|||++++    .+.|++|++||++|+|
T Consensus         7 ~~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d   64 (79)
T d1fafa_           7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT   64 (79)
T ss_dssp             HHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCC
Confidence            34568999999999987  89999999999999999999876    5789999999999986

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-20  Score=109.20  Aligned_cols=58  Identities=22%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538          31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .-.++|+||||+++++.++||++||+++++||||+++++ +.+.+.|+.|++||++|++
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~   72 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            347999999999999999999999999999999999875 5689999999999999974

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.5e-18  Score=98.51  Aligned_cols=56  Identities=21%  Similarity=0.433  Sum_probs=49.0

Q ss_pred             cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhC
Q psy3538          33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGE   88 (89)
Q Consensus        33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d   88 (89)
                      .|||++|||+++  ++.++||++|+++++++|||+..+.     +.+.+.|..|++||++|+|
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~d   63 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH   63 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            379999999985  5589999999999999999996543     3478899999999999998

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=2.2e-18  Score=102.27  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=52.3

Q ss_pred             ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---HHHHHHHHHHHHHHHHhhCC
Q psy3538          32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVLGEF   89 (89)
Q Consensus        32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~   89 (89)
                      +.+.|.+||++..++.++||++||++++.+|||++++.   ..+++.|+.|++||++|+|.
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~   92 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ   92 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCH
Confidence            45789999999999999999999999999999997654   45889999999999999983