Psyllid ID: psy3554

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670--
MHRNACTQTNEAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNHNMPRERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHWRGASRSPKSRDSSTLMKDIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKGLPPPMGSI
ccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccHHHHHHHHHcccccEEHHccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEccccccccHHHHHHcccccccEEEEEEEEEEEEEEccccEEEcccccccccccccc
ccccccccccccccccccEEEEcccEcccEEccccccccccccccccccEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEcccccHHEcccccHHHHHEEEEHHccccEEEEEEcccccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEccccccccHHHHHHHcccccccEEEEEEEEEEEEEEccccEEEEEcccccccccccc
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
MHRNACTQTNEAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNHNMPRERTLEFNNVIRSLQGKNIvravaakdvrraQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVIssghqhllshsssvvlalqsKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALqqqqqqKTMMLYEDQNMSDTALqqqqqqKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKifavlifffiffvvflaHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHWRGASRSPKSRDSSTLMKDIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKGLPPPMGSI
**********EAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLK***********TLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQV*********************VVLAL*************************************************************************************************************************NIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHWRG************LMKDIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKG********
**********************************************************HNMPRERTLEFN***********************************************************************ELTYIIKEDLNSLN*********************************ALQ*********************************************************************************************************************************GGIFQQLAHMVQEQEEMVERIDANI**********************QAHGDQNTWISTKTQACEDTVR*****************ANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVIS*******************DIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKGLPPP****
MHRNACTQTNEAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNHNMPRERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAK***********************SSVVLALQSKLASMSTEFKNVLEVRTENLKQ*************PSSLPPAAMSGPHHQGSVLLADEQCAIDMSD*********KTMMLYEDQN****************LYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHW**************LMKDIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKGLPPPMGSI
*****CTQT*EAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNHNMPRERTLEFNNVIRSLQGK********************GEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQR*************SSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRR******************************************************************QQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHWRG**********STLMKDIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKGLPP*****
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MHRNACTQTNEAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNHNMPRERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNKSFLSARCTGYEGLLLQLTAHYSKSRVYASIGEGLPGVAGLQCEVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHWRGASRSPKSRDSSTLMKDIRCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPALRYFIFLPTSPKKKSLIWHFMHRKKPPTVYHYFLRIKYRVVLGTGSCIVGIGLKGLPPPMGSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query672 2.2.26 [Sep-21-2011]
Q24509467 Syntaxin-5 OS=Drosophila yes N/A 0.400 0.576 0.587 8e-87
Q08DB5355 Syntaxin-5 OS=Bos taurus yes N/A 0.377 0.715 0.513 3e-66
Q13190355 Syntaxin-5 OS=Homo sapien yes N/A 0.377 0.715 0.509 1e-65
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes N/A 0.386 0.732 0.486 1e-63
Q08851355 Syntaxin-5 OS=Rattus norv yes N/A 0.418 0.791 0.470 1e-62
Q20797413 Putative syntaxin-3 OS=Ca yes N/A 0.392 0.639 0.375 5e-40
O13644309 Integral membrane protein yes N/A 0.394 0.857 0.378 2e-38
Q9LK09347 Syntaxin-32 OS=Arabidopsi yes N/A 0.427 0.827 0.350 5e-28
Q01590340 Integral membrane protein yes N/A 0.352 0.697 0.330 7e-24
Q9FFK1336 Syntaxin-31 OS=Arabidopsi no N/A 0.422 0.845 0.285 2e-20
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 219/296 (73%), Gaps = 27/296 (9%)

Query: 63  RERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEK 122
           R+RT EF N IRSLQ +NI RAV  +D R+A+ VQ+Y EFM++A+ IGKNI+STYAKLEK
Sbjct: 161 RDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFMMVARFIGKNIASTYAKLEK 220

Query: 123 LTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSH 182
           LT+LAK+KSLF+D+P EIQELTYIIK DLN+LNQQIA+LQ + K QR    +  +HL+SH
Sbjct: 221 LTMLAKKKSLFDDRPQEIQELTYIIKGDLNALNQQIARLQDISKDQRR--HTNGKHLVSH 278

Query: 183 SSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQ 242
           SS++VLALQSKLASMST+FK +LEVRTENLKQ K+RRDQ+S G  P +    + S    Q
Sbjct: 279 SSNMVLALQSKLASMSTDFKQILEVRTENLKQQKTRRDQFSQGPGPLAAHTVSPS-TAKQ 337

Query: 243 GSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTA--LQQQQQQKTMMLYEDQSE 300
           GS+LL++E  A+ +                  D   SDT   L  Q Q   M +Y+D S+
Sbjct: 338 GSLLLSEENQAVSI------------------DMGSSDTTPLLSTQTQ---MAIYDD-SD 375

Query: 301 QFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAH 356
            ++Q RA+TMQNIESTIVELGGIFQQLAHMV+EQEE+VERID N+ D EL++E+AH
Sbjct: 376 NYVQQRAETMQNIESTIVELGGIFQQLAHMVKEQEEIVERIDTNVADAELNIEAAH 431
Mediates endoplasmic reticulum to Golgi transport.
Drosophila melanogaster (taxid: 7227)
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query672
350537051314 uncharacterized protein LOC100159702 [Ac 0.412 0.882 0.606 1e-93
170033216427 syntaxin-5 [Culex quinquefasciatus] gi|1 0.412 0.648 0.611 1e-87
195114612468 GI17075 [Drosophila mojavensis] gi|19391 0.409 0.587 0.601 4e-86
467559310 SED5 [Drosophila melanogaster] 0.400 0.867 0.587 3e-85
195343138467 GM18666 [Drosophila sechellia] gi|194133 0.400 0.576 0.587 4e-85
195475372469 GE21453 [Drosophila yakuba] gi|194176059 0.400 0.573 0.587 5e-85
24584581467 syntaxin 5, isoform A [Drosophila melano 0.400 0.576 0.587 5e-85
194857817470 GG25202 [Drosophila erecta] gi|190660906 0.400 0.572 0.587 6e-85
195579547475 GD24051 [Drosophila simulans] gi|1941916 0.400 0.566 0.587 7e-85
194759844467 GF14580 [Drosophila ananassae] gi|190615 0.397 0.571 0.595 7e-85
>gi|350537051|ref|NP_001233086.1| uncharacterized protein LOC100159702 [Acyrthosiphon pisum] gi|239791452|dbj|BAH72190.1| ACYPI001052 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 229/297 (77%), Gaps = 20/297 (6%)

Query: 61  MPRERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKL 120
           MPR+RT EFN+ +RSLQG+ I RAV  +DV++ + +Q+YGEFM+IAK++G NIS+TYAKL
Sbjct: 1   MPRDRTAEFNSAVRSLQGRQIARAVQVRDVKKVKALQSYGEFMMIAKSVGFNISNTYAKL 60

Query: 121 EKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISS-GHQHL 179
           EKLTLLAKRKSLFND+P EIQELTYIIKEDLNSLNQQIAKLQ V K Q+   ++ G +HL
Sbjct: 61  EKLTLLAKRKSLFNDRPQEIQELTYIIKEDLNSLNQQIAKLQDVAKLQKAAQNNVGRKHL 120

Query: 180 LSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGP 239
           LSH SSVVL+LQSKLA++S EFK VLE+RT+NLK AK+RRDQ+S G   ++L  ++   P
Sbjct: 121 LSHESSVVLSLQSKLANISNEFKLVLEIRTKNLKHAKTRRDQFSQGNNLAALSDSSSLVP 180

Query: 240 HHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQS 299
            H  S+L++  QCAI+M + A Q + QQ T                 QQ + + +Y D +
Sbjct: 181 RH-NSLLMSSNQCAINMDNNADQDRLQQVT-----------------QQTQALAVY-DNT 221

Query: 300 EQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAH 356
           +Q++ SRA+TMQNIESTIVELGGIFQQLAHMV+EQEEMVERID+N+ D EL +E+AH
Sbjct: 222 DQYLYSRAETMQNIESTIVELGGIFQQLAHMVKEQEEMVERIDSNVQDAELSIEAAH 278

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170033216|ref|XP_001844474.1| syntaxin-5 [Culex quinquefasciatus] gi|167873881|gb|EDS37264.1| syntaxin-5 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195114612|ref|XP_002001861.1| GI17075 [Drosophila mojavensis] gi|193912436|gb|EDW11303.1| GI17075 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|467559|emb|CAA55064.1| SED5 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195343138|ref|XP_002038155.1| GM18666 [Drosophila sechellia] gi|194133005|gb|EDW54573.1| GM18666 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195475372|ref|XP_002089958.1| GE21453 [Drosophila yakuba] gi|194176059|gb|EDW89670.1| GE21453 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|24584581|ref|NP_599132.2| syntaxin 5, isoform A [Drosophila melanogaster] gi|28574214|ref|NP_523582.4| syntaxin 5, isoform B [Drosophila melanogaster] gi|62511147|sp|Q24509.2|STX5_DROME RecName: Full=Syntaxin-5; AltName: Full=Sed5 protein; AltName: Full=dSed5 gi|17863000|gb|AAL39977.1| SD07852p [Drosophila melanogaster] gi|22946613|gb|AAF53520.2| syntaxin 5, isoform A [Drosophila melanogaster] gi|22946614|gb|AAN10935.1| syntaxin 5, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194857817|ref|XP_001969039.1| GG25202 [Drosophila erecta] gi|190660906|gb|EDV58098.1| GG25202 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195579547|ref|XP_002079623.1| GD24051 [Drosophila simulans] gi|194191632|gb|EDX05208.1| GD24051 [Drosophila simulans] Back     alignment and taxonomy information
>gi|194759844|ref|XP_001962157.1| GF14580 [Drosophila ananassae] gi|190615854|gb|EDV31378.1| GF14580 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query672
FB|FBgn0011708467 Syx5 "Syntaxin 5" [Drosophila 0.315 0.453 0.504 1.8e-70
UNIPROTKB|F8W8Q9321 STX5 "Syntaxin-5" [Homo sapien 0.294 0.616 0.456 9.2e-50
ZFIN|ZDB-GENE-040718-18302 stx5a "syntaxin 5A" [Danio rer 0.364 0.811 0.370 3e-49
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.373 0.707 0.371 4.6e-48
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.382 0.723 0.373 6.1e-48
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.364 0.690 0.376 8e-48
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.364 0.690 0.376 1.1e-47
MGI|MGI:1928483355 Stx5a "syntaxin 5A" [Mus muscu 0.369 0.698 0.376 8.8e-47
ZFIN|ZDB-GENE-030131-1825347 stx5al "syntaxin 5A, like" [Da 0.380 0.737 0.370 1.8e-46
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.369 0.698 0.376 3.3e-46
FB|FBgn0011708 Syx5 "Syntaxin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 482 (174.7 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 110/218 (50%), Positives = 139/218 (63%)

Query:    63 RERTLEFNNVIRSLQGKNIXXXXXXXXXXXXQFVQNYGEFMLIAKTIGKNISSTYAKLEK 122
             R+RT EF N IRSLQ +NI            + VQ+Y EFM++A+ IGKNI+STYAKLEK
Sbjct:   161 RDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFMMVARFIGKNIASTYAKLEK 220

Query:   123 LTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVIXXXXXXXXXX 182
             LT+LAK+KSLF+D+P EIQELTYIIK DLN+LNQQIA+LQ + K QR             
Sbjct:   221 LTMLAKKKSLFDDRPQEIQELTYIIKGDLNALNQQIARLQDISKDQRR--HTNGKHLVSH 278

Query:   183 XXXXXXXXXXKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQ 242
                       KLASMST+FK +LEVRTENLKQ K+RRDQ+S G  P +    + S    Q
Sbjct:   279 SSNMVLALQSKLASMSTDFKQILEVRTENLKQQKTRRDQFSQGPGPLAAHTVSPSTAK-Q 337

Query:   243 GSVLLADEQCA--IDMSDTALXXXXXXKTMM-LYEDQN 277
             GS+LL++E  A  IDM  +        +T M +Y+D +
Sbjct:   338 GSLLLSEENQAVSIDMGSSDTTPLLSTQTQMAIYDDSD 375
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0005801 "cis-Golgi network" evidence=IDA
GO:0007269 "neurotransmitter secretion" evidence=ISS;NAS
GO:0016192 "vesicle-mediated transport" evidence=ISS;NAS
GO:0005886 "plasma membrane" evidence=ISS
GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS
GO:0005484 "SNAP receptor activity" evidence=ISS
GO:0000910 "cytokinesis" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=ISS
GO:0000139 "Golgi membrane" evidence=ISS
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0009306 "protein secretion" evidence=IMP
GO:0006878 "cellular copper ion homeostasis" evidence=IMP
GO:0008283 "cell proliferation" evidence=IMP
GO:0060305 "regulation of cell diameter" evidence=IMP
GO:0007030 "Golgi organization" evidence=IMP
GO:0045930 "negative regulation of mitotic cell cycle" evidence=IMP
UNIPROTKB|F8W8Q9 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-18 stx5a "syntaxin 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1928483 Stx5a "syntaxin 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1825 stx5al "syntaxin 5A, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q08DB5STX5_BOVINNo assigned EC number0.51320.37790.7154yesN/A
Q13190STX5_HUMANNo assigned EC number0.50990.37790.7154yesN/A
Q24509STX5_DROMENo assigned EC number0.58780.40020.5760yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query672
pfam0573962 pfam05739, SNARE, SNARE domain 4e-13
pfam00804103 pfam00804, Syntaxin, Syntaxin 3e-12
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 1e-11
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 2e-11
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 5e-09
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 3e-06
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 19/52 (36%), Positives = 35/52 (67%)

Query: 306 RADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHR 357
           R + ++ +ES+I EL  +F  +   V+EQ E+++RID N+ +T+  VE A++
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANK 52

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 672
KOG0812|consensus311 100.0
KOG0809|consensus305 100.0
KOG0810|consensus297 99.92
KOG0811|consensus269 99.85
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.84
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.7
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.28
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.27
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.21
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 98.91
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 98.4
KOG3894|consensus316 98.36
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 98.35
KOG3202|consensus235 97.91
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 96.44
PF1141629 Sed5p: Integral membrane protein Sed5p; InterPro: 93.48
PF1049687 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N 92.73
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 92.69
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 91.1
KOG3385|consensus118 91.05
KOG0811|consensus269 90.19
KOG0810|consensus297 89.68
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 87.85
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 87.6
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 84.37
>KOG0812|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-68  Score=543.14  Aligned_cols=305  Identities=51%  Similarity=0.748  Sum_probs=246.2

Q ss_pred             cc-chhHHHHHHHHHHhcccccccccccchhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHH
Q psy3554          61 MP-RERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTE  139 (672)
Q Consensus        61 Ms-RDRT~EF~S~v~s~q~r~~~~~~s~~~~~~a~~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~E  139 (672)
                      |+ ||||.||++++++++.|+..+.+...++.+....+..+||.+.|+.|+++|++|.+||+||++||||+++|||+++|
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve   80 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE   80 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence            77 99999999999999988643222222233344567788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554         140 IQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRR  219 (672)
Q Consensus       140 IeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRr  219 (672)
                      |+|||++||++++.+|++|.+|+...+..+.   .++.+...|++|||..|+++|++++++||+|+|.|++++|+++.|+
T Consensus        81 I~eLT~iikqdi~sln~~i~~Lqei~~~~gn---~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~  157 (311)
T KOG0812|consen   81 IQELTFIIKQDITSLNSQIAQLQEIVKANGN---LSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRR  157 (311)
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHHHHhcc---ccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999854332   2225568899999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCCC-CCCC-CCCCC-CCccchhhhh-hcC-CcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhh
Q psy3554         220 DQYSGGGAPSSLPP-AAMS-GPHHQ-GSVLLADEQC-AID-MSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMML  294 (672)
Q Consensus       220 eqFs~~~~~~~lp~-sas~-~~~~~-~S~LldEe~e-sg~-vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL  294 (672)
                      ++|+.+.++.  |+ +.++ +.... .+.+.+...+ +.+ .+.+++                  ++...|| +  ||++
T Consensus       158 dkfs~~~a~~--~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~g------------------d~~~~qq-q--Qm~l  214 (311)
T KOG0812|consen  158 DKFSASYASL--NANPVSNSAARLHPLKLLVDPKDEASQDVESLNMG------------------DSSNPQQ-Q--QMAL  214 (311)
T ss_pred             HHhccccCCC--CCcccCcccccCCchhhhcCchhhccccccccccc------------------CCCCCHH-H--HHHH
Confidence            9999754332  11 1111 11111 2222222211 111 112211                  0011111 1  2666


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCcc
Q psy3554         295 YEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQN  374 (672)
Q Consensus       295 ~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~~~~~~~~~~  374 (672)
                      + ++.++|+|+|..++++||++|.|||+||+|||+||.||||+++|||+||+++..                        
T Consensus       215 l-~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~l------------------------  269 (311)
T KOG0812|consen  215 L-DESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDL------------------------  269 (311)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh------------------------
Confidence            6 556999999999999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccceeeeccCCCCCCccchhhcccccchhhhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q psy3554         375 TWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVF  454 (672)
Q Consensus       375 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~a~~ellky~~~vssnR~L~~Kif~vl~~f~~~fv~f  454 (672)
                                                              ||++||+||||||++||||||||+|||+||||||++||||
T Consensus       270 ----------------------------------------nI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf  309 (311)
T KOG0812|consen  270 ----------------------------------------NIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVLF  309 (311)
T ss_pred             ----------------------------------------hhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence                                                    9999999999999999999999999999999999999999


Q ss_pred             hc
Q psy3554         455 LA  456 (672)
Q Consensus       455 ~a  456 (672)
                      ++
T Consensus       310 ~~  311 (311)
T KOG0812|consen  310 LA  311 (311)
T ss_pred             cC
Confidence            85

>KOG0809|consensus Back     alignment and domain information
>KOG0810|consensus Back     alignment and domain information
>KOG0811|consensus Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG3894|consensus Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG3202|consensus Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery Back     alignment and domain information
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18 Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG3385|consensus Back     alignment and domain information
>KOG0811|consensus Back     alignment and domain information
>KOG0810|consensus Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query672
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 5e-04
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%)
Query: 306 RADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESA 355
           R   +Q +E+ I+++  IF+ LA M+ +Q ++++ I+AN+  +E+HVE A
Sbjct: 4   RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERA 53

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query672
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 6e-19
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 2e-18
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 2e-18
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 1e-17
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 3e-15
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 2e-14
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 4e-14
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 7e-14
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 1e-13
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 2e-10
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
 Score = 86.4 bits (213), Expect = 6e-19
 Identities = 33/267 (12%), Positives = 85/267 (31%), Gaps = 53/267 (19%)

Query: 101 EFMLIAKTIGKNISSTYAKLEKL-TLLAKRKSLFNDKPT-----EIQELTYIIKEDLNSL 154
           +F    K I  NI      +E++  L  +     + +       ++Q+    I    N +
Sbjct: 45  DFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKI 104

Query: 155 NQQIAKLQQVGKHQRDVISSGHQHLLSHS---SSVVLALQSKLASMSTEFKNVLEVRTEN 211
              + ++++  K  +   +     + +      S   +L  K   + T + +V       
Sbjct: 105 RADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRR 164

Query: 212 LKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMM 271
             +  +R+ +                                 D     ++   +     
Sbjct: 165 YGENVARQCRVVEPSLSD-------------------------DAIQKVIEHGTEG---- 195

Query: 272 LYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMV 331
                          + +       +     I+ R   +Q +E +++EL  +F  ++ +V
Sbjct: 196 ----------IFSGMRLEGA-----EAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLV 240

Query: 332 QEQEEMVERIDANILDTELHVESAHRD 358
             Q EM++RI+ ++  +  +V+ A   
Sbjct: 241 ASQGEMIDRIEFSVEQSHNYVKKATEQ 267
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query672
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.96
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.93
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.8
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.78
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.77
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.77
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.77
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.76
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.74
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.74
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.73
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 98.74
1s94_A180 S-syntaxin; three helix bundle, structural plastic 98.66
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 97.43
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 95.5
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 95.29
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 94.99
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 94.9
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 94.42
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.94
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 93.13
1mqs_B50 SED5P, integral membrane protein SED5; SM-protein, 92.53
3b5n_D64 Protein transport protein SEC9; snare complex, syn 90.81
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 90.64
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 89.31
3b5n_C70 Protein transport protein SEC9; snare complex, syn 88.76
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 85.86
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 84.5
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 80.15
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.96  E-value=2.3e-30  Score=265.46  Aligned_cols=227  Identities=17%  Similarity=0.176  Sum_probs=153.6

Q ss_pred             cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3554          95 FVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRK---SLFND---KPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQ  168 (672)
Q Consensus        95 ~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRk---sLFDD---~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~  168 (672)
                      ....+++|++.+++|+.+|..+..++.+|.+||++.   +.|+|   ...+|++|+..|++.++.|+..|+.|+...+..
T Consensus        39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~  118 (279)
T 2xhe_B           39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA  118 (279)
T ss_dssp             -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345789999999999999999999999999999985   44666   358999999999999999999999999876543


Q ss_pred             cccc-c-CCccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCc
Q psy3554         169 RDVI-S-SGHQH-LLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSV  245 (672)
Q Consensus       169 ~~~~-~-s~skq-e~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~  245 (672)
                      ...+ . ..+.. +..+++|++..|.++|++++..|+++|..|.+.+|.+..|.  +... .+.     ++      .. 
T Consensus       119 ~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~--~~i~-~~~-----~~------~e-  183 (279)
T 2xhe_B          119 QQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ--CRVV-EPS-----LS------DD-  183 (279)
T ss_dssp             HHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CCSS-CCC-----CS------ST-
T ss_pred             hhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-CCC-----CC------HH-
Confidence            2100 0 01111 34789999999999999999999999998887777543331  1111 000     00      00 


Q ss_pred             cchhhhhhcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554         246 LLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQ  325 (672)
Q Consensus       246 LldEe~esg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFq  325 (672)
                      -.++.       ++.      +..      ..|++    .+     ++.. ....++|++|+++|.+||++|.||++||+
T Consensus       184 e~~~~-------~e~------g~~------~~f~q----~~-----~~~~-~~~~~~i~eR~~eI~~Ie~~i~el~~if~  234 (279)
T 2xhe_B          184 AIQKV-------IEH------GTE------GIFSG----MR-----LEGA-EAKLNEIRDRHKDIQQLERSLLELHEMFT  234 (279)
T ss_dssp             THHHH-------HHH------C---------------------------------CTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------HhC------Cch------HHHHH----HH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00110       000      000      01211    01     1111 34567899999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554         326 QLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST  365 (672)
Q Consensus       326 QLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~  365 (672)
                      |||+||.+|||||||||+||+.|..+|++|..+|.+|.+.
T Consensus       235 dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~  274 (279)
T 2xhe_B          235 DMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHY  274 (279)
T ss_dssp             HHHTTTTTSCSSTTCHHHHHHTCCCCC-------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 672
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 6e-20
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.3 bits (213), Expect = 6e-20
 Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 44/238 (18%)

Query: 98  NYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQ 157
           ++  FM     I +++      + ++  L  ++ L      +   L + +   +      
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSL-HKRLLTEVNEEQASHLRHSLDNFVAQATDL 61

Query: 158 IAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKS 217
             KL+   K  +           ++  +     + +   +  +++ V     E  K+   
Sbjct: 62  QFKLKNEIKSAQRDGIHD-----TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116

Query: 218 RRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQN 277
           R+       A      AA+S                                      Q 
Sbjct: 117 RQYMIIQPEATEDEVEAAISDV---------------------------------GGQQI 143

Query: 278 MSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQE 335
            S   L   ++ +        +   +Q+R   +  +E ++ EL  +F  +  +V EQ+
Sbjct: 144 FSQALLNANRRGEAK-----TALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query672
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.74
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 98.49
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 82.56
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=4.4e-17  Score=152.06  Aligned_cols=187  Identities=16%  Similarity=0.171  Sum_probs=127.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3554          99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKP------TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVI  172 (672)
Q Consensus        99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s------~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~  172 (672)
                      ..+|++.+++|..+|..+..++.+|.+++++.....+..      .+|+.++..|+..+..|...++.++...       
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~-------   76 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG-------   76 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------
Confidence            468999999999999999999999999998854433321      4566666666666666666666665421       


Q ss_pred             cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhh
Q psy3554         173 SSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQC  252 (672)
Q Consensus       173 ~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~e  252 (672)
                           ....+..+++..|.++|.+++..|+.++..|.+.+++...|...+.....                   .+++.+
T Consensus        77 -----~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~-------------------~~~~~~  132 (196)
T d1fioa_          77 -----IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEA-------------------TEDEVE  132 (196)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-------------------CHHHHH
T ss_pred             -----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc-------------------cchhhh
Confidence                 12457899999999999999999999999999999988777766543110                   011100


Q ss_pred             hcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554         253 AIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQ  332 (672)
Q Consensus       253 sg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~  332 (672)
                      .. . .+.++       .+.+     .+..+..+    ..+.. ....+++++|+++|.+||++|.||++||+|||+||.
T Consensus       133 ~~-~-~~~~~-------~~~~-----~~~~~~~~----~~~~~-~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~  193 (196)
T d1fioa_         133 AA-I-SDVGG-------QQIF-----SQALLNAN----RRGEA-KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVI  193 (196)
T ss_dssp             HH-T-SHHHH-------HHHH-----HHHTC----------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             Hh-h-ccccc-------hHHH-----HHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            00 0 01000       0000     00000000    01111 457789999999999999999999999999999999


Q ss_pred             hhh
Q psy3554         333 EQE  335 (672)
Q Consensus       333 EQG  335 (672)
                      ||.
T Consensus       194 eQ~  196 (196)
T d1fioa_         194 EQQ  196 (196)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            983
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure