Psyllid ID: psy355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFDHQDR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHcccccc
Coil and Loop (DISEMBL)
MNEANRGFLLDALNSMMVNVGAELEKIIKTLKEnqdqkdicigaldnlsdyvCSIDYANDflkmgglpvlqpllegsdpeLRWRAAETVADIvqnnpfsqnfiIQTDFLNLLLTSIehdsnttvQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDsteaqslcrleplnlKFKLNFIkekhagnevYHKELEHVNSVLTEvfeedsleefdhqdr
Flexible Loop (DISEMBL)
MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEvfeedsleefdhqdr
Low Complexity Region (SEG)
MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFDHQDR
Disordered region (IsUnstruct)
******GFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF*************
Disordered Region (DISOPRED)
*NEANRGFLLDALNSMM******L***************ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH**NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE**********NL*******************ELEHVNSVLTEVF*************
Disordered Region (DISEMBL)
MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEED**********
Disordered Region (DISPRO)
*N**NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEED**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFDHQDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q99P31	357	Hsp70-binding protein 1 O	yes	N/A	0.954	0.761	0.310	2e-27
Q6IMX7	357	Hsp70-binding protein 1 O	yes	N/A	0.831	0.663	0.360	2e-27
Q9NZL4	362	Hsp70-binding protein 1 O	yes	N/A	0.831	0.654	0.356	5e-27
Q4R588	364	Hsp70-binding protein 1 O	N/A	N/A	0.831	0.651	0.352	1e-26
O43030	287	Hsp70 nucleotide exchange	yes	N/A	0.529	0.526	0.309	6e-11
Q1E3S4	212	Hsp70 nucleotide exchange	N/A	N/A	0.357	0.481	0.342	3e-08
Q32KV6	462	Nucleotide exchange facto	no	N/A	0.491	0.303	0.304	7e-08
Q9H173	461	Nucleotide exchange facto	no	N/A	0.543	0.336	0.287	2e-07
A2R4I6	287	Hsp70 nucleotide exchange	no	N/A	0.385	0.383	0.321	2e-07
Q2U9E2	216	Hsp70 nucleotide exchange	yes	N/A	0.385	0.509	0.312	9e-07

>sp|Q99P31|HPBP1_MOUSE Hsp70-binding protein 1 OS=Mus musculus GN=Hspbp1 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 156/303 (51%), Gaps = 31/303 (10%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK----------------ENQDQKDICIGA 44
           M+E  R +L +A+++       E+E++   L+                 +Q +++   GA
Sbjct: 65  MSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQATPAMAGEAELATDQQERE---GA 121

Query: 45  LDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
           L+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q  +
Sbjct: 122 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 181

Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK 163
           +    L  LL  ++ DS  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q + 
Sbjct: 182 LGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 241

Query: 164 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223
           +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E    +  +EH+L AL SL+
Sbjct: 242 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLV 298

Query: 224 KDSTEAQSLCR----LEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEE 279
            D  +    CR         L+ +   ++++    E Y +ELE    +L   F   + + 
Sbjct: 299 TDFPQGVRECREPELGLEELLRHRCQLLQQR----EEYQEELEFCEKLLQTCFSSPTDDS 354

Query: 280 FDH 282
            D 
Sbjct: 355 MDR 357

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.
Mus musculus (taxid: 10090)

>sp|Q6IMX7|HPBP1_RAT Hsp70-binding protein 1 OS=Rattus norvegicus GN=Hspbp1 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 43  GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 120 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 179

Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
            ++    L  LL  ++ DS  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q 
Sbjct: 180 QVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 239

Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
           + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E    +  +EH+L AL S
Sbjct: 240 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCS 296

Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFD 281
           L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F   + +  D
Sbjct: 297 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPTDDSMD 356

Query: 282 H 282
            
Sbjct: 357 R 357

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9NZL4|HPBP1_HUMAN Hsp70-binding protein 1 OS=Homo sapiens GN=HSPBP1 PE=1 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 43  GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 125 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 184

Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q 
Sbjct: 185 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 244

Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
           + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E    +  +EH+L AL S
Sbjct: 245 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCS 301

Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFD 281
           L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F   + +  D
Sbjct: 302 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMD 361

Query: 282 H 282
            
Sbjct: 362 R 362

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of immature CFTR.

Homo sapiens (taxid: 9606)

>sp|Q4R588|HPBP1_MACFA Hsp70-binding protein 1 OS=Macaca fascicularis GN=HSPBP1 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 43  GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 127 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 186

Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q 
Sbjct: 187 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 246

Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
           + +KL +KS FL+  L   + + +  L SMGMV+Q+  L+  E    +  +EH+L AL S
Sbjct: 247 QVQKLKVKSAFLLQNLLVGHPEHRGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCS 303

Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFD 281
           L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F   + +  D
Sbjct: 304 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPTDDSMD 363

Query: 282 H 282
            
Sbjct: 364 R 364

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.

Macaca fascicularis (taxid: 9541)

>sp|O43030|FES1_SCHPO Hsp70 nucleotide exchange factor fes1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fes1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)

Query: 36  DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN 95
           DQK+I   A DNL   V  ID AN+ + +   P L   LE  +  LR  AA T+A  VQN
Sbjct: 59  DQKEI---AFDNLEMLVEHIDNANNLVPLQLWPRLLKQLESPESTLRRLAAWTIATAVQN 115

Query: 96  NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSV 154
           NP SQ  +I+ D L +L  +++ + +   + K LYA++  ++ NE  +    K  + + +
Sbjct: 116 NPKSQQALIENDGLKILFGALKKEDSDETKNKVLYAITSELKLNEAGIALLDKIPNSWEM 175

Query: 155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 189
           L+  ++ K   +  +  F    L    ++ KQ++L
Sbjct: 176 LIEILELKHSVMTKRVIFFFYALLIQEDKSKQIIL 210

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 6/108 (5%)

Query: 44  ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQNNPFSQ 100
           A DN    + ++D AN+   MG L +  PL+E    ++P++R  AA  +   VQNN  +Q
Sbjct: 75  AFDNFEQLIENLDNANN---MGVLGLWTPLVEALSDAEPQMRKMAAWCIGTAVQNNEMAQ 131

Query: 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148
           N ++    +  LL+  + D +TTV+ K++YA+S  VR+++  L E  K
Sbjct: 132 NKLLDFKAVPKLLSLAKTDPDTTVRRKAIYALSSAVRNHQPSLDELQK 179

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 42  IGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           I AL +L  YV  +D A D L  GGL V+   L  ++P ++  AA  +     +NP  Q 
Sbjct: 204 IAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQV 263

Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
             I+   L  LL  +  +   T + K+L+A+  L+R      ++F+K  G  VL   +Q 
Sbjct: 264 EAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQE 323

Query: 162 KK-EKLVIKSCFLIACLCTDN 181
           K  E L ++   L+  L T+ 
Sbjct: 324 KGMEVLAVRVVTLLYDLVTEK 344

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Bos taurus (taxid: 9913)

>sp|Q9H173|SIL1_HUMAN Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 42  IGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           I AL +L  YV  +D A D L  GGL V+   L  ++P ++  AA  +     +NP  Q 
Sbjct: 203 IAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQV 262

Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
             I+   L  LL  +  +   T + K L+A+  L+R      ++F+K  G  VL   +Q 
Sbjct: 263 EAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGGLQVLRTLVQE 322

Query: 162 K-KEKLVIKSCFLIACLCTDN------------------NQVKQVLLSMGMVEQ 196
           K  E L ++   L+  L T+                    Q +QV L  G+ EQ
Sbjct: 323 KGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPEKLQQYRQVHLLPGLWEQ 376

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Homo sapiens (taxid: 9606)

>sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 44  ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
           A DN    + SID AN+   +G    L  LL+  +P++R  AA  +   VQNN  +Q+ +
Sbjct: 81  AFDNFEQLIESIDNANNLEPLGLWTPLVELLDHKEPDMRRMAAWCIGTAVQNNEKAQDKL 140

Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR--DGFS 153
           I  + L  L++    D+   V+ K++YA+S  VR+ +  + E  K   +G+S
Sbjct: 141 IVLNALPKLVSLATADTTPVVRKKAVYAISSAVRNYQPAMDEVTKSLPEGYS 192

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q2U9E2|FES1_ASPOR Hsp70 nucleotide exchange factor fes1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=fes1 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 44  ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
           A DN    + SID AN+   +G    L  LL+  + E+R  AA  +   VQNN  +Q+ +
Sbjct: 76  AFDNFEQLIESIDNANNLEPLGLWTPLVELLQHEEAEMRRMAAWCIGTAVQNNEKAQDKL 135

Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR--DGFS 153
           +  + +  L+T    DSN   + K+++A+S  VR+ +  + E +K   +G+S
Sbjct: 136 VVFNAVPKLVTMSTTDSNPATRKKAVFALSSAVRNYQPAMDELVKHLPEGYS 187

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
242015041	355	Hsp70-binding protein, putative [Pedicul	0.863	0.692	0.416	6e-43
405969485	322	Hsp70-binding protein 1 [Crassostrea gig	0.954	0.844	0.345	1e-40
156537283	362	PREDICTED: hsp70-binding protein 1-like	0.863	0.679	0.397	2e-38
322786501	283	hypothetical protein SINV_14579 [Solenop	0.835	0.840	0.400	5e-38
307214304	325	Hsp70-binding protein 1 [Harpegnathos sa	0.856	0.750	0.399	7e-38
307189402	361	Hsp70-binding protein 1 [Camponotus flor	0.785	0.620	0.387	3e-37
66554764	378	PREDICTED: hsp70-binding protein 1-like	0.789	0.595	0.399	4e-37
380014402	378	PREDICTED: hsp70-binding protein 1-like	0.789	0.595	0.399	6e-37
189217649	325	HSPA (heat shock 70kDa) binding protein,	0.936	0.821	0.364	2e-36
350418777	378	PREDICTED: hsp70-binding protein 1-like	0.849	0.640	0.395	6e-36

>gi|242015041|ref|XP_002428187.1| Hsp70-binding protein, putative [Pediculus humanus corporis] gi|212512730|gb|EEB15449.1| Hsp70-binding protein, putative [Pediculus humanus corporis]

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 157/257 (61%), Gaps = 11/257 (4%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSI 55
           ++E +R FL +AL SM +++  EL K IK L+     E          ALD++ DYV +I
Sbjct: 65  LSEEDRKFLENALKSMTLDIVEELLKHIKILQSANLIEGSVDSTKFEDALDSILDYVDNI 124

Query: 56  DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115
           D ANDF K+GG  + +P L+     +RWR AE +A + QNNP+ QN ++++  +  LL  
Sbjct: 125 DVANDFHKIGGFCIFKPCLQSIHSSIRWRGAELIAQLCQNNPYCQNKVLESKLVPTLLQM 184

Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
           I+ D +  V+VK+LYA+SCL R +EE LKEFI  DGFSVLLR +Q+  +KL IKS FL+ 
Sbjct: 185 IDSDIDDLVRVKALYAISCLARGSEEGLKEFIITDGFSVLLRALQTDVQKLNIKSAFLLT 244

Query: 176 CLCTDNNQVKQVLLSMGMVEQMCVLIDI-----EDALDTEMNEHLLSALASLIKDSTEAQ 230
            +C     VK  L++MG VEQ+   I +     E+     + EHLL+AL ++++D++ AQ
Sbjct: 245 SICQWKPHVKDDLVNMGYVEQLISQIAVFLQKYEEGHPPSL-EHLLNALLAIVEDNSMAQ 303

Query: 231 SLCRLEPLNLKFKLNFI 247
            + R   L  K  L+FI
Sbjct: 304 EISRTPELRFKSLLDFI 320

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405969485|gb|EKC34454.1| Hsp70-binding protein 1 [Crassostrea gigas]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 161/275 (58%), Gaps = 3/275 (1%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAND 60
           M E  R +L +AL  + V+    ++  ++ L   +  +   I ALD + ++  ++D+A D
Sbjct: 46  MPEERRQWLDNALRDLTVSPVERMKVGLRILTTAESTEQQMIDALDEIIEWCENLDFAAD 105

Query: 61  FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120
           F K+GG PVL  LL     E+RW+  E +A +VQN+ + Q   ++ +FL  +LT ++ D 
Sbjct: 106 FYKIGGYPVLSKLLPHKSAEIRWKTLELIAVLVQNHTYCQEMALKENFLPKMLTILDTDD 165

Query: 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180
           ++TV++K+LYAVSCL RDN E  K FI++DGFSVL+R +Q+  EKL IK+ F+++ LC D
Sbjct: 166 DSTVKIKALYAVSCLTRDNPEAQKVFIEKDGFSVLMRAMQTDVEKLKIKAAFMLSALCVD 225

Query: 181 NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNL 240
              +K V+   GM+EQ+  +++ E       +EH L+AL S++ +  +A   C+   L L
Sbjct: 226 RPDIKDVMCDTGMIEQLVGVLNEE---HNSFHEHTLAALLSIVTNHQKAVEECQRPELEL 282

Query: 241 KFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEED 275
             KL        G + + +E ++   +L  + ++D
Sbjct: 283 DKKLQERIRSLNGKDEFREESQYAKELLKIITKDD 317

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|156537283|ref|XP_001605940.1| PREDICTED: hsp70-binding protein 1-like [Nasonia vitripennis]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 147/259 (56%), Gaps = 13/259 (5%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSI 55
           M+E  + FL +AL+SM VNV  EL+K +K L        +D       ALD ++D   S+
Sbjct: 76  MDEERKNFLNEALSSMAVNVIEELQKDVKLLHNVMDVRVEDDPSQYEAALDRIADLADSM 135

Query: 56  DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115
           D ANDF K+GG  V  P L      +RWR A  +A++ QNNPF Q  +++  F+ +LL+ 
Sbjct: 136 DVANDFYKIGGFSVFGPCLNSPHSGIRWRVANVIAELTQNNPFCQEKVLEAGFMPILLSM 195

Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
           ++ D +   ++K+LYAVSC+VR +   L+     DG+SVL+R IQS  EKL IKS FL++
Sbjct: 196 VDTDPSDMARIKALYAVSCIVRGHALALRYMEINDGYSVLMRAIQSPVEKLQIKSAFLLS 255

Query: 176 CLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST-EAQSL 232
            LC  +  N +K  L+ MG++EQ   L+ +  +L  E  E LLS L  L  D+   A   
Sbjct: 256 ALCNKDKGNDLKLTLIKMGLIEQAAGLLAM-GSLLPETREQLLSVLNGLTNDNYFPALKE 314

Query: 233 CRLEPLNLKFKLNFIKEKH 251
           CR   L LK  L    E+H
Sbjct: 315 CRRPELCLKQTL----ERH 329

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786501|gb|EFZ12946.1| hypothetical protein SINV_14579 [Solenopsis invicta]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 9/247 (3%)

Query: 6   RGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSIDYAND 60
           + FL +AL+S+ VNV  EL+K I+ L         D        L+ ++D+V +ID AND
Sbjct: 2   KTFLNEALSSLTVNVIEELQKAIQVLSNVVNLRVDDDLSEYENVLERMADFVDNIDIAND 61

Query: 61  FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120
           F K+GG  V QP L  S   +RWR A+ +A++ QNNPF Q+ +++     +LL+ I+ D 
Sbjct: 62  FYKIGGFSVFQPCLNSSHSSIRWRIADIIAELAQNNPFCQDKLLEAGVFPVLLSIIDTDP 121

Query: 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC-- 178
           +   ++K+LYAVSC+VR +   LK     DG+SVLLR +QS  EKL IKS FL++ LC  
Sbjct: 122 SEQARIKALYAVSCIVRGHPASLKYMDTHDGYSVLLRAMQSPVEKLQIKSAFLLSSLCSK 181

Query: 179 TDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS-TEAQSLCRLEP 237
           +D+N +K  L+ MG +EQ   L+   D L   + E LL  L+S++ D+   A   CR   
Sbjct: 182 SDSNDMKYTLIKMGFIEQAAGLLGRID-LQPTVREQLLRVLSSMVNDNFLPALKECRRSQ 240

Query: 238 LNLKFKL 244
           L L+  L
Sbjct: 241 LCLRSTL 247

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214304|gb|EFN89391.1| Hsp70-binding protein 1 [Harpegnathos saltator]

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 152/253 (60%), Gaps = 9/253 (3%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSI 55
           ++E  + FL +AL+S+ VNV  EL++ IK L      +      I   AL+ +S ++ +I
Sbjct: 33  LDEEKKTFLNNALSSLTVNVIEELQEDIKILSGIVNLKTDGDSSIYENALNRISHHIDNI 92

Query: 56  DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115
           D ANDF K+GG  VLQ  L+ S   +RWR A+ +A++ QNNPF Q  I+ T    +LL+ 
Sbjct: 93  DIANDFYKIGGFSVLQLCLDCSHSNIRWRIADIIAELAQNNPFCQEKILDTGLFPILLSM 152

Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
           ++ D +   +VK+LYA+SC+VR+N   LK     DG+SVLLR +QS  EKL IKS FL++
Sbjct: 153 VDTDVSEHTKVKALYAISCIVRENSTSLKYMEINDGYSVLLRALQSPVEKLQIKSAFLLS 212

Query: 176 CLCT--DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS-TEAQSL 232
            LC+  D++ +K +L+ MG +EQ   L+ +   L  E+ E LL  L S++ D+   A   
Sbjct: 213 NLCSKEDSSDIKHILIKMGFIEQAVGLL-LRCNLQLEIREQLLRMLYSMVNDNFLPALEE 271

Query: 233 CRLEPLNLKFKLN 245
            R   L LK+ L+
Sbjct: 272 LRRPQLRLKYILD 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189402|gb|EFN73812.1| Hsp70-binding protein 1 [Camponotus floridanus]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 140/232 (60%), Gaps = 8/232 (3%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSI 55
           ++E  + FL +AL+S+ VNV  E++K ++TL         D       AL+ ++D V +I
Sbjct: 75  LDEEKKTFLNEALSSLTVNVIEEMQKAVQTLSNVGNLRADDDSSEYENALERMADLVDNI 134

Query: 56  DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115
           D ANDF K+GG  + QP L  S   +RWR A+ +A++ QNNPF Q+ +++     +LL+ 
Sbjct: 135 DIANDFYKIGGFAIFQPCLNSSHSNIRWRIADIIAELAQNNPFCQDKLLEAGVFPVLLSI 194

Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
           I+ D +   ++K+LYAVSC+VR +   LK     DG+SVLLR +QS  EKL IKS FL++
Sbjct: 195 IDTDPSEQARIKALYAVSCIVRGHPASLKYMDTNDGYSVLLRAMQSPVEKLQIKSAFLLS 254

Query: 176 CLCT--DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225
            LC+  D++ +K  L+ MG +EQ   L+   + L + + E LL  L  ++ D
Sbjct: 255 SLCSKDDSSDIKCTLVKMGFIEQAAGLLGRMN-LQSTVREQLLRVLNGMVND 305

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66554764|ref|XP_393027.2| PREDICTED: hsp70-binding protein 1-like [Apis mellifera]

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 8/233 (3%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSI 55
           M+E  + FL   L+S+  N+  EL+K IK L         D       AL+ ++D+V +I
Sbjct: 92  MDEERQEFLKQTLSSLSCNIIEELQKSIKVLSNVIDLRPDDDTSQHESALEKIADFVDNI 151

Query: 56  DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115
           D ANDF K+GG  +  P L      +RWRAA+ +A++ QNNPF Q   ++T    +LL  
Sbjct: 152 DIANDFYKIGGFSIFGPCLNSPHSSIRWRAADVIAELAQNNPFCQERFLETGLFPILLNM 211

Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
           I+ D   TV++K+LYAVSC+VR++   LK     DG+S+LLR +QS  +KL IKS FL++
Sbjct: 212 IDTDPAETVRIKALYAVSCIVREHPMSLKYMDINDGYSILLRAMQSSIKKLQIKSAFLLS 271

Query: 176 CLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226
            LC+    N +K  L++MG++EQ   L+ I D L  E+ + LL+ L  L  D+
Sbjct: 272 SLCSKENVNDLKLTLVNMGLIEQATGLLAIGDLL-PEIRDQLLNILDGLTNDN 323

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014402|ref|XP_003691221.1| PREDICTED: hsp70-binding protein 1-like [Apis florea]

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/233 (39%), Positives = 137/233 (58%), Gaps = 8/233 (3%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSI 55
           M+E  + FL   L+S+  N+  EL+K IK L         D       AL+ ++D+V +I
Sbjct: 92  MDEERQEFLKQTLSSLSCNIIEELQKSIKVLSNVIDLRPDDDTSQHESALEKIADFVDNI 151

Query: 56  DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115
           D ANDF K+GG  +  P L      +RWRAA+ +A++ QNNPF Q   ++T    +LL  
Sbjct: 152 DIANDFYKIGGFSIFGPCLNSPHSSIRWRAADVIAELAQNNPFCQERFLETGLFPILLNM 211

Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
           I+ D   TV++K+LYAVSC+VR++   LK     DG+S+LLR +QS  +KL IKS FL++
Sbjct: 212 IDTDPAETVRIKALYAVSCIVREHPMSLKYMDINDGYSILLRAMQSSIKKLQIKSAFLLS 271

Query: 176 CLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226
            LC     N +K  L++MG++EQ   L+ I D L  E+ + LL+ L  L  D+
Sbjct: 272 SLCNKENVNDLKLTLVNMGLIEQATGLLAIGDLL-PEIRDQLLNILDGLTNDN 323

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189217649|ref|NP_001121272.1| HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 [Xenopus laevis] gi|115528255|gb|AAI24887.1| LOC100158355 protein [Xenopus laevis]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 166/285 (58%), Gaps = 18/285 (6%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIKTLKE------NQDQKDICIGALDNLSDYVCS 54
           M+E  R +L  A+NS       E++ + + LKE      N D++D    AL+ L+D   +
Sbjct: 39  MSEERRQWLQQAMNSAFSGQVDEVKIMKECLKELSNETHNGDEEDAKEQALELLADLCDN 98

Query: 55  IDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113
           +D A+DF K+GG+ +L    +     ELRWR+A+ +    QN PF Q   ++   + +LL
Sbjct: 99  LDNASDFCKLGGMNLLLSRYVNCPQAELRWRSADLIGICSQNVPFVQETALRLGAVKILL 158

Query: 114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 173
             ++ DSN  V++K+L+A+SCLVR+ EE L EF+K+DGFSVL+R +QS  +KL +KS FL
Sbjct: 159 QLLDLDSNDQVRIKALFAISCLVREQEEGLAEFLKQDGFSVLMRAMQSDAQKLKVKSAFL 218

Query: 174 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233
           +  L   + + K  L SMGMV+Q+  L+  +    +  +EH+L AL S + D  +A S C
Sbjct: 219 LQNLLISHPEHKGTLCSMGMVQQLVSLLHTD---HSPFHEHVLGALCSFVTDFPQAVSEC 275

Query: 234 RLEPLN----LKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEE 274
           R+  L     LK +   +++K    E + +ELE+  S+L   F++
Sbjct: 276 RVPELAFEDLLKERCQLLEKK----EEFQEELEYCKSLLQICFQK 316

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350418777|ref|XP_003491963.1| PREDICTED: hsp70-binding protein 1-like [Bombus impatiens]

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 144/253 (56%), Gaps = 11/253 (4%)

Query: 1   MNEANRGFLLDALNSMMVNVGAELEKIIK------TLKENQDQKDICIGALDNLSDYVCS 54
           M+E  R FL   L+S+  NV  EL+K IK       L+ + D  +    AL+ ++D+V +
Sbjct: 92  MDEERREFLKQTLSSLSCNVTEELQKAIKLLSNVVDLRPDNDTSE-HESALERIADFVDN 150

Query: 55  IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 114
           ID ANDF K+GG  +  P L      +RWRAA+ +A++ QNNPF Q   ++T     LL 
Sbjct: 151 IDIANDFYKIGGFTIFGPCLNCPHSSIRWRAADIIAELAQNNPFCQERFLETGLFPTLLN 210

Query: 115 SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI 174
            I+ D   TV++K+LYA+SC+VR +   L      DG+SVLLR +QS  +KL IKS FL+
Sbjct: 211 MIDTDPVETVKIKALYAISCIVRGHPISLTYMDINDGYSVLLRAMQSSIKKLQIKSAFLL 270

Query: 175 ACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS-TEAQS 231
           + LC     N +K  L++MG++EQ   L+ I D L  E+ + LL+ L  L  D    A  
Sbjct: 271 SSLCNKENVNNLKLTLVNMGLIEQAIGLLAIGDLL-PEIRDQLLNILDGLTNDDFLPALK 329

Query: 232 LCRLEPLNLKFKL 244
            CR   L+L+  L
Sbjct: 330 ECRRPELSLQSTL 342

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
ZFIN|ZDB-GENE-030219-55	334	hspbp1 "HSPA (heat shock 70kDa	0.877	0.748	0.372	1.3e-34
RGD|628677	357	Hspbp1 "HSPA binding protein,	0.859	0.686	0.353	4.7e-32
MGI|MGI:1913495	357	Hspbp1 "HSPA (heat shock 70kDa	0.859	0.686	0.353	6e-32
UNIPROTKB|Q9NZL4	362	HSPBP1 "Hsp70-binding protein	0.828	0.651	0.358	1.3e-31
UNIPROTKB|E2QZB3	357	HSPBP1 "Uncharacterized protei	0.859	0.686	0.349	5.4e-31
UNIPROTKB|F1RMR6	357	HSPBP1 "Uncharacterized protei	0.849	0.677	0.349	5.4e-31
UNIPROTKB|Q2KJ77	357	HSPBP1 "HSPA (Heat shock 70kDa	0.849	0.677	0.345	1.1e-30
FB|FBgn0036306	306	CG10973 [Drosophila melanogast	0.852	0.794	0.310	5.3e-24
TAIR|locus:2185113	324	Fes1C "Fes1C" [Arabidopsis tha	0.8	0.703	0.282	9.2e-20
TAIR|locus:2083559	363	Fes1A "Fes1A" [Arabidopsis tha	0.8	0.628	0.277	1.2e-19

ZFIN|ZDB-GENE-030219-55 hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Danio rerio (taxid:7955)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 95/255 (37%), Positives = 145/255 (56%)

Query:    32 KENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPV-LQPLLEGSDPELRWRAAETVA 90
             +E + + D    AL+ LS+   ++D A D +K+GGL + L   L  ++  +RWRAA+ +A
Sbjct:    84 EEEEQEDDEREEALEMLSELCENLDNARDLMKLGGLDLCLSRCLCHTEAGIRWRAAQLIA 143

Query:    91 DIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150
                QN P  Q +++    L  LL   ++D ++TV+VK+LYAVSCLVR+ E  LK+F+  D
Sbjct:   144 SSAQNMPEVQFYLLNQGALLTLLQLADNDPHSTVRVKALYAVSCLVREQEAGLKDFLSHD 203

Query:   151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE 210
             GFSVL+R +QS  EKL  KS FL+  L   + + K  +LSMGMV+Q   L+ +  +  + 
Sbjct:   204 GFSVLMRGMQSDSEKLRTKSAFLLLNLLNSHPEHKDTVLSMGMVQQ---LVSVLRSPHSS 260

Query:   211 MNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTE 270
             ++EH+L AL  L++DS    S CR   L L+  L    +   G E   +ELE    +   
Sbjct:   261 VHEHVLGALCCLVEDSPRGMSDCRDPSLGLEELLKQRVQDLRGQEESLEELEFCERLRAV 320

Query:   271 VFEEDSLEEFDHQDR 285
              F   + E+ +  DR
Sbjct:   321 CFPGQTQED-NAMDR 334

GO:0005575 "cellular_component" evidence=ND

RGD|628677 Hspbp1 "HSPA binding protein, cytoplasmic cochaperone 1" [Rattus norvegicus (taxid:10116)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 89/252 (35%), Positives = 138/252 (54%)

Query:    31 LKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETV 89
             L  +Q +++   GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +
Sbjct:   111 LATDQQERE---GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 167

Query:    90 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149
                 QN    Q  ++    L  LL  ++ DS  TV+VK+L+A+SCLVR+ E  L +F++ 
Sbjct:   168 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRL 227

Query:   150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209
             DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E +   
Sbjct:   228 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS--- 284

Query:   210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269
               +EH+L AL SL+ D  +    CR   L L+  L    +    +E Y +ELE    +L 
Sbjct:   285 PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 344

Query:   270 EVFEEDSLEEFD 281
               F   + +  D
Sbjct:   345 TCFSSPTDDSMD 356

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

MGI|MGI:1913495 Hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Mus musculus (taxid:10090)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 89/252 (35%), Positives = 137/252 (54%)

Query:    31 LKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETV 89
             L  +Q +++   GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +
Sbjct:   111 LATDQQERE---GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 167

Query:    90 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149
                 QN    Q  ++    L  LL  ++ DS  TV+VK+L+A+SCLVR+ E  L +F++ 
Sbjct:   168 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRL 227

Query:   150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209
             DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E +   
Sbjct:   228 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS--- 284

Query:   210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269
               +EH+L AL SL+ D  +    CR   L L+  L    +     E Y +ELE    +L 
Sbjct:   285 PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQ 344

Query:   270 EVFEEDSLEEFD 281
               F   + +  D
Sbjct:   345 TCFSSPTDDSMD 356

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|Q9NZL4 HSPBP1 "Hsp70-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 86/240 (35%), Positives = 132/240 (55%)

Query:    43 GALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQN 101
             GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct:   125 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 184

Query:   102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
              ++    L  LL  ++ D+  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q 
Sbjct:   185 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 244

Query:   162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
             + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E +     +EH+L AL S
Sbjct:   245 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCS 301

Query:   222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFD 281
             L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F   + +  D
Sbjct:   302 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMD 361

GO:0004857 "enzyme inhibitor activity" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=TAS

UNIPROTKB|E2QZB3 HSPBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 88/252 (34%), Positives = 136/252 (53%)

Query:    31 LKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETV 89
             L  +Q +++   GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +
Sbjct:   111 LATDQQERE---GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLI 167

Query:    90 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149
                 QN    Q  ++    L  LL  ++ D    V+VK+L+A+SCLVR+ E  L +F++ 
Sbjct:   168 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDLVRVKALFAISCLVREQEVGLLQFLRL 227

Query:   150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209
             DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMGMV+Q+  LI  E +   
Sbjct:   228 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALIRTEHS--- 284

Query:   210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269
               +EH+L AL SL+ D  +    CR   L L+  L    +    +E Y +ELE    +L 
Sbjct:   285 PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 344

Query:   270 EVFEEDSLEEFD 281
               F   + +  D
Sbjct:   345 TCFSSPTDDSMD 356

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

UNIPROTKB|F1RMR6 HSPBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 88/252 (34%), Positives = 138/252 (54%)

Query:    31 LKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETV 89
             L  +Q +++   GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +
Sbjct:   111 LAADQQERE---GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLI 167

Query:    90 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149
                 QN    Q  ++    L  LL  ++ D   +V+VK+L+A+SCLVR+ E  L +F++ 
Sbjct:   168 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRL 227

Query:   150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209
             DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E +   
Sbjct:   228 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS--- 284

Query:   210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269
               +EH+L AL SL+ D  +    CR   L L+  L    +     E Y +ELE    +L 
Sbjct:   285 PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQ 344

Query:   270 EVFE---EDSLE 278
               F    +DS++
Sbjct:   345 TCFSTPTDDSMD 356

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

UNIPROTKB|Q2KJ77 HSPBP1 "HSPA (Heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 87/252 (34%), Positives = 138/252 (54%)

Query:    31 LKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETV 89
             L  +Q +++   GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +
Sbjct:   111 LATDQQERE---GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLI 167

Query:    90 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149
                 QN    Q  ++    L  LL  ++ D    V+VK+L+A+SCLVR+ E  L +F++ 
Sbjct:   168 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDAVRVKALFAISCLVREQEAGLLQFLRL 227

Query:   150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209
             DGFSVL+R +Q + +KL +KS FL+  L   + + K  L +MGMV+Q+  L+  E +   
Sbjct:   228 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCAMGMVQQLVALVRTEHS--- 284

Query:   210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269
               +EH+L AL SL+ D  +    CR   L L+  L    +    +E Y +ELE    +L 
Sbjct:   285 PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 344

Query:   270 EVFE---EDSLE 278
               F    +DS++
Sbjct:   345 TCFSTPTDDSMD 356

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

FB|FBgn0036306 CG10973 [Drosophila melanogaster (taxid:7227)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 76/245 (31%), Positives = 122/245 (49%)

Query:     8 FLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGL 67
             FL +ALN+M V+  A L+  +  L   +   D  I +LD +  ++  ID A   +K+GG 
Sbjct:    44 FLANALNAMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKLGGT 103

Query:    68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 127
               L   +  SD E+R  A  TVA++ QNN F QN +I   FL  L  ++ H +  TV+  
Sbjct:   104 ATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAKNLSHSNPNTVRC- 162

Query:   128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187
             SLYA+S L+R+ +    EF +  G   L+ C++S    + +K+ FLIA L +    V+  
Sbjct:   163 SLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTNVYVKTAFLIASLTSIEKSVRDD 222

Query:   188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFI 247
              +   +   +   +   D  D +  E  L AL+SL ++S    S  + E +  K +    
Sbjct:   223 FVKEEVFPVLVENLKPVDDFDIKQ-ETTLFALSSLSRESELKLSTEKREEILSKLQQIIS 281

Query:   248 KEKHA 252
             K K +
Sbjct:   282 KNKQS 286

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 68/241 (28%), Positives = 124/241 (51%)

Query:     1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQD--------QKDICIGALDNLSDYV 52
             ++E +R +  +A+ S  V+V   L++I + L+  Q          +DI  G LD L ++V
Sbjct:    28 LSEEDRKWFAEAMQSQTVDVVKRLKEITQVLQTPQQVLEAHEVTPQDI-EGLLDELQEHV 86

Query:    53 CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 112
              SID AND   +GGL  L   L+ S+  +R ++A+ V+ IV+NNP SQ  +++ + L  L
Sbjct:    87 ESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVSTIVENNPRSQESVMEANGLESL 146

Query:   113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 172
             L     D++   + ++L A+S L+R+N+  +  F   +G+S L   +++   +   K+  
Sbjct:   147 LLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIANGYSGLKDALETDSVRFQRKALN 206

Query:   173 LIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
             L+  L  +N+    + +  G+   M  L+    + D ++ E  L  L  L+K   +  S 
Sbjct:   207 LLHYLLQENDSDSDIAIEFGLHHLMMHLVS---SFDADVREAALRGLLELVKARKDC-ST 262

Query:   233 C 233
             C
Sbjct:   263 C 263

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 66/238 (27%), Positives = 121/238 (50%)

Query:     1 MNEANRGFLLDALNSMMVNVGAELEKII-------KTLKENQDQKDICIGALDNLSDYVC 53
             ++E +R + ++A+ S  V+V   +++I        + L E+    +     LD L ++V 
Sbjct:    28 LSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQTPEQVLVEHGVTPEDIQDLLDELQEHVE 87

Query:    54 SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113
             SID AND   +GGL  L   L+ S   +R +AA+ V+ IVQNNP SQ  +++T+ L  LL
Sbjct:    88 SIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVVSTIVQNNPRSQELVMETNALESLL 147

Query:   114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 173
             ++   D++   + ++L A+S L+R N+  +  F   +G++ L   + S   +   K+  L
Sbjct:   148 SNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLANGYAGLRDALASDSVRFQRKALNL 207

Query:   174 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231
             +  L  +++  + +   +G    M  L   +DA   E+ E  L  L  L ++  +  S
Sbjct:   208 LQYLLQEDDSDRSIATGLGFPRVMMHLASSDDA---EIREAALRGLLELSREKNDGSS 262

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99P31	HPBP1_MOUSE	No assigned EC number	0.3102	0.9543	0.7619	yes	N/A
Q9NZL4	HPBP1_HUMAN	No assigned EC number	0.3568	0.8315	0.6546	yes	N/A
Q6IMX7	HPBP1_RAT	No assigned EC number	0.3609	0.8315	0.6638	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	0.002

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 60  DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 119
             ++ GGLP L  LL  SD  ++  AA  ++++   N  +   +++   L  L+  +   
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KS 60

Query: 120 SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179
            +  V   +L+A+  L    E+     ++  G   L+  + S  E +   +   ++ L +
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG2160|consensus	342		100.0
KOG0166|consensus	514		100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166|consensus	514		99.92
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.88
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.87
KOG4224|consensus	550		99.76
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.72
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.62
KOG4224|consensus	550		99.57
KOG2160|consensus	342		99.49
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.42
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.38
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.32
KOG4199|consensus	461		99.31
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.3
KOG4199|consensus	461		99.29
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.28
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.22
PF08609	92	Fes1: Nucleotide exchange factor Fes1; InterPro: I	99.1
KOG0168|consensus	1051		99.05
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.01
KOG1048|consensus	717		99.0
KOG1517|consensus	1387		98.98
KOG1293|consensus	678		98.95
KOG1048|consensus	717		98.89
PRK09687	280	putative lyase; Provisional	98.87
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.68
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.68
PRK09687	280	putative lyase; Provisional	98.65
PF05536	543	Neurochondrin: Neurochondrin	98.53
KOG4500|consensus	604		98.52
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.49
KOG1293|consensus	678		98.48
KOG0946|consensus	970		98.47
KOG2122|consensus	2195		98.47
PTZ00429	746	beta-adaptin; Provisional	98.44
KOG0946|consensus	970		98.44
KOG2171|consensus	1075		98.44
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.42
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.41
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.41
KOG0168|consensus	1051		98.41
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.4
KOG2171|consensus	1075		98.39
KOG2122|consensus	2195		98.38
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.34
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.34
PF08045	257	CDC14: Cell division control protein 14, SIN compo	98.33
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.32
KOG3678|consensus	832		98.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.28
KOG4500|consensus	604		98.27
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	98.26
PTZ00429	746	beta-adaptin; Provisional	98.15
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.12
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.04
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.02
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	98.01
KOG4646|consensus	173		98.0
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.99
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.9
KOG1241|consensus	859		97.87
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.87
KOG1517|consensus	1387		97.86
KOG2759|consensus	442		97.82
KOG2759|consensus	442		97.81
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.79
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.75
COG5369	743	Uncharacterized conserved protein [Function unknow	97.67
PF05536	543	Neurochondrin: Neurochondrin	97.65
KOG1062|consensus	866		97.65
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.64
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.63
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.6
KOG2023|consensus	885		97.58
KOG1061|consensus	734		97.57
TIGR02270	410	conserved hypothetical protein. Members are found	97.54
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.54
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.53
PF05004	309	IFRD: Interferon-related developmental regulator (	97.52
KOG3678|consensus	832		97.51
KOG4413|consensus	524		97.51
COG5369	743	Uncharacterized conserved protein [Function unknow	97.47
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.46
KOG0213|consensus	1172		97.45
KOG1824|consensus	1233		97.45
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.42
KOG2023|consensus	885		97.42
KOG4646|consensus	173		97.41
KOG1222|consensus	791		97.39
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.32
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.24
TIGR02270	410	conserved hypothetical protein. Members are found	97.23
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.22
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.17
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.17
KOG1059|consensus	877		97.14
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.11
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.09
KOG2259|consensus	823		97.09
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.09
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.98
KOG1789|consensus	2235		96.95
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.87
KOG1241|consensus	859		96.85
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.84
KOG4413|consensus	524		96.82
KOG1222|consensus	791		96.76
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	96.74
KOG2734|consensus	536		96.73
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.68
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.67
KOG2973|consensus	353		96.67
KOG1062|consensus	866		96.66
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	96.64
KOG1242|consensus	569		96.6
KOG1991|consensus	1010		96.57
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.57
KOG2999|consensus	713		96.56
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.54
KOG0414|consensus	1251		96.53
KOG1060|consensus	968		96.45
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.43
KOG2734|consensus	536		96.41
KOG2025|consensus	892		96.35
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.3
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.29
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.28
KOG0212|consensus	675		96.26
KOG1059|consensus	877		96.24
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	96.15
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.15
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.12
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	96.12
KOG2259|consensus	823		96.12
KOG1967|consensus	1030		96.11
cd03561	133	VHS VHS domain family; The VHS domain is present i	96.09
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.07
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	96.06
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	96.04
KOG0567|consensus	289		96.04
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.04
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.03
KOG1248|consensus	1176		95.96
KOG4535|consensus	728		95.94
KOG0213|consensus	1172		95.87
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.87
KOG0301|consensus	745		95.83
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.81
KOG3036|consensus	293		95.79
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	95.72
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.7
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	95.7
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.69
KOG4653|consensus	982		95.69
KOG3036|consensus	293		95.67
KOG1248|consensus	1176		95.64
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.63
KOG0212|consensus	675		95.63
KOG1242|consensus	569		95.56
KOG2025|consensus	892		95.54
KOG2999|consensus	713		95.53
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.49
KOG1058|consensus	948		95.49
KOG2274|consensus	1005		95.43
KOG1789|consensus	2235		95.38
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.37
KOG1020|consensus	1692		95.37
KOG1991|consensus	1010		95.31
KOG2611|consensus	698		95.07
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.04
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.04
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.0
KOG4151|consensus	748		94.81
KOG2137|consensus	700		94.72
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.66
KOG1061|consensus	734		94.64
KOG1820|consensus	815		94.6
KOG1058|consensus	948		94.4
KOG1824|consensus	1233		94.37
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.34
KOG1243|consensus	690		94.33
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.2
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.2
KOG1240|consensus	1431		93.92
KOG1832|consensus	1516		93.89
KOG4151|consensus	748		93.89
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.87
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	93.84
KOG1943|consensus	1133		93.79
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.77
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.7
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.68
KOG2274|consensus	1005		93.66
KOG2973|consensus	353		93.64
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.64
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.64
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	93.54
KOG2956|consensus	516		93.44
KOG2933|consensus	334		93.44
KOG2062|consensus	929		93.16
KOG4535|consensus	728		93.13
PF05004	309	IFRD: Interferon-related developmental regulator (	92.98
KOG1060|consensus	968		92.84
COG5116	926	RPN2 26S proteasome regulatory complex component [	92.75
KOG1240|consensus	1431		92.73
KOG1077|consensus	938		92.73
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.72
KOG1077|consensus	938		92.54
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	92.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.38
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.37
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.28
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.19
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	92.18
KOG2611|consensus	698		92.12
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.06
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.01
COG5116	926	RPN2 26S proteasome regulatory complex component [	91.95
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.81
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.44
KOG1967|consensus	1030		91.38
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.36
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.32
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.25
KOG2032|consensus	533		91.22
KOG0413|consensus	1529		91.09
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.85
KOG1020|consensus	1692		90.77
KOG0915|consensus	1702		90.71
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.67
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	90.62
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	90.6
KOG2062|consensus	929		90.36
KOG3665|consensus	699		90.15
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	90.14
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	90.02
PF07814	361	WAPL: Wings apart-like protein regulation of heter	90.01
KOG4653|consensus	982		89.84
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	89.68
COG5098	1128	Chromosome condensation complex Condensin, subunit	89.57
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	89.5
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.44
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.71
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	88.52
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	88.37
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.21
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.86
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	87.79
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	87.61
KOG0414|consensus	1251		87.33
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	87.3
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	86.99
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	86.82
KOG3665|consensus	699		86.6
PLN03205	652	ATR interacting protein; Provisional	86.1
KOG1243|consensus	690		85.82
COG5656	970	SXM1 Importin, protein involved in nuclear import	85.76
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	85.32
KOG1566|consensus	342		84.96
KOG2073|consensus	838		84.65
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.42
KOG1943|consensus	1133		83.69
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	83.44
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	83.42
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.14
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	82.64
KOG2676|consensus	478		82.5
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	82.34
KOG2199|consensus	462		82.31
KOG1087|consensus	470		81.97
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	81.51
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	81.2
KOG2032|consensus	533		81.02
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	80.9
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	80.78
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	80.27
KOG1822|consensus	2067		80.07

>KOG2160|consensus

Probab=100.00  E-value=2.3e-39  Score=287.76  Aligned_cols=272  Identities=31%  Similarity=0.393  Sum_probs=242.4

Q ss_pred             HHhHHHHHHHHHHhc---CCHHHHHHHHHHHH--------hccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHH
Q psy355            3 EANRGFLLDALNSMM---VNVGAELEKIIKTL--------KENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQ   71 (285)
Q Consensus         3 ~e~~~~L~~al~~~~---~d~~~~mk~~l~~l--------~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv   71 (285)
                      ||+|+|+.++|...+   .+.++.|+.+..++        +.++.+.++++.||++|+++|++||||++|++.||+++++
T Consensus        51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll  130 (342)
T KOG2160|consen   51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL  130 (342)
T ss_pred             ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH
Confidence            899999999999987   55555555544433        3344567999999999999999999999999999999999


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355           72 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus        72 ~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                      .+|+++++.+|+.|+|+||+++||||.+|+.|++.|+++.|+..|+++.+..+|.+|++|||+++|++++++..|...+|
T Consensus       131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G  210 (342)
T KOG2160|consen  131 GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG  210 (342)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          152 FSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       152 i~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      +..|..+|++  .+.++|+||++++++|+.+.++....+...|+...+..+..+.   +.++++.++.++..++..-+..
T Consensus       211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~~~~~~  287 (342)
T KOG2160|consen  211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSL---DFEVNEAALTALLSLLSELSTR  287 (342)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHHHHhhc
Confidence            9999999999  5799999999999999999998888888889999999999888   9999999999999888766543


Q ss_pred             HhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCch
Q psy355          230 QSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLE  278 (285)
Q Consensus       230 ~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~  278 (285)
                      . +|..+..++.+.+++++..++.|...+.++.++..+.+++|.++...
T Consensus       288 ~-~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~~~  335 (342)
T KOG2160|consen  288 K-ELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPSIL  335 (342)
T ss_pred             c-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            3 46666678888888888777767788999999999999999777644

>KOG0166|consensus

Probab=100.00  E-value=9.4e-38  Score=290.99  Aligned_cols=258  Identities=15%  Similarity=0.197  Sum_probs=225.4

Q ss_pred             CCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355           18 VNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ   94 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~--~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~   94 (285)
                      ..+++.++.++++|..--.  +.+.+..|++.+.|+++. .+....+++.|++|.|+.+|.++++.++.+|+++|||+++
T Consensus       229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence            4567999999998877663  357789999999999966 4667788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH
Q psy355           95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI  174 (285)
Q Consensus        95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l  174 (285)
                      +++.+++.++++|++|.|..+++.++...+|+.|||+||||++|++.+.++++++|.+|.|+++|+++++++|++|+|+|
T Consensus       309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI  388 (514)
T KOG0166|consen  309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI  388 (514)
T ss_pred             ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence            99999999999999999999999656678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH--HHHHHc
Q psy355          175 ACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN--FIKEKH  251 (285)
Q Consensus       175 ~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~l  251 (285)
                      +|++.+ .+++..++++.|+|+++|.+|..+   |.++...++.+|.+|++..+.....-.++...+.+..+  +.++.|
T Consensus       389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~---D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L  465 (514)
T KOG0166|consen  389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP---DVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL  465 (514)
T ss_pred             HhhcccCCHHHHHHHHHcCCchhhhhcccCC---ChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence            999987 678999999999999999999988   99999999999999998886433211133322222222  467899


Q ss_pred             cChHhhHHHHHHHHHHHHHhcCCCCchh
Q psy355          252 AGNEVYHKELEHVNSVLTEVFEEDSLEE  279 (285)
Q Consensus       252 ~~~~e~~~~~~~~~~il~~~f~~~~~~~  279 (285)
                      |. |||+++|++|++|+++||+++++++
T Consensus       466 Q~-hen~~Iy~~A~~II~~yf~~e~~~~  492 (514)
T KOG0166|consen  466 QS-HENEEIYKKAYKIIDTYFSEEDDED  492 (514)
T ss_pred             hc-cccHHHHHHHHHHHHHhcCCCcccc
Confidence            95 5999999999999999999886543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.7e-36  Score=262.39  Aligned_cols=253  Identities=15%  Similarity=0.219  Sum_probs=222.4

Q ss_pred             CCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355           18 VNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ   94 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~--~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~   94 (285)
                      +.+...|.+++++|.+-..  +.+...+|++++.|+++... ....+.+.|..++|+.+|.|++..|+.+|++.+||+++
T Consensus       235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT  314 (526)
T COG5064         235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT  314 (526)
T ss_pred             CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence            5668899999999988774  36889999999999998864 44567888988999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH
Q psy355           95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI  174 (285)
Q Consensus        95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l  174 (285)
                      +++.+++.++++|+++.+..+|++ +...+|+.|||.||||+.|+..+.+++++++.+|+|+++|++.+.++|++|||++
T Consensus       315 G~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi  393 (526)
T COG5064         315 GSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI  393 (526)
T ss_pred             cCccceehheecccHHHHHHHhcC-hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997 5569999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh-hcccCcccHHHHHH-----
Q psy355          175 ACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS-LCRLEPLNLKFKLN-----  245 (285)
Q Consensus       175 ~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~-~~~~~~~~l~~~l~-----  245 (285)
                      +|++++   .|+..++++++|+|++||.+|...   +.++.+.+|.++.++++.+..... ...++. ....+++     
T Consensus       394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~---dNkiiev~LD~~eniLk~Ge~d~~~~~~nin-~ya~~vE~Aggm  469 (526)
T COG5064         394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV---DNKIIEVALDAIENILKVGEQDRLRYGKNIN-IYAVYVEKAGGM  469 (526)
T ss_pred             HhhhccccCCchHHHHHHHccchhHHHHHHhcc---CccchhhhHHHHHHHHhhhhHHHHhccCCcc-HHHHHHHhcccH
Confidence            999887   589999999999999999999998   999999999999999999964322 222221 1122333     


Q ss_pred             HHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355          246 FIKEKHAGNEVYHKELEHVNSVLTEVFEEDS  276 (285)
Q Consensus       246 ~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~  276 (285)
                      +.+..+|+ ..|.++|+++++|+++||+++|
T Consensus       470 d~I~~~Q~-s~n~~iy~KAYsIIe~fFgeeD  499 (526)
T COG5064         470 DAIHGLQD-SVNRTIYDKAYSIIEKFFGEED  499 (526)
T ss_pred             HHHHHhhh-ccccHHHHHHHHHHHHHcccch
Confidence            35668884 4899999999999999999886

>KOG0166|consensus

Probab=99.92  E-value=1.6e-24  Score=202.54  Aligned_cols=197  Identities=17%  Similarity=0.344  Sum_probs=173.9

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355           26 KIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  104 (285)
Q Consensus        26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~  104 (285)
                      ..++.|.... ....+..|.+.|..++.. .+..+.+++.|++|.++.||.|++..|+.+|.|+|||++...|.+++.++
T Consensus       113 ~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl  191 (514)
T KOG0166|consen  113 RLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL  191 (514)
T ss_pred             HHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH
Confidence            3444444322 356688999999998765 46777899999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC-hHh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN-EEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~-~~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      ++|++++|+.++.........+.+.|+|||+|||. |+. ...+  ...+|.|..++.+.|..+...|||+|++|+.+.+
T Consensus       192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n  269 (514)
T KOG0166|consen  192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTDACWALSYLTDGSN  269 (514)
T ss_pred             hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence            99999999999997554578999999999999997 333 2333  4789999999999999999999999999999999


Q ss_pred             hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +..+.+++.|+++.|+.+|.++   ...++..|++++.||+.++..
T Consensus       270 e~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~  312 (514)
T KOG0166|consen  270 EKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDE  312 (514)
T ss_pred             HHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHH
Confidence            9999999999999999999999   999999999999999999974

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=1.3e-22  Score=178.87  Aligned_cols=199  Identities=16%  Similarity=0.310  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355           42 IGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  120 (285)
Q Consensus        42 ~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~  120 (285)
                      .+|.+.|......- +.-.-.++.|++|.++.+|.+++.+||.+|.|+|||+|...+.|++.++++|++.+++.+|.++.
T Consensus       133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~  212 (526)
T COG5064         133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA  212 (526)
T ss_pred             HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence            35555665555442 22334688999999999999999999999999999999999999999999999999999998643


Q ss_pred             -CHHHHHHHHHHHHHHhhCCh--HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          121 -NTTVQVKSLYAVSCLVRDNE--ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       121 -~~~v~~~a~~ALs~l~r~~~--~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                       +.++.+.+.|.|||+|||..  +....+  ...+|.|.+++.+.|+.+...|+|+|++|..+..+..+.+++.|+.+.|
T Consensus       213 ~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL  290 (526)
T COG5064         213 IHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL  290 (526)
T ss_pred             chHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence             35888999999999999943  333333  3578999999999999999999999999999988999999999999999


Q ss_pred             HHhcccCCCCCccHHHHHHHHHHHHHhcChH---HHhhcccCcccHHHHHHH
Q psy355          198 CVLIDIEDALDTEMNEHLLSALASLIKDSTE---AQSLCRLEPLNLKFKLNF  246 (285)
Q Consensus       198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~---~~~~~~~~~~~l~~~l~~  246 (285)
                      +.+|.++   +..++..+++.+.+|+.++..   .+..|+... .|..+|.+
T Consensus       291 vElLs~~---sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~-a~~~lLs~  338 (526)
T COG5064         291 VELLSHE---SAKIQTPALRSVGNIVTGSDDQTQVIINCGALK-AFRSLLSS  338 (526)
T ss_pred             HHHhcCc---cccccCHHHHhhcCeeecCccceehheecccHH-HHHHHhcC
Confidence            9999999   999999999999999998863   344665433 44444543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.88  E-value=8.4e-21  Score=200.15  Aligned_cols=230  Identities=14%  Similarity=0.144  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355           41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  120 (285)
Q Consensus        41 ~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~  120 (285)
                      ...+...|..++-++.+...|...|++++|+.||.+++.++|..|+|+|.+++.+++..++.+.+.|++|.|+++|.+ .
T Consensus       380 qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~  458 (2102)
T PLN03200        380 QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-S  458 (2102)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-C
Confidence            466788888888888888899999999999999999999999999999999999999999999999999999999997 5


Q ss_pred             CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355          121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL  200 (285)
Q Consensus       121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l  200 (285)
                      +..+++.|+|+|++++.+++.+...++++||+|+|+++|++++.++|+.|+|+|+|++.+.++.+..+.+.|++++|+.+
T Consensus       459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L  538 (2102)
T PLN03200        459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL  538 (2102)
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence            68999999999999999999989999999999999999999999999999999999998766666666688999999999


Q ss_pred             cccCCCCCccHHHHHHHHHHHHHhcChHHH-hh------cccCcc---------------cHHH----------HHHHHH
Q psy355          201 IDIEDALDTEMNEHLLSALASLIKDSTEAQ-SL------CRLEPL---------------NLKF----------KLNFIK  248 (285)
Q Consensus       201 L~~~~~~d~~~~e~al~aL~~l~~~~~~~~-~~------~~~~~~---------------~l~~----------~l~~~~  248 (285)
                      |+++   +.+.++.++.+|.+|+..+.... ..      +..+..               ...+          -+ ..+
T Consensus       539 L~sg---d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL-~~L  614 (2102)
T PLN03200        539 LKNG---GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL-RTL  614 (2102)
T ss_pred             HhCC---CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH-HHH
Confidence            9998   99999999999999976543210 00      000000               0000          01 123


Q ss_pred             HHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355          249 EKHAGNEVYHKELEHVNSVLTEVFEEDS  276 (285)
Q Consensus       249 ~~l~~~~e~~~~~~~~~~il~~~f~~~~  276 (285)
                      ..++. +++.++++.+..+|..||....
T Consensus       615 v~LL~-sgs~~ikk~Aa~iLsnL~a~~~  641 (2102)
T PLN03200        615 IQLLS-SSKEETQEKAASVLADIFSSRQ  641 (2102)
T ss_pred             HHHHc-CCCHHHHHHHHHHHHHHhcCCh
Confidence            35553 4688999999999999998543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.87  E-value=1e-19  Score=192.05  Aligned_cols=237  Identities=15%  Similarity=0.140  Sum_probs=188.9

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ  105 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~  105 (285)
                      .++.|..+  +.+.+..|+..|..++... ++...+++.||+|+|+++|.++++.+|..|+|+|+|++.+++.++..+.+
T Consensus       451 LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~  528 (2102)
T PLN03200        451 LISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES  528 (2102)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            44444443  3567888999999998654 56778999999999999999999999999999999999988888888889


Q ss_pred             cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-------------------------------------HHHHHh
Q psy355          106 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-------------------------------------LKEFIK  148 (285)
Q Consensus       106 ~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-------------------------------------~~~f~~  148 (285)
                      .|++|+|+++|++ .+..++..|+|+|++++.+....                                     .+....
T Consensus       529 aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~  607 (2102)
T PLN03200        529 AGAVPALLWLLKN-GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA  607 (2102)
T ss_pred             CCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhc
Confidence            9999999999997 57899999999999997543221                                     011124


Q ss_pred             cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      .||++.|+++|++++.++|++|+|+|.+++.+.+++++.++..|+|++++.+|.+.   +.+++..+..+|.+++....+
T Consensus       608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~---~~~v~keAA~AL~nL~~~~~~  684 (2102)
T PLN03200        608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN---TEAVATQSARALAALSRSIKE  684 (2102)
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC---ChHHHHHHHHHHHHHHhCCCH
Confidence            68999999999999999999999999999999999999999999999999999998   999999999999999976643


Q ss_pred             HHh-hcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355          229 AQS-LCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDS  276 (285)
Q Consensus       229 ~~~-~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~  276 (285)
                      ... ... ....+..+++    .+.  ..+.+..+.+-..|..++.+++
T Consensus       685 ~q~~~~v-~~GaV~pL~~----LL~--~~d~~v~e~Al~ALanLl~~~e  726 (2102)
T PLN03200        685 NRKVSYA-AEDAIKPLIK----LAK--SSSIEVAEQAVCALANLLSDPE  726 (2102)
T ss_pred             HHHHHHH-HcCCHHHHHH----HHh--CCChHHHHHHHHHHHHHHcCch
Confidence            221 111 1112222222    333  2456777888888888877665

>KOG4224|consensus

Probab=99.76  E-value=7.1e-17  Score=143.86  Aligned_cols=189  Identities=20%  Similarity=0.319  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~L  115 (285)
                      ...+-.|++.|..+.+.-+|-+.++..||+|.||.++.++++++|..++.+|++++- ....+..+.+.|  .+|.|++|
T Consensus       181 irvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L  259 (550)
T KOG4224|consen  181 IRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL  259 (550)
T ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence            456778999999999999999999999999999999999999999999999999996 456788889998  99999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      .++ +++.++-.|..||.+++.+...+ ..+.++|++|.++++|+++..++.-...++|.|+.-+ |-....+++.|++.
T Consensus       260 md~-~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~  336 (550)
T KOG4224|consen  260 MDD-GSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLR  336 (550)
T ss_pred             HhC-CChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchh
Confidence            996 67799999999999999876654 5688999999999999999999999999999998654 44556788999999


Q ss_pred             HHHHhcccCCCCCc-cHHHHHHHHHHHHHhcChHHHhhc
Q psy355          196 QMCVLIDIEDALDT-EMNEHLLSALASLIKDSTEAQSLC  233 (285)
Q Consensus       196 ~L~~lL~~~~~~d~-~~~e~al~aL~~l~~~~~~~~~~~  233 (285)
                      +|+.+|..+   |. +++-+|..+|++++..+...+...
T Consensus       337 pLVrlL~~~---dnEeiqchAvstLrnLAasse~n~~~i  372 (550)
T KOG4224|consen  337 PLVRLLRAG---DNEEIQCHAVSTLRNLAASSEHNVSVI  372 (550)
T ss_pred             HHHHHHhcC---CchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence            999999988   54 599999999999998776554433

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.72  E-value=2.7e-16  Score=121.54  Aligned_cols=119  Identities=20%  Similarity=0.300  Sum_probs=112.1

Q ss_pred             HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355           60 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus        60 ~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      .+++.|+++.|+++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.+ +++.++..|+|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence            36789999999999999999999999999999999989999999999999999999996 67899999999999999998


Q ss_pred             hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          140 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       140 ~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      +.....+.+.|+++.|++++.+++.+++..|+|++.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            8888888889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.62  E-value=1.7e-14  Score=111.38  Aligned_cols=118  Identities=22%  Similarity=0.376  Sum_probs=111.1

Q ss_pred             HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355          102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~  181 (285)
                      .+++.|++|.|++++.+ .+..++..++++|++++.+.+.....+++.|+++.++.+|.+++++++..|+|++++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            36789999999999996 56899999999999999998999999999999999999999999999999999999999998


Q ss_pred             chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       182 ~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +.....+++.|+++.|+.+|..+   +..+++.++.+|.+|+
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence            88889999999999999999998   9999999999999886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4224|consensus

Probab=99.57  E-value=5.1e-14  Score=125.80  Aligned_cols=185  Identities=18%  Similarity=0.271  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      +..++.|-.+|..+..+-.+...++..|++|.+++||+++.-........+|.|++- .|-..-.+++.|.+.||+++|+
T Consensus       265 ~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~  343 (550)
T KOG4224|consen  265 DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLR  343 (550)
T ss_pred             hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHh
Confidence            578889999999999999999999999999999999999998888888899988874 4656667899999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                      ...+++++-.|...|-|++..+..+...|.+.|.+|.++.++.+++-.+|.+...+++-|+-. ...+.++.+.|+++.|
T Consensus       344 ~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iL  422 (550)
T KOG4224|consen  344 AGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPIL  422 (550)
T ss_pred             cCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCccee
Confidence            877788999999999999998999999999999999999999999999999888888877664 4578999999999999


Q ss_pred             HHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          198 CVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +.++.+.   +.+++..+..+|.++..+-.
T Consensus       423 Ip~t~s~---s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  423 IPWTGSE---SEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             ecccCcc---chhhcccHHHHHHhhhhhhH
Confidence            9999998   99999999999999987654

>KOG2160|consensus

Probab=99.49  E-value=1.2e-11  Score=111.01  Aligned_cols=184  Identities=17%  Similarity=0.251  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      +.+...-+...++++......++.++   ++...+ ..+.+++=+..|+.-|-..+.+-+ ....++..|++++++.++.
T Consensus        59 e~~~~~~e~~k~~~~~~~~~~~~~~~---~~~~~~~~~s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~  134 (342)
T KOG2160|consen   59 ELMQAHTEDQKDFVEDMKVISDVMSM---IPIVILNSSSVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLE  134 (342)
T ss_pred             HHHHHhhhhhhhhcccchhHHHHHHh---hhhhccCcccCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhc
Confidence            33444455556677777777777776   333333 345778889999999999997554 5777999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      + ++..+|+.|+|.|+.++++||..|+.+++.||++.|+..|.++ +..++.||.+++++|.++++.....+...++...
T Consensus       135 ~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~  213 (342)
T KOG2160|consen  135 N-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQV  213 (342)
T ss_pred             C-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHH
Confidence            7 6789999999999999999999999999999999999999976 5888999999999999999999999999999999


Q ss_pred             HHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      |...|.++ +.+..++.+++..+..+++..+.
T Consensus       214 L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  214 LRDVLQSN-NTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHHHHHcC-CcchHHHHHHHHHHHHHHHhhhh
Confidence            99999984 23788999999999999988763

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.42  E-value=5.5e-11  Score=114.65  Aligned_cols=182  Identities=14%  Similarity=0.221  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      +....+.+.|..+.+..+...-  ..+..+.|...|.|+++.||..|++.|+++++++....+.+.+.++++.++.++.+
T Consensus        53 e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~  130 (503)
T PF10508_consen   53 EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD  130 (503)
T ss_pred             HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence            4555666667777766543332  34556788889999999999999999999999999888899999999999999996


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  198 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~  198 (285)
                       ++..+.+.|+.+|++++.+ +...+.+++.++++.|..++..++..+|.++..++.+++..+++......+.|+++.++
T Consensus       131 -~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll  208 (503)
T PF10508_consen  131 -PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL  208 (503)
T ss_pred             -CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence             7889999999999999985 55667788889999999999988888999999999999999999999999999999999


Q ss_pred             HhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          199 VLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ..|+++   |.-++..++..|..|+. .++
T Consensus       209 ~eL~~d---DiLvqlnalell~~La~-~~~  234 (503)
T PF10508_consen  209 KELDSD---DILVQLNALELLSELAE-TPH  234 (503)
T ss_pred             HHhcCc---cHHHHHHHHHHHHHHHc-Chh
Confidence            999998   99999999999999998 443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.38  E-value=1.8e-10  Score=113.62  Aligned_cols=197  Identities=13%  Similarity=0.137  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      .....++.-|..+.++..+-..+++-|+++.|+++|.+++.++...+..+|.+++-. +.++..+.+.|++|+|.+++.+
T Consensus       264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s  342 (708)
T PF05804_consen  264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS  342 (708)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC
Confidence            345566778999999999999999999999999999999999999999999999964 5579999999999999999997


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  198 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~  198 (285)
                       ++..++..++.+|-|++-+ +.....+++.|.+|.|+.+|.+++  .+.-+..++++|+. ++..+..+...++++.++
T Consensus       343 -~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~  417 (708)
T PF05804_consen  343 -ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLM  417 (708)
T ss_pred             -CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHH
Confidence             5678999999999999875 556788999999999999998654  44568888888876 456888999999999999


Q ss_pred             HhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH
Q psy355          199 VLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN  245 (285)
Q Consensus       199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~  245 (285)
                      .+|...  .+..+...++..+.+++...+.+..-|...  +|..+++
T Consensus       418 ~~Ll~~--~~~~v~~eliaL~iNLa~~~rnaqlm~~g~--gL~~L~~  460 (708)
T PF05804_consen  418 QMLLEN--SEEEVQLELIALLINLALNKRNAQLMCEGN--GLQSLMK  460 (708)
T ss_pred             HHHHhC--CCccccHHHHHHHHHHhcCHHHHHHHHhcC--cHHHHHH
Confidence            986653  155566667788888887777666666432  4555555

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.32  E-value=3.3e-10  Score=99.57  Aligned_cols=196  Identities=19%  Similarity=0.240  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      .+.+++.+..|....+ +..+..|+-.+.......-+..-+.+.||++.+..+|.+|++.+|..|++++.|++.+. +.|
T Consensus        11 ~~~l~~Ll~lL~~t~d-p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTED-PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhH
Confidence            4667888888876554 34555666666665555456667899999999999999999999999999999999754 456


Q ss_pred             HHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          101 NFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      ..+ + ..++.+++...+ .-+..++..++.+|.+++..+.. ...+  .+.++.++++|.+++.++|..+..++.+| +
T Consensus        89 ~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nL-S  162 (254)
T PF04826_consen   89 EQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNL-S  162 (254)
T ss_pred             HHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHh-c
Confidence            555 3 267777776544 34668999999999999865433 3334  46899999999999999999999999998 4


Q ss_pred             CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          180 DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       180 ~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+|...+.++..+++..++.++...  .+.++...++..+.+|..+-
T Consensus       163 ~np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  163 ENPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENI  207 (254)
T ss_pred             cCHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhh
Confidence            5678888999999999999999875  35677888888888886544

>KOG4199|consensus

Probab=99.31  E-value=2.7e-10  Score=101.22  Aligned_cols=178  Identities=13%  Similarity=0.209  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC-CCHHHH---HHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG-SDPELR---WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr---~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      ....+...|..+.-.-+....+.+.||+..|++++.+ ....+|   ..++..|..++ +++.+...+++.|+.+.++.+
T Consensus       258 ~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l  336 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITL  336 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHH
Confidence            3334444444443333455668889999999999986 445555   67777888777 567789999999999999988


Q ss_pred             h-ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355          116 I-EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMG  192 (285)
Q Consensus       116 L-~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g  192 (285)
                      + ++.+++.|...++.+||-++--.|.....|++.||-...++.|+..  ...+|+.|||+|+|++..+.+++..++..|
T Consensus       337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G  416 (461)
T KOG4199|consen  337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG  416 (461)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc
Confidence            6 4567899999999999999988888888999999999999999975  478999999999999999888888888755


Q ss_pred             cHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355          193 MVEQMCVLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                       ++.|+..-+..   +...+..+-.+|.-|
T Consensus       417 -iE~Li~~A~~~---h~tce~~akaALRDL  442 (461)
T KOG4199|consen  417 -IEKLIRTAKAN---HETCEAAAKAALRDL  442 (461)
T ss_pred             -HHHHHHHHHhc---CccHHHHHHHHHHhc
Confidence             56666666665   666666666666544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.30  E-value=1.2e-10  Score=102.40  Aligned_cols=157  Identities=20%  Similarity=0.266  Sum_probs=125.9

Q ss_pred             HHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           62 LKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        62 ~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      ...+.+..|+.+|++ .+|.++..|..++|+.+ ..|..|+.+.+.|+++.+.++|.. +++.+|.+|++||.|++.+.+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh
Confidence            445668999999985 78999999999999987 578999999999999999999997 789999999999999987644


Q ss_pred             HhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          141 ECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       141 ~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                      . +..+ +.-+-.++-..+.++ +..+|..+..+|.+|+..+. ....+.  +.++.++.+|.++   +..++.+++.+|
T Consensus        87 n-~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l~--~~i~~ll~LL~~G---~~~~k~~vLk~L  158 (254)
T PF04826_consen   87 N-QEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHMLA--NYIPDLLSLLSSG---SEKTKVQVLKVL  158 (254)
T ss_pred             h-HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhHH--hhHHHHHHHHHcC---ChHHHHHHHHHH
Confidence            4 3333 333333444444444 78999999999999976543 333343  4799999999999   999999999999


Q ss_pred             HHHHhcChH
Q psy355          220 ASLIKDSTE  228 (285)
Q Consensus       220 ~~l~~~~~~  228 (285)
                      .+|......
T Consensus       159 ~nLS~np~~  167 (254)
T PF04826_consen  159 VNLSENPDM  167 (254)
T ss_pred             HHhccCHHH
Confidence            999876653

>KOG4199|consensus

Probab=99.29  E-value=1.5e-09  Score=96.51  Aligned_cols=198  Identities=13%  Similarity=0.225  Sum_probs=160.2

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcC----------cchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhC
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCS----------IDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQN   95 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~----------~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~n   95 (285)
                      .+..|+....+ +....+.+.+..++-+          ...|+.|.+.||+..|+..|+. -+|++...++-+|+.++-+
T Consensus       194 i~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  194 ILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            34456665554 4444556666666533          3468889999999999998885 6799999999999999999


Q ss_pred             CHHHHHHHHhcCcHHHHHHhhccCCCHHHH---HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc--CcHHHHHHH
Q psy355           96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQ---VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKS  170 (285)
Q Consensus        96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~---~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~--~~~~v~~ka  170 (285)
                      ++.|+ .+.+.|++..|++++.++.+...|   +.+++.|+.++ |+......+++.||.+.++.++..  +++.+-..+
T Consensus       273 ~E~C~-~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  273 DEICK-SIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHH-HHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            88877 588999999999999975444444   66777777764 677788899999999999998764  589999999


Q ss_pred             HHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       171 ~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +.+++-||-..|+....+++.|+-...++-++.. -....++..+..++.||+..+..
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P~~a~vQrnac~~IRNiv~rs~~  407 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-PVAAQVQRNACNMIRNIVVRSAE  407 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999998888863 12457899999999999988853

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.28  E-value=2.3e-09  Score=103.46  Aligned_cols=178  Identities=14%  Similarity=0.159  Sum_probs=152.5

Q ss_pred             HHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           24 LEKIIKTLKENQD--QKDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        24 mk~~l~~l~~~~~--~~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      ..++...|...-.  ++..+.-++..+..++...+. +.-+...+.++.++.+|.+++..|...|+.+|.+++.+.+.. 
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-  153 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-  153 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence            4444444443332  246788888999998877665 344677888999999999999999999999999999876654 


Q ss_pred             HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      +.++..+.++.|.+++.. .+..+|.++...+..++..++.....+...|.++.++..|.++|.-+|..|+-+++.|+. 
T Consensus       154 ~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-  231 (503)
T PF10508_consen  154 EQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-  231 (503)
T ss_pred             HHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence            467788889999999986 467899999999999999999999999999999999999999999999999999999999 


Q ss_pred             CchHHHHHHHCCcHHHHHHhcccC
Q psy355          181 NNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       181 ~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      .++..+++.+.|+++.|+.++...
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhcc
Confidence            778899999999999999999876

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.22  E-value=3.8e-09  Score=104.35  Aligned_cols=179  Identities=13%  Similarity=0.152  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      .+..+.++.-|..+.-..+|...+.+.|++++|++++.+++.+++..|+++|.|++. ++..+..+++.|++|+|+.+|.
T Consensus       304 ~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~  382 (708)
T PF05804_consen  304 EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLK  382 (708)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhC
Confidence            466777777888887777899999999999999999999999999999999999996 5667999999999999999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      .+   ..+..++..|.+++.+ +.+...|...+.+|.++++|-+ ++.++...+.+++.||+... ...+.+.+.|+++.
T Consensus       383 d~---~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~  457 (708)
T PF05804_consen  383 DP---NFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQS  457 (708)
T ss_pred             CC---chHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHH
Confidence            53   3556677788888774 4567788888999999997554 57888889999999997765 45578888889999


Q ss_pred             HHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      |+...-..   ...   ..+..+.||.++.+.
T Consensus       458 L~~ra~~~---~D~---lLlKlIRNiS~h~~~  483 (708)
T PF05804_consen  458 LMKRALKT---RDP---LLLKLIRNISQHDGP  483 (708)
T ss_pred             HHHHHHhc---ccH---HHHHHHHHHHhcCch
Confidence            98775544   222   344678888887743

>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity

Probab=99.10  E-value=1.3e-10  Score=86.09  Aligned_cols=59  Identities=25%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             HHhHHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHH
Q psy355            3 EANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDF   61 (285)
Q Consensus         3 ~e~~~~L~~al~~~~--~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~   61 (285)
                      +++|+|..++|..++  ++++++||+++.+|.+++.+.++++.||++|++||++||||+++
T Consensus        32 ~~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald~le~LVE~IDNANnl   92 (92)
T PF08609_consen   32 EERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALDNLEELVENIDNANNL   92 (92)
T ss_pred             hhhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcccccccC
Confidence            468999999999998  99999999999999999999999999999999999999999974

Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].

>KOG0168|consensus

Probab=99.05  E-value=6e-09  Score=101.80  Aligned_cols=198  Identities=15%  Similarity=0.208  Sum_probs=157.9

Q ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHH---HHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhh
Q psy355           19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAN---DFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQ   94 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~---~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~   94 (285)
                      ..--+||+.+.-|.... ++...+.|+-+|.+++.. -|-.   .|----.+|.|+.||++ .+++|.-.||++|.+++.
T Consensus       164 sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e  241 (1051)
T KOG0168|consen  164 SASSKAKKLLQGLQAES-DESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE  241 (1051)
T ss_pred             cchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence            33448899988887776 344555555555554422 1111   12212247899999998 578999999999999999


Q ss_pred             CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH
Q psy355           95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI  174 (285)
Q Consensus        95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l  174 (285)
                      --|..-..+++.|+||.|+.-|..-....+.+.++.||--|.|.++.   +++++||+...+..|.--+.-+|++|....
T Consensus       242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaia  318 (1051)
T KOG0168|consen  242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIA  318 (1051)
T ss_pred             hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997766556788999999999999998886   478899999999999877899999999999


Q ss_pred             HHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          175 ACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       175 ~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +|.|.. .++--.++.  ..+|.|..+|...   |.+..|.++-++..|+...
T Consensus       319 aN~Cksi~sd~f~~v~--ealPlL~~lLs~~---D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  319 ANCCKSIRSDEFHFVM--EALPLLTPLLSYQ---DKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             HHHHhcCCCccchHHH--HHHHHHHHHHhhc---cchhHHHHHHHHHHHHHhc
Confidence            999987 444555555  4899999999998   9999999999999998655

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.01  E-value=3.8e-08  Score=89.42  Aligned_cols=223  Identities=14%  Similarity=0.206  Sum_probs=147.5

Q ss_pred             CCHHhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcC------
Q psy355            1 MNEANRGFLLDALNSMM--------VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMG------   65 (285)
Q Consensus         1 m~~e~~~~L~~al~~~~--------~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~G------   65 (285)
                      +|+|+.++++..=+.-.        .+.....+-.+..|+.-...++...-.|.-+.+++.+ ......|....      
T Consensus        26 is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~  105 (312)
T PF03224_consen   26 ISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSD  105 (312)
T ss_dssp             S-HHHHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccch
Confidence            35666666664333221        1111222223344444422345566666667776655 34555565522      


Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC---CCHHHHHHHHHHHHHHhhCChHh
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRDNEEC  142 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~---~~~~v~~~a~~ALs~l~r~~~~~  142 (285)
                      -+.++++++.+++.-++..|+.+++.++...+....... .+.++.+++.+.+.   ++..++.-|+.+++++.+ .+..
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~  183 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEY  183 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchh
Confidence            588999999999999999999999999887665444322 56788888888752   234567889999999998 5777


Q ss_pred             HHHHHhcCcHHHHHHhh------cc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHH
Q psy355          143 LKEFIKRDGFSVLLRCI------QS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL  215 (285)
Q Consensus       143 ~~~f~~~~gi~~L~~~L------~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~a  215 (285)
                      ...|.+.||++.+..+|      ++ ....++=.+++++.-|+- ++.....+.+.++|+.|+.+++..  ...++...+
T Consensus       184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~  260 (312)
T PF03224_consen  184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDS--IKEKVVRVS  260 (312)
T ss_dssp             HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhc--ccchHHHHH
Confidence            88899999999999999      23 367888899988887654 567888899999999999999975  256888899


Q ss_pred             HHHHHHHHhcChH
Q psy355          216 LSALASLIKDSTE  228 (285)
Q Consensus       216 l~aL~~l~~~~~~  228 (285)
                      +.+|.|++...+.
T Consensus       261 la~l~Nl~~~~~~  273 (312)
T PF03224_consen  261 LAILRNLLSKAPK  273 (312)
T ss_dssp             HHHHHHTTSSSST
T ss_pred             HHHHHHHHhccHH
Confidence            9999999988863

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1048|consensus

Probab=99.00  E-value=9.1e-09  Score=100.24  Aligned_cols=179  Identities=17%  Similarity=0.196  Sum_probs=141.9

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH--hHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE--CLK  144 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~--~~~  144 (285)
                      +|..+.+|.|.++.++..|+.-|..++-++...+..+.+.|+||.|+.||.+ ....|++.|||||-|++.+...  +.-
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence            6788899999999999999999999999999999999999999999999998 5789999999999999998766  777


Q ss_pred             HHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC----CC---C----CccHH
Q psy355          145 EFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE----DA---L----DTEMN  212 (285)
Q Consensus       145 ~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~----~~---~----d~~~~  212 (285)
                      ++.+.||++.++++|+. .|..+++.++.++.||.+. ...+..++ ...+..|-..+-.+    ++   .    +.++-
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            88899999999999997 5999999999999999766 34544444 35566665554444    01   1    34566


Q ss_pred             HHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHH
Q psy355          213 EHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKE  249 (285)
Q Consensus       213 e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  249 (285)
                      -.+..+|.++...+.++.+.-+.-. ++.+.|=..+.
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~-GLIdaL~~~iq  427 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECD-GLIDALLFSIQ  427 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhcc-chHHHHHHHHH
Confidence            7889999999988876554333332 45455544443

>KOG1517|consensus

Probab=98.98  E-value=9.5e-09  Score=102.23  Aligned_cols=185  Identities=17%  Similarity=0.198  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           39 DICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      -.+++||.-|..+++---+|.++ ...|.+|.+++||+|+-.++|.-=+.+.+.|..-+|.||..+++.++-..+++.|.
T Consensus       485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            35889999999999888889887 67899999999999999999999999999999989999999999999999999988


Q ss_pred             cC--CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355          118 HD--SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  194 (285)
Q Consensus       118 ~~--~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v  194 (285)
                      .+  -+++-|.-|++.|+.+++|++.+|++..+.+.+...+..|.++ .+-+|..+|-+|+-|....+..+=.-.+.++.
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            52  2458899999999999999999999999999999999999986 69999999999999999888777777788999


Q ss_pred             HHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +.|..+|..+   -+++|..|..||..++...
T Consensus       645 ekL~~~LsD~---vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  645 EKLILLLSDP---VPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHHHhcCc---cHHHHHHHHHHHHHHhccc
Confidence            9999999988   9999999999999999875

>KOG1293|consensus

Probab=98.95  E-value=2.4e-08  Score=95.44  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=137.1

Q ss_pred             cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy355           55 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC  134 (285)
Q Consensus        55 ~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~  134 (285)
                      ++++..+...-....+.......+..++..|+-++-+++..-.....-+-...+..+|++++. +++..|+..++.||.|
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICN  445 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHH
Confidence            666666655444444444555778899999999998888755554444555678999999996 4778999999999999


Q ss_pred             HhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH-HHHHHhcccCCCCCccHHH
Q psy355          135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV-EQMCVLIDIEDALDTEMNE  213 (285)
Q Consensus       135 l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v-~~L~~lL~~~~~~d~~~~e  213 (285)
                      ++-.+.+-...|+..||+..+...+.+.++.+|.++.|+++++.-+..+..+...-..+- ..++.+...+   +..++|
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqe  522 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQE  522 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHH
Confidence            999999889999999999999999999999999999999999998765554443333333 5566777777   999999


Q ss_pred             HHHHHHHHHHhcChHHH
Q psy355          214 HLLSALASLIKDSTEAQ  230 (285)
Q Consensus       214 ~al~aL~~l~~~~~~~~  230 (285)
                      .++..|.|++-++.+.+
T Consensus       523 q~fqllRNl~c~~~~sv  539 (678)
T KOG1293|consen  523 QCFQLLRNLTCNSRKSV  539 (678)
T ss_pred             HHHHHHHHhhcCcHHHH
Confidence            99999999998876543

>KOG1048|consensus

Probab=98.89  E-value=2.1e-08  Score=97.70  Aligned_cols=197  Identities=16%  Similarity=0.225  Sum_probs=147.4

Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH--H
Q psy355           23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF--S   99 (285)
Q Consensus        23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~--~   99 (285)
                      .+.+++.+|.........  .|-.-+..++-.-+ -......+||++.||.+|.|+..+|+.+||+++-|++=++..  .
T Consensus       234 ~lpe~i~mL~~q~~~~qs--naaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQS--NAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhH--HHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            356777777765543333  33333444443322 233688999999999999999999999999999999976554  7


Q ss_pred             HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--------------cHH
Q psy355          100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--------------KEK  165 (285)
Q Consensus       100 q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--------------~~~  165 (285)
                      .-++.+.|++|.++++|++..|.++++.....+.||.-.  ...+..+-..+++.|..-+-.+              +..
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence            778999999999999999878899999999999998764  3344455456666665543321              256


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHH
Q psy355          166 LVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI  223 (285)
Q Consensus       166 v~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~  223 (285)
                      +-..++++|.|+.+.+.+.++.+-+. |.|..|+..+.+-   +.-|.+..|.+...|.++.
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLS  451 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLS  451 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcC
Confidence            77899999999999888888888765 8889999887742   2346778888888888764

>PRK09687 putative lyase; Provisional

Probab=98.87  E-value=1.1e-07  Score=85.18  Aligned_cols=169  Identities=13%  Similarity=0.152  Sum_probs=108.2

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  103 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v  103 (285)
                      ++..++.|.+++  ...+..|...|..+-+          -..++.+.++++++++.+|..|+++||.+-.... .    
T Consensus        25 ~~~L~~~L~d~d--~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~----   87 (280)
T PRK09687         25 DDELFRLLDDHN--SLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C----   87 (280)
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c----
Confidence            334444454433  2566666666664432          1236777888889999999999999998753211 1    


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH----hHH-------------------HHH---hcCcHHHHHH
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE----CLK-------------------EFI---KRDGFSVLLR  157 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~----~~~-------------------~f~---~~~gi~~L~~  157 (285)
                       ...++|.|..++.+++++.||..|+.+|+.+..+.+.    ...                   ++.   ....++.|+.
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~  166 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN  166 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence             1235777877766667888888899998887543220    000                   000   1124567777


Q ss_pred             hhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355          158 CIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       158 ~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                      +|++++..||..|+++|+.+..+++         .+++.|+.+|..+   +..+|..|..+|..+
T Consensus       167 ~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~---~~~VR~~A~~aLg~~  219 (280)
T PRK09687        167 LLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK---NEEIRIEAIIGLALR  219 (280)
T ss_pred             HhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC---ChHHHHHHHHHHHcc
Confidence            7777777777777777777633232         4567788888777   888888888888774

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.68  E-value=5.5e-08  Score=61.02  Aligned_cols=41  Identities=17%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355           96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r  137 (285)
                      ||.+++.+++.|++|+|+++|++ .++.+++.|+|||+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence            57788999999999999999996 789999999999999975

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.68  E-value=1.8e-05  Score=74.38  Aligned_cols=221  Identities=15%  Similarity=0.167  Sum_probs=148.7

Q ss_pred             CCHHhHHHHHHHHHH-----hc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHc-----CCHH
Q psy355            1 MNEANRGFLLDALNS-----MM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKM-----GGLP   68 (285)
Q Consensus         1 m~~e~~~~L~~al~~-----~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~-----Gg~~   68 (285)
                      +|+|+.++++..=+.     .. .+.....+-.+..+..... ++...-.|.-+.+++.. ...+..|++.     ..+.
T Consensus        26 Is~~d~~~ik~~d~~~~~~~~~~~~~~~y~~~~l~ll~~~~~-~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~  104 (429)
T cd00256          26 ISEEDYQFIKALEKKRVKEEILDVLSGQYVKTFVNLLSQIDK-DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWE  104 (429)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHhcccHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchH
Confidence            466666666533211     11 2223444445555554332 44444555556666544 2345567765     4678


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      +++++|++++.-+...|+.+++.+++-.+.........-.+..|...|++..+...+.-++.+++.+.+. +.....|.+
T Consensus       105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~  183 (429)
T cd00256         105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVL  183 (429)
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHH
Confidence            9999999999999999999999998754432111111113345556666433456777788999999996 445678989


Q ss_pred             cCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          149 RDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       149 ~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+|++.|+.+|+..  +..++=++++++--|.-+.+ ....+...|+|+.|+.+++..  .-.++...++.+|.|++..+
T Consensus       184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nll~~~  260 (429)
T cd00256         184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNLISKR  260 (429)
T ss_pred             ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhcc
Confidence            99999999999874  56788888888887765543 666777889999999999975  24678888888999999754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=98.65  E-value=7.8e-07  Score=79.59  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhC-------------------CH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQN-------------------NP   97 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~n-------------------n~   97 (285)
                      ...+..|.+.|..+-.... .    ..-.++.|..+ ++.+++.||..|+.+||.+...                   ++
T Consensus        68 ~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~  142 (280)
T PRK09687         68 PIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKST  142 (280)
T ss_pred             HHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCH
Confidence            3556666666666533211 0    01135667665 6678888888888888887432                   22


Q ss_pred             HHHHHHHh-------cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHH
Q psy355           98 FSQNFIIQ-------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS  170 (285)
Q Consensus        98 ~~q~~v~~-------~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka  170 (285)
                      .++..++.       ..+++.|+.+|.. ++..||..|+++|+.+..+++         ..++.|+..|.+.+..||..|
T Consensus       143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A  212 (280)
T PRK09687        143 NVRFAVAFALSVINDEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEA  212 (280)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHH
Confidence            33333322       1367888888884 667888888888888722222         356789999999999999999


Q ss_pred             HHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       171 ~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +++|..+-.  +         .++++|++.|..+   +  ++..+..+|..+-
T Consensus       213 ~~aLg~~~~--~---------~av~~Li~~L~~~---~--~~~~a~~ALg~ig  249 (280)
T PRK09687        213 IIGLALRKD--K---------RVLSVLIKELKKG---T--VGDLIIEAAGELG  249 (280)
T ss_pred             HHHHHccCC--h---------hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence            999987522  2         5899999999976   5  6677888887764

>PF05536 Neurochondrin: Neurochondrin

Probab=98.53  E-value=8.9e-06  Score=79.19  Aligned_cols=197  Identities=17%  Similarity=0.149  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch-HH---HHHHcCCHHHHHhhhcC-------CCHHHHHHHHHH
Q psy355           20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY-AN---DFLKMGGLPVLQPLLEG-------SDPELRWRAAET   88 (285)
Q Consensus        20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn-a~---~~~~~Gg~~~Lv~lL~s-------~~~~vr~~A~~~   88 (285)
                      ..+.+++++..|+...  |++|..+|--+..++...|. +.   .+.+.=|++.+-+||.+       +....+.-|..+
T Consensus         3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            4567999999999987  68999999999999987652 11   24455568899999997       456889999999


Q ss_pred             HHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHH
Q psy355           89 VADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVI  168 (285)
Q Consensus        89 lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~  168 (285)
                      |+..++ .|.....--=.+-+|.|+..+.+.++..+...|+..|..++ .++...+.|++.|+++.|.+.+.+ .+..+.
T Consensus        81 L~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E  157 (543)
T PF05536_consen   81 LAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQME  157 (543)
T ss_pred             HHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence            999998 55543221113579999999987555588999999999999 788899999999999999999987 666778


Q ss_pred             HHHHHHHHHhcCCc-----hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          169 KSCFLIACLCTDNN-----QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       169 ka~~~l~~L~~~~~-----~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .|..++.+++....     .....+.  .+++.+.......   ....+-.++..|..++...
T Consensus       158 ~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~---~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  158 IALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSF---HGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhh---ccchHHHHHHHHHHhcCcC
Confidence            89999998887532     1111111  2344555555444   4444445555565555555

>KOG4500|consensus

Probab=98.52  E-value=3.8e-06  Score=77.38  Aligned_cols=149  Identities=15%  Similarity=0.233  Sum_probs=121.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH----hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355           75 EGSDPELRWRAAETVADIVQNNPFSQNFII----QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD  150 (285)
Q Consensus        75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~----~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~  150 (285)
                      ...+..|+..+..+++.++. |+..+..|.    ..|++.+|.+..++ ++..+-...+.||+|+|..+..+..+|.+.|
T Consensus        52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg  129 (604)
T KOG4500|consen   52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLG  129 (604)
T ss_pred             eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence            34577889999999999984 565555554    45778888888886 4789999999999999999999999999999


Q ss_pred             cHHHHHHhhccC-------cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          151 GFSVLLRCIQSK-------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       151 gi~~L~~~L~~~-------~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      |-+++++.|+..       ..+.-.-++.++.|-..++.+.+..+.+.|+++.|..++.-+ -++....|..+-...+++
T Consensus       130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~-~qNaa~~e~ll~~f~nll  208 (604)
T KOG4500|consen  130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWID-WQNAALTEKLLAPFFNLL  208 (604)
T ss_pred             CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcc-cccHHHHHHHHhccccHH
Confidence            988888888742       357778888899999899999999999999999999988765 235567788877777766


Q ss_pred             hcC
Q psy355          224 KDS  226 (285)
Q Consensus       224 ~~~  226 (285)
                      +.-
T Consensus       209 s~~  211 (604)
T KOG4500|consen  209 SFV  211 (604)
T ss_pred             HHH
Confidence            544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.49  E-value=1e-06  Score=76.19  Aligned_cols=189  Identities=16%  Similarity=0.190  Sum_probs=122.3

Q ss_pred             hccCCCHHHHHHHHHHHHHhhcCc---chHHHHHH-c-CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355           32 KENQDQKDICIGALDNLSDYVCSI---DYANDFLK-M-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT  106 (285)
Q Consensus        32 ~~~~~~~~~~~~al~~L~~lv~~~---dna~~~~~-~-Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~  106 (285)
                      ...+.+=+.+..|+..|..++...   +....|.. + ..+..+...+.+....|...|+.+++.++..-...-+.. -.
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~   93 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD   93 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence            333444588999999999998654   33444422 1 344677778888889999999999999997432222112 23


Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc---h
Q psy355          107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---Q  183 (285)
Q Consensus       107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~---~  183 (285)
                      ..+|.|++.+.+ +...++..|..+|-.++.+.+... .++    ++.+...+.+.++.+|..++-.+..++...+   .
T Consensus        94 ~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~-~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP-KIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH-HHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            488999999996 567999999999999999876211 121    4566778889999999999999999887755   2


Q ss_pred             HHH-HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          184 VKQ-VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       184 ~~~-~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      ... ...-..+++.+..++..+   ++++|+.|-.++..+.+..|+..
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hhcccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCHhh
Confidence            211 111134778889999988   99999999999999988777543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1293|consensus

Probab=98.48  E-value=1.2e-05  Score=77.46  Aligned_cols=150  Identities=13%  Similarity=0.157  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHh---hcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           39 DICIGALDNLSDY---VCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~l---v~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +....|+.-+..+   |...++.  +-...|..+|+++|.-|+..|+..++.+|.|++-.-...+..++..|++..+..+
T Consensus       392 ~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~  469 (678)
T KOG1293|consen  392 DFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM  469 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence            4444555444443   3333433  6777899999999988999999999999999998777789999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhH-HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECL-KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM  191 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~-~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~  191 (285)
                      +.+ .+.++|.+++|+|-++.-+..... .++...=+-+.+..+..+++..||..+..+++||+.+..+...++++.
T Consensus       470 ~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~  545 (678)
T KOG1293|consen  470 LTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK  545 (678)
T ss_pred             hcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence            996 778999999999999998876543 334444467788888999999999999999999999877777877764

>KOG0946|consensus

Probab=98.47  E-value=2.1e-05  Score=77.10  Aligned_cols=183  Identities=19%  Similarity=0.236  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc------h-----------HHHHHHcC-CHHHHHhhhcCCCHHHH
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID------Y-----------ANDFLKMG-GLPVLQPLLEGSDPELR   82 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d------n-----------a~~~~~~G-g~~~Lv~lL~s~~~~vr   82 (285)
                      +..|+-.+.+|...-.+.+...-+|+.+.-++..-|      +           |..|++.- -+..|+.++...+-.||
T Consensus        60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR  139 (970)
T KOG0946|consen   60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR  139 (970)
T ss_pred             HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence            556888888888877767778888888888764432      2           44466654 45677789999999999


Q ss_pred             HHHHHHHHHHhhCCH-HHHHHHHhc-CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355           83 WRAAETVADIVQNNP-FSQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ  160 (285)
Q Consensus        83 ~~A~~~lg~~a~nn~-~~q~~v~~~-g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~  160 (285)
                      .+|...|.++..+-| +.|++++.. -++..|+.+|.. ..+.+|-.+++-|+.++++++..++-+.=.|.+.-|..++.
T Consensus       140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe  218 (970)
T KOG0946|consen  140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE  218 (970)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999877654 577777665 588999999995 56789999999999999999998877777899999999987


Q ss_pred             cC----cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355          161 SK----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       161 ~~----~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      ..    ..-|...+..++-||+..+.+.+..+.+.+.|+.|.++|..+
T Consensus       219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f  266 (970)
T KOG0946|consen  219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVF  266 (970)
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcc
Confidence            52    347888999999999999999999999999999999999876

>KOG2122|consensus

Probab=98.47  E-value=2.1e-06  Score=88.30  Aligned_cols=227  Identities=14%  Similarity=0.173  Sum_probs=163.6

Q ss_pred             CHHhHHHHHHHHHHhc---CCH--HHHHHHHHHHHhccC-------------------CCH-HHHHHHHHHHHHhhcCcc
Q psy355            2 NEANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQ-------------------DQK-DICIGALDNLSDYVCSID   56 (285)
Q Consensus         2 ~~e~~~~L~~al~~~~---~d~--~~~mk~~l~~l~~~~-------------------~~~-~~~~~al~~L~~lv~~~d   56 (285)
                      ++|.|+.+-+||-.+.   +|+  ..+.++.+..|...-                   .++ ..+..|+-.|..+.=+-+
T Consensus       251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEE  330 (2195)
T KOG2122|consen  251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEE  330 (2195)
T ss_pred             hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHH
Confidence            4677888888888885   333  333444444443111                   112 345578888877776667


Q ss_pred             hHHHHHHcCCHHHHHhhhc-----CC-------CHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHHHHhhccC----
Q psy355           57 YANDFLKMGGLPVLQPLLE-----GS-------DPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHD----  119 (285)
Q Consensus        57 na~~~~~~Gg~~~Lv~lL~-----s~-------~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L~~LL~~~----  119 (285)
                      +-..++.+||+..+-.||.     +.       ...+|..|+.+|.|+.=+...++..+. ..|++..+|..|.++    
T Consensus       331 hR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL  410 (2195)
T KOG2122|consen  331 HRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL  410 (2195)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH
Confidence            8888999999999888776     22       347999999999998766554443332 235555555444432    


Q ss_pred             ---------------------------------------CCHHHHHHHHHHHHHHhhCChHhHHHHHhc-CcHHHHHHhh
Q psy355          120 ---------------------------------------SNTTVQVKSLYAVSCLVRDNEECLKEFIKR-DGFSVLLRCI  159 (285)
Q Consensus       120 ---------------------------------------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~-~gi~~L~~~L  159 (285)
                                                             ..+...+..+.||.||..|+..+...|+.. |.+.+|+..|
T Consensus       411 ~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L  490 (2195)
T KOG2122|consen  411 LQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL  490 (2195)
T ss_pred             HHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence                                                   222345567889999999999988899985 5689999999


Q ss_pred             ccC----cHHHHHHHHHHHHHHhc---CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          160 QSK----KEKLVIKSCFLIACLCT---DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       160 ~~~----~~~v~~ka~~~l~~L~~---~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      ...    ..++...|-.+|.|..+   ....+++.+.+.+++..|+..|++.   .-.+...++.+||||...+|+.++
T Consensus       491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~DQq  566 (2195)
T KOG2122|consen  491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPEDQQ  566 (2195)
T ss_pred             cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHHHHH
Confidence            853    46777788888777644   3668999999999999999999998   999999999999999999986544

>PTZ00429 beta-adaptin; Provisional

Probab=98.44  E-value=0.00014  Score=73.07  Aligned_cols=180  Identities=14%  Similarity=0.147  Sum_probs=137.2

Q ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355           19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      ++...+++.+   ...  +...+..|+..+..+. -..|...      +++-+++++.+++.++|.-..-.+.+.+..+|
T Consensus        32 ge~~ELr~~L---~s~--~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p  100 (746)
T PTZ00429         32 GEGAELQNDL---NGT--DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQP  100 (746)
T ss_pred             chHHHHHHHH---HCC--CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh
Confidence            3455555444   222  3567778877666554 4444433      47888899999999999999999999998888


Q ss_pred             HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355           98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus        98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      ...-.     ++..|.+=+.+ +++.+|.-|+.++|+|--  +.-.+     -.++.+.+++.+.++-||++|+.++..+
T Consensus       101 elalL-----aINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kl  167 (746)
T PTZ00429        101 EKALL-----AVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKL  167 (746)
T ss_pred             HHHHH-----HHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            64322     46667777775 789999999999999732  33222     2356788999999999999999999999


Q ss_pred             hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ...+|+   .+.+.|+++.|..+|...   ++.+...|+.+|..|...+|.
T Consensus       168 y~~~pe---lv~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~  212 (746)
T PTZ00429        168 FHDDMQ---LFYQQDFKKDLVELLNDN---NPVVASNAAAIVCEVNDYGSE  212 (746)
T ss_pred             HhhCcc---cccccchHHHHHHHhcCC---CccHHHHHHHHHHHHHHhCch
Confidence            887774   345678999999999888   999999999999999877654

>KOG0946|consensus

Probab=98.44  E-value=8.3e-06  Score=79.84  Aligned_cols=217  Identities=19%  Similarity=0.266  Sum_probs=161.8

Q ss_pred             HHHHHHHHHhc-----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCH
Q psy355            7 GFLLDALNSMM-----VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDP   79 (285)
Q Consensus         7 ~~L~~al~~~~-----~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~   79 (285)
                      .|+++.+.-..     .+..+.+.+..+-+.+.- -.++|..|+..|.-+....   +.-+..-|+++|+..|+.  .++
T Consensus         2 di~~~~~~g~~q~~k~~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~   77 (970)
T KOG0946|consen    2 DIFRGSYNGGQQPPKQQSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDP   77 (970)
T ss_pred             chhhhcccccCCCCccccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCH
Confidence            35555553332     233444444444333321 1477777777777766432   234556789999998875  689


Q ss_pred             HHHHHHHHHHHHHhhCCH--------H--------HHHHHHh-cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355           80 ELRWRAAETVADIVQNNP--------F--------SQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC  142 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~--------~--------~q~~v~~-~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~  142 (285)
                      ++...|+.++.++..+.+        .        ..+.+++ .+.+..|+..+.. .+-.||..++--|+++.+.-|..
T Consensus        78 E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e  156 (970)
T KOG0946|consen   78 EIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTE  156 (970)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHH
Confidence            999999999999988753        1        2334443 4788899999997 67899999999999998876664


Q ss_pred             -HHHHHhcC-cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCC-ccHHHHHHHHH
Q psy355          143 -LKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD-TEMNEHLLSAL  219 (285)
Q Consensus       143 -~~~f~~~~-gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d-~~~~e~al~aL  219 (285)
                       ++.++... |++.++.+|.+...-+|-.|..+|..|+.+++++++.+.=.++++.|..++...-..| --+.+-|+..|
T Consensus       157 ~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll  236 (970)
T KOG0946|consen  157 LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILL  236 (970)
T ss_pred             HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence             44455544 9999999999999999999999999999999999999988899999999998751112 35789999999


Q ss_pred             HHHHhcChH
Q psy355          220 ASLIKDSTE  228 (285)
Q Consensus       220 ~~l~~~~~~  228 (285)
                      .+|++.+..
T Consensus       237 ~NLLK~N~S  245 (970)
T KOG0946|consen  237 NNLLKNNIS  245 (970)
T ss_pred             HHHHhhCcc
Confidence            999998853

>KOG2171|consensus

Probab=98.44  E-value=1.6e-05  Score=80.72  Aligned_cols=153  Identities=15%  Similarity=0.217  Sum_probs=119.5

Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      .+-.+|+|++..-|..|+.+|+.++.|.+..-...+ ..+++..++.|. ++++-||-.||.||+-+..+..+-.+....
T Consensus       352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~  429 (1075)
T KOG2171|consen  352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHH  429 (1075)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence            344578899999999999999999998765433322 246777778888 488999999999999999999888888887


Q ss_pred             cCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCc--hHHHHHHHCCcHH-HHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          149 RDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVE-QMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       149 ~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~--~~~~~l~~~g~v~-~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      .-.++.|+..+.+. +.+++..|+.++-|+....+  ....++=  +++. .+..++.++   .+.++|.++.+|..++.
T Consensus       430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~---~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSS---KPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence            88888999999886 68999999999999987633  2222322  4555 344455555   89999999999999997


Q ss_pred             cChH
Q psy355          225 DSTE  228 (285)
Q Consensus       225 ~~~~  228 (285)
                      ....
T Consensus       505 AA~~  508 (1075)
T KOG2171|consen  505 AAQE  508 (1075)
T ss_pred             HHhh
Confidence            7754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.42  E-value=6.3e-07  Score=56.15  Aligned_cols=41  Identities=12%  Similarity=0.285  Sum_probs=37.8

Q ss_pred             ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      ++.+.+.+++.||++.|+.+|++++.++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46678899999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=9.7e-06  Score=78.42  Aligned_cols=171  Identities=17%  Similarity=0.192  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      ..|.-+.-.+..+.+.-..   ...+ .+..+.+-|+|+++.+|..|+++|++++  ++...+.     ++|.+.+++.+
T Consensus        57 ~~Krl~yl~l~~~~~~~~~---~~~l-~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~  125 (526)
T PF01602_consen   57 ELKRLGYLYLSLYLHEDPE---LLIL-IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSD  125 (526)
T ss_dssp             HHHHHHHHHHHHHTTTSHH---HHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcchh---HHHH-HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcC
Confidence            4444444444544443222   1111 4677888899999999999999999998  5654443     58889999996


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  198 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~  198 (285)
                       +++-||++|+.++..+.+.+|.....   . -++.+..+|.++++.++..|+.++..+ ..++.....++ ...+..|.
T Consensus       126 -~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~  198 (526)
T PF01602_consen  126 -PSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILC  198 (526)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhh
Confidence             67899999999999999988775432   1 378899999999999999999999998 33332211111 24556666


Q ss_pred             HhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          199 VLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      .++..+   ++-.+..+++.|..+....+...
T Consensus       199 ~~l~~~---~~~~q~~il~~l~~~~~~~~~~~  227 (526)
T PF01602_consen  199 QLLSDP---DPWLQIKILRLLRRYAPMEPEDA  227 (526)
T ss_dssp             HHHTCC---SHHHHHHHHHHHTTSTSSSHHHH
T ss_pred             hccccc---chHHHHHHHHHHHhcccCChhhh
Confidence            777777   88888888888888777665433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.41  E-value=5.8e-07  Score=59.98  Aligned_cols=55  Identities=18%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355           79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL  135 (285)
Q Consensus        79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l  135 (285)
                      |.||..|+++||++++..+...+. ....++|.|+.+|++ +++.||..|+|||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            579999999999999988876655 445699999999986 5679999999999986

...

>KOG0168|consensus

Probab=98.41  E-value=1.5e-05  Score=78.60  Aligned_cols=232  Identities=13%  Similarity=0.107  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      .+-+..|...|.++++-.... ...+..|++|.|+. |+.=..-+|-++++.+|-.|.+.+|.   +++++|++...+..
T Consensus       226 ~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsy  302 (1051)
T KOG0168|consen  226 FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSY  302 (1051)
T ss_pred             HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHH
Confidence            467788888888888775433 34688999999986 77789999999999999999998875   79999999999888


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHHHC
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSM  191 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~  191 (285)
                      |+- -+..+++.|+...+|+|..-++ ...-|  ...+|.|..+|+..+.+....++-++..++.+   .|+..+.+.+.
T Consensus       303 lDF-FSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~  379 (1051)
T KOG0168|consen  303 LDF-FSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH  379 (1051)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence            874 3468999999999999987443 44434  46899999999999999999999999988765   67888999999


Q ss_pred             CcHHHHHHhcccC-CCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc-----cChH-----hhHHH
Q psy355          192 GMVEQMCVLIDIE-DALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH-----AGNE-----VYHKE  260 (285)
Q Consensus       192 g~v~~L~~lL~~~-~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l-----~~~~-----e~~~~  260 (285)
                      |.|....+||... ..-+..+..-..++|..+..++|-..+.-  ..+++.+.|.+.+.--     ..++     --.+.
T Consensus       380 dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl--~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel  457 (1051)
T KOG0168|consen  380 DLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTL--LKLDIADTLKRILQGYSKSANASLHELLSRSPNEL  457 (1051)
T ss_pred             hHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHH--HHhhHHHHHHHHHhccCcCcccccccccccCcHHH
Confidence            9999999998875 11223455667788888888887543311  1123334444332200     0011     13456


Q ss_pred             HHHHHHHHHHhcCCCCc
Q psy355          261 LEHVNSVLTEVFEEDSL  277 (285)
Q Consensus       261 ~~~~~~il~~~f~~~~~  277 (285)
                      |+.-..+++..|--+.+
T Consensus       458 ~e~~sl~~eLlp~~p~e  474 (1051)
T KOG0168|consen  458 YELTSLIIELLPCLPVE  474 (1051)
T ss_pred             HHHHHHHheeecCCccc
Confidence            66666666666655443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.40  E-value=1e-06  Score=64.26  Aligned_cols=86  Identities=19%  Similarity=0.357  Sum_probs=68.7

Q ss_pred             HHHHHhhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           67 LPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        67 ~~~Lv~lL-~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      +|.|++.| +++++.+|..|+++||.+-  ++         .++|.|+.++++ +++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKD-EDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence            57899988 8899999999999999542  22         359999999975 78999999999999872         


Q ss_pred             HHhcCcHHHHHHhhccC-cHHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIA  175 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~  175 (285)
                        ....++.|.+.+.++ +..+|..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              123677888988876 5667888888764

>KOG2171|consensus

Probab=98.39  E-value=0.00011  Score=74.95  Aligned_cols=194  Identities=14%  Similarity=0.124  Sum_probs=136.6

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcC------CHHHHHhhhcC--CC--------------HHHHHH
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMG------GLPVLQPLLEG--SD--------------PELRWR   84 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~G------g~~~Lv~lL~s--~~--------------~~vr~~   84 (285)
                      .+++..+.+-++..|..||+-|-.+++.   |-..++.-      -++.++.+..-  .+              ..--..
T Consensus       252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~  328 (1075)
T KOG2171|consen  252 SLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRA  328 (1075)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHH
Confidence            3445566666678899999999999876   44443322      23344444331  11              124456


Q ss_pred             HHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcH
Q psy355           85 AAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKE  164 (285)
Q Consensus        85 A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~  164 (285)
                      |.++|-.++.+=+.-+-   -.-.++.+-.+|.+ ++..-|..|+.|||.++-|++.....-+ -..++.++.+|+++++
T Consensus       329 A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp  403 (1075)
T KOG2171|consen  329 AEQALDRLALHLGGKQV---LPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP  403 (1075)
T ss_pred             HHHHHHHHHhcCChhhe---hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH
Confidence            66677666655332111   01244555566775 6789999999999999999988776644 4578888999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      +||-.|+.+|+-+.+.-....+.-...-+++.|+..+.++  +++.++.+|..+|.+....++...
T Consensus       404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~--~~~rV~ahAa~al~nf~E~~~~~~  467 (1075)
T KOG2171|consen  404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST--QNVRVQAHAAAALVNFSEECDKSI  467 (1075)
T ss_pred             HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc--CchHHHHHHHHHHHHHHHhCcHHH
Confidence            9999999999999888444444444456778999999887  467999999999999999997543

>KOG2122|consensus

Probab=98.38  E-value=3.2e-06  Score=87.08  Aligned_cols=185  Identities=16%  Similarity=0.173  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCcHHHHHHhhc
Q psy355           40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLTSIE  117 (285)
Q Consensus        40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~l~~L~~LL~  117 (285)
                      .....|.+|.+-.+ +.....|...|-+..|+.+ |......-....+.+|-|++.+..+++..|.. -|++.-|+.+|.
T Consensus       413 V~AsvLRNLSWRAD-~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LS  491 (2195)
T KOG2122|consen  413 VYASVLRNLSWRAD-SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLS  491 (2195)
T ss_pred             HHHHHHHhcccccc-ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcc
Confidence            34445566666553 4677789999999999986 55555455566677777777666666666654 499999999998


Q ss_pred             cCC---CHHHHHHH---HHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355          118 HDS---NTTVQVKS---LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM  191 (285)
Q Consensus       118 ~~~---~~~v~~~a---~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~  191 (285)
                      -+.   ...+...|   +.-+|.++..+.+-.+...+++-+..|++.|++.+..+..++|..|.||...+|..++++.+.
T Consensus       492 Y~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~  571 (2195)
T KOG2122|consen  492 YEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD  571 (2195)
T ss_pred             ccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc
Confidence            531   12333333   344566777777777778889999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      |+|+.|-+|+.+.   +..+.+-+..+|.|++..-|.
T Consensus       572 gAv~mLrnLIhSK---hkMIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  572 GAVPMLRNLIHSK---HKMIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             ccHHHHHHHHhhh---hhhhhhhHHHHHHHHhcCCch
Confidence            9999999999998   888999999999999988864

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.34  E-value=5.4e-05  Score=73.25  Aligned_cols=175  Identities=14%  Similarity=0.108  Sum_probs=134.3

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT  106 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~  106 (285)
                      .-+.+++...+...+..++..|.++.-.-.   ++-  -|++.+++++.+.+..++.-+--++..+...++...-.    
T Consensus         9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~---~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----   79 (526)
T PF01602_consen    9 LAKILNSFKIDISKKKEALKKLIYLMMLGY---DIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----   79 (526)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHHHHTT------G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---CCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----
Confidence            334444443345788888888888754322   211  68999999999999999999999999999999873222    


Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355          107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ  186 (285)
Q Consensus       107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~  186 (285)
                       ++..+.+=|.+ +++.+|.-|+.+||++.  ++.-.+.     .++.+.+++.++++-||++|+.++..+....|+...
T Consensus        80 -~~n~l~kdl~~-~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 -IINSLQKDLNS-PNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             -HHHHHHHHHCS-SSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             -HHHHHHHhhcC-CCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence             56667777776 78999999999999986  4444433     368889999999999999999999999988775432


Q ss_pred             HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                         .. +++.+..+|..+   ++.++..|+.++..+ +.++
T Consensus       151 ---~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~i-~~~~  183 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDK---DPSVVSAALSLLSEI-KCND  183 (526)
T ss_dssp             ---GG-HHHHHHHHTTHS---SHHHHHHHHHHHHHH-HCTH
T ss_pred             ---HH-HHHHHhhhccCC---cchhHHHHHHHHHHH-ccCc
Confidence               22 689999999888   899999999999998 4444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.34  E-value=5.3e-05  Score=78.27  Aligned_cols=132  Identities=10%  Similarity=0.046  Sum_probs=89.9

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHh----------hCCHHHHHHHHhc---------CcHHHHHHhhccCCCHHHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIV----------QNNPFSQNFIIQT---------DFLNLLLTSIEHDSNTTVQV  126 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a----------~nn~~~q~~v~~~---------g~l~~L~~LL~~~~~~~v~~  126 (285)
                      ....|+..|.++++.||..|+++|+.+-          ..++.++..+.+.         +.++.|..++.. +++.||.
T Consensus       715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D-~d~~VR~  793 (897)
T PRK13800        715 DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGD-PDPLVRA  793 (897)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcC-CCHHHHH
Confidence            4456667777778888888887777541          1233444333321         235777777774 5678888


Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCC
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA  206 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~  206 (285)
                      .|+.+|+.+-  .+..        .++.++..|++++..||..|+++|..+-.           ...++.|+.+|+.+  
T Consensus       794 aA~~aLg~~g--~~~~--------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~--  850 (897)
T PRK13800        794 AALAALAELG--CPPD--------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP--  850 (897)
T ss_pred             HHHHHHHhcC--Ccch--------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC--
Confidence            8888887762  2211        12456778888888888888888876532           23568899999988  


Q ss_pred             CCccHHHHHHHHHHHH
Q psy355          207 LDTEMNEHLLSALASL  222 (285)
Q Consensus       207 ~d~~~~e~al~aL~~l  222 (285)
                       +..+|..|+.+|..+
T Consensus       851 -~~~VR~~A~~aL~~~  865 (897)
T PRK13800        851 -HLDVRKAAVLALTRW  865 (897)
T ss_pred             -CHHHHHHHHHHHhcc
Confidence             999999999999886

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=98.33  E-value=1.4e-05  Score=70.00  Aligned_cols=103  Identities=18%  Similarity=0.279  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHH
Q psy355           78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR  157 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~  157 (285)
                      ...+...|+++|--++-.+|.++..+.+..++..|+++|+...++.++..++.+|.++..++|.++..|-+.+|+..+..
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            34567789999999999999999999999999999999976567899999999999999999999999999999999999


Q ss_pred             hhccC--cHHHHHHHHHHHHHHhcC
Q psy355          158 CIQSK--KEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       158 ~L~~~--~~~v~~ka~~~l~~L~~~  180 (285)
                      ++++.  +..+|-|..-++.-.+..
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHcc
Confidence            99975  688988888777655443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.32  E-value=3.1e-05  Score=70.41  Aligned_cols=173  Identities=18%  Similarity=0.217  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  114 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~  114 (285)
                      -....|+..|..++..-+....-...+.++.++..|.+    ++.+++..|+.+++++.. ++..+..+.+.|+++.|..
T Consensus       120 ~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~  198 (312)
T PF03224_consen  120 FIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFD  198 (312)
T ss_dssp             HHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHH
Confidence            44556777777776554333332223556777777664    566788999999999995 6778999999999999999


Q ss_pred             hh------ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCch-HHH
Q psy355          115 SI------EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQ-VKQ  186 (285)
Q Consensus       115 LL------~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~-~~~  186 (285)
                      ++      .+..+..++..++.++--++- ++.....+...+-++.|+++++.. ..|+.+-+..++.|++...+. ...
T Consensus       199 iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~  277 (312)
T PF03224_consen  199 ILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIE  277 (312)
T ss_dssp             HHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             HHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHH
Confidence            99      444567888899999998877 466677888888999999999975 699999999999999988664 788


Q ss_pred             HHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355          187 VLLSMGMVEQMCVLIDIEDALDTEMNEH  214 (285)
Q Consensus       187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~  214 (285)
                      .++..|+++.+-.+.... =.|+++.+-
T Consensus       278 ~mv~~~~l~~l~~L~~rk-~~Dedl~ed  304 (312)
T PF03224_consen  278 LMVLCGLLKTLQNLSERK-WSDEDLTED  304 (312)
T ss_dssp             HHHHH-HHHHHHHHHSS---SSHHHHHH
T ss_pred             HHHHccHHHHHHHHhcCC-CCCHHHHHH
Confidence            888888887776655543 246666654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678|consensus

Probab=98.30  E-value=1e-05  Score=75.40  Aligned_cols=160  Identities=14%  Similarity=0.206  Sum_probs=134.0

Q ss_pred             HHHcCCHHHHHhhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355           61 FLKMGGLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        61 ~~~~Gg~~~Lv~lL~s~~~--~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      +..-||+..|++++.+|+.  .||..|+++|..|..  ..+.+.+..-| +..++.+-+....+...+..+..|.++-+|
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            3346899999999999875  569999999998874  34567777776 666666666555678899999999999999


Q ss_pred             ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355          139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS  217 (285)
Q Consensus       139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~  217 (285)
                      +....+.++..||+..++--.+..++.+.+.++.++.|.+-. .-..++.+++..+-+.|..+-.+.   |.-+|-+|.-
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk---Del~R~~ACl  329 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK---DELLRLHACL  329 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch---HHHHHHHHHH
Confidence            998889999999999999889999999999999999987654 667889999999999998887777   8888889988


Q ss_pred             HHHHHHhcC
Q psy355          218 ALASLIKDS  226 (285)
Q Consensus       218 aL~~l~~~~  226 (285)
                      ++..|+...
T Consensus       330 AV~vlat~K  338 (832)
T KOG3678|consen  330 AVAVLATNK  338 (832)
T ss_pred             HHhhhhhhh
Confidence            888877655

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.28  E-value=5.8e-05  Score=77.98  Aligned_cols=129  Identities=15%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh---------C
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR---------D  138 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r---------~  138 (285)
                      +.|...|+++++.||..|+.+|+.+..            +-.+.|+..|.. ++..+|..|+.+|+.+-.         +
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D-~d~~VR~~Av~aL~~~~~~~~l~~~l~D  753 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGD-PDHRVRIEAVRALVSVDDVESVAGAATD  753 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcC-CCHHHHHHHHHHHhcccCcHHHHHHhcC
Confidence            345555666666666666666655432            122345556653 566777777777765410         0


Q ss_pred             -ChHhHH----HHHh-----cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCC
Q psy355          139 -NEECLK----EFIK-----RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD  208 (285)
Q Consensus       139 -~~~~~~----~f~~-----~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d  208 (285)
                       ++....    .+..     ...++.|..+++++++.+|..|+.+|..+-...          ..+..+...|..+   +
T Consensus       754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~---d  820 (897)
T PRK13800        754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS---A  820 (897)
T ss_pred             CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC---C
Confidence             000000    0111     012455556666666666666666665542211          1224566666666   6


Q ss_pred             ccHHHHHHHHHHHH
Q psy355          209 TEMNEHLLSALASL  222 (285)
Q Consensus       209 ~~~~e~al~aL~~l  222 (285)
                      ..+|..|+.+|..+
T Consensus       821 ~~VR~~Aa~aL~~l  834 (897)
T PRK13800        821 WQVRQGAARALAGA  834 (897)
T ss_pred             hHHHHHHHHHHHhc
Confidence            77777777777655

>KOG4500|consensus

Probab=98.27  E-value=1.6e-05  Score=73.32  Aligned_cols=164  Identities=11%  Similarity=0.092  Sum_probs=124.2

Q ss_pred             HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC------CCHHHHHHHHHHHHHH
Q psy355           62 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCL  135 (285)
Q Consensus        62 ~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l  135 (285)
                      +..|.+.+|....+|++.+|-.+.++++||+|-.|.+.+.++.+.|+-..+++.|+..      .+...-+-++.-|+|.
T Consensus        84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny  163 (604)
T KOG4500|consen   84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY  163 (604)
T ss_pred             hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence            3467788888899999999999999999999999999999999999988777777642      1235566778889999


Q ss_pred             hhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHH
Q psy355          136 VRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN  212 (285)
Q Consensus       136 ~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~  212 (285)
                      +-++..-+..+++.|.++.|...+.-+  +..+..+......+|++- .........+...+..++++|.+.  ..++++
T Consensus       164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~--v~~d~~  241 (604)
T KOG4500|consen  164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM--VREDID  241 (604)
T ss_pred             hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh--hccchh
Confidence            999999888999999999888876543  444444444433444331 112334455667788888888875  368899


Q ss_pred             HHHHHHHHHHHhcCh
Q psy355          213 EHLLSALASLIKDST  227 (285)
Q Consensus       213 e~al~aL~~l~~~~~  227 (285)
                      |.+...|...+.++.
T Consensus       242 eM~feila~~aend~  256 (604)
T KOG4500|consen  242 EMIFEILAKAAENDL  256 (604)
T ss_pred             hHHHHHHHHHhcCcc
Confidence            999999988887764

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=98.26  E-value=7.5e-06  Score=61.62  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355           81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFI  147 (285)
Q Consensus        81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~  147 (285)
                      +|....++|||++-+|+.+|+.+.+.|++|.+++...- +.++-+|..|+|||-+++.+++.+++.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            46678899999999999999999999999999988654 46799999999999999999999986554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PTZ00429 beta-adaptin; Provisional

Probab=98.15  E-value=0.0011  Score=66.83  Aligned_cols=140  Identities=14%  Similarity=0.094  Sum_probs=107.3

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+..|.+-+++++|-+|..|+++++++-.  +..-+.     +++++.+.+.+ .++-||++|+.|+..+-+.+|.   .
T Consensus       106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pe---l  174 (746)
T PTZ00429        106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQ---L  174 (746)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcc---c
Confidence            36778888899999999999999998763  444443     46677888875 7899999999999999887764   3


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  221 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~  221 (285)
                      +.+.+-++.|..+|.+.++.|+..|..++..+...+|...  -...+.+..|+..|..-   +.-.+-..+.+|..
T Consensus       175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~~  245 (746)
T PTZ00429        175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPEC---NEWGQLYILELLAA  245 (746)
T ss_pred             ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHh
Confidence            4455667889999999999999999999999987766432  23345677788777765   55566666666633

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.12  E-value=7.7e-06  Score=59.55  Aligned_cols=88  Identities=14%  Similarity=0.215  Sum_probs=69.4

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHH
Q psy355          109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL  188 (285)
Q Consensus       109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l  188 (285)
                      ||.|++.|.+++++.+|..|+++|+.+  +.+         ..++.|+.+++++++.+|..|+++++.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            688999996568999999999999954  122         23788899999999999999999999772          


Q ss_pred             HHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355          189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  220 (285)
Q Consensus       189 ~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~  220 (285)
                       ....++.|..++.++  .+..+|..|..+|.
T Consensus        60 -~~~~~~~L~~~l~~~--~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDD--DDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCC--CcHHHHHHHHhhcC
Confidence             234888999999876  14456888888874

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.04  E-value=1e-05  Score=53.92  Aligned_cols=55  Identities=15%  Similarity=0.294  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355          122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus       122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      +.+|..|+|+|++++.+.+...+.+. ...++.|+.+|++++..||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            36899999999999988888776654 67899999999999899999999999875

...

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.02  E-value=0.00074  Score=63.62  Aligned_cols=183  Identities=16%  Similarity=0.229  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~--~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      +-...++.-|..++...+.-..|.+.+|+++|+.+|+..  +..++=.++-+|--++=+ +.........|.+|.|++++
T Consensus       159 ~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~  237 (429)
T cd00256         159 DYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDIL  237 (429)
T ss_pred             chHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHH
Confidence            334455667777777777777899999999999999863  456676777777766654 33555667789999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCCh----H--h------------------------------------------------
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNE----E--C------------------------------------------------  142 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~----~--~------------------------------------------------  142 (285)
                      +....+.|.+-++.++-|++..+.    .  .                                                
T Consensus       238 k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD  317 (429)
T cd00256         238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFD  317 (429)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            987777888888888888876320    0  0                                                


Q ss_pred             --------------------------HHHHHhcC--cHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355          143 --------------------------LKEFIKRD--GFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  193 (285)
Q Consensus       143 --------------------------~~~f~~~~--gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~  193 (285)
                                                ...|-+.+  .+..|+.+|. ++|+.+..-||+=|+.++...|.-+..+-+.|+
T Consensus       318 ~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~  397 (429)
T cd00256         318 EYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG  397 (429)
T ss_pred             HHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCc
Confidence                                      22232222  2345556664 446677777777788888888888888888999


Q ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      =..++.++.++   |++++-.||.|+..|+.+
T Consensus       398 K~~vM~Lm~h~---d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         398 KQRVMRLLNHE---DPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHh
Confidence            89999999999   999999999999888644

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=98.01  E-value=3.9e-05  Score=57.78  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHH
Q psy355          124 VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLS  190 (285)
Q Consensus       124 v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~  190 (285)
                      .|...+..|+|++..++..+..+.+.||+++++....-  .++-+++.|.|+|.+|+.++++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            46778899999999999999999999999999998654  47999999999999999999988776654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4646|consensus

Probab=98.00  E-value=8.1e-05  Score=58.61  Aligned_cols=121  Identities=18%  Similarity=0.236  Sum_probs=101.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHH
Q psy355           74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFS  153 (285)
Q Consensus        74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~  153 (285)
                      -+..+.+-+.+...-|+|.|= +|.+-..+.+.+++..++..|.. +++.++..++.+|+|+|-+ +.+.+-+.+++|+|
T Consensus        26 q~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~p  102 (173)
T KOG4646|consen   26 QTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLD-KTNAKFIREALGLP  102 (173)
T ss_pred             HHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCc
Confidence            345777888888888888884 68888899999999999999996 7889999999999999986 55566777899999


Q ss_pred             HHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          154 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       154 ~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                      .++.+++++...+.-.|+.++..|+..+...+..+..--++..+
T Consensus       103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v  146 (173)
T KOG4646|consen  103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV  146 (173)
T ss_pred             eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence            99999999999999999999999998887777777654444333

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.99  E-value=1.7e-05  Score=49.11  Aligned_cols=39  Identities=28%  Similarity=0.446  Sum_probs=36.1

Q ss_pred             chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355           56 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ   94 (285)
Q Consensus        56 dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~   94 (285)
                      +++..+++.||+++|+++|.+++++++..|+|+|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            477889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.90  E-value=0.00046  Score=56.08  Aligned_cols=128  Identities=15%  Similarity=0.285  Sum_probs=107.1

Q ss_pred             hHHHHHHcCCHHHHHhhhcCCC------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHH
Q psy355           57 YANDFLKMGGLPVLQPLLEGSD------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSL  129 (285)
Q Consensus        57 na~~~~~~Gg~~~Lv~lL~s~~------~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~  129 (285)
                      .|..|++.||++.|++++.++.      .++...++.+.-.+...+ .+....+....+...+..+.... +..+...|+
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            4789999999999999998755      478888999998888765 34445677778888888888644 678999999


Q ss_pred             HHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355          130 YAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK  185 (285)
Q Consensus       130 ~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~  185 (285)
                      .-|=+++-+++...+.+-+.--++-|+..|+.++..+|.+|..++-.|....++.+
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            99999999888877777777789999999999999999999999999988755443

>KOG1241|consensus

Probab=97.87  E-value=0.00084  Score=65.98  Aligned_cols=162  Identities=16%  Similarity=0.208  Sum_probs=113.0

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+|.+-.-+++|+-.-|..|+.+.|.+..+-...+-.-+-.+++|.++++.. +++.-++..+.|+++.++.+.+.....
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n  443 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIIN  443 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhccc
Confidence            3455545678999999999999999999876666666677889999999999 688899999999999999988754322


Q ss_pred             -HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch----H-HHHHHHCCcHHHHH-HhcccC---CCCCccHHHHH
Q psy355          146 -FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ----V-KQVLLSMGMVEQMC-VLIDIE---DALDTEMNEHL  215 (285)
Q Consensus       146 -f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~----~-~~~l~~~g~v~~L~-~lL~~~---~~~d~~~~e~a  215 (285)
                       ..-.+-++.++..|. +.+++-.++||++.+|+..-++    . ...... -+.+.++ .||+..   +-.+..+|..+
T Consensus       444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA  521 (859)
T KOG1241|consen  444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA  521 (859)
T ss_pred             HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence             222334455555553 4689999999999999843110    0 000000 1222222 333333   12356799999


Q ss_pred             HHHHHHHHhcChHHH
Q psy355          216 LSALASLIKDSTEAQ  230 (285)
Q Consensus       216 l~aL~~l~~~~~~~~  230 (285)
                      -.+|..+.+.+|+..
T Consensus       522 YeALmElIk~st~~v  536 (859)
T KOG1241|consen  522 YEALMELIKNSTDDV  536 (859)
T ss_pred             HHHHHHHHHcCcHHH
Confidence            999999999998644

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.87  E-value=2.4e-05  Score=60.44  Aligned_cols=87  Identities=23%  Similarity=0.327  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHH-HcCCHHHHHhhhcCCCHHHHHHHH
Q psy355            8 FLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAA   86 (285)
Q Consensus         8 ~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~-~~Gg~~~Lv~lL~s~~~~vr~~A~   86 (285)
                      |.+.|.+ +..++++.+|..+++|.... +.....-|+.+|.++|.-.++.+.++ +.||=..++.|++|++++||..|+
T Consensus        30 W~ENa~k-f~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL  107 (119)
T PF11698_consen   30 WRENADK-FEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEAL  107 (119)
T ss_dssp             HHHHSGG-GSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHH
T ss_pred             HHHHHHH-HHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHH
Confidence            5555554 45889999999999996555 34667789999999999988888876 566667889999999999999999


Q ss_pred             HHHHHHhhCC
Q psy355           87 ETVADIVQNN   96 (285)
Q Consensus        87 ~~lg~~a~nn   96 (285)
                      .++..+..+|
T Consensus       108 ~avQklm~~~  117 (119)
T PF11698_consen  108 LAVQKLMVNN  117 (119)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            9999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517|consensus

Probab=97.86  E-value=0.00036  Score=70.55  Aligned_cols=171  Identities=14%  Similarity=0.181  Sum_probs=137.7

Q ss_pred             cchHHHHHHcCCHHHHHhhhcC---CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHH
Q psy355           55 IDYANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA  131 (285)
Q Consensus        55 ~dna~~~~~~Gg~~~Lv~lL~s---~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~A  131 (285)
                      .....+++|-+|...++..|..   -+++-|+.||.+|+.++.|-+.-|...++.+.+..-+..|..++.+-+|--++-.
T Consensus       544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic  623 (1387)
T KOG1517|consen  544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC  623 (1387)
T ss_pred             chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence            4567789999999999998875   3569999999999999999999999999999999989999875567899999999


Q ss_pred             HHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC----chHHH------------HHHHCCcH-
Q psy355          132 VSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN----NQVKQ------------VLLSMGMV-  194 (285)
Q Consensus       132 Ls~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~----~~~~~------------~l~~~g~v-  194 (285)
                      |+.+=.+++.++-.=...+....|+.+|+.+.++||..|.|++..++.+.    ++...            .-++.-+. 
T Consensus       624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~  703 (1387)
T KOG1517|consen  624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIK  703 (1387)
T ss_pred             HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHh
Confidence            99999999988766667788999999999999999999999999999863    21111            11222222 


Q ss_pred             --HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          195 --EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       195 --~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                        ..++.+++..   .+-++....-+|..++.++..
T Consensus       704 ~~~~ll~~vsdg---splvr~ev~v~ls~~~~g~~~  736 (1387)
T KOG1517|consen  704 GLMSLLALVSDG---SPLVRTEVVVALSHFVVGYVS  736 (1387)
T ss_pred             hHHHHHHHHhcc---chHHHHHHHHHHHHHHHhhHH
Confidence              2555666666   777887788888888877754

>KOG2759|consensus

Probab=97.82  E-value=0.0018  Score=59.79  Aligned_cols=202  Identities=16%  Similarity=0.205  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCH
Q psy355           20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      +...-+.-++-+.+.+...+-...+..=|..++.-...--.|+...|+..++..|.|  .+-.++=+.+.+|--++= ||
T Consensus       153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~  231 (442)
T KOG2759|consen  153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NP  231 (442)
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CH
Confidence            455555555544444433333444444455555444566678889999999997743  556777777777776664 56


Q ss_pred             HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH------h-----------------------------
Q psy355           98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE------C-----------------------------  142 (285)
Q Consensus        98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~------~-----------------------------  142 (285)
                      ...+.+-..+.++.|..+++++..+.|-+-.+..+-|++-..+.      .                             
T Consensus       232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d  311 (442)
T KOG2759|consen  232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD  311 (442)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence            66677788899999999999876677777777888887765431      1                             


Q ss_pred             ---------------------------------------------HHHHHhcC--cHHHHHHhhccC-cHHHHHHHHHHH
Q psy355          143 ---------------------------------------------LKEFIKRD--GFSVLLRCIQSK-KEKLVIKSCFLI  174 (285)
Q Consensus       143 ---------------------------------------------~~~f~~~~--gi~~L~~~L~~~-~~~v~~ka~~~l  174 (285)
                                                                   ...|.+.+  .+..|+++|+++ |+.+-.-||+=|
T Consensus       312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DI  391 (442)
T KOG2759|consen  312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDI  391 (442)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhH
Confidence                                                         11111111  334566666654 466777777777


Q ss_pred             HHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          175 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       175 ~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      +..++..|.-+..+.+-|+=..++++|.++   |++++-+|+.|+..|..+
T Consensus       392 ge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~---d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  392 GEYVRHYPEGKAVVEKYGGKERVMNLLNHE---DPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHHhCchHhHHHHHhchHHHHHHHhcCC---CchHHHHHHHHHHHHHhh
Confidence            877788888899999999999999999999   999999999999888754

>KOG2759|consensus

Probab=97.81  E-value=0.0074  Score=55.92  Aligned_cols=198  Identities=15%  Similarity=0.169  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHH-HHH------HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHh
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAN-DFL------KMGGLPVLQPLLEGSDPELRWRAAETVADIV   93 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~-~~~------~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a   93 (285)
                      .+..+..+..++.... ++...-.|--+.++...-.... -|+      +--.+.+.+++|.-.++-+...++++|+-++
T Consensus        64 ~~~v~~fi~LlS~~~k-dd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   64 AQYVKTFINLLSHIDK-DDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHHHhchhhh-HHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            3555555555555443 3444445555555543311111 122      2235889999999999999999999999998


Q ss_pred             hCCHHHHHHHHhcCc----HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHH
Q psy355           94 QNNPFSQNFIIQTDF----LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLV  167 (285)
Q Consensus        94 ~nn~~~q~~v~~~g~----l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~  167 (285)
                      ...+.    .++.+.    ...|-.++.++.+......|+.+|..+.|. ++-+-+|..++|+..++..+.++  ++.+|
T Consensus       143 ~~g~~----~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ  217 (442)
T KOG2759|consen  143 CFGNC----KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ  217 (442)
T ss_pred             Hhccc----cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence            85442    111111    223334455444556777888999999996 45567899999999999999443  79999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          168 IKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       168 ~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      =..+|++--|+-+ |...+.+...+.++.|..+++..  .-.++...++.++.|++..+|
T Consensus       218 YqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~--~KEKV~Rivlai~~Nll~k~~  274 (442)
T KOG2759|consen  218 YQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKES--TKEKVTRIVLAIFRNLLDKGP  274 (442)
T ss_pred             HHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCc
Confidence            9999999877654 55668888889999999999875  245677888888999998885

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.79  E-value=6.7e-05  Score=46.31  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355          141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      .....+++.||++.|+.+|++++.+++..|+|+|+||+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35667889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.75  E-value=0.001  Score=61.96  Aligned_cols=185  Identities=14%  Similarity=0.129  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           36 DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        36 ~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      ..+.|++.||.-+..+++-.+ +......|.+..++.+..+++...|..|..+|+.++--||.   .+..+||++.|++.
T Consensus        80 ~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~  155 (371)
T PF14664_consen   80 KNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA  155 (371)
T ss_pred             CChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence            346889999999988876533 33445778889999999999999999999999999999986   67889999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-------cH--HHHHHHHHHHHHHhcCCchHHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-------KE--KLVIKSCFLIACLCTDNNQVKQ  186 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-------~~--~v~~ka~~~l~~L~~~~~~~~~  186 (285)
                      +-. +...+....+.++-.+.- +|...+.+...-.++.++..+.+.       +.  ..-..+..++..+..+=+...-
T Consensus       156 l~d-~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~  233 (371)
T PF14664_consen  156 LID-GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLY  233 (371)
T ss_pred             HHh-ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceee
Confidence            885 344577777777777764 555554444323455555544332       22  3456677888888776443332


Q ss_pred             HHHHC-CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          187 VLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       187 ~l~~~-g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      .-... ..+..|+..|..+   .+++|+..+..+..++.-.+..
T Consensus       234 l~~~~~~~lksLv~~L~~p---~~~ir~~Ildll~dllrik~p~  274 (371)
T PF14664_consen  234 LSMNDFRGLKSLVDSLRLP---NPEIRKAILDLLFDLLRIKPPS  274 (371)
T ss_pred             eecCCchHHHHHHHHHcCC---CHHHHHHHHHHHHHHHCCCCCC
Confidence            22222 5788899999999   9999999999999999877643

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.00018  Score=68.13  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC
Q psy355           83 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK  162 (285)
Q Consensus        83 ~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~  162 (285)
                      ..++.+|-.+...-...+.-+.++.+..+|+++|+. ++..+.-.+..+|+|.+--..+-+..|+..|.+..|+..+.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            445555666666655666667778899999999996 6667788889999999988888888999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          163 KEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       163 ~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      |..+|.+..|.++++.-+. ...+=.++..-.+..++.+...+   +-.+++.++..|.+++-+..
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp---c~~vq~q~lQilrNftc~~~  548 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP---CFKVQHQVLQILRNFTCDTS  548 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc---ccccHHHHHHHHHhcccccc
Confidence            9999999999999998773 33333455566778888998888   99999999999999986443

>PF05536 Neurochondrin: Neurochondrin

Probab=97.65  E-value=0.0041  Score=60.79  Aligned_cols=153  Identities=16%  Similarity=0.204  Sum_probs=122.7

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH---HHHHhcCcHHHHHHhhccC------CCHHHHHHHHHHHHHHhh
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ---NFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q---~~v~~~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l~r  137 (285)
                      +...+.+|++.+.+-|..++-.+..++.+++..+   +.+.+.=+.+-|-+||.+.      +....+.-|+.-|++.++
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            5667788999889999999999999999887433   3466766667777888862      235677888899999988


Q ss_pred             CChHh--HHHHHhcCcHHHHHHhhccCcH-HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355          138 DNEEC--LKEFIKRDGFSVLLRCIQSKKE-KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH  214 (285)
Q Consensus       138 ~~~~~--~~~f~~~~gi~~L~~~L~~~~~-~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~  214 (285)
                      . |..  -..++  +-+|.|++++.+.+. .+...|..+|..++ ..|.-++.+++.|.++.|+..+.+    .+...+.
T Consensus        87 ~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~  158 (543)
T PF05536_consen   87 D-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN----QSFQMEI  158 (543)
T ss_pred             C-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh----CcchHHH
Confidence            3 322  13344  679999999988766 99999999999998 678899999999999999999886    5677899


Q ss_pred             HHHHHHHHHhcCh
Q psy355          215 LLSALASLIKDST  227 (285)
Q Consensus       215 al~aL~~l~~~~~  227 (285)
                      ++..|.+++....
T Consensus       159 Al~lL~~Lls~~~  171 (543)
T PF05536_consen  159 ALNLLLNLLSRLG  171 (543)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887664

>KOG1062|consensus

Probab=97.65  E-value=0.0064  Score=60.29  Aligned_cols=215  Identities=14%  Similarity=0.120  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      +-|+.-|.....|=|..|- --++    ...|.+=|+|++.-|+-.|+.++|+++.  |+...     ...|-.-+++++
T Consensus        86 dKRiGYLaamLlLdE~qdv-llLl----tNslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~  153 (866)
T KOG1062|consen   86 DKRIGYLAAMLLLDERQDL-LLLL----TNSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQH  153 (866)
T ss_pred             HHHHHHHHHHHHhccchHH-HHHH----HHHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhC
Confidence            5666667666665554441 1111    2344455778999999999999999993  44332     257888899998


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  198 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~  198 (285)
                       .++.+|+||+.+.-.++|-.|...+.|+     +....+|...+.-|-.-+..++..+|..+|+...++-+  .++.|+
T Consensus       154 -~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV  225 (866)
T KOG1062|consen  154 -RDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLV  225 (866)
T ss_pred             -CCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHH
Confidence             6889999999999999999998887775     44567777777777778888888888888877777765  555555


Q ss_pred             Hhccc----C--------CCCCccHHHHHHHHHHHHHhcChHHHh--------------hcccCcccHHHHHHHHHHHcc
Q psy355          199 VLIDI----E--------DALDTEMNEHLLSALASLIKDSTEAQS--------------LCRLEPLNLKFKLNFIKEKHA  252 (285)
Q Consensus       199 ~lL~~----~--------~~~d~~~~e~al~aL~~l~~~~~~~~~--------------~~~~~~~~l~~~l~~~~~~l~  252 (285)
                      ..|+.    .        ...||-++-.+|+.|.-+-++.+..-+              .+++-.   -..|.+..+.+.
T Consensus       226 ~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G---nAILYE~V~TI~  302 (866)
T KOG1062|consen  226 KILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG---NAILYECVRTIM  302 (866)
T ss_pred             HHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch---hHHHHHHHHHHH
Confidence            55442    2        134566788888888777766654221              112222   234556666665


Q ss_pred             ChHhhHHHHHHHHHHHHHhcCCCC
Q psy355          253 GNEVYHKELEHVNSVLTEVFEEDS  276 (285)
Q Consensus       253 ~~~e~~~~~~~~~~il~~~f~~~~  276 (285)
                      .-..+..-...+.+||-+|-.-.+
T Consensus       303 ~I~~~~~LrvlainiLgkFL~n~d  326 (866)
T KOG1062|consen  303 DIRSNSGLRVLAINILGKFLLNRD  326 (866)
T ss_pred             hccCCchHHHHHHHHHHHHhcCCc
Confidence            555677777889999988876554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.64  E-value=0.0001  Score=56.92  Aligned_cols=73  Identities=10%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      .++..|+++|..+.++.+..-||+-|+.++|.+|.....+-+.||-..++++|.++++.||..|..++.-+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3788999999665678888899999999999999987766678888999999999999999999999887754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.63  E-value=0.0039  Score=60.41  Aligned_cols=179  Identities=16%  Similarity=0.148  Sum_probs=109.0

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      +..++..-+ +++..+..|+..|......-|..++.     ++..++.|+.. .+..||+.|+-.|..+|++++.....+
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kv   97 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKV   97 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence            344444444 57889999999999999999998876     56779999995 789999999999999999988766655


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .     .+|+++|++++..-..-+-.++..|...+|        .+.+..+...+.+..+++..+||+++..|..-+..-
T Consensus        98 a-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l  164 (556)
T PF05918_consen   98 A-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL  164 (556)
T ss_dssp             H-----HHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred             H-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence            4     588999999887777777777777777665        244555555554211227889999998886544433


Q ss_pred             hHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHH
Q psy355          227 TEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT  269 (285)
Q Consensus       227 ~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~  269 (285)
                      +..+.   .|.-...+.+.+.++++-. +--.+|.+.+-.+|.
T Consensus       165 ~~~~~---~p~~E~e~~i~~~ikkvL~-DVTaeEF~l~m~lL~  203 (556)
T PF05918_consen  165 KPELL---TPQKEMEEFIVDEIKKVLQ-DVTAEEFELFMSLLK  203 (556)
T ss_dssp             -TTTS------HHHHHHHHHHHHHHCT-T--HHHHHHHHHHHH
T ss_pred             cHHHh---hchHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence            22111   1222334444444444432 234566666656554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.60  E-value=0.015  Score=54.08  Aligned_cols=222  Identities=14%  Similarity=0.051  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      .+.+..++..+.+++.+.+....+.+.+.--.++..|..  .+..=|.+|++.+-.+..-....+  -+-.|++..++.+
T Consensus        39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai  116 (371)
T PF14664_consen   39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI  116 (371)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence            578889999999999999888899999966677777764  445568999999998876422111  2356889999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      ..+ +++..|.-|+-.|.-++-.+|.   -+..+||+.+|++.+..+...+....+.++-++.+. |..++++...--++
T Consensus       117 ae~-~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~tR~yl~~~~dL~  191 (371)
T PF14664_consen  117 AEH-EDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRTRKYLRPGFDLE  191 (371)
T ss_pred             HhC-CchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cchhhhhcCCccHH
Confidence            997 5679999999999999998876   477899999999999887777888888888888664 66777766533344


Q ss_pred             HHHHhcccC----CCCCc--cHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHH
Q psy355          196 QMCVLIDIE----DALDT--EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT  269 (285)
Q Consensus       196 ~L~~lL~~~----~~~d~--~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~  269 (285)
                      .+..-+...    ...+.  +....+..++..+++.-+-.+-.|.+.--++.++++    .++.  .+.+..++.-.++-
T Consensus       192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~----~L~~--p~~~ir~~Ildll~  265 (371)
T PF14664_consen  192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD----SLRL--PNPEIRKAILDLLF  265 (371)
T ss_pred             HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH----HHcC--CCHHHHHHHHHHHH
Confidence            444333322    11123  456778888888888887555444433235544443    5542  23344444444444


Q ss_pred             Hhc
Q psy355          270 EVF  272 (285)
Q Consensus       270 ~~f  272 (285)
                      ..|
T Consensus       266 dll  268 (371)
T PF14664_consen  266 DLL  268 (371)
T ss_pred             HHH
Confidence            333

>KOG2023|consensus

Probab=97.58  E-value=0.00084  Score=65.19  Aligned_cols=107  Identities=16%  Similarity=0.234  Sum_probs=76.8

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC--ChHhH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD--NEECL  143 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~--~~~~~  143 (285)
                      |.|-..|.|+.-.+|+.+.-++|.+|.+   |-+.++..  ..+|.|+.+|+. +.+-||+-+||+||.....  ..+..
T Consensus       396 PlLk~~L~~~~W~vrEagvLAlGAIAEG---cM~g~~p~LpeLip~l~~~L~D-KkplVRsITCWTLsRys~wv~~~~~~  471 (885)
T KOG2023|consen  396 PLLKEHLSSEEWKVREAGVLALGAIAEG---CMQGFVPHLPELIPFLLSLLDD-KKPLVRSITCWTLSRYSKWVVQDSRD  471 (885)
T ss_pred             HHHHHHcCcchhhhhhhhHHHHHHHHHH---HhhhcccchHHHHHHHHHHhcc-CccceeeeeeeeHhhhhhhHhcCChH
Confidence            3334456688899999999999999976   55556554  378889999995 7789999999999987542  11122


Q ss_pred             HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      +.|.  ..+..|++.+-+++.+||+.||.+++-+-.+
T Consensus       472 ~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  472 EYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             hhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            2232  3344445555567899999999999877543

>KOG1061|consensus

Probab=97.57  E-value=0.0061  Score=60.21  Aligned_cols=163  Identities=15%  Similarity=0.184  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355           41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  120 (285)
Q Consensus        41 ~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~  120 (285)
                      +-.+-..++.+.-..|...      .+|.++++.+..+-+++...---+.|.+...|..+     .++++.+++=... +
T Consensus        31 ~~a~kkvIa~Mt~G~DvSs------lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d-~   98 (734)
T KOG1061|consen   31 KDAVKKVIAYMTVGKDVSS------LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCED-P   98 (734)
T ss_pred             HHHHHHHHhcCccCcchHh------hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCC-C
Confidence            3334455666666666544      47889999999999999999999999999999644     4567777776664 7


Q ss_pred             CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355          121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL  200 (285)
Q Consensus       121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l  200 (285)
                      ++.+|..|+..++++--+  ....     ..+.+|.++++++++-+|+.|+..+..+-.-++   +...+.|+++.|-.+
T Consensus        99 np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~l  168 (734)
T KOG1061|consen   99 NPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDL  168 (734)
T ss_pred             CHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHH
Confidence            899999999988887432  2221     246799999999999999999999998866554   566788999999999


Q ss_pred             cccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          201 IDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       201 L~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +...   ++.+...|+.+|..|....+.
T Consensus       169 l~D~---~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  169 LSDS---NPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             hcCC---CchHHHHHHHHHHHHHHhCCC
Confidence            9977   999999999999999988863

>TIGR02270 conserved hypothetical protein

Probab=97.54  E-value=0.0012  Score=62.29  Aligned_cols=118  Identities=12%  Similarity=-0.015  Sum_probs=79.4

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      +..|+..|.++++.||..++.+||.+-           ..++.+.|+.+|++ .++.+|..++.+++..  +        
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r--~--------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAH--R--------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcC-CChHHHHHHHHHHHhh--c--------
Confidence            677777777777778888888887432           12356677777775 5667777776666551  1        


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                        ..-.+.+..+|++.++.|+..|+.++..+-..           ..++.|...+.+.   ++.+|..|+.++..+
T Consensus       146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~---~~~VR~aA~~al~~l  205 (410)
T TIGR02270       146 --HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDS---DPEVRFAALEAGLLA  205 (410)
T ss_pred             --cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCC---CHHHHHHHHHHHHHc
Confidence              11234667778888888888888888876432           3555566667777   777777777777554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.54  E-value=0.0029  Score=54.44  Aligned_cols=184  Identities=13%  Similarity=0.109  Sum_probs=108.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCC--HHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355           75 EGSDPELRWRAAETVADIVQNN--PFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD  150 (285)
Q Consensus        75 ~s~~~~vr~~A~~~lg~~a~nn--~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~  150 (285)
                      .+.+-+.|..|+.-|-.++.++  ......+.+.  ..++.+...+.+ ....+.+.|+..++.++.+....+..++ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5678899999999999999877  2222233221  455677777775 4567999999999999987666665554 34


Q ss_pred             cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc-HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM-VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~-v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      .+|.|+..+.++..-++..|..++..++..-+...      .+ ++.+...+.+.   ++.+|..++..|..++...+..
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~  165 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSK---NPQVREECAEWLAIILEKWGSD  165 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccch
Confidence            67899999999888999999999999988754111      12 45666677777   9999999999999999888721


Q ss_pred             HhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhc
Q psy355          230 QSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF  272 (285)
Q Consensus       230 ~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f  272 (285)
                      ..... ....+ +.+..-+.+.- .+.+.+..+.+++++..|+
T Consensus       166 ~~~l~-~~~~~-~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  166 SSVLQ-KSAFL-KQLVKALVKLL-SDADPEVREAARECLWALY  205 (228)
T ss_dssp             -GGG---HHHH-HHHHHHHHHHH-TSS-HHHHHHHHHHHHHHH
T ss_pred             Hhhhc-ccchH-HHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH
Confidence            11111 11112 22333333332 2356677777777666553

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.53  E-value=0.0043  Score=58.72  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH-------------HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFS-------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS  133 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~-------------q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs  133 (285)
                      +..|+.+|.+  +++...|++.++-+....+.+             +|.+.. -.+|.|++-.+. .+...|...+.|||
T Consensus       273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~-~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKE-ADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhh-cChhhHHHHHHHHH
Confidence            4556666665  888999999999999874444             222222 378889888886 34568999999999


Q ss_pred             HHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHH
Q psy355          134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV  199 (285)
Q Consensus       134 ~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~  199 (285)
                      .++++-|...-.=--...+|.|++.|+.++..++..+...+..++.+.++....-++ .+|+.|++
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            999988865421111347899999999999999999999999999988766554332 45565554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.52  E-value=0.038  Score=50.20  Aligned_cols=195  Identities=22%  Similarity=0.212  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHH---cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC---
Q psy355           22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLK---MGGLPVLQPLLEGSDPELRWRAAETVADIVQN---   95 (285)
Q Consensus        22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~---~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---   95 (285)
                      +.+++++.-+.+..  ...|..+|..+....... +..+|+.   .-.+..+.+.++.+..+-+..|+++++-++-.   
T Consensus        43 ~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   43 DKLKEAIDLLTEKS--SSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence            45788888887665  467888888888876442 2334442   22456777888888877888899999887532   


Q ss_pred             CHHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHHHHHHHHhh--C-ChHhHHHHHhcCcHH--HHHHhhcc--------
Q psy355           96 NPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVR--D-NEECLKEFIKRDGFS--VLLRCIQS--------  161 (285)
Q Consensus        96 n~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r--~-~~~~~~~f~~~~gi~--~L~~~L~~--------  161 (285)
                      .+... .+++ ...|+|.+.+...+ ...+|..++.||+-++.  + .+......+  ..+.  .....+++        
T Consensus       120 g~~~~-ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~  195 (309)
T PF05004_consen  120 GEDSE-EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVA  195 (309)
T ss_pred             CccHH-HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCccccc
Confidence            23333 3333 48888988887532 34677777777775533  2 222222111  1112  11111221        


Q ss_pred             --CcHHHHHHHHHHHHHHhcCCchH-HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          162 --KKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       162 --~~~~v~~ka~~~l~~L~~~~~~~-~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                        +++.+...|..+.+-|++.-|.. ..... ...++.|+.+|.++   +.++|-.|-.+|.-|.....
T Consensus       196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~---d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  196 AEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD---DVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Confidence              23678888877777777664441 22222 35789999999999   99999999999988876654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3678|consensus

Probab=97.51  E-value=0.0038  Score=58.62  Aligned_cols=175  Identities=15%  Similarity=0.254  Sum_probs=131.7

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      +...++.+..|+.....+..+-..|+.+... .|-..+...| +..++.+-+ ...++++...+.+|+++-......-+.
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~  259 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR  259 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4456667777776557788888777776532 4555666666 666666544 477899999999999999988777778


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC-ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~-~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~  181 (285)
                      ++..|++..++--++. .++.+-+.++.||+|++-+ ....+..+++......|.-+-.+.|.-+|-.||.+++-|++..
T Consensus       260 Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~K  338 (832)
T KOG3678|consen  260 LVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNK  338 (832)
T ss_pred             HHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhh
Confidence            9999999999888886 5689999999999998754 4556777888888888888888889999999999999887753


Q ss_pred             chHHHHHHHCCc---HHHHHHhcc
Q psy355          182 NQVKQVLLSMGM---VEQMCVLID  202 (285)
Q Consensus       182 ~~~~~~l~~~g~---v~~L~~lL~  202 (285)
                       ++-..+-..|.   |++++..+.
T Consensus       339 -E~E~~VrkS~TlaLVEPlva~~D  361 (832)
T KOG3678|consen  339 -EVEREVRKSGTLALVEPLVASLD  361 (832)
T ss_pred             -hhhHHHhhccchhhhhhhhhccC
Confidence             44444545553   455555544

>KOG4413|consensus

Probab=97.51  E-value=0.0029  Score=56.99  Aligned_cols=154  Identities=13%  Similarity=0.169  Sum_probs=120.4

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH--HHHH--HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNP--FSQN--FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC  142 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~--~~q~--~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~  142 (285)
                      .|.|-.=|.+++..|+..|+..||.+..|.+  .+..  .+++.|.+|.++..+-. .+.+|.+.|.-.|+.|++ .|.+
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh-cHHH
Confidence            3445555779999999999999999998876  2332  35689999999999986 678999999999999988 6888


Q ss_pred             HHHHHhcCcHHHH--HHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355          143 LKEFIKRDGFSVL--LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  220 (285)
Q Consensus       143 ~~~f~~~~gi~~L--~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~  220 (285)
                      ...+...+-...+  .++-...+.-+|.+...+|..+.+-.|....+.-..|.+..|..-|+..  .|.-++..++....
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt--eDtLVianciElvt  239 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT--EDTLVIANCIELVT  239 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC--cceeehhhHHHHHH
Confidence            8888776655433  3443344556677778888888888899999999999999998888874  27777888887777


Q ss_pred             HHHh
Q psy355          221 SLIK  224 (285)
Q Consensus       221 ~l~~  224 (285)
                      .++.
T Consensus       240 eLae  243 (524)
T KOG4413|consen  240 ELAE  243 (524)
T ss_pred             HHHH
Confidence            7663

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.00034  Score=66.40  Aligned_cols=163  Identities=10%  Similarity=0.100  Sum_probs=124.8

Q ss_pred             HHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        61 ~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      +.+.....+|+++|..|+.-|...+...|+|.+-.-...+..+++.|.+..|++++.+ ++.++|++..|.+-.+..|+.
T Consensus       427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s-KDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS-KDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc-chhhhhhcchhhhhhhhhcCc
Confidence            3344467889999999999999999999999988777789999999999999999996 788999999999999998875


Q ss_pred             Hh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC---chHHHHHHHCC----cHHHHHHhcccCCCCCccHH
Q psy355          141 EC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLSMG----MVEQMCVLIDIEDALDTEMN  212 (285)
Q Consensus       141 ~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~---~~~~~~l~~~g----~v~~L~~lL~~~~~~d~~~~  212 (285)
                      .. +-.|+...|...++.....++.++|.....++.|++-..   ...++.+++..    ..+.|+.-+...   ++-..
T Consensus       506 ~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~---np~~i  582 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN---NPMEI  582 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc---Cchhh
Confidence            54 335888899999999999999999999999999997631   22222222221    334555655554   44444


Q ss_pred             HHHHHHHHHHHhcCh
Q psy355          213 EHLLSALASLIKDST  227 (285)
Q Consensus       213 e~al~aL~~l~~~~~  227 (285)
                      +..+..|.+++..+.
T Consensus       583 ~~~~yilv~~aa~d~  597 (743)
T COG5369         583 LEGCYILVRNAACDD  597 (743)
T ss_pred             hhhHHHHHHHHhccc
Confidence            444666766665553

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.0057  Score=61.14  Aligned_cols=163  Identities=15%  Similarity=0.182  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHH-HhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLS-DYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~-~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      +..+..|+..+. .+...-|...-      +|-+++...+.+.+++.-.--=+-+.++++|..+  ++   +++.+.+=+
T Consensus        33 ~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti~kDl  101 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTIQKDL  101 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHHHhhc
Confidence            556666665443 34444443332      5677777778899999888888888999998432  22   467777778


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      .+ +++.+|..|+.++|.+ +  .   ..++ ...++++.+++.++++.||+.|+.++..+-+-++   ....+.|.+..
T Consensus       102 ~d-~N~~iR~~AlR~ls~l-~--~---~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~  170 (757)
T COG5096         102 QD-PNEEIRGFALRTLSLL-R--V---KELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDI  170 (757)
T ss_pred             cC-CCHHHHHHHHHHHHhc-C--h---HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHH
Confidence            85 7899999999999986 2  1   2233 2357899999999999999999999999987655   45667789999


Q ss_pred             HHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          197 MCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      +..++...   |+.+...|+.+|..+-..
T Consensus       171 l~~l~~D~---dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         171 LKELVADS---DPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHhhCC---CchHHHHHHHHHHHhchh
Confidence            99999888   999999999988777544

>KOG0213|consensus

Probab=97.45  E-value=0.00048  Score=67.55  Aligned_cols=148  Identities=12%  Similarity=0.119  Sum_probs=104.8

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC------ChH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD------NEE  141 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~------~~~  141 (285)
                      ..++..|+++++.+|.+|+..++.++---..|++.-.=...--.|...|.. ..+++--..+.||.+|+.-      .|+
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pP  880 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPP  880 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCC
Confidence            345567889999999999999999986444444332211122235667765 5677777777777776543      233


Q ss_pred             hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355          142 CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  221 (285)
Q Consensus       142 ~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~  221 (285)
                      .      .+.+|.|..+|++.+.|++....-++..++..+|+....=-=+.++--|+.+|++.   ...+|..|..+++.
T Consensus       881 i------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah---kK~iRRaa~nTfG~  951 (1172)
T KOG0213|consen  881 I------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH---KKEIRRAAVNTFGY  951 (1172)
T ss_pred             h------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhH
Confidence            2      35678999999999999999999999999998875432222223666778888887   88888888888888


Q ss_pred             HHhc
Q psy355          222 LIKD  225 (285)
Q Consensus       222 l~~~  225 (285)
                      |++.
T Consensus       952 Iaka  955 (1172)
T KOG0213|consen  952 IAKA  955 (1172)
T ss_pred             HHHh
Confidence            8754

>KOG1824|consensus

Probab=97.45  E-value=0.0033  Score=63.31  Aligned_cols=191  Identities=14%  Similarity=0.123  Sum_probs=126.2

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHH-HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH----
Q psy355           25 EKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP-VLQPLLEGSDPELRWRAAETVADIVQNNPFS----   99 (285)
Q Consensus        25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~-~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~----   99 (285)
                      .+.+..+.++..++..++-|+-.|.++-...|    .-...+++ .++..++||+.+|+..|+.+||+++.+|-..    
T Consensus       820 ~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpf  895 (1233)
T KOG1824|consen  820 TKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPF  895 (1233)
T ss_pred             HHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHH
Confidence            34444555566667788888877777654433    12222343 6778999999999999999999999865321    


Q ss_pred             ----------HHHHH---------h------cCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355          100 ----------QNFII---------Q------TDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus       100 ----------q~~v~---------~------~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                                +++++         .      .-.++.+|.+|..   ...+..|.-.+-+|+.++-.+|..        .
T Consensus       896 il~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------L  967 (1233)
T KOG1824|consen  896 ILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------L  967 (1233)
T ss_pred             HHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------H
Confidence                      11110         0      1123334443332   012234444444444444443331        3


Q ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          152 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      +|.|-..+.++.+..|.-+..++....+..|.-.+.+.+ ..+..+..+++.+   |..+|..|+.++-..+.+.|..++
T Consensus       968 lpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp---Dl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen  968 LPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP---DLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred             HHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC---chhHHHHHHHHHHHHHccCHhHHH
Confidence            567777888888999999999999888887766666664 4677788899999   999999999999999988886554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.42  E-value=0.0018  Score=59.20  Aligned_cols=138  Identities=18%  Similarity=0.297  Sum_probs=97.3

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC------
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN------  139 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~------  139 (285)
                      .++.+..+|.++++.||..|+.+||.+-  +|.         .+|.|+.++..+.+..+|..|.++|+.+--..      
T Consensus        75 av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~  143 (335)
T COG1413          75 AVPLLRELLSDEDPRVRDAAADALGELG--DPE---------AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLL  143 (335)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHH
Confidence            4677778888888888888888777643  332         67888888886577888888888888762211      


Q ss_pred             ------h----------H---hH----HHHH---hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355          140 ------E----------E---CL----KEFI---KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  193 (285)
Q Consensus       140 ------~----------~---~~----~~f~---~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~  193 (285)
                            .          .   ..    ....   +...++.+...+.+.+..+|..|+.++..+....         ..+
T Consensus       144 ~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~  214 (335)
T COG1413         144 EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEA  214 (335)
T ss_pred             HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhH
Confidence                  0          0   11    1111   2235678888898888999999999999886654         345


Q ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+.+...+..+   +..++..++.+|..+-...
T Consensus       215 ~~~l~~~~~~~---~~~vr~~~~~~l~~~~~~~  244 (335)
T COG1413         215 ADLLVKALSDE---SLEVRKAALLALGEIGDEE  244 (335)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHhcccCcch
Confidence            57777888877   8888888888776654333

>KOG2023|consensus

Probab=97.42  E-value=0.0013  Score=63.98  Aligned_cols=149  Identities=15%  Similarity=0.170  Sum_probs=105.6

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH-HHh---
Q psy355           73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE-FIK---  148 (285)
Q Consensus        73 lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~-f~~---  148 (285)
                      .|...++-||.-.-.+|.+++.... .|.+   -.++|.|..+|.+ ++.....-|..||+.|+.+++.-.+. +..   
T Consensus        98 ~lgd~~~lIr~tvGivITTI~s~~~-~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl  172 (885)
T KOG2023|consen   98 GLGDASPLIRATVGIVITTIASTGG-LQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL  172 (885)
T ss_pred             hccCchHHHHhhhhheeeeeecccc-cccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCch
Confidence            3344556666666666666664322 2333   4589999999997 56789999999999999886554332 111   


Q ss_pred             cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      .--+|.++++.+++++++|..|..++..+.-..+...-.-+ ..+++.+..+-...   ++.+|..+..+|..|+..-|+
T Consensus       173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFalanD~---~~eVRk~vC~alv~Llevr~d  248 (885)
T KOG2023|consen  173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALANDE---DPEVRKNVCRALVFLLEVRPD  248 (885)
T ss_pred             HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcHH
Confidence            12468889999999999999999999877655443222222 24677777776666   899999999999999988876


Q ss_pred             HH
Q psy355          229 AQ  230 (285)
Q Consensus       229 ~~  230 (285)
                      .+
T Consensus       249 kl  250 (885)
T KOG2023|consen  249 KL  250 (885)
T ss_pred             hc
Confidence            43

>KOG4646|consensus

Probab=97.41  E-value=0.0056  Score=48.43  Aligned_cols=108  Identities=11%  Similarity=0.062  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      .+.+...+.+|+.+.-+.-|=.-+..+.++..++..|..++..+...+.-.|+|+|- .+.....+.+.+++|..+..++
T Consensus        31 ~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ls  109 (173)
T KOG4646|consen   31 IEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVLS  109 (173)
T ss_pred             HHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeecC
Confidence            467888888999998887777888999999999999999999999999999999995 5778889999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFI  147 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~  147 (285)
                      + +...+.-.|+.++--++-+...-...+.
T Consensus       110 s-p~e~tv~sa~~~l~~l~~~~Rt~r~ell  138 (173)
T KOG4646|consen  110 S-PPEITVHSAALFLQLLEFGERTERDELL  138 (173)
T ss_pred             C-ChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence            6 5566777777888777776655444443

>KOG1222|consensus

Probab=97.39  E-value=0.024  Score=53.67  Aligned_cols=208  Identities=13%  Similarity=0.152  Sum_probs=145.2

Q ss_pred             HHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHH
Q psy355           46 DNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV  124 (285)
Q Consensus        46 ~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v  124 (285)
                      .-...++-+..||.-++.-.|+..|+. -+++.++-+    ..++.|+.|.....|..|++  .+..|...++.+.+++.
T Consensus       448 a~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F  521 (791)
T KOG1222|consen  448 ALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESF  521 (791)
T ss_pred             HHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHH
Confidence            334566777788999999889999987 578877754    56888999988878888877  57788888888778889


Q ss_pred             HHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355          125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID  202 (285)
Q Consensus       125 ~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~  202 (285)
                      -..++..++|+.--.-+-.+.+...+.+|.+-..|+.+  ...++-...-+++..+. +......+...|+|+.|+.+|+
T Consensus       522 ~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~  600 (791)
T KOG1222|consen  522 GLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQ  600 (791)
T ss_pred             HHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHH
Confidence            99999999998764333333344568899998888864  35566666666665544 3456667778899999999999


Q ss_pred             cCCCCCccHHHHHHHHHHHHHhcChH---HHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHh
Q psy355          203 IEDALDTEMNEHLLSALASLIKDSTE---AQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEV  271 (285)
Q Consensus       203 ~~~~~d~~~~e~al~aL~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~  271 (285)
                      .. -.|.++.-..+.....++.+...   ...+...+ ..+.        .+. |+.|.++.+.|.+.+...
T Consensus       601 a~-QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~-AylI--------DLM-HDkN~eiRkVCDn~LdIi  661 (791)
T KOG1222|consen  601 AC-QEDDEFVVQIIYVFLQFLKHELTRRLMIKETALG-AYLI--------DLM-HDKNAEIRKVCDNALDII  661 (791)
T ss_pred             hh-cccchHHHHHHHHHHHHHHHHHHHHHHHhhccch-HHHH--------HHH-hcccHHHHHHHHHHHHHH
Confidence            75 23667778888888888877321   11222111 1222        333 556667766666666544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.32  E-value=0.0023  Score=47.94  Aligned_cols=94  Identities=11%  Similarity=0.263  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcc
Q psy355          124 VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLID  202 (285)
Q Consensus       124 v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~  202 (285)
                      .|+-++.+|+.++.+-+....... .-.+++++.++.+.+.++|--||.++++++... ......+  ..+++.|++++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence            367788999998887666554444 457899999999999999999999999998652 2222222  357788999988


Q ss_pred             cCCCCCccHHHHHHHHHHHHHh
Q psy355          203 IEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       203 ~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      .+   ++.++..| ..|-++++
T Consensus        79 D~---d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DP---DENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CC---chhHHHHH-HHHHHHhc
Confidence            87   88877665 66666654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.24  E-value=0.068  Score=44.43  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHH
Q psy355           78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR  157 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~  157 (285)
                      +|.||..++.++|-++..-|..-+     ..+|.+...|.+ +++.||+.|+..|+.++....-..+    ..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHH
Confidence            588999999999999988775433     368999999995 7899999999999999875322111    112367788


Q ss_pred             hhccCcHHHHHHHHHHHHHHhcC-Cc
Q psy355          158 CIQSKKEKLVIKSCFLIACLCTD-NN  182 (285)
Q Consensus       158 ~L~~~~~~v~~ka~~~l~~L~~~-~~  182 (285)
                      ++.++++.++.-|..++..+... +|
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~   96 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKRNP   96 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhccc
Confidence            89999999999999999998776 44

>TIGR02270 conserved hypothetical protein

Probab=97.23  E-value=0.042  Score=51.85  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=66.2

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      ..+.|+.+|+++++.+|..++.++|.            ......+.|..+|++ .++.|+..|+.+|+.+-+.       
T Consensus       118 a~~~L~~~L~~~~p~vR~aal~al~~------------r~~~~~~~L~~~L~d-~d~~Vra~A~raLG~l~~~-------  177 (410)
T TIGR02270       118 AEPWLEPLLAASEPPGRAIGLAALGA------------HRHDPGPALEAALTH-EDALVRAAALRALGELPRR-------  177 (410)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHh------------hccChHHHHHHHhcC-CCHHHHHHHHHHHHhhccc-------
Confidence            46788889999999999888888876            112356678888874 6789999999999886432       


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                          ..++.|...+.+.++.||..|++.+.-+
T Consensus       178 ----~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       178 ----LSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             ----cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence                2344566778888899998888887654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.22  E-value=0.00082  Score=64.80  Aligned_cols=152  Identities=13%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-H
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ--NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-L  143 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q--~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~  143 (285)
                      +..++++|+|+.|.+|.+|+...|.++.--..|.  ..+.+.|.  .|..-|.. ..+++--..+.||.+|...+.-. .
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGE-DYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCc-ccHHHHHHHHHHHHHHhhhhccccc
Confidence            3455678999999999999999999875222221  12223232  24455554 46777777777777775432110 0


Q ss_pred             HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +-= -.|.+|.|..+|++...|++....-++.-+|...|+....=-=+.++-.|+.+|++.   +..+|..|..+++.|.
T Consensus       683 qpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~---nKeiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW---NKEIRRNATETFGCIS  758 (975)
T ss_pred             CCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh---hHHHHHhhhhhhhhHH
Confidence            000 146789999999999999999999999999988775321111123566778888888   8888888888887776


Q ss_pred             hc
Q psy355          224 KD  225 (285)
Q Consensus       224 ~~  225 (285)
                      ..
T Consensus       759 ~a  760 (975)
T COG5181         759 RA  760 (975)
T ss_pred             hh
Confidence            53

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.17  E-value=0.013  Score=56.08  Aligned_cols=178  Identities=13%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             HHHHHHHhhcCcchHHHHHHcCCHHHHHhhh----------cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355           44 ALDNLSDYVCSIDYANDFLKMGGLPVLQPLL----------EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  113 (285)
Q Consensus        44 al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL----------~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~  113 (285)
                      +|..|.-+..+..++..+..-.|+..|.++=          ..+++.+...|+++|+|+.=++|..|+.+++.|..+.++
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            3566666777777777766666677666643          457899999999999999999999999999999999999


Q ss_pred             HhhccCC----CHHHHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhcc-----------------CcHHHHHHHH
Q psy355          114 TSIEHDS----NTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQS-----------------KKEKLVIKSC  171 (285)
Q Consensus       114 ~LL~~~~----~~~v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~-----------------~~~~v~~ka~  171 (285)
                      ..|+...    +..+.--.+.-|==++...+.....+++ .+|+..|+..|..                 .+.....++.
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            9998742    2233322111111122334445555554 5788877776542                 1344566777


Q ss_pred             HHHHHHhcCCchHHHHHHHCCcHHHHHHhcc------cCCCCCccHHHHHHHHHHHH
Q psy355          172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLID------IEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~------~~~~~d~~~~e~al~aL~~l  222 (285)
                      -++.|++...+.... -...+.++.++.+|.      .++........++..+|.++
T Consensus       161 KllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl  216 (446)
T PF10165_consen  161 KLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL  216 (446)
T ss_pred             HHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence            777777765443222 011233333333322      11122345677777777776

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.17  E-value=0.0059  Score=45.72  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhhCCHHH-HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355           82 RWRAAETVADIVQNNPFS-QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ  160 (285)
Q Consensus        82 r~~A~~~lg~~a~nn~~~-q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~  160 (285)
                      |..++..|+.++..-+.. .+.+  .-.+|+++..+.. ++..||..||.+|.++++......-.+. ...+..|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence            556677777776655443 2222  3489999999995 7899999999999999987554332222 357788899999


Q ss_pred             cCcHHHHHHHHHHHHHH
Q psy355          161 SKKEKLVIKSCFLIACL  177 (285)
Q Consensus       161 ~~~~~v~~ka~~~l~~L  177 (285)
                      ++++.||.-|. ++-.+
T Consensus        79 D~d~~Vr~~a~-~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAAE-LLDRL   94 (97)
T ss_pred             CCchhHHHHHH-HHHHH
Confidence            99999987664 44444

>KOG1059|consensus

Probab=97.14  E-value=0.016  Score=56.96  Aligned_cols=153  Identities=14%  Similarity=0.188  Sum_probs=99.8

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH--------HHh--cC-cHHHHHHhhcc--CCCHHHHHHHHHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF--------IIQ--TD-FLNLLLTSIEH--DSNTTVQVKSLYAV  132 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~--------v~~--~g-~l~~L~~LL~~--~~~~~v~~~a~~AL  132 (285)
                      .+|.|+.=|..|+|.|+..|..+|+.+|.-||..--.        +..  ++ ++=.+++|+..  .-.+.+.+|.+--|
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl  261 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI  261 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence            5888888899999999999999999999999853110        000  01 22223333322  12345666666666


Q ss_pred             HHHhhCChHh------HHHHHh----cCc----------HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355          133 SCLVRDNEEC------LKEFIK----RDG----------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG  192 (285)
Q Consensus       133 s~l~r~~~~~------~~~f~~----~~g----------i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g  192 (285)
                      .++++.+..-      +..++.    .|+          ++.|-.++.++|+.++==++.+++.++..+|...+..-   
T Consensus       262 t~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k---  338 (877)
T KOG1059|consen  262 TELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK---  338 (877)
T ss_pred             HHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH---
Confidence            6666543321      122221    121          34555566677888888888888888877776554433   


Q ss_pred             cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                        +.++.+|...   |..+|-.|+..|..++...
T Consensus       339 --dlIlrcL~Dk---D~SIRlrALdLl~gmVskk  367 (877)
T KOG1059|consen  339 --DLILRCLDDK---DESIRLRALDLLYGMVSKK  367 (877)
T ss_pred             --HHHHHHhccC---CchhHHHHHHHHHHHhhhh
Confidence              4567888888   9999999999998887554

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.11  E-value=0.016  Score=47.13  Aligned_cols=128  Identities=13%  Similarity=0.198  Sum_probs=97.2

Q ss_pred             HHHHHHhcCcHHHHHHhhccCCC-----HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHH
Q psy355           99 SQNFIIQTDFLNLLLTSIEHDSN-----TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSC  171 (285)
Q Consensus        99 ~q~~v~~~g~l~~L~~LL~~~~~-----~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~  171 (285)
                      ..+.|++.||++.|++++.++..     ..+-..++.|...+..+..-..+ .+...-+..++..+...  +..+.+.|.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence            35678999999999999997552     35667777777777765443332 22233344555555543  689999999


Q ss_pred             HHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      ..+-+++.+.+.....+.+.=-++.|+..|..+   +.+++..++..+-+|....++..
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChHH
Confidence            999999998887777777766789999999998   99999999999999998887543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.09  E-value=0.00095  Score=38.90  Aligned_cols=29  Identities=41%  Similarity=0.668  Sum_probs=26.0

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQN   95 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n   95 (285)
                      +|.+++++++++++||..|+++||.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2259|consensus

Probab=97.09  E-value=0.0058  Score=59.48  Aligned_cols=179  Identities=11%  Similarity=0.044  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCC--------------HHHHHhhhcCCCHHHHHHH---HHHHHHHh--hCCHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGG--------------LPVLQPLLEGSDPELRWRA---AETVADIV--QNNPFS   99 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg--------------~~~Lv~lL~s~~~~vr~~A---~~~lg~~a--~nn~~~   99 (285)
                      .++..++.-|.++..+-|.-..-....|              +...++++..++..||..|   .|++||..  .-....
T Consensus       194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            4555666668888877665422222223              5677888888999999988   45556655  111111


Q ss_pred             HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-------------------------------------
Q psy355          100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-------------------------------------  142 (285)
Q Consensus       100 q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-------------------------------------  142 (285)
                      .+.=..-.++..+...++. -+..||+.|.-+|+.+-.-+..-                                     
T Consensus       274 ~e~kl~D~aF~~vC~~v~D-~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRD-RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhc-CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            1111122356666666663 55678888877776653221111                                     


Q ss_pred             -------------HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355          143 -------------LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT  209 (285)
Q Consensus       143 -------------~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~  209 (285)
                                   ...+|..|.-..+++.|.+.-..||+.|+..++.|+.+.|.+...     .+.-|+.+++..   ..
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE---~~  424 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE---IE  424 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH---HH
Confidence                         112334444567777787777899999999999999988866533     567888998887   88


Q ss_pred             cHHHHHHHHHHHHHhcC
Q psy355          210 EMNEHLLSALASLIKDS  226 (285)
Q Consensus       210 ~~~e~al~aL~~l~~~~  226 (285)
                      ++|.+|+.+|..|..+-
T Consensus       425 ~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988764

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.09  E-value=0.11  Score=49.07  Aligned_cols=198  Identities=16%  Similarity=0.208  Sum_probs=128.6

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh-cCCCHHHHHHHHHHH-----HH
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETV-----AD   91 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL-~s~~~~vr~~A~~~l-----g~   91 (285)
                      ++..+.+.+.+....+... ...+..++..+.-++.-......+.  ..+..+..-+ ....+..+..+..++     |-
T Consensus       185 ~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL  261 (415)
T PF12460_consen  185 PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDDDDLD--EFLDSLLQSISSSEDSELRPQALEILIWITKAL  261 (415)
T ss_pred             cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCChhhHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence            3445566666666655554 5677888888887775532222111  1122222222 234444455555544     34


Q ss_pred             HhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-------------HHHHHhcCcHHHHHHh
Q psy355           92 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-------------LKEFIKRDGFSVLLRC  158 (285)
Q Consensus        92 ~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-------------~~~f~~~~gi~~L~~~  158 (285)
                      +..|+|...+      .+..|+.+|.+   +.+...|+.+++-++.+.+..             .|.|. .--+|.|++.
T Consensus       262 v~R~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~  331 (415)
T PF12460_consen  262 VMRGHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEG  331 (415)
T ss_pred             HHcCCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHH
Confidence            5566765444      46678999985   567888889998888773332             22232 2456788888


Q ss_pred             hccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          159 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       159 L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      .+..+...|.....++++++.+-|...-.-.=..++|.|++-|..+   |.+++..++.+|..++...++.+.
T Consensus       332 ~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~  401 (415)
T PF12460_consen  332 FKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELIS  401 (415)
T ss_pred             HhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHH
Confidence            8877777888889999999998763321111124778899999988   999999999999999999976554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.98  E-value=0.02  Score=47.66  Aligned_cols=95  Identities=14%  Similarity=0.261  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH-HHHHH
Q psy355          121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV-EQMCV  199 (285)
Q Consensus       121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v-~~L~~  199 (285)
                      ++.+|..++-+++-++.-+|...+.+     ++.+...|+++++.+|+.|..++++|..++.--     -.|-+ ..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHH
Confidence            36899999999999998888766544     688899999999999999999999998875311     12333 67778


Q ss_pred             hcccCCCCCccHHHHHHHHHHHHHhc-ChH
Q psy355          200 LIDIEDALDTEMNEHLLSALASLIKD-STE  228 (285)
Q Consensus       200 lL~~~~~~d~~~~e~al~aL~~l~~~-~~~  228 (285)
                      +|..+   ++.++..|...+..+... +|.
T Consensus        71 ~l~D~---~~~Ir~~A~~~~~e~~~~~~~~   97 (178)
T PF12717_consen   71 LLVDE---NPEIRSLARSFFSELLKKRNPN   97 (178)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHhccch
Confidence            88877   999999999999999988 554

>KOG1789|consensus

Probab=96.95  E-value=0.028  Score=57.66  Aligned_cols=138  Identities=22%  Similarity=0.283  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHhhcC-cchHHHH----HHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHH
Q psy355           39 DICIGALDNLSDYVCS-IDYANDF----LKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  112 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~-~dna~~~----~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L  112 (285)
                      +...-+|.+|..++.- .|-|..|    .-+|-++.+..+|.+ .++.++..|+.+|..+.. |..|-..+...|.+-.|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            3455678888887644 5777665    347888888888875 899999999999986665 55577788999999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcC
Q psy355          113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~  180 (285)
                      +.+|.+-  ++.|..++..|-.++. ++.....-.+.||+..+...+-. .+...|..|+.++..|...
T Consensus      1819 L~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1819 LTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            9999863  5788888777777655 45556667789999888877654 5789999999999999865

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.87  E-value=0.0079  Score=50.08  Aligned_cols=110  Identities=16%  Similarity=0.228  Sum_probs=81.6

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc---------CcHHHHHHHHHHHHHH
Q psy355          108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS---------KKEKLVIKSCFLIACL  177 (285)
Q Consensus       108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~---------~~~~v~~ka~~~l~~L  177 (285)
                      ....+++.+...+   ...+.+..|.-..|..+.. .+.|++.||+..|+.+|..         .+...+..+..++..+
T Consensus        67 ~p~~~i~~L~~~~---~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRP---STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT-----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccC---ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            4445777776532   2227778888777876654 7789999999999998873         3457888999999999


Q ss_pred             hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +.........+-..+++..|+..|.++   +..++..++..|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence            887655555555679999999999999   9999999999988764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1241|consensus

Probab=96.85  E-value=0.011  Score=58.32  Aligned_cols=154  Identities=14%  Similarity=0.085  Sum_probs=111.3

Q ss_pred             CCHHHHHhhhcC--C-----CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHH
Q psy355           65 GGLPVLQPLLEG--S-----DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSC  134 (285)
Q Consensus        65 Gg~~~Lv~lL~s--~-----~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~  134 (285)
                      +.+|.|+.+|..  +     +-.+-..|..+|.-.+|.        .+..++|+.+..+..   .++-.-|..|+.|.++
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGS  390 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGS  390 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence            456788887764  1     224566666667666653        233455555555441   2566788899999999


Q ss_pred             HhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH-HHHHCCcHHHHHHhcccCCCCCccHHH
Q psy355          135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ-VLLSMGMVEQMCVLIDIEDALDTEMNE  213 (285)
Q Consensus       135 l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~-~l~~~g~v~~L~~lL~~~~~~d~~~~e  213 (285)
                      +..|..+....-+-.+++|.++.++.++.--++.-++|.++.++..-|+.+. ...-.+.+..++.-|..    .+.+-.
T Consensus       391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D----ePrva~  466 (859)
T KOG1241|consen  391 ILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND----EPRVAS  466 (859)
T ss_pred             hhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh----CchHHH
Confidence            9999777766666789999999999988888999999999999988664332 22234566666666653    788999


Q ss_pred             HHHHHHHHHHhcChHHH
Q psy355          214 HLLSALASLIKDSTEAQ  230 (285)
Q Consensus       214 ~al~aL~~l~~~~~~~~  230 (285)
                      .+.+++.+|+..++++.
T Consensus       467 N~CWAf~~Laea~~eA~  483 (859)
T KOG1241|consen  467 NVCWAFISLAEAAYEAA  483 (859)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998887654

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.84  E-value=0.028  Score=49.43  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355          122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL  200 (285)
Q Consensus       122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l  200 (285)
                      ......|+..|--++--||+....|-+..++..++++|.. ..+.++..+..++.+++..+|...+.+-+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            3455667777777777799999999999999999999954 579999999999999999999999999999999999999


Q ss_pred             cccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          201 IDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       201 L~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +++. ..+.+++-+++..|.-.+..-
T Consensus       185 lk~~-~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSK-STDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             Hccc-cccHHHhHHHHHHHHHHHccc
Confidence            9986 346778888888877666444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4413|consensus

Probab=96.82  E-value=0.057  Score=48.91  Aligned_cols=180  Identities=17%  Similarity=0.204  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHH----HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355           22 AELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YAN----DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ   94 (285)
Q Consensus        22 ~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~----~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~   94 (285)
                      -...+.+..|..+-  +++..+.-++..+..++++-| |+.    ..+..|.++.++.|+..++.+|-..|...|..++-
T Consensus        78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial  157 (524)
T KOG4413|consen   78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL  157 (524)
T ss_pred             hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            33444555555444  334678889999999999987 333    35678888999999999999999999999999995


Q ss_pred             CCHHHHHHHHhcCcHHHH--HHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHH
Q psy355           95 NNPFSQNFIIQTDFLNLL--LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSC  171 (285)
Q Consensus        95 nn~~~q~~v~~~g~l~~L--~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~  171 (285)
                       -|..-.++.+...+..+  .+|-.. .+.-+|...+.-|-.|..-+|......-..|.+..|..-|+. .|.-++..+.
T Consensus       158 -fpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianci  235 (524)
T KOG4413|consen  158 -FPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCI  235 (524)
T ss_pred             -cHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence             56666677777666654  344333 344677777776666666567777667777888888888887 5778888888


Q ss_pred             HHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355          172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      -+.+.|+.. .+-++++-+.|+|..+++.+...
T Consensus       236 ElvteLaet-eHgreflaQeglIdlicnIIsGa  267 (524)
T KOG4413|consen  236 ELVTELAET-EHGREFLAQEGLIDLICNIISGA  267 (524)
T ss_pred             HHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCC
Confidence            888888653 45678888999999999999876

>KOG1222|consensus

Probab=96.76  E-value=0.087  Score=49.99  Aligned_cols=232  Identities=13%  Similarity=0.107  Sum_probs=151.9

Q ss_pred             hHHHHHHHHHHhc-----CCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh
Q psy355            5 NRGFLLDALNSMM-----VNVGAELEKIIKTLKENQDQ-----KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL   74 (285)
Q Consensus         5 ~~~~L~~al~~~~-----~d~~~~mk~~l~~l~~~~~~-----~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL   74 (285)
                      |.+|-++-|+.-.     ....+.+|+-++.+...-.+     ..-...|+--|..+.+++..-..+..-..+..||+.|
T Consensus       234 Rye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaL  313 (791)
T KOG1222|consen  234 RYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKAL  313 (791)
T ss_pred             HHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHH
Confidence            4555565555442     12255566655555444422     2335566777888888877667788888899999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355           75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV  154 (285)
Q Consensus        75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~  154 (285)
                      .-.+.++-......+-.+.- -.+......+.|.+..|++++.. .++.++...+.-+=|+.-+.- .....+..|-+|.
T Consensus       314 dr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~  390 (791)
T KOG1222|consen  314 DRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPH  390 (791)
T ss_pred             cccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhcccccc-ccHHHhhccchHH
Confidence            99888888888888776653 23346677889999999999996 678899988888888876543 3456777888999


Q ss_pred             HHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355          155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR  234 (285)
Q Consensus       155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~  234 (285)
                      +..+|.++..+  .-|.-+++++ +-+...+..+....+|+.+.+.+-+..  +.++--..+..-.+|+-....++--|.
T Consensus       391 l~~ll~~d~~~--~iA~~~lYh~-S~dD~~K~MfayTdci~~lmk~v~~~~--~~~vdl~lia~ciNl~lnkRNaQlvce  465 (791)
T KOG1222|consen  391 LASLLDSDTKH--GIALNMLYHL-SCDDDAKAMFAYTDCIKLLMKDVLSGT--GSEVDLALIALCINLCLNKRNAQLVCE  465 (791)
T ss_pred             HHHHhCCcccc--hhhhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHhcC--CceecHHHHHHHHHHHhccccceEEec
Confidence            99999775421  2244455555 446678888888899998887655431  333332222222445444444444554


Q ss_pred             cCcccHHHHHHH
Q psy355          235 LEPLNLKFKLNF  246 (285)
Q Consensus       235 ~~~~~l~~~l~~  246 (285)
                      ..  +|.-++++
T Consensus       466 Gq--gL~~LM~r  475 (791)
T KOG1222|consen  466 GQ--GLDLLMER  475 (791)
T ss_pred             Cc--chHHHHHH
Confidence            33  34335553

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=96.74  E-value=0.074  Score=48.79  Aligned_cols=159  Identities=16%  Similarity=0.196  Sum_probs=121.4

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhc--CcHHHHHHhhccCC---C---------HHHHHHHH-H
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQT--DFLNLLLTSIEHDS---N---------TTVQVKSL-Y  130 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~-nn~~~q~~v~~~--g~l~~L~~LL~~~~---~---------~~v~~~a~-~  130 (285)
                      +..+.+.|++..+.+..+|++.+..++. ++......+.+.  =-++.|.+++....   .         +.+|...+ +
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7888899999999999999999999999 887777777764  23345555554311   1         16777766 7


Q ss_pred             HHHHHhhCChHhHHHHHhcC-cHHHHHHhhccCcHHHHHHHHHHHH-HHhcC---CchHHHHHHHCCcHHHHHHhcccCC
Q psy355          131 AVSCLVRDNEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIA-CLCTD---NNQVKQVLLSMGMVEQMCVLIDIED  205 (285)
Q Consensus       131 ALs~l~r~~~~~~~~f~~~~-gi~~L~~~L~~~~~~v~~ka~~~l~-~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~  205 (285)
                      +||-+..+++.....++..+ -+..+.+.|..++..+.......+. +++.+   ....+..+....++..|+.+...+ 
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~-  216 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD-  216 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc-
Confidence            77877778887888888755 4678888898888888888887777 45544   246677788888999999988777 


Q ss_pred             CCCc----cHHHHHHHHHHHHHhcChH
Q psy355          206 ALDT----EMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       206 ~~d~----~~~e~al~aL~~l~~~~~~  228 (285)
                        +.    .+.+.+-..|..++.+...
T Consensus       217 --~~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  217 --GEDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             --CCcccchHHHHHHHHHHHHhcCCCc
Confidence              55    8899999999998876543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2734|consensus

Probab=96.73  E-value=0.21  Score=46.96  Aligned_cols=188  Identities=14%  Similarity=0.210  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC---------CHHHHHHHHhcCcH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN---------NPFSQNFIIQTDFL  109 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---------n~~~q~~v~~~g~l  109 (285)
                      -+....++.+.-+...+|--..|++..|++.|+.||.|.+.+|-......+-.++.-         -...-+++++.+++
T Consensus        99 ~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl  178 (536)
T KOG2734|consen   99 VDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL  178 (536)
T ss_pred             ccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence            456778888888888899889999999999999999999999999999998887642         11345677888999


Q ss_pred             HHHHHhhccCCCHHHHH------HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-cC-cHHHHHHHHHHHHHHhcCC
Q psy355          110 NLLLTSIEHDSNTTVQV------KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-SK-KEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       110 ~~L~~LL~~~~~~~v~~------~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-~~-~~~v~~ka~~~l~~L~~~~  181 (285)
                      +.|++-+.. -+++++.      .++.-+-|++--.+.-...+++.|-+..|+.-+. .. -..-+.-|.-.++-+...+
T Consensus       179 aLLvqnveR-LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s  257 (536)
T KOG2734|consen  179 ALLVQNVER-LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS  257 (536)
T ss_pred             HHHHHHHHH-hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence            999988875 3334443      3344455666555555556667777777766333 32 3455566666677666666


Q ss_pred             chHHHHHHHCCcHHHHHHhcccCC------CCCccHHHHHHHHHHHHHhcCh
Q psy355          182 NQVKQVLLSMGMVEQMCVLIDIED------ALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       182 ~~~~~~l~~~g~v~~L~~lL~~~~------~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      .+.+..+-..+++..++.-|..-.      .+..++-+....+|..++....
T Consensus       258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~  309 (536)
T KOG2734|consen  258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA  309 (536)
T ss_pred             chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh
Confidence            667777777788877776655421      1123567788888888776554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.68  E-value=0.032  Score=50.90  Aligned_cols=136  Identities=19%  Similarity=0.226  Sum_probs=100.1

Q ss_pred             CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHH
Q psy355           65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLK  144 (285)
Q Consensus        65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~  144 (285)
                      -.++.++.++.++++.+|..|++.+|.+..           .-++|.|..++.. .++.+|..|+++|+.+  +++.   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d-~~~~vr~~a~~aLg~~--~~~~---  105 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD-EDPRVRDAAADALGEL--GDPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC-CCHHHHHHHHHHHHcc--CChh---
Confidence            468899999999999999999999776552           2268999999996 6789999999988885  3333   


Q ss_pred             HHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCC-----------ch--------------HHH----HHH---HC
Q psy355          145 EFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDN-----------NQ--------------VKQ----VLL---SM  191 (285)
Q Consensus       145 ~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~-----------~~--------------~~~----~l~---~~  191 (285)
                            .++.|+.++. +++..+|..|++++..+-...           +.              ++.    .+.   ..
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~  179 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP  179 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence                  3456678887 478999999999988875432           01              111    111   22


Q ss_pred             CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ..++.+..++...   +..+|..+..+|..+....
T Consensus       180 ~~~~~l~~~l~~~---~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         180 EAIPLLIELLEDE---DADVRRAAASALGQLGSEN  211 (335)
T ss_pred             hhhHHHHHHHhCc---hHHHHHHHHHHHHHhhcch
Confidence            3556677777777   7788888888888887775

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.67  E-value=0.013  Score=41.34  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        82 r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      ...|+|++|++++. +.-.+.+-+.++++.++++..+++..++|--|.|+|+-+++ +....+.+
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L   66 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEIL   66 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHH
Confidence            46799999999985 44455666789999999999988888999999999998877 44444433

>KOG2973|consensus

Probab=96.67  E-value=0.086  Score=47.27  Aligned_cols=161  Identities=18%  Similarity=0.198  Sum_probs=101.2

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI-IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v-~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      .-++.+|.+++|.||..|...+-.++.. + .|... .+.-.++.+.+|+.. .++  ...|+.|+.|+.... .-.+.+
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~-~l~~~l   79 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-G-LQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKE-ELRKKL   79 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-c-hhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhH-HHHHHH
Confidence            4578899999999999999888877765 2 23222 123577888899985 333  677889999998753 334445


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH------CCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCVLIDIEDALDTEMNEHLLSALA  220 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~------~g~v~~L~~lL~~~~~~d~~~~e~al~aL~  220 (285)
                      ++. -+..++..+..+..-+-.-+|.+++||++........+..      .|...........+.+.. .--.+....+.
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~-a~f~ylA~vf~  157 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAY-AEFHYLAPVFA  157 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccc-cchhHHHHHHH
Confidence            544 5667777777777888888999999998876544443332      344555555555442111 12234455555


Q ss_pred             HHHhcChHHHhhcccCc
Q psy355          221 SLIKDSTEAQSLCRLEP  237 (285)
Q Consensus       221 ~l~~~~~~~~~~~~~~~  237 (285)
                      +|.+.. .....|..++
T Consensus       158 nls~~~-~gR~l~~~~k  173 (353)
T KOG2973|consen  158 NLSQFE-AGRKLLLEPK  173 (353)
T ss_pred             HHhhhh-hhhhHhcchh
Confidence            555433 2334444443

>KOG1062|consensus

Probab=96.66  E-value=0.037  Score=55.07  Aligned_cols=140  Identities=17%  Similarity=0.284  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------------C---cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355           77 SDPELRWRAAETVADIVQNNPFSQNFIIQT--------------D---FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--------------g---~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      ++|-+|...++.|+-+-||++...+.+.+-              |   ........++-.++..+|+.|+.+|+....+.
T Consensus       246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~  325 (866)
T KOG1062|consen  246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR  325 (866)
T ss_pred             CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence            467788888888888888777655544320              0   11112222222345689999999999988876


Q ss_pred             hHhHHHHHhcCcH---------------HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355          140 EECLKEFIKRDGF---------------SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       140 ~~~~~~f~~~~gi---------------~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      ..+.+.+. .+++               ..+++||+++|..+|++|.-+++.|+.++. + +     .++..|+.+|.+.
T Consensus       326 d~NirYva-Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v-~-----~mv~eLl~fL~~~  397 (866)
T KOG1062|consen  326 DNNIRYVA-LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-V-R-----VMVKELLEFLESS  397 (866)
T ss_pred             ccceeeee-hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-H-H-----HHHHHHHHHHHhc
Confidence            66543221 1211               366789999999999999999998887643 2 1     3567888999988


Q ss_pred             CCCCccHHHHHHHHHHHHHhcCh
Q psy355          205 DALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       205 ~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                         +.+++..+...+..++....
T Consensus       398 ---d~~~k~~~as~I~~laEkfa  417 (866)
T KOG1062|consen  398 ---DEDFKADIASKIAELAEKFA  417 (866)
T ss_pred             ---cHHHHHHHHHHHHHHHHhcC
Confidence               99999999998888887763

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=96.64  E-value=0.042  Score=44.10  Aligned_cols=72  Identities=18%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r  137 (285)
                      ++..|.+=|+++++.++..|+.+|..++.|. +.+...+.+.+.+..|+++++...++.|+.+++..|-+-..
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            4667777889999999999999999999994 66888898999999999999866778999999888776654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1242|consensus

Probab=96.60  E-value=0.081  Score=51.29  Aligned_cols=170  Identities=17%  Similarity=0.208  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCcHHHHHHhh
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~--nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      ..+..+++-+.-+.+..+-.-.++--..+|.+..-|....++||..+-.+|-.++.  .||.++.      .+|.|++.+
T Consensus       269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l  342 (569)
T KOG1242|consen  269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL  342 (569)
T ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence            46777888888777766667778878889999999999999999999888877665  5666554      589999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHH----HHHHhhccCcHHHHHHHHHHHHHHhcCC--chHHHHHHH
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFS----VLLRCIQSKKEKLVIKSCFLIACLCTDN--NQVKQVLLS  190 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~----~L~~~L~~~~~~v~~ka~~~l~~L~~~~--~~~~~~l~~  190 (285)
                      .+.+  .--.+++..|+.-.      +-++++..-+.    .|.+.|...+..++++++-.+.|+|..-  |....-++.
T Consensus       343 ~dp~--~~~~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~  414 (569)
T KOG1242|consen  343 ADPS--CYTPECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP  414 (569)
T ss_pred             cCcc--cchHHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence            8632  12244555555421      11233344444    4445555557888899999999998753  333322221


Q ss_pred             CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                       -.+|.|-..+..+   .+++|+.+.++|..+.+.-
T Consensus       415 -~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  415 -SLLPGLKENLDDA---VPEVRAVAARALGALLERL  446 (569)
T ss_pred             -HHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHH
Confidence             2556666666666   8999999999998877654

>KOG1991|consensus

Probab=96.57  E-value=0.41  Score=49.03  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhccC------CCHHHHHHHHHHHHHhhcCc---c-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHH
Q psy355           23 ELEKIIKTLKENQ------DQKDICIGALDNLSDYVCSI---D-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI   92 (285)
Q Consensus        23 ~mk~~l~~l~~~~------~~~~~~~~al~~L~~lv~~~---d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~   92 (285)
                      .|.=++.+|+...      .....+..||..+..+++-+   . .++- ...=.++.+.+.++|+.--+|.+|||+++..
T Consensus       411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            3445666676333      22345556665555554322   1 1221 1111256677788999999999999999999


Q ss_pred             hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355           93 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC  142 (285)
Q Consensus        93 a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~  142 (285)
                      +.-+=..+..+  ..++....+.|.++.+..||..|+.||..++.+.+.+
T Consensus       490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~  537 (1010)
T KOG1991|consen  490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA  537 (1010)
T ss_pred             HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence            94221112222  3356667777776677899999999999999987765

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.57  E-value=0.6  Score=42.90  Aligned_cols=144  Identities=10%  Similarity=0.192  Sum_probs=104.1

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC---cHHH
Q psy355           78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD---GFSV  154 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~---gi~~  154 (285)
                      ++++--.+-.+|-.++.. +.+...++....+..+.+.+.. ++-.+...|...+..+...|+.....|+..+   -+..
T Consensus       136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~  213 (335)
T PF08569_consen  136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK  213 (335)
T ss_dssp             STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred             CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            455555566666666653 4445566666666667777665 5678999999999998777888888888765   3457


Q ss_pred             HHHhhccCcHHHHHHHHHHHHHHhcCCchH---HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQV---KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~---~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ...+|.+++.-+|+.+.-+|+.|....+..   .+++-+..-+..++.+|++.   ...++-.|...+.-.+.+.
T Consensus       214 ~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  214 YNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---SKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhCC
Confidence            788899999999999999999998764332   35555667888999999998   8889999988887766554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2999|consensus

Probab=96.56  E-value=0.15  Score=49.14  Aligned_cols=162  Identities=15%  Similarity=0.249  Sum_probs=121.2

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC----HHHHHHHHHHHHHHh
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD----PELRWRAAETVADIV   93 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~----~~vr~~A~~~lg~~a   93 (285)
                      -.+...-+++++++.+++.  ..+..|+.+|..+.-+.-.|..|++..|+..|..+..++.    .++...++++...+.
T Consensus        79 ~sp~~~a~~i~e~l~~~~~--~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm  156 (713)
T KOG2999|consen   79 ASPSHYAKRIMEILTEGNN--ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM  156 (713)
T ss_pred             cCchHHHHHHHHHHhCCCc--HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            5677788999999998875  4555599999999999999999999999999999998754    477777777777765


Q ss_pred             hCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHH
Q psy355           94 QNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF  172 (285)
Q Consensus        94 ~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~  172 (285)
                      ...- +....+...++.....+... -.+..+-..|+.-+-+++-+.+.-.+.+.+.--+..|++.++..+.+++..|..
T Consensus       157 ehgv-vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia  235 (713)
T KOG2999|consen  157 EHGV-VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA  235 (713)
T ss_pred             hhce-eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence            4322 22222222333333333321 123456677888888888888777777888888999999999999999999999


Q ss_pred             HHHHHhcCCc
Q psy355          173 LIACLCTDNN  182 (285)
Q Consensus       173 ~l~~L~~~~~  182 (285)
                      ++..+...-|
T Consensus       236 l~nal~~~a~  245 (713)
T KOG2999|consen  236 LLNALFRKAP  245 (713)
T ss_pred             HHHHHHhhCC
Confidence            9998887644

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.54  E-value=0.22  Score=50.14  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=83.3

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      ++..+.+=|+++++.+|..|.+.++.+=-  +..-     ..+++++.+++.+ +++-||+.|+.||..+=+-.+   ..
T Consensus        93 avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~---~l  161 (757)
T COG5096          93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK---DL  161 (757)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH---hh
Confidence            36777788899999999999999997642  2222     2378999999996 678999999999999975443   34


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      +.+.|-+..+..++.+.++.+...|...+..+..+
T Consensus       162 ~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         162 YHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            66667777888888899999999999999888655

>KOG0414|consensus

Probab=96.53  E-value=0.063  Score=55.60  Aligned_cols=145  Identities=16%  Similarity=0.234  Sum_probs=113.6

Q ss_pred             CCH-HHHHhhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355           65 GGL-PVLQPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus        65 Gg~-~~Lv~lL~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      |-+ |.++...+    .++|++|..|.-++|.++--....-     .-.+|.|+..+..++++-+|..++-|+|-++--+
T Consensus       918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            444 44555553    4689999999999999886433321     2268999999997789999999999999998777


Q ss_pred             hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          140 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       140 ~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                      |.-.+.+-     +.|.+-|...+..+|+.|...+++|...+     .+--.|.+..++.+|..+   +..++..|=...
T Consensus       993 pnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~---~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  993 PNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP---NAEISDLAKSFF 1059 (1251)
T ss_pred             ccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC---cHHHHHHHHHHH
Confidence            76555443     46677788899999999999999997653     444579999999999999   999999988777


Q ss_pred             HHHHhcCh
Q psy355          220 ASLIKDST  227 (285)
Q Consensus       220 ~~l~~~~~  227 (285)
                      ..|...+.
T Consensus      1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred             HHhhhccc
Confidence            77776663

>KOG1060|consensus

Probab=96.45  E-value=1  Score=45.29  Aligned_cols=158  Identities=9%  Similarity=0.110  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      ..+++|+..+.-++..-+++.++     +|.+|+...+.+++|+...---|-.-|.++|...     .=-|..+-+-|. 
T Consensus        50 ~~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~-  118 (968)
T KOG1060|consen   50 SLKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALK-  118 (968)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhc-
Confidence            45555555555555444444432     4555555555566655555544444554443211     113455666666 


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC  198 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~  198 (285)
                      ++++-+|..|+.++|.|=-   +.+.-++    +-.+-++..+..+.||+.|+.+|-.|-+-+|+....+++     .+-
T Consensus       119 DpN~LiRasALRvlSsIRv---p~IaPI~----llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~  186 (968)
T KOG1060|consen  119 DPNQLIRASALRVLSSIRV---PMIAPIM----LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIK  186 (968)
T ss_pred             CCcHHHHHHHHHHHHhcch---hhHHHHH----HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHH
Confidence            5889999999999998722   2221121    234456677789999999999999999989888876553     445


Q ss_pred             HhcccCCCCCccHHHHHHHHHHHH
Q psy355          199 VLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       199 ~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                      .||...   ++-+...|+.|...+
T Consensus       187 ~LLaD~---splVvgsAv~AF~ev  207 (968)
T KOG1060|consen  187 KLLADR---SPLVVGSAVMAFEEV  207 (968)
T ss_pred             HHhcCC---CCcchhHHHHHHHHh
Confidence            566666   788888887777544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.43  E-value=0.066  Score=51.19  Aligned_cols=134  Identities=13%  Similarity=0.109  Sum_probs=91.3

Q ss_pred             CHHHHHHHHhcCcHHHHHHhh---------ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC----
Q psy355           96 NPFSQNFIIQTDFLNLLLTSI---------EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK----  162 (285)
Q Consensus        96 n~~~q~~v~~~g~l~~L~~LL---------~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~----  162 (285)
                      ++...+.+....++..|+++-         ....+..+...|+-+|+|++-.++.+++.|.+.|+.+.++..|+..    
T Consensus        11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~   90 (446)
T PF10165_consen   11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS   90 (446)
T ss_pred             CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence            444555666666777777766         4446789999999999999999999999999999999999999875    


Q ss_pred             -cHHHHHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC----C---C-------CCccHHHHHHHHHHHHHhcC
Q psy355          163 -KEKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE----D---A-------LDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       163 -~~~v~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~----~---~-------~d~~~~e~al~aL~~l~~~~  226 (285)
                       +..+.--...++-=++...+..+..+++. +++..+...|...    +   .       .+.....-+|.++.+++..+
T Consensus        91 ~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~  170 (446)
T PF10165_consen   91 QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY  170 (446)
T ss_pred             CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence             45554434333333334456677666654 6777666554432    1   0       12334556677888887777


Q ss_pred             hHH
Q psy355          227 TEA  229 (285)
Q Consensus       227 ~~~  229 (285)
                      +..
T Consensus       171 ~~~  173 (446)
T PF10165_consen  171 PKS  173 (446)
T ss_pred             Ccc
Confidence            643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2734|consensus

Probab=96.41  E-value=0.87  Score=42.92  Aligned_cols=206  Identities=17%  Similarity=0.155  Sum_probs=141.4

Q ss_pred             CHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHh-hhc-CCCHHHHHHHHHHHHHHhh
Q psy355           19 NVGAELEKIIKTLKENQDQK-DICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQP-LLE-GSDPELRWRAAETVADIVQ   94 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~~~-~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~-lL~-s~~~~vr~~A~~~lg~~a~   94 (285)
                      .....+-+.++-|.....++ +-....+..+..+++- .+.+...++.|-+.-|+. +-. .+-......|..+++-+.|
T Consensus       176 ~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq  255 (536)
T KOG2734|consen  176 QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ  255 (536)
T ss_pred             cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence            34555555555555544322 3355556666666643 234445666666665555 332 4667788999999999999


Q ss_pred             CCHHHHHHHHhcCcHHHHHHhhcc----CC----CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHH
Q psy355           95 NNPFSQNFIIQTDFLNLLLTSIEH----DS----NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKL  166 (285)
Q Consensus        95 nn~~~q~~v~~~g~l~~L~~LL~~----~~----~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v  166 (285)
                      |+...+..+-..+++..+++-+.-    ++    ....-......|+++++ .|.+...|+...|++...-.++. ....
T Consensus       256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~s  333 (536)
T KOG2734|consen  256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVS  333 (536)
T ss_pred             cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHh
Confidence            999888888888999999887752    21    23455677778888887 47788999999999987766665 5556


Q ss_pred             HHHHHHHHHHHhcCCc--hHHHHHHHCCcHHHHHHhcc-cCC------CCCccHHHHHHHHHHHHHhcC
Q psy355          167 VIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLID-IED------ALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       167 ~~ka~~~l~~L~~~~~--~~~~~l~~~g~v~~L~~lL~-~~~------~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +..|.-++-+++.+.+  ..+..+++.+++..+..+.. .|.      -.-...-|+....|+++...+
T Consensus       334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            6677778888888765  78889999888876665543 330      012345688899998888766

>KOG2025|consensus

Probab=96.35  E-value=0.33  Score=48.12  Aligned_cols=129  Identities=18%  Similarity=0.211  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      .+..+.-+..+-.-..+.|.-++|+. |-+..+++-..+++..||.+.+.+|+.+..++...-+ .+-.+....+..-+.
T Consensus        59 ~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~  136 (892)
T KOG2025|consen   59 PDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHh
Confidence            45566666666666677888888774 6678888888999999999999999999976654433 334455555554444


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLI  174 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l  174 (285)
                       +..+.||..|+.|||.+=. .+..-    +......+..+++.+ ++.||+.|...|
T Consensus       137 -Drep~VRiqAv~aLsrlQ~-d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  137 -DREPNVRIQAVLALSRLQG-DPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             -ccCchHHHHHHHHHHHHhc-CCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence             2457899999999999742 22111    123445666677764 578877665444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.30  E-value=0.19  Score=45.33  Aligned_cols=110  Identities=17%  Similarity=0.155  Sum_probs=83.0

Q ss_pred             CCHHHHH-hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-
Q psy355           65 GGLPVLQ-PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-  142 (285)
Q Consensus        65 Gg~~~Lv-~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-  142 (285)
                      |.+..|+ +.++|+++.||..|.+++|-++--+......     .++.+.+.++. .+..++..|+.+|..++.-+... 
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455555 6899999999999999999999877643332     47888888876 47899999999999987654432 


Q ss_pred             HHHHHh-------cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          143 LKEFIK-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       143 ~~~f~~-------~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      ......       ..-+..+.+.|.+.++++|.-|+-.++.|.-.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~  144 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS  144 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            111111       23456778888888999999999999998765

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.29  E-value=1.6  Score=44.67  Aligned_cols=241  Identities=15%  Similarity=0.142  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh----cCCC----HHHHHHHHHHHHHH
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL----EGSD----PELRWRAAETVADI   92 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL----~s~~----~~vr~~A~~~lg~~   92 (285)
                      .+.|-..+..+.+....-+.....+.-|.+++.-..|.+.+.+.|+++.|+..|    +++.    +.+-..-+.+|..+
T Consensus       119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~l  198 (802)
T PF13764_consen  119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESL  198 (802)
T ss_pred             HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHH
Confidence            444444444444332222334444555555565567899999999999998755    4555    78888888888888


Q ss_pred             hhCCHH----HHHHHHhcC--------cHHHHHHhhccC---CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHH
Q psy355           93 VQNNPF----SQNFIIQTD--------FLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR  157 (285)
Q Consensus        93 a~nn~~----~q~~v~~~g--------~l~~L~~LL~~~---~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~  157 (285)
                      .+.-..    .........        -+..|++.+.+.   .++.+....+..|..++.|++...+.+++  =+.+.++
T Consensus       199 l~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p~l~  276 (802)
T PF13764_consen  199 LSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKPYLD  276 (802)
T ss_pred             HHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHHhcC
Confidence            753221    001111122        377778777753   35788888999999999999998877763  2222222


Q ss_pred             h--hc---cCcHHHHHHHHHHHHHHhcC------CchHHHHHHHCCcHHHHHHhcccC--C---CCCcc--------HHH
Q psy355          158 C--IQ---SKKEKLVIKSCFLIACLCTD------NNQVKQVLLSMGMVEQMCVLIDIE--D---ALDTE--------MNE  213 (285)
Q Consensus       158 ~--L~---~~~~~v~~ka~~~l~~L~~~------~~~~~~~l~~~g~v~~L~~lL~~~--~---~~d~~--------~~e  213 (285)
                      +  +.   +++.++.   .-.++.++.+      +...++.+++.|++...+.+|...  .   ..+++        ..-
T Consensus       277 f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp  353 (802)
T PF13764_consen  277 FDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP  353 (802)
T ss_pred             hhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence            1  11   1122222   2333444433      347899999999999888887764  0   01122        235


Q ss_pred             HHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcC
Q psy355          214 HLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFE  273 (285)
Q Consensus       214 ~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~  273 (285)
                      .+|..|.-++.+++..+..-.  . .+.. +=|+++....   ...+-..|.++|+..-.
T Consensus       354 ~iL~lL~GLa~gh~~tQ~~~~--~-~~l~-~lH~LEqvss---~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  354 YILRLLRGLARGHEPTQLLIA--E-QLLP-LLHRLEQVSS---EEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHhcCHHHHHHHH--h-hHHH-HHHHhhcCCC---ccchHHHHHHHHHHHhc
Confidence            578888888888764332211  1 1111 1134444442   34666788888877654

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.28  E-value=0.05  Score=44.37  Aligned_cols=146  Identities=15%  Similarity=0.172  Sum_probs=98.9

Q ss_pred             CHHHHHhhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355           66 GLPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        66 g~~~Lv~lL~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      .+..++..|.  ...+++|..|+-++..+-   +..++.+.+ -+-..+-.++.. .+..-...++.+++.+--+.|...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHH
Confidence            4566777555  478899999999999985   333443322 122333334443 223467789999999998888876


Q ss_pred             HHHHhc-CcHHHHHHhhc--cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCcc-HHHHHHHHH
Q psy355          144 KEFIKR-DGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE-MNEHLLSAL  219 (285)
Q Consensus       144 ~~f~~~-~gi~~L~~~L~--~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~-~~e~al~aL  219 (285)
                      ..++.. |-.+.++..+.  +.+.+++..++-+++.-|..  ..++..+...+++.|-.+++.+  .+.. ++..|+-+|
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~--~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNS--KDDSEIRVLAAVGL  154 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTC--C-HH-CHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccc--cchHHHHHHHHHHH
Confidence            666654 45577788888  77999999999999986654  4555666667889999999654  1444 677776665


Q ss_pred             H
Q psy355          220 A  220 (285)
Q Consensus       220 ~  220 (285)
                      .
T Consensus       155 ~  155 (157)
T PF11701_consen  155 C  155 (157)
T ss_dssp             H
T ss_pred             h
Confidence            4

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0212|consensus

Probab=96.26  E-value=0.44  Score=46.12  Aligned_cols=203  Identities=15%  Similarity=0.206  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHH----HHHH-H-HHHHhhcCcchHHHHHHcC-CHHHHHhhhcCCC
Q psy355            6 RGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDIC----IGAL-D-NLSDYVCSIDYANDFLKMG-GLPVLQPLLEGSD   78 (285)
Q Consensus         6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~----~~al-~-~L~~lv~~~dna~~~~~~G-g~~~Lv~lL~s~~   78 (285)
                      ..|++|..+-...+-.-..-.++..+-.-..+.+++    .... . .|.-++....-... ++.| .+..+.++|.++.
T Consensus       271 l~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~  349 (675)
T KOG0212|consen  271 LTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDR  349 (675)
T ss_pred             HHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcch
Confidence            368888887765554444444444332222221221    1111 1 23333332111111 3334 3567788999999


Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH---
Q psy355           79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL---  155 (285)
Q Consensus        79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L---  155 (285)
                      .+-|..++.-|-.+-.+.|. |-.+.....++.|++-|+. .+..|...++.-++++|.+....       |-++.+   
T Consensus       350 ~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~~s~~~~-------~~~~fl~sL  420 (675)
T KOG0212|consen  350 EETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASICSSSNSP-------NLRKFLLSL  420 (675)
T ss_pred             HHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHhcCcccc-------cHHHHHHHH
Confidence            99999999999988877664 6667777899999999995 66789999999999999864331       224444   


Q ss_pred             HHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          156 LRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       156 ~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ++..+.+..-+..++.+.++.||.- +++        .+-..++.+|...  .+.++...-..+|..++-.+|+
T Consensus       421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE--------~IYr~~a~ILe~e--~nl~FAstMV~~Ln~iLlTStE  484 (675)
T KOG0212|consen  421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAE--------RIYRSIADILERE--ENLKFASTMVQALNTILLTSTE  484 (675)
T ss_pred             HHHHhhhhHHHHhhhhHHHHHHHHHhCHH--------HHHHHHHHHHhcc--ccchHHHHHHHHHHhhhcccHH
Confidence            4444456677888999999988864 332        2334455555543  2566666666666666655554

>KOG1059|consensus

Probab=96.24  E-value=0.093  Score=51.89  Aligned_cols=175  Identities=20%  Similarity=0.219  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCC
Q psy355           42 IGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN  121 (285)
Q Consensus        42 ~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~  121 (285)
                      --||.-|..++- .|-|+|+.     +-++.||+|+.|-+|..|.-++-.+.---|.   ++  ...+|.|..-|.. +|
T Consensus       127 giAL~GLS~fvT-pdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeD-pD  194 (877)
T KOG1059|consen  127 GLALSGLSCIVT-PDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLED-PD  194 (877)
T ss_pred             hheecccccccC-chhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccC-CC
Confidence            345666666663 57788754     5678899999999999999999988765554   33  3479999999995 78


Q ss_pred             HHHHHHHHHHHHHHhhCChHhHHHH----H------hcC-cHHHHHHhh---ccCcHHHHHHHHHHHHHHhcCCc-----
Q psy355          122 TTVQVKSLYAVSCLVRDNEECLKEF----I------KRD-GFSVLLRCI---QSKKEKLVIKSCFLIACLCTDNN-----  182 (285)
Q Consensus       122 ~~v~~~a~~ALs~l~r~~~~~~~~f----~------~~~-gi~~L~~~L---~~~~~~v~~ka~~~l~~L~~~~~-----  182 (285)
                      ++|+..|+..|+-++|-+|.+.-.+    .      ..| .+=.++.++   ..-.+++.+|..-=|.++..+..     
T Consensus       195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLl  274 (877)
T KOG1059|consen  195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLL  274 (877)
T ss_pred             chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHH
Confidence            9999999999999999988763222    1      011 111112222   12245666665555555543321     


Q ss_pred             -hHHHHHHH----CC----------cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          183 -QVKQVLLS----MG----------MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       183 -~~~~~l~~----~g----------~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                       +....++.    .|          ++..|-.++..+   |+.++--.|.++.-|+...|.++.
T Consensus       275 YECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fieds---DqNLKYlgLlam~KI~ktHp~~Vq  335 (877)
T KOG1059|consen  275 YECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDS---DQNLKYLGLLAMSKILKTHPKAVQ  335 (877)
T ss_pred             HHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcC---CccHHHHHHHHHHHHhhhCHHHHH
Confidence             11111111    12          456677777777   999999999999999999987553

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=96.15  E-value=0.099  Score=41.40  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhccCCCHH-HHHHHHHHHHHHhh
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT-VQVKSLYAVSCLVR  137 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~~~~~~-v~~~a~~ALs~l~r  137 (285)
                      ++..|.+=|++++|.++..|+.++..++.| .+.+...+...+.+..|.+++....+.. |+.+++..+..-..
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            355677778899999999999999999999 4668888889999999999998754434 89998887776544

Unpublished observations. Domain of unknown function.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.15  E-value=0.011  Score=34.31  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355          108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus       108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      .+|.+++++++ +++.||..|+++|+.++++
T Consensus         1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLND-PSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence            47999999995 7899999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.12  E-value=0.18  Score=44.34  Aligned_cols=184  Identities=14%  Similarity=0.171  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHhhcCcc-hHHH-HHHcCCHHHHHh-------hhcCCC--HHHH---HHHHHHHHHHhhCCHHHHHHH
Q psy355           38 KDICIGALDNLSDYVCSID-YAND-FLKMGGLPVLQP-------LLEGSD--PELR---WRAAETVADIVQNNPFSQNFI  103 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~d-na~~-~~~~Gg~~~Lv~-------lL~s~~--~~vr---~~A~~~lg~~a~nn~~~q~~v  103 (285)
                      .+.+..|+.+|..--+..+ -|-- .+.-|.+..|+.       .|..+.  +..-   ..|+..+-.+|. +|+.+..+
T Consensus         9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F   87 (262)
T PF04078_consen    9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF   87 (262)
T ss_dssp             HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred             cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence            4678999999998877754 3433 356666666643       233322  2222   333344445565 78889999


Q ss_pred             HhcCcHHHHHHhhccC----CCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355          104 IQTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~----~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      +++...-.|...|...    +-+.+|-.++..|+.+++...+ .+.-+.....+|..++.|..++.-.|.-|+|.+..+.
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9998766666666542    1257889999999999986544 4544556788999999999999999999999999998


Q ss_pred             cCCc---------hHHHHHHHCCcHHHHHH-hcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          179 TDNN---------QVKQVLLSMGMVEQMCV-LIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       179 ~~~~---------~~~~~l~~~g~v~~L~~-lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      ..+.         +....+.  .++..++. +...+   ++.+..++.++-..|..+..
T Consensus       168 ~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTSTT
T ss_pred             cchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCC---ChhHHHHHHHHHHHHccCHH
Confidence            7642         1111121  24444444 34445   78888999999988876663

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=96.12  E-value=0.13  Score=41.10  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhh
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r  137 (285)
                      ++..|.+-|+|++|.++..|+.+|-.+++|. +.++..|...+.+.-|++++..     .++..|+.+.+..|-.-..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            5667778889999999999999999999986 5578888899999999999963     2567899988876655443

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2259|consensus

Probab=96.12  E-value=0.027  Score=55.05  Aligned_cols=150  Identities=12%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355           58 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        58 a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r  137 (285)
                      +..++..|++..+|.=|..+--+||..|...++.++++.|.....     ++..|+.++.. ....||-+|+++|-.|+.
T Consensus       366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfND-E~~~VRL~ai~aL~~Is~  439 (823)
T KOG2259|consen  366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFND-EIEVVRLKAIFALTMISV  439 (823)
T ss_pred             ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence            446788899999999888888999999999999999999986654     57789999995 567999999999999877


Q ss_pred             CChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355          138 DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS  217 (285)
Q Consensus       138 ~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~  217 (285)
                      +      -.++..-++.+...|...+.++|...--++.+.=-.+-+....     ++..|...|..    -|+-+...+.
T Consensus       440 ~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k----yPqDrd~i~~  504 (823)
T KOG2259|consen  440 H------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK----YPQDRDEILR  504 (823)
T ss_pred             H------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh----CCCCcHHHHH
Confidence            5      2233445677889999999999998877777643222222221     23344444443    3444566777


Q ss_pred             HHHHHHhcChH
Q psy355          218 ALASLIKDSTE  228 (285)
Q Consensus       218 aL~~l~~~~~~  228 (285)
                      ++..|.++.+.
T Consensus       505 cm~~iGqnH~~  515 (823)
T KOG2259|consen  505 CMGRIGQNHRR  515 (823)
T ss_pred             HHHHHhccChh
Confidence            78887777764

>KOG1967|consensus

Probab=96.11  E-value=0.096  Score=53.05  Aligned_cols=154  Identities=18%  Similarity=0.194  Sum_probs=106.4

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-------------HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNP-------------FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC  134 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-------------~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~  134 (285)
                      ..++.+|++  |++-.+|+.++.-+..+.+             -.+|.+. ...+|.|++.+.+ .+..+|..-+-+||+
T Consensus       818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t-~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFET-APGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhcc-CCccchhHHHHHHHH
Confidence            345555554  3444555666655554433             2233332 3589999999995 456788899999999


Q ss_pred             HhhCChHhHHHHHh--cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHH
Q psy355          135 LVRDNEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN  212 (285)
Q Consensus       135 l~r~~~~~~~~f~~--~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~  212 (285)
                      ...+-|..  .++.  ...+|+|+++|+-+|..+|..+..++.-++...+.....-+ .-+||.++.+=.+.++....+|
T Consensus       894 Vl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  894 VLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence            99876653  2332  34678999999999999999999999988887665554444 2567777776444411126799


Q ss_pred             HHHHHHHHHHHhcChH
Q psy355          213 EHLLSALASLIKDSTE  228 (285)
Q Consensus       213 e~al~aL~~l~~~~~~  228 (285)
                      +.|+.+|..|++.-|.
T Consensus       971 ~~ALqcL~aL~~~~P~  986 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPT  986 (1030)
T ss_pred             HHHHHHHHHHhccCCC
Confidence            9999999999986664

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=96.09  E-value=0.14  Score=40.55  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=61.1

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhC
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~  138 (285)
                      ++..|-+-|++++|.++..|+.+|..++.|... ++..+.....+..|++++..  ..+..|+.+++..|-+-...
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            466777788999999999999999999999755 77778887888889999986  35789999999888776554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.07  E-value=0.077  Score=43.65  Aligned_cols=111  Identities=16%  Similarity=0.244  Sum_probs=78.7

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHhhccCCCHHHHHHHHHHHHHHh---hCChH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEHDSNTTVQVKSLYAVSCLV---RDNEE  141 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~LL~~~~~~~v~~~a~~ALs~l~---r~~~~  141 (285)
                      +..+..+|+++++.-|+.++..++.+++.++  .+.+.+.|  .+..|+..|+...+..+++.|+.+++.|.   ++.|.
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4567789999999999999999999998874  23443443  67889999998777889999999998874   56666


Q ss_pred             hHHHHHhcCcHH----HHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          142 CLKEFIKRDGFS----VLLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       142 ~~~~f~~~~gi~----~L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      -...+..- -++    .++.+++.  ..+...+..+++.+....|
T Consensus       105 l~Rei~tp-~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  105 LTREIATP-NLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             hHHHHhhc-cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            55555432 233    33333332  4666677777777766555

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=96.06  E-value=0.32  Score=44.21  Aligned_cols=167  Identities=16%  Similarity=0.093  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHhc-------C----cHHHHHHhhc---c--CCCHHHHHHHHHHHHHHhhCChH
Q psy355           78 DPELRWRAAETVADIVQNNPFSQNFIIQT-------D----FLNLLLTSIE---H--DSNTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~-------g----~l~~L~~LL~---~--~~~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      .-++|..|+.++-....+|+..|..+++.       +    ....|+.-|-   .  ..++----.|+..++.++++++.
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            56899999999999999999999999863       1    1112333332   1  12333345799999999999998


Q ss_pred             hHHHHHhc------Cc------HHHHHHhhcc-----CcHHHHHHHHHHHHHHhcCCchHHHHHHHCC-cHHHHHHhccc
Q psy355          142 CLKEFIKR------DG------FSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMG-MVEQMCVLIDI  203 (285)
Q Consensus       142 ~~~~f~~~------~g------i~~L~~~L~~-----~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g-~v~~L~~lL~~  203 (285)
                      +.+.....      .|      ++.+..+|..     .+++++.--..+|+.-+.+.|.....+++.| .++.|+.....
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~  210 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ  210 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence            87666532      11      2334444443     3688888888888888888998888888775 77999987554


Q ss_pred             CCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHH
Q psy355          204 EDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFI  247 (285)
Q Consensus       204 ~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~  247 (285)
                      .+..++-++.-+...|+-+...+.   +.+.-++..+.++|.+|
T Consensus       211 ~~~~~~~VqGL~A~LLGicyef~~---~~s~~~R~~l~~ll~~r  251 (312)
T PF04869_consen  211 SSSEDVLVQGLCAFLLGICYEFST---KDSPIPRATLHPLLTKR  251 (312)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHT-S----SCCC-HHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHhcC---CCCCcCHHHHHHHHHHh
Confidence            434455666666666665555442   12222334555555533

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=96.04  E-value=0.11  Score=41.52  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~  101 (285)
                      +.+.++..+++....++-...+ .+.+++..- +.+.+     ++..|.+-|.+++|.++..|+.++..++.|. +.++.
T Consensus         6 ~~~li~kATs~~~~~~Dw~~~l-~icD~i~~~~~~~ke-----a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~   79 (140)
T PF00790_consen    6 ITELIEKATSESLPSPDWSLIL-EICDLINSSPDGAKE-----AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHR   79 (140)
T ss_dssp             HHHHHHHHT-TTSSS--HHHHH-HHHHHHHTSTTHHHH-----HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHHHHHhCcCCCCCCHHHHH-HHHHHHHcCCccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5566666666664433332222 355555442 33333     3567778899999999999999999999997 67888


Q ss_pred             HHHhcCcHHHHHHhhccCCCHH---HHHHHHHHHHHHh
Q psy355          102 FIIQTDFLNLLLTSIEHDSNTT---VQVKSLYAVSCLV  136 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~~~~~~---v~~~a~~ALs~l~  136 (285)
                      .+.....+..|.+++.+.....   |+.+++-.|..-.
T Consensus        80 ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~  117 (140)
T PF00790_consen   80 EVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA  117 (140)
T ss_dssp             HHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence            8888889999999998654444   8888886666544

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0567|consensus

Probab=96.04  E-value=0.33  Score=42.69  Aligned_cols=138  Identities=18%  Similarity=0.244  Sum_probs=79.6

Q ss_pred             CCHHHHHhhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC---
Q psy355           65 GGLPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN---  139 (285)
Q Consensus        65 Gg~~~Lv~lL~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~---  139 (285)
                      .++|+|+..|.  +..|-||..|+.++|.+-.  +         +.++.|-++.+ ++...|+..+.-||-.+-..+   
T Consensus        67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~-dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIK-DPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             hhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhc-CCccccchHHHHHHHHHHHhhccc
Confidence            35888888554  6789999999999998772  2         13344444442 344455555445554432210   


Q ss_pred             ------------hHh-------------------------HHHH--HhcCc---HHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355          140 ------------EEC-------------------------LKEF--IKRDG---FSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus       140 ------------~~~-------------------------~~~f--~~~~g---i~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                                  |..                         ...|  ...||   +..|+..|..++.-.|..++|+++.|
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl  214 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQL  214 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhc
Confidence                        000                         0001  11222   33445556656666677777766655


Q ss_pred             hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      -+           .-.|+.|.+.|... ...+-+|--|+.||..|+...
T Consensus       215 ~s-----------~~ai~~L~k~L~d~-~E~pMVRhEaAeALGaIa~e~  251 (289)
T KOG0567|consen  215 QS-----------PAAIPSLIKVLLDE-TEHPMVRHEAAEALGAIADED  251 (289)
T ss_pred             cc-----------hhhhHHHHHHHHhh-hcchHHHHHHHHHHHhhcCHH
Confidence            22           23567777766643 236788888999999887433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.04  E-value=0.14  Score=49.89  Aligned_cols=155  Identities=14%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH---HHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           64 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF---SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        64 ~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~---~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      .|.+|.|...|++.+..|+......+|.|+.|.|+   .+++.   .+---|+.+|.+ .++++|+.|...+++|.+---
T Consensus       687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiG  762 (975)
T COG5181         687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKS-WNKEIRRNATETFGCISRAIG  762 (975)
T ss_pred             hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcC
Confidence            46789999999999999999999999999999886   12222   122347777876 678999999999999977422


Q ss_pred             Hh---------------HHH---------HHh-cCcHHHHHHhhc---cCcHHHHHHHHHHHHHHhcC-CchHHHHHHHC
Q psy355          141 EC---------------LKE---------FIK-RDGFSVLLRCIQ---SKKEKLVIKSCFLIACLCTD-NNQVKQVLLSM  191 (285)
Q Consensus       141 ~~---------------~~~---------f~~-~~gi~~L~~~L~---~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~  191 (285)
                      ++               ++.         +.+ +|-+.+|-.+|.   ++...+|.-..-+++.+..- +...++++.. 
T Consensus       763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~-  841 (975)
T COG5181         763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS-  841 (975)
T ss_pred             HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            21               111         112 122333333343   34455555443333333221 2223333331 


Q ss_pred             CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                       +.|.|-..|...   |+..|..+...+.+|+-+|+
T Consensus       842 -itPlleDAltDr---D~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         842 -ITPLLEDALTDR---DPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             -hhHHHHhhhccc---chHHHHHHHHHHHHHhcCCC
Confidence             334445555555   77888888888888877765

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.03  E-value=0.44  Score=47.31  Aligned_cols=218  Identities=21%  Similarity=0.179  Sum_probs=119.1

Q ss_pred             HHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----C
Q psy355            3 EANRGFLLDALNSMMVNV-GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----S   77 (285)
Q Consensus         3 ~e~~~~L~~al~~~~~d~-~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~   77 (285)
                      +.-|+|+-+|+......+ +..|++.+   .+..-+..+....+..|...+...+ ..-      +..+..++++    .
T Consensus       378 ~~~r~~~lDal~~aGT~~av~~i~~~I---~~~~~~~~ea~~~l~~l~~~~~~Pt-~e~------l~~l~~L~~~~~~~~  447 (618)
T PF01347_consen  378 EQARKIFLDALPQAGTNPAVKFIKDLI---KSKKLTDDEAAQLLASLPFHVRRPT-EEL------LKELFELAKSPKVKN  447 (618)
T ss_dssp             HHHHHHHHHHHHHH-SHHHHHHHHHHH---HTT-S-HHHHHHHHHHHHHT------HHH------HHHHHHHHT-HHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHhhcCCCC-HHH------HHHHHHHHhCccccC
Confidence            345777777777764332 45555444   3344445555566666666553322 111      3344445543    4


Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHH-----------HHHhcCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355           78 DPELRWRAAETVADIVQNNPFSQN-----------FIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~nn~~~q~-----------~v~~~g~l~~L~~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      ++.++..|+-++|+++..  .|..           ..+....++.|.+.|.   +..+...+..++-||+|+  |++.. 
T Consensus       448 ~~~l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~~-  522 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPES-  522 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GGG-
T ss_pred             ChhHHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCchh-
Confidence            678899999999988742  2222           2333457778877776   335667888999999998  44443 


Q ss_pred             HHHHhcCcHHHHHHhhccC---cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355          144 KEFIKRDGFSVLLRCIQSK---KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  220 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L~~~---~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~  220 (285)
                              ++.|...+...   +..+|..|.|++..+....|..        +.+.|..++... ..++++|-.|..+| 
T Consensus       523 --------i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~-~e~~EvRiaA~~~l-  584 (618)
T PF01347_consen  523 --------IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNT-TEDPEVRIAAYLIL-  584 (618)
T ss_dssp             --------HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-T-TS-HHHHHHHHHHH-
T ss_pred             --------hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCC-CCChhHHHHHHHHH-
Confidence                    34445555554   7899999999999887766533        234445555543 23677887776655 


Q ss_pred             HHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHH
Q psy355          221 SLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVL  268 (285)
Q Consensus       221 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il  268 (285)
                        +...|.            ...++.....+. .+.+.++..|...-|
T Consensus       585 --m~~~P~------------~~~l~~i~~~l~-~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  585 --MRCNPS------------PSVLQRIAQSLW-NEPSNQVASFVYSHL  617 (618)
T ss_dssp             --HHT---------------HHHHHHHHHHHT-T-S-HHHHHHHHHHH
T ss_pred             --HhcCCC------------HHHHHHHHHHHh-hCchHHHHHHHHHhc
Confidence              444442            123443334444 567777777776654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1248|consensus

Probab=95.96  E-value=0.89  Score=47.51  Aligned_cols=214  Identities=14%  Similarity=0.101  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHh--cCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCH
Q psy355            5 NRGFLLDALNSM--MVNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDP   79 (285)
Q Consensus         5 ~~~~L~~al~~~--~~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~   79 (285)
                      ..+-|++++..-  ..-..+.+..+...|.++..+  .-.+..++.-|..+++..+ .=-+|+.. .+|-++-+++.-+.
T Consensus       674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~EvIL~~Ke~n~  752 (1176)
T KOG1248|consen  674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPEVILSLKEVNV  752 (1176)
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHhcccccH
Confidence            355677777771  112233344444444444432  2345555555555555444 11133332 24433334477788


Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcC------cHHHHHHhhccC--CC-HHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFIIQTD------FLNLLLTSIEHD--SN-TTVQVKSLYAVSCLVRDNEECLKEFIKRD  150 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g------~l~~L~~LL~~~--~~-~~v~~~a~~ALs~l~r~~~~~~~~f~~~~  150 (285)
                      .-|..|..+|-.++.     -+...+.|      .+..++..+...  .+ ..++...+.|++.+..........-.-.+
T Consensus       753 ~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~  827 (1176)
T KOG1248|consen  753 KARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK  827 (1176)
T ss_pred             HHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            888888888887772     11122223      455555555532  22 23333336777777654332222111233


Q ss_pred             cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      .++.+...|.++...+++.|..++.-++...|...-.-...-+++.+..++...   ...++.++...|..+...+.
T Consensus       828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~---k~~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH---KIKVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhC
Confidence            455666678889999999999999999999886654444445778888887766   77888888888888887774

>KOG4535|consensus

Probab=95.94  E-value=0.028  Score=53.19  Aligned_cols=147  Identities=16%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhh----CCHH---HHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhC
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQ----NNPF---SQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~----nn~~---~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~  138 (285)
                      ..++.-|.+..-.+|..|+|.+|||..    |-|.   .+..+.. -.+..++.+-..  .....|+..|..+|+|+..-
T Consensus       436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv  514 (728)
T KOG4535|consen  436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF  514 (728)
T ss_pred             HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence            344445555667899999999999863    3333   3333322 233444443321  23458999999999998642


Q ss_pred             ChHhHHHHHhc-------CcHHHHHHh-hccCcHHHHHHHHHHHHHHhcCCch-HHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355          139 NEECLKEFIKR-------DGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQ-VKQVLLSMGMVEQMCVLIDIEDALDT  209 (285)
Q Consensus       139 ~~~~~~~f~~~-------~gi~~L~~~-L~~~~~~v~~ka~~~l~~L~~~~~~-~~~~l~~~g~v~~L~~lL~~~~~~d~  209 (285)
                          .+.+++.       +.+..+... .-....+||.+||++++||..+..- .+..=----+++.|+.++.+-  .+=
T Consensus       515 ----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~--~NF  588 (728)
T KOG4535|consen  515 ----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC--KNF  588 (728)
T ss_pred             ----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh--ccc
Confidence                2222221       112222222 2234789999999999999876321 110000112456777777654  266


Q ss_pred             cHHHHHHHHHHH
Q psy355          210 EMNEHLLSALAS  221 (285)
Q Consensus       210 ~~~e~al~aL~~  221 (285)
                      ++|..|..+|..
T Consensus       589 KVRi~AA~aL~v  600 (728)
T KOG4535|consen  589 KVRIRAAAALSV  600 (728)
T ss_pred             eEeehhhhhhcC
Confidence            788888888754

>KOG0213|consensus

Probab=95.87  E-value=0.14  Score=51.00  Aligned_cols=180  Identities=11%  Similarity=0.128  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHc-CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH---HHHHHhcCcHHHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS---QNFIIQTDFLNLLLT  114 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~-Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~---q~~v~~~g~l~~L~~  114 (285)
                      +..=..|.++..++.-++.-.-+-.+ |.+|.|...|++.+..|+..+...+|.||.+.|+.   +++.   .+---|+.
T Consensus       856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLle  932 (1172)
T KOG0213|consen  856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLE  932 (1172)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHH
Confidence            44445566666666555443333332 45799999999999999999999999999988861   2221   12334777


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhhCChHh------------------------HHHHHh-cCcHHHHHHhhc---cCcHHH
Q psy355          115 SIEHDSNTTVQVKSLYAVSCLVRDNEEC------------------------LKEFIK-RDGFSVLLRCIQ---SKKEKL  166 (285)
Q Consensus       115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~------------------------~~~f~~-~~gi~~L~~~L~---~~~~~v  166 (285)
                      +|.+ .++++|+.|...+++|++---++                        +..+.+ +|-+.+|-.+|.   .+...|
T Consensus       933 lLka-hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nV 1011 (1172)
T KOG0213|consen  933 LLKA-HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANV 1011 (1172)
T ss_pred             HHHH-HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHH
Confidence            8876 57899999999999997742221                        111112 122233333333   345555


Q ss_pred             HHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          167 VIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       167 ~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      |.-..-+++.+..- +...++++.  -+.|.|-..|...   |...|..+..++.+|+-+++
T Consensus      1012 QnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDr---D~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1012 QNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDR---DLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             HHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccc---cHHHHHHHHHHHHHHhcCCC
Confidence            55544444444321 112223332  1334445555555   77778888888777776553

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.87  E-value=0.1  Score=43.71  Aligned_cols=144  Identities=19%  Similarity=0.222  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhC-CHHH----HHHHH------hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           80 ELRWRAAETVADIVQN-NPFS----QNFII------QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~n-n~~~----q~~v~------~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      .||..|+.+|..+++. .+..    ...++      ..+.-+.|+.++-.|+++.+|..|+.+++.|..|..+.....-+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            3789999999999988 3321    00111      22355667777776789999999999999999986554333222


Q ss_pred             cC----cH---------------HHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHH--HHHHHCCcHHHHHHhcccCCC
Q psy355          149 RD----GF---------------SVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVK--QVLLSMGMVEQMCVLIDIEDA  206 (285)
Q Consensus       149 ~~----gi---------------~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~--~~l~~~g~v~~L~~lL~~~~~  206 (285)
                      ..    .+               ..|+..|+.. +..+.....-+++.|+...|..+  ..++ ..++..+..++.+.  
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~--  157 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHR--  157 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcC--
Confidence            22    12               2445556654 57777888888888988877443  1121 12344555667776  


Q ss_pred             CCccHHHHHHHHHHHHHhcCh
Q psy355          207 LDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       207 ~d~~~~e~al~aL~~l~~~~~  227 (285)
                       |++++..++.++..++...+
T Consensus       158 -d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  158 -DPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             -CCcHHHHHHHHHHHHHcCCC
Confidence             99999999999999887654

>KOG0301|consensus

Probab=95.83  E-value=0.74  Score=45.37  Aligned_cols=157  Identities=20%  Similarity=0.240  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcC----CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMG----GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  113 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~G----g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~  113 (285)
                      .+.+..||+.|+.++...-....|+..-    -+..+++.++ .++..+..++++|.|+-.| +..++.+...  +..+.
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~  633 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL  633 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence            4668899999999987765555565522    2334444444 6688899999999999976 7777777654  33332


Q ss_pred             Hhhc---cCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc-----CcHHHHHHHHHHHHHHhcCCchH
Q psy355          114 TSIE---HDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQV  184 (285)
Q Consensus       114 ~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~-----~~~~v~~ka~~~l~~L~~~~~~~  184 (285)
                      ..+.   +.++..++    -|++.++-++.-. .+.-.+.+|.+.+..++..     ++....-++.-++.+|+..++..
T Consensus       634 ~~~~~~~s~~~knl~----ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~  709 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQ----IALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV  709 (745)
T ss_pred             hhhhhhhcccchhHH----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence            2222   11223333    2333333322211 1111235788877777654     24445556777888998887666


Q ss_pred             HHHHHHCCcHHHHHHhccc
Q psy355          185 KQVLLSMGMVEQMCVLIDI  203 (285)
Q Consensus       185 ~~~l~~~g~v~~L~~lL~~  203 (285)
                      ++.... --+..+++-++.
T Consensus       710 ~~~A~~-~~v~sia~~~~~  727 (745)
T KOG0301|consen  710 IQLAKN-RSVDSIAKKLKE  727 (745)
T ss_pred             HHHHHh-cCHHHHHHHHHH
Confidence            554443 345555555554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.81  E-value=0.028  Score=46.76  Aligned_cols=92  Identities=21%  Similarity=0.392  Sum_probs=69.1

Q ss_pred             HHHHHHHHhh--cCcchHHHHHHcCCHHHHHhhhcC---------CCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCcHH
Q psy355           43 GALDNLSDYV--CSIDYANDFLKMGGLPVLQPLLEG---------SDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLN  110 (285)
Q Consensus        43 ~al~~L~~lv--~~~dna~~~~~~Gg~~~Lv~lL~s---------~~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~l~  110 (285)
                      ..+..|.-..  ..+++...|+..||+..|+.+|..         .+..+...++++|-.++ |++.....+++ .++++
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence            3444444443  446788999999999999998762         44588999999998888 66666666665 68999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355          111 LLLTSIEHDSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus       111 ~L~~LL~~~~~~~v~~~a~~ALs~l~  136 (285)
                      .|...|.+ ++..+|.-++..|+.+|
T Consensus       162 ~i~~~L~s-~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDS-PNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence            99999986 67899999999999876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG3036|consensus

Probab=95.79  E-value=1.2  Score=38.95  Aligned_cols=185  Identities=15%  Similarity=0.194  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHhhcC-cchHHHH-HHcCCHHHHHh-hhc----------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355           39 DICIGALDNLSDYVCS-IDYANDF-LKMGGLPVLQP-LLE----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ  105 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~-~dna~~~-~~~Gg~~~Lv~-lL~----------s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~  105 (285)
                      ..++.||.+|..--+. .|.|.-+ +..|....++. .+.          ++...-|.--+-+|=.++..+|+.+..|++
T Consensus        39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~  118 (293)
T KOG3036|consen   39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR  118 (293)
T ss_pred             chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence            5677888888887765 3555544 44454444433 221          223344544444555556678999999999


Q ss_pred             cCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          106 TDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       106 ~g~l~~L~~LL~~----~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      +..=-.|-..|..    .+.+-.|-.++..|+.++.........|+ ..+.+|..++.+..++.-.|.-|+|.+..+...
T Consensus       119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld  198 (293)
T KOG3036|consen  119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD  198 (293)
T ss_pred             ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence            8654444444442    35578999999999999998766655555 578899999999999999999999999988766


Q ss_pred             Cch---H---HHHHHH-CCcHHHHH-HhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          181 NNQ---V---KQVLLS-MGMVEQMC-VLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       181 ~~~---~---~~~l~~-~g~v~~L~-~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +..   .   .+.+.. .-++..++ .+.+.+   +..+..+++++...|..+.
T Consensus       199 D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p---s~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  199 DVGLYYICQTAERFSAVALVLGKMVFQLVSMP---SPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCH
Confidence            431   1   111111 12333333 444556   8899999999998876443

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=95.72  E-value=0.19  Score=44.38  Aligned_cols=196  Identities=16%  Similarity=0.145  Sum_probs=115.0

Q ss_pred             CCHHhHHHHHHHHHHhcCC------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCC--HHHHHh
Q psy355            1 MNEANRGFLLDALNSMMVN------VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGG--LPVLQP   72 (285)
Q Consensus         1 m~~e~~~~L~~al~~~~~d------~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg--~~~Lv~   72 (285)
                      |++++...|++.++....+      ......-.+.++..  ...+.+..+++-++-++-....+..+...++  ...+..
T Consensus        36 l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~  113 (268)
T PF08324_consen   36 LSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLST  113 (268)
T ss_dssp             S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHH
Confidence            5677788888888777522      12222222222222  3346799999999999887776655655542  344444


Q ss_pred             hhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-C-cHHHHHHhhccCC---CHHHHHHHHHHHHHHhhCChHhH
Q psy355           73 LLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT-D-FLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        73 lL~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~-g-~l~~L~~LL~~~~---~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      ++.    +..+..+.-++++++|+-.+.+. ++.+.+. + .+...+..+....   +..+|..++..+-|++.......
T Consensus       114 ~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~  192 (268)
T PF08324_consen  114 LISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR  192 (268)
T ss_dssp             HHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            433    35789999999999999986554 4455443 3 3444444444322   57888888887777753211100


Q ss_pred             H-HHHhcCcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHH
Q psy355          144 K-EFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV  199 (285)
Q Consensus       144 ~-~f~~~~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~  199 (285)
                      . .=....-+..+++.+..  .+.+..-++.-++++|+..++.........|+-..+..
T Consensus       193 ~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~  251 (268)
T PF08324_consen  193 SDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSK  251 (268)
T ss_dssp             S-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHH
Confidence            0 00000123455553332  58899999999999999777666555554555544433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.70  E-value=0.97  Score=44.53  Aligned_cols=185  Identities=15%  Similarity=0.115  Sum_probs=107.7

Q ss_pred             HhHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----CC
Q psy355            4 ANRGFLLDALNSMM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----SD   78 (285)
Q Consensus         4 e~~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~~   78 (285)
                      .-|.|+..|+.... ..-+..|++   .+.+..-+..+...++-.+...+...+ ..      .+..+..++++    ++
T Consensus       341 ~~r~~~~Dal~~~GT~~a~~~i~~---~i~~~~~~~~ea~~~~~~~~~~~~~Pt-~~------~l~~l~~l~~~~~~~~~  410 (574)
T smart00638      341 KARRIFLDAVAQAGTPPALKFIKQ---WIKNKKITPLEAAQLLAVLPHTARYPT-EE------ILKALFELAESPEVQKQ  410 (574)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHhhhcCC-HH------HHHHHHHHhcCcccccc
Confidence            44677777777664 222333333   344444445555566666655553322 11      24455566654    36


Q ss_pred             HHHHHHHHHHHHHHhh----CCHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355           79 PELRWRAAETVADIVQ----NNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus        79 ~~vr~~A~~~lg~~a~----nn~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                      +.++..|.-++|+++.    +++.+.. .+-...++.|...|..   ..+...+.-++-||+|+  |++.....+     
T Consensus       411 ~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~~l-----  482 (574)
T smart00638      411 PYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIKVL-----  482 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHHHH-----
Confidence            6788888988888763    2222221 1223477777777753   23445567788999996  455544333     


Q ss_pred             HHHHHHhhc---cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          152 FSVLLRCIQ---SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       152 i~~L~~~L~---~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                          ...+.   ..+..+|..|.|++..++...|..        +-+.|..++... ..++++|-.|..+|
T Consensus       483 ----~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~-~e~~EvRiaA~~~l  540 (574)
T smart00638      483 ----EPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNR-AEPPEVRMAAVLVL  540 (574)
T ss_pred             ----HHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCC-CCChHHHHHHHHHH
Confidence                23332   236899999999999887665532        233444555543 23677887776665

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=95.70  E-value=0.64  Score=42.32  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHHhhCChHhHHHHHhc--------C---cHHHHHHhhc------cCcHHHHHHHHHHHHHHhcCCch
Q psy355          121 NTTVQVKSLYAVSCLVRDNEECLKEFIKR--------D---GFSVLLRCIQ------SKKEKLVIKSCFLIACLCTDNNQ  183 (285)
Q Consensus       121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~--------~---gi~~L~~~L~------~~~~~v~~ka~~~l~~L~~~~~~  183 (285)
                      .-.+|..|++++-+.+.+|+..+.+|++.        +   ....|.+.|-      +.++---.-|+.++.++..++++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            56899999999999999999999999842        1   1112444444      23444456799999999999888


Q ss_pred             HHHHHHHC------------CcHHHHHHhcccC--CCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHH
Q psy355          184 VKQVLLSM------------GMVEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKE  249 (285)
Q Consensus       184 ~~~~l~~~------------g~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  249 (285)
                      .++.+.+-            ..+..+..+|-..  .+.++.++.-.|..|..-+-++|.++..+-...-++..+++. . 
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~-~-  208 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEF-S-  208 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHH-H-
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHH-h-
Confidence            87766542            2345566665552  134788888889999999999999999886666566555553 1 


Q ss_pred             HccChHhhHHHHHHHHHHHHHhcC
Q psy355          250 KHAGNEVYHKELEHVNSVLTEVFE  273 (285)
Q Consensus       250 ~l~~~~e~~~~~~~~~~il~~~f~  273 (285)
                       -+...+..-+-..|.=+|=.|+.
T Consensus       209 -~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  209 -NQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             -S--TCCCHHHHHHHHHHHHHHHH
T ss_pred             -hcCCCCcchHHHHHHHHHHHHHH
Confidence             12222334444566666655543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.69  E-value=1.9  Score=42.02  Aligned_cols=187  Identities=11%  Similarity=0.135  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCC--H-HHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGG--L-PVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  113 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg--~-~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~  113 (285)
                      ..-+..++..+.+.++..+. .+++.+.-  + .+...-++. ++..+|-.|+.+|.+-.   ..+|..+-..+-...+.
T Consensus       148 ~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~m  223 (858)
T COG5215         148 VSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYFM  223 (858)
T ss_pred             hHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchhh
Confidence            46789999999999998764 45544332  2 233334544 78899999999998722   22333333333333333


Q ss_pred             Hhh---ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH---H-
Q psy355          114 TSI---EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK---Q-  186 (285)
Q Consensus       114 ~LL---~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~---~-  186 (285)
                      +..   ....+.+++.+|..++..|..-+=.-.+...+.-......+.+++++.++...|.-.-+.+|.+.-+.-   + 
T Consensus       224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~  303 (858)
T COG5215         224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY  303 (858)
T ss_pred             eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence            322   124678999999988888876554445555555566778899999999999999999998886521110   0 


Q ss_pred             ------------HHHHCCcHHHHHHhcccC----CCCCccHHHHHHHHHHHHHhcChH
Q psy355          187 ------------VLLSMGMVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       187 ------------~l~~~g~v~~L~~lL~~~----~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                                  .-.-..++|-|.+||...    +.+|-.+.-.|..+|.-.++.+.+
T Consensus       304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd  361 (858)
T COG5215         304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD  361 (858)
T ss_pred             cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence                        111134789999999874    233445666777777766666643

>KOG4653|consensus

Probab=95.69  E-value=0.59  Score=47.31  Aligned_cols=192  Identities=15%  Similarity=0.095  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      .+...+++..+.++..  --+-.++..|..++++-+-+.....-|.+...+..|++.++-|--.|.+.+..+|.      
T Consensus       726 ~e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------  797 (982)
T KOG4653|consen  726 IEPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------  797 (982)
T ss_pred             HHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence            4456666655555442  45778899999999987766677778889999999999999998888888888774      


Q ss_pred             HHHHhcCcHHHHHHhhccCCC---HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355          101 NFIIQTDFLNLLLTSIEHDSN---TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~---~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                        +....++|.|...-.+.++   +..+-+.--||.++++---+-...+.+ -.+...++..+.++...|..++..++.+
T Consensus       798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L  874 (982)
T KOG4653|consen  798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL  874 (982)
T ss_pred             --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence              3556788988874332221   123344446666665532222222221 3445556677778899999999999999


Q ss_pred             hcCCchHH-HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          178 CTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       178 ~~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      |.-..-.. ..+.  .++..++.+...+  +.+.+|..|...+..++.+-.
T Consensus       875 cq~~a~~vsd~~~--ev~~~Il~l~~~d--~s~~vRRaAv~li~~lL~~tg  921 (982)
T KOG4653|consen  875 CQLLAFQVSDFFH--EVLQLILSLETTD--GSVLVRRAAVHLLAELLNGTG  921 (982)
T ss_pred             HHHHhhhhhHHHH--HHHHHHHHHHccC--CchhhHHHHHHHHHHHHhccc
Confidence            87533111 2222  3556666776665  467899999999998887664

>KOG3036|consensus

Probab=95.67  E-value=1.3  Score=38.64  Aligned_cols=169  Identities=16%  Similarity=0.179  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHHH---hccCCC---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----CCCHHHHHHHHH
Q psy355           19 NVGAELEKIIKTL---KENQDQ---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAE   87 (285)
Q Consensus        19 d~~~~mk~~l~~l---~~~~~~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s~~~~vr~~A~~   87 (285)
                      -..-.+++++.+.   +.+.-+   ......||.-|...+.-.|....|.+...=-.|.++|.     .+..-+|-.++-
T Consensus        68 ~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLG  147 (293)
T KOG3036|consen   68 TMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLG  147 (293)
T ss_pred             hHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHH
Confidence            4456677777643   333222   35677899999999998999999998874445556665     356789999999


Q ss_pred             HHHHHhhCCH-HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH------hHHHHHhcC-cH-HHHHHh
Q psy355           88 TVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE------CLKEFIKRD-GF-SVLLRC  158 (285)
Q Consensus        88 ~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~------~~~~f~~~~-gi-~~L~~~  158 (285)
                      +||.+++|.+ ++-..++..+++|..++.+.. .++.-+.-|.+-+.-|.-+...      ..+.|...+ .+ ..+.++
T Consensus       148 VIgaLvk~dd~eVi~fLl~TeIVPlCLrime~-GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l  226 (293)
T KOG3036|consen  148 VIGALVKNDDQEVIRFLLTTEIVPLCLRIMES-GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQL  226 (293)
T ss_pred             HHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc-ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9999999765 355566788999999999997 4567788888888887654221      123333222 12 234455


Q ss_pred             hccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355          159 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL  189 (285)
Q Consensus       159 L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~  189 (285)
                      .+.++.++-+.+..+...|+. +|..+..+-
T Consensus       227 ~~~ps~RllKhviRcYlrLsd-nprar~aL~  256 (293)
T KOG3036|consen  227 VSMPSPRLLKHVIRCYLRLSD-NPRARAALR  256 (293)
T ss_pred             hcCCCHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            556788888888887777744 555554443

>KOG1248|consensus

Probab=95.64  E-value=2.1  Score=44.90  Aligned_cols=167  Identities=17%  Similarity=0.147  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcC
Q psy355            5 NRGFLLDALNSMM----VNVGAELEKIIKTLKENQDQ---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEG   76 (285)
Q Consensus         5 ~~~~L~~al~~~~----~d~~~~mk~~l~~l~~~~~~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s   76 (285)
                      ++.||+-....++    .|....+++.+.-+....++   .-....-|+.+.-++.-.++...    .++-.+.. ..++
T Consensus       590 ~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v----s~l~~v~~~~e~~  665 (1176)
T KOG1248|consen  590 RSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV----SKLFTVDPEFENS  665 (1176)
T ss_pred             HHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH----HHHHHhhHHhhcc
Confidence            5678887774442    45566677766665554431   11222233333333322222111    01114444 4556


Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355           77 SDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV  154 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~  154 (285)
                      .++.+|..|-++|+.+.+. |.++..+.+.  .+...|.+-+++ .+...+..++.+|+.|.+.++.-...|+-.....+
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev  743 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV  743 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            7999999999999999987 5555444332  345556666665 45689999999999999998854445664454555


Q ss_pred             HHHhhccCcHHHHHHHHHHHHHHh
Q psy355          155 LLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       155 L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      ++.. +..+.+.|+.|--+|..++
T Consensus       744 IL~~-Ke~n~~aR~~Af~lL~~i~  766 (1176)
T KOG1248|consen  744 ILSL-KEVNVKARRNAFALLVFIG  766 (1176)
T ss_pred             HHhc-ccccHHHHhhHHHHHHHHH
Confidence            5554 7678889998888888887

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.63  E-value=0.18  Score=40.52  Aligned_cols=73  Identities=21%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      ++..|.+=|+|++|.++..|+.+|..++.|.. .++..|...+.+..|.+++....+..|+.+++..|-.-...
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            46677777889999999999999999999876 47778888999999999998756789999999888776543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0212|consensus

Probab=95.63  E-value=0.71  Score=44.70  Aligned_cols=173  Identities=18%  Similarity=0.222  Sum_probs=115.8

Q ss_pred             HHHhhcCcchHHHHHHcC-CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHH
Q psy355           48 LSDYVCSIDYANDFLKMG-GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV  126 (285)
Q Consensus        48 L~~lv~~~dna~~~~~~G-g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~  126 (285)
                      |.++...|++.....+.+ .++.++.-++++++.+|..|..-|-..++--+. .-...-.|++..++.++.......++.
T Consensus       232 l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~  310 (675)
T KOG0212|consen  232 LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKE  310 (675)
T ss_pred             HHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHH
Confidence            444444455544443333 567888899999999999999888888875442 223344678888888888644334544


Q ss_pred             HHHHH---HHHHhhCChHhHHHHHhcC-cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355          127 KSLYA---VSCLVRDNEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID  202 (285)
Q Consensus       127 ~a~~A---Ls~l~r~~~~~~~~f~~~~-gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~  202 (285)
                      .|...   +..++.. +...+. ++.| .+.++.+.++++....|..+.--|..|-+..|... ......+.+.|..-|.
T Consensus       311 ~a~~~n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLs  387 (675)
T KOG0212|consen  311 YAQMVNGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLS  387 (675)
T ss_pred             HHHHHHHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhc
Confidence            33322   2222221 111111 4444 56888889999999999999988888877766433 2223467788888888


Q ss_pred             cCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          203 IEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       203 ~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      .+   +..+...++..+.+|+++..
T Consensus       388 d~---sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  388 DR---SDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             Cc---hhHHHHHHHHHHHHHhcCcc
Confidence            88   89999999999999998775

>KOG1242|consensus

Probab=95.56  E-value=2.4  Score=41.41  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=102.6

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHH-HHHHHHHHhhCChHhHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK-SLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~-a~~ALs~l~r~~~~~~~~  145 (285)
                      .+.+.++++++.-.-|.-|++.++.++.|+..  ..+.+.+.+..|-..+.. .....++. ++.|.-..+.+--+.++.
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~d-k~~~~~re~~~~a~~~~~~~Lg~~~EP  212 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIID-KKSALNREAALLAFEAAQGNLGPPFEP  212 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcc-cchhhcHHHHHHHHHHHHHhcCCCCCc
Confidence            56777899999999999999999999988764  346778899999988885 43444443 433333333221111111


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      .+ ..-+|.+...+.+...++|..|..++..+.+.-+...-    .-+++.++.-+...   .-+.+..++..|..++..
T Consensus       213 yi-v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~---kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  213 YI-VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEA---KWRTKMASLELLGAMADC  284 (569)
T ss_pred             hH-HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHh
Confidence            11 23445556666667899999999999988776432211    12334444444433   557788999999999988


Q ss_pred             ChHHHhhc
Q psy355          226 STEAQSLC  233 (285)
Q Consensus       226 ~~~~~~~~  233 (285)
                      .|..+..|
T Consensus       285 ap~qLs~~  292 (569)
T KOG1242|consen  285 APKQLSLC  292 (569)
T ss_pred             chHHHHHH
Confidence            88877666

>KOG2025|consensus

Probab=95.54  E-value=1.3  Score=44.05  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHH
Q psy355            7 GFLLDALNSMM--VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELR   82 (285)
Q Consensus         7 ~~L~~al~~~~--~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr   82 (285)
                      +||-....++.  .-+.+.+...+..+-...++  ...+.+.++-|.-+++.+....+-+-.|-...+..=|..-.|.||
T Consensus        64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR  143 (892)
T KOG2025|consen   64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR  143 (892)
T ss_pred             HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence            45555555553  12223344444433332222  356777787777777643333343333444455444556789999


Q ss_pred             HHHHHHHHHHh--hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy355           83 WRAAETVADIV--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC  134 (285)
Q Consensus        83 ~~A~~~lg~~a--~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~  134 (285)
                      .+|..+|+..-  .++++       ..+...+..+++.+++++||+.|+..|++
T Consensus       144 iqAv~aLsrlQ~d~~dee-------~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  144 IQAVLALSRLQGDPKDEE-------CPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             HHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            99999999875  24444       45778899999999999999987766665

>KOG2999|consensus

Probab=95.53  E-value=0.39  Score=46.38  Aligned_cols=158  Identities=13%  Similarity=0.202  Sum_probs=121.9

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC---CHHHHHHHHHHHHHHhhCChHhH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~---~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      ...+...+.++++.-+..|..-+..+.. .+.....++...++..|.+++.++.   ...+....+.|.|.+..+.....
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4567888899999889889999999986 5667888999999999999998643   34677788888888876644333


Q ss_pred             HHHHhcCcHHHHHHhh--ccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355          144 KEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  221 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L--~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~  221 (285)
                      ..+- ..++.....+.  +.-+..+-..|...+-+++.+.+...+.+.+.--+..|+..|...   +..++..|+..+-+
T Consensus       164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~---n~~i~~~aial~na  239 (713)
T KOG2999|consen  164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS---NQRIQTCAIALLNA  239 (713)
T ss_pred             eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc---chHHHHHHHHHHHH
Confidence            3222 22333333332  223666777888889999998888888898999999999999998   99999999999999


Q ss_pred             HHhcChHH
Q psy355          222 LIKDSTEA  229 (285)
Q Consensus       222 l~~~~~~~  229 (285)
                      +...+|+.
T Consensus       240 l~~~a~~~  247 (713)
T KOG2999|consen  240 LFRKAPDD  247 (713)
T ss_pred             HHhhCChH
Confidence            99888764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.49  E-value=0.51  Score=45.87  Aligned_cols=155  Identities=12%  Similarity=0.055  Sum_probs=100.3

Q ss_pred             hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355           72 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus        72 ~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                      .-+++++-.-|..|+.++|.+..+-...+-.-+-..++|.+..+.. ++..-++..++|+++.|+.+-+..+.   ..|-
T Consensus       373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~---p~~H  448 (858)
T COG5215         373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMIIS---PCGH  448 (858)
T ss_pred             HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHhcC---cccc
Confidence            4577899999999999999999764443333333568898888888 57788999999999999875443222   2333


Q ss_pred             HHHHHHhh-c--cCcHHHHHHHHHHHHHHhcCCchHHHH---HHHC---CcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355          152 FSVLLRCI-Q--SKKEKLVIKSCFLIACLCTDNNQVKQV---LLSM---GMVEQMCVLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       152 i~~L~~~L-~--~~~~~v~~ka~~~l~~L~~~~~~~~~~---l~~~---g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                      +++.+... .  .+.+++-...+|.+-+|+.+-+...+.   ++-.   .++..|++--.. ...+...|..+..+|..+
T Consensus       449 l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~-~~Ne~n~R~s~fsaLgtl  527 (858)
T COG5215         449 LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL-ALNESNLRVSLFSALGTL  527 (858)
T ss_pred             ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHHHH
Confidence            33333322 1  246788899999999998763322210   1100   122222221111 112567899999999999


Q ss_pred             HhcChHHHh
Q psy355          223 IKDSTEAQS  231 (285)
Q Consensus       223 ~~~~~~~~~  231 (285)
                      ...+|+.+.
T Consensus       528 i~~~~d~V~  536 (858)
T COG5215         528 ILICPDAVS  536 (858)
T ss_pred             HhhcchhHH
Confidence            999987654

>KOG1058|consensus

Probab=95.49  E-value=0.92  Score=45.42  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQN   95 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n   95 (285)
                      +|.+..+|.|.++-||..|.-+|++|=++
T Consensus       136 ~p~IracleHrhsYVRrNAilaifsIyk~  164 (948)
T KOG1058|consen  136 MPSIRACLEHRHSYVRRNAILAIFSIYKN  164 (948)
T ss_pred             HHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence            35555689999999999999999999887

>KOG2274|consensus

Probab=95.43  E-value=1.9  Score=44.04  Aligned_cols=150  Identities=14%  Similarity=0.159  Sum_probs=103.6

Q ss_pred             HHhHHHHHHHHHHhc-CCH--HHHHHHH-----HHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh
Q psy355            3 EANRGFLLDALNSMM-VNV--GAELEKI-----IKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL   74 (285)
Q Consensus         3 ~e~~~~L~~al~~~~-~d~--~~~mk~~-----l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL   74 (285)
                      +|--.-|.|||.++- .|+  ...|+..     +.++....+++.....+.+-+.+++..-+|...+.. --+|.|+..|
T Consensus       544 ~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil  622 (1005)
T KOG2274|consen  544 DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVL  622 (1005)
T ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHH
Confidence            445556777777763 332  3444443     334444445555555666667777765555555543 3489999999


Q ss_pred             cCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355           75 EGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD  150 (285)
Q Consensus        75 ~s~~----~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~  150 (285)
                      ..+.    +....-|+.+|.++..|.|.---..+-+=++|++.+..-++.+-++-..+--+|+.++...+++....-..+
T Consensus       623 ~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~  702 (1005)
T KOG2274|consen  623 QLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEP  702 (1005)
T ss_pred             cCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCC
Confidence            9877    899999999999999886542222223448999999887767778888899999999988888777777677


Q ss_pred             cHH
Q psy355          151 GFS  153 (285)
Q Consensus       151 gi~  153 (285)
                      |+.
T Consensus       703 g~~  705 (1005)
T KOG2274|consen  703 GHN  705 (1005)
T ss_pred             Ccc
Confidence            765

>KOG1789|consensus

Probab=95.38  E-value=0.36  Score=50.01  Aligned_cols=142  Identities=16%  Similarity=0.225  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHh----cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFIIQ----TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL  155 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~~----~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L  155 (285)
                      +=...++.+|.|+.+-||.....+-.    -|.++.+..+|...++..++.-|+..++-++. +.++...+...|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            34567899999999999976655433    38889999999877778899999998887665 67788888888888888


Q ss_pred             HHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          156 LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       156 ~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +.+|.+ -+..|..+...++.|++. +.......++|++..+..++-..  ..++.|..+...|..+..+.
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~--~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLT--NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhcc--CcHHHHHHHHHHHHHhhhcc
Confidence            888865 466778888999988665 55666777788888777776654  26788888888887776543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.37  E-value=1.8  Score=38.17  Aligned_cols=166  Identities=18%  Similarity=0.225  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhccCC---C---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC-----HHHHHHHHHHH
Q psy355           21 GAELEKIIKTLKENQD---Q---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD-----PELRWRAAETV   89 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~---~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~-----~~vr~~A~~~l   89 (285)
                      +..+++++.+...-..   +   ......||.-|..++...+....|.+....-.|.++|+..+     ..+|-.++.+|
T Consensus        41 ~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVI  120 (262)
T PF04078_consen   41 AALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVI  120 (262)
T ss_dssp             HHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHH
Confidence            4567777776544332   2   25677899999999988899999999997777788887433     57999999999


Q ss_pred             HHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH-------HHh-cCcHHHHHH-hh
Q psy355           90 ADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE-------FIK-RDGFSVLLR-CI  159 (285)
Q Consensus        90 g~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~-------f~~-~~gi~~L~~-~L  159 (285)
                      |.++. +++++-..+++.+++|..++.+.. .++--|.-|.+-+..|.-+ ..+.+.       |.. ...+..++. +.
T Consensus       121 gaLvK~d~~evi~fLl~tEiiplcLr~me~-GselSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~  198 (262)
T PF04078_consen  121 GALVKTDDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLV  198 (262)
T ss_dssp             HHHHTT--HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence            99998 456678888999999999999997 4677888899999888764 222222       221 123333333 33


Q ss_pred             ccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355          160 QSKKEKLVIKSCFLIACLCTDNNQVKQVLL  189 (285)
Q Consensus       160 ~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~  189 (285)
                      ..+++++-+....+-.-|+. +|..+..+.
T Consensus       199 ~~pS~RLLKhIIrCYlRLsd-nprar~aL~  227 (262)
T PF04078_consen  199 KQPSPRLLKHIIRCYLRLSD-NPRAREALR  227 (262)
T ss_dssp             HS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred             cCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence            44577777777776666533 455555444

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1020|consensus

Probab=95.37  E-value=1  Score=48.26  Aligned_cols=155  Identities=16%  Similarity=0.161  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHHhccC--------CC-HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHH
Q psy355           18 VNVGAELEKIIKTLKENQ--------DQ-KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAET   88 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~--------~~-~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~   88 (285)
                      ...-.++|-.+..+.+.+        .+ .-..-.|-+...++...-...+.|-  +-+..++..|..+.+.+|..|+++
T Consensus       762 ~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD--~yLk~Il~~l~e~~ialRtkAlKc  839 (1692)
T KOG1020|consen  762 ITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFD--PYLKLILSVLGENAIALRTKALKC  839 (1692)
T ss_pred             hhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhH--HHHHHHHHHhcCchHHHHHHHHHH
Confidence            344566777777666553        01 1112233333333333333333332  235677788999999999999999


Q ss_pred             HHHHhhCCHHHHH-HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHH
Q psy355           89 VADIVQNNPFSQN-FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLV  167 (285)
Q Consensus        89 lg~~a~nn~~~q~-~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~  167 (285)
                      |..++.-.|.+-. .-++.|+...   +.  ++...||..|+--+|..+-.++.-...++     ..+.+-..++...||
T Consensus       840 lS~ive~Dp~vL~~~dvq~~Vh~R---~~--DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVR  909 (1692)
T KOG1020|consen  840 LSMIVEADPSVLSRPDVQEAVHGR---LN--DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVR  909 (1692)
T ss_pred             HHHHHhcChHhhcCHHHHHHHHHh---hc--cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHH
Confidence            9999987664211 1112222222   22  45679999999999999888887766665     355666777789999


Q ss_pred             HHHHHHHHHHhcCCchH
Q psy355          168 IKSCFLIACLCTDNNQV  184 (285)
Q Consensus       168 ~ka~~~l~~L~~~~~~~  184 (285)
                      +++.-.++.+|.+.|++
T Consensus       910 KRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  910 KRVIKILRDICEETPDF  926 (1692)
T ss_pred             HHHHHHHHHHHHhCCCh
Confidence            99999999999998754

>KOG1991|consensus

Probab=95.31  E-value=0.48  Score=48.52  Aligned_cols=112  Identities=10%  Similarity=0.257  Sum_probs=75.0

Q ss_pred             CCHHHHHhhhc------C--CCHHHHHHHHHHHHHHhh----CCH--HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHH
Q psy355           65 GGLPVLQPLLE------G--SDPELRWRAAETVADIVQ----NNP--FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY  130 (285)
Q Consensus        65 Gg~~~Lv~lL~------s--~~~~vr~~A~~~lg~~a~----nn~--~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~  130 (285)
                      |.++.++..|+      .  .++.-..-|++++|+++.    +.|  ..-+.+    .++.+...+++ +.--+|.+|||
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f----lv~hVfP~f~s-~~g~Lrarac~  484 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF----LVNHVFPEFQS-PYGYLRARACW  484 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH----HHHHhhHhhcC-chhHHHHHHHH
Confidence            34555556555      2  356677889999999883    233  222223    34444456665 45579999999


Q ss_pred             HHHHHh-hCChHhHHHHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchH
Q psy355          131 AVSCLV-RDNEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQV  184 (285)
Q Consensus       131 ALs~l~-r~~~~~~~~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~  184 (285)
                      .++.++ -+.+... .+  ...+....++|. +.+--|+..|+.++..+.++.+..
T Consensus       485 vl~~~~~~df~d~~-~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~  537 (1010)
T KOG1991|consen  485 VLSQFSSIDFKDPN-NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA  537 (1010)
T ss_pred             HHHHHHhccCCChH-HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence            999998 3333221 22  245677788888 678999999999999999886644

>KOG2611|consensus

Probab=95.07  E-value=2.1  Score=40.90  Aligned_cols=196  Identities=15%  Similarity=0.178  Sum_probs=126.5

Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHhhCCH---HHHHHHHhcCcHHHHHHhhccC------CCHHHHHHHHHHHHHHhhCCh
Q psy355           70 LQPLLEGSDPELRWRAAETVADIVQNNP---FSQNFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~---~~q~~v~~~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      +..|+...+.+-|..|+-.+...+.|.+   ..+..+.+.=+++-+=+||.+.      ++...+.-++..|.|.|+...
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5677788888889999999999998754   3455677887888888888752      344667788888999998643


Q ss_pred             Hh-HHHHHhcCcHHHHHHhhccC-cHH------HHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHH
Q psy355          141 EC-LKEFIKRDGFSVLLRCIQSK-KEK------LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN  212 (285)
Q Consensus       141 ~~-~~~f~~~~gi~~L~~~L~~~-~~~------v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~  212 (285)
                      -+ -..++  +-||.|.+.+... ++.      +...+-.+++.+++. +.-.+.++..|.++.+++.-..+   +-..-
T Consensus        96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~---~~~~d  169 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP---DGSHD  169 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC---CCchh
Confidence            32 22233  6789999988753 222      555666666666555 56677888899999999876554   32222


Q ss_pred             -HHHHHHHHHHHhcChHHHhhcccC-cccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCc
Q psy355          213 -EHLLSALASLIKDSTEAQSLCRLE-PLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSL  277 (285)
Q Consensus       213 -e~al~aL~~l~~~~~~~~~~~~~~-~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~  277 (285)
                       +.++..+. +....    -.|-.. .-.|...|...-+..+ ..++.--||.|.-+-..+|+..++
T Consensus       170 ~alal~Vll-l~~~~----~~cw~e~~~~flali~~va~df~-~~~~a~KfElc~lL~~vl~~~~~e  230 (698)
T KOG2611|consen  170 MALALKVLL-LLVSK----LDCWSETIERFLALIAAVARDFA-VLHNALKFELCHLLSAVLSSEYSE  230 (698)
T ss_pred             HHHHHHHHH-HHHHh----cccCcCCHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhCChHH
Confidence             22222222 22111    133221 2255556665545555 446777788887777777776643

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.04  E-value=1.3  Score=40.75  Aligned_cols=153  Identities=13%  Similarity=0.197  Sum_probs=113.4

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT  106 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~  106 (285)
                      ++..|-.+-+..+.-..+-.-|.+++..-.-+.-+....-+..+.++.++++-+|..-|..++-.+-+.++..-..++..
T Consensus       126 il~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~  205 (335)
T PF08569_consen  126 ILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSN  205 (335)
T ss_dssp             HHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34444443344556666677777777665566767777778888899999999999999999999999999877777765


Q ss_pred             C---cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC--hHhHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          107 D---FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN--EECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       107 g---~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~--~~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      +   .+...-+||.+ ++-.+|+.++--|+.+.-+.  -.....++.. .-+..++.+|++++..+|-+|-..+.-++.+
T Consensus       206 n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  206 NYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             THHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            4   56677888987 67899999999999998653  3333455543 3578889999999999999998888877665

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.04  E-value=0.72  Score=43.16  Aligned_cols=141  Identities=16%  Similarity=0.252  Sum_probs=100.5

Q ss_pred             HHHHHcCCHHHHHh-hhcCCC---HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cC--CCHHHHHHHHHH
Q psy355           59 NDFLKMGGLPVLQP-LLEGSD---PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HD--SNTTVQVKSLYA  131 (285)
Q Consensus        59 ~~~~~~Gg~~~Lv~-lL~s~~---~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~--~~~~v~~~a~~A  131 (285)
                      +++.+.|.++.-++ .++++.   +.|-..|+.++..+..|.|.+-..+.+.|..+.+++-+. ..  ++..+-...-.+
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            34555455554444 566643   789999999999999999999999999999999999888 32  345666666688


Q ss_pred             HHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHH--HHHHH----HHHHhcCCchHHHHHHHC--CcHHHHHHh
Q psy355          132 VSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVI--KSCFL----IACLCTDNNQVKQVLLSM--GMVEQMCVL  200 (285)
Q Consensus       132 Ls~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~--ka~~~----l~~L~~~~~~~~~~l~~~--g~v~~L~~l  200 (285)
                      |+.||- |....+.|.+.+.++.+.+++.+++ .+.-.  ..+..    +-.|+++.|..+..+++.  .++..++.+
T Consensus       179 l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~  255 (379)
T PF06025_consen  179 LSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVEL  255 (379)
T ss_pred             HhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            888887 4667889999999999999998864 22222  23444    445667788887776652  233444444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.00  E-value=0.14  Score=36.17  Aligned_cols=67  Identities=10%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355          125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDNNQVKQVLLSMGM  193 (285)
Q Consensus       125 ~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~  193 (285)
                      .+.|+||++++.. ++....-+.+.+.++.++++....+ ..+|--| |..-.|.....+-.+.+-+.|+
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~-fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTC-FYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHH-HHHHHHHhCCHHHHHHHHHcCC
Confidence            5789999999976 5666665556789999999988654 6665555 4455566777777788877775

>KOG4151|consensus

Probab=94.81  E-value=0.82  Score=45.81  Aligned_cols=159  Identities=14%  Similarity=0.123  Sum_probs=113.0

Q ss_pred             HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHH-HHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355           60 DFLKMGGLPVLQPLLEGSDPELRWRAAETVA-DIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        60 ~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg-~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      ..++.||+..|+++..-..+.-+..+..+|. .+.    .-.+..  ...++++.+.+..+..-.-.-.++-|+-|++..
T Consensus       499 ~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~----f~~~~~--~~v~~~~~s~~~~d~~~~en~E~L~altnLas~  572 (748)
T KOG4151|consen  499 KKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID----FPGERS--YEVVKPLDSALHNDEKGLENFEALEALTNLASI  572 (748)
T ss_pred             ccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC----CCCCch--hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence            4688999999999877666677777777776 221    111111  347888888888755444456788999998888


Q ss_pred             ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH-CCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355          139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS-MGMVEQMCVLIDIEDALDTEMNEHLLS  217 (285)
Q Consensus       139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~-~g~v~~L~~lL~~~~~~d~~~~e~al~  217 (285)
                      +....+.+++.-+++.+-..+...++-+|+.++..+.||..+.--..+.+++ ..-++....++...   +..+...+..
T Consensus       573 s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~---~E~~~lA~a~  649 (748)
T KOG4151|consen  573 SESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA---DEKFELAGAG  649 (748)
T ss_pred             chhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh---hhHHhhhccc
Confidence            7777777888888888888888889999999999999998876545555555 34455555555555   6667767777


Q ss_pred             HHHHHHhcCh
Q psy355          218 ALASLIKDST  227 (285)
Q Consensus       218 aL~~l~~~~~  227 (285)
                      ++..|+....
T Consensus       650 a~a~I~sv~~  659 (748)
T KOG4151|consen  650 ALAAITSVVE  659 (748)
T ss_pred             cccchhhcch
Confidence            7766665553

>KOG2137|consensus

Probab=94.72  E-value=0.71  Score=45.87  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=104.1

Q ss_pred             HHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        61 ~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      .++...+|.|...++..+..+|..++.++++++.--+   -.+++.-++|.+-++....++..++..++-+++.++.   
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---  458 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---  458 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence            4556778899999999999999999999999997544   2467777899999997777888999999999999983   


Q ss_pred             HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355          141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                       .++.+.-..-+.++.++.+..++.+.-....+...+....+.- ..++-..++|.++.+...+
T Consensus       459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence             3333433456678888888889988888888777776654433 3444567788777776665

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.66  E-value=0.62  Score=39.31  Aligned_cols=130  Identities=12%  Similarity=0.077  Sum_probs=87.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH---------------hcCcHHHHHHhhccC-----CCHHHHHHHHHHHH
Q psy355           74 LEGSDPELRWRAAETVADIVQNNPFSQNFII---------------QTDFLNLLLTSIEHD-----SNTTVQVKSLYAVS  133 (285)
Q Consensus        74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~---------------~~g~l~~L~~LL~~~-----~~~~v~~~a~~ALs  133 (285)
                      +..+.......++.+|+|+++....+...+-               +...+..|+.++..+     ....-.-..++.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            4455566777889999999986665442221               223678888887751     12234456788999


Q ss_pred             HHhhCChHhHHHHHhcC--c--HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH--CCcHHHHHHhcccC
Q psy355          134 CLVRDNEECLKEFIKRD--G--FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS--MGMVEQMCVLIDIE  204 (285)
Q Consensus       134 ~l~r~~~~~~~~f~~~~--g--i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~--~g~v~~L~~lL~~~  204 (285)
                      |+++ .+...+.|++..  .  +..|+.++.+.+.-=|.=++.+|.|.|-........+-+  .++++.|+--|..+
T Consensus        84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence            9988 577787787532  3  566777777775555566789999999887655433332  36777777777765

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1061|consensus

Probab=94.64  E-value=0.3  Score=48.66  Aligned_cols=70  Identities=26%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      +.++.+++++.++.+|..|+-.++++=.-++.   .+...|.++.|..++. ++++.|...|+.|++.|...++
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence            56888899999999999999999998876654   5778999999999999 5778999999999999987665

>KOG1820|consensus

Probab=94.60  E-value=1.2  Score=45.65  Aligned_cols=173  Identities=14%  Similarity=0.153  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCC---HHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGG---LPVLQPL-LEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLL  113 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg---~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~  113 (285)
                      .++..|++.+-..+++.-   --...|.   +-.+++. +...+..|...|+.+|+-++..... ++.++  .+++|.|+
T Consensus       268 K~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--~~v~p~ll  342 (815)
T KOG1820|consen  268 KDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--KNVFPSLL  342 (815)
T ss_pred             HHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--HhhcchHH
Confidence            678889999888887533   1122222   2334442 3457889999999999999986554 33333  46889999


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCC
Q psy355          114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMG  192 (285)
Q Consensus       114 ~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g  192 (285)
                      .-+.. ....++..+.-++=.++..++.       ....+.+..+++++++.++.....++...+.. ++.....---.+
T Consensus       343 d~lke-kk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~  414 (815)
T KOG1820|consen  343 DRLKE-KKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKT  414 (815)
T ss_pred             HHhhh-ccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHH
Confidence            88885 4445554443333333222221       12345678889999999999966666555554 333333333346


Q ss_pred             cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +++.++......   +.++|..++.++..+.+...
T Consensus       415 l~p~~~~~~~D~---~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  415 LVPHLIKHINDT---DKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             HhHHHhhhccCC---cHHHHHHHHHHHHHHHHHhh
Confidence            778888887777   99999999999999887664

>KOG1058|consensus

Probab=94.40  E-value=3.3  Score=41.68  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      +..+..+|+++++.|+-.|+-.|-++. ++|..-.+     +...++.|+-..++-.++--.+.-|+.+..++....+  
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~--  316 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ--  316 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH--
Confidence            455667888888888888888877776 56653332     3455666766555556777677777777644444332  


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                         |.+--+++.|++++..+++|+..+.-.|+++.. ...-.+.+..+.    +--....++.-++|.-.+.++.+.+..
T Consensus       317 ---~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~----kT~~~e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  317 ---GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVM----KTHNEESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             ---HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHH----hccccccccchHHHHHHHHHHHHHhhc
Confidence               334456788999999999999999988887632 111111111111    110100112345677777777777766


Q ss_pred             ChH
Q psy355          226 STE  228 (285)
Q Consensus       226 ~~~  228 (285)
                      .|+
T Consensus       390 Fp~  392 (948)
T KOG1058|consen  390 FPE  392 (948)
T ss_pred             ChH
Confidence            664

>KOG1824|consensus

Probab=94.37  E-value=0.78  Score=47.03  Aligned_cols=154  Identities=10%  Similarity=0.100  Sum_probs=99.0

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+..++++|...+++|+-.|.+++|-++.--++.|-.-    .+..|..-+-+ ..+..|--+.-+|-..+.+-+|....
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~  122 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSS  122 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCcccc
Confidence            57788999999999999999999999996544333211    23333322222 22344444444444445555655556


Q ss_pred             HHhcCcHHHHHHhhcc------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                      |.....++.+..-|..      +.+.++-.++-.+....+......-. ...+....+..-|.++   -.-+|.++..+|
T Consensus       123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~---R~aVrKkai~~l  198 (1233)
T KOG1824|consen  123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSP---RLAVRKKAITAL  198 (1233)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccCh---HHHHHHHHHHHH
Confidence            6666666555555443      34558888888888777653222222 2245666677777777   788999999999


Q ss_pred             HHHHhcChH
Q psy355          220 ASLIKDSTE  228 (285)
Q Consensus       220 ~~l~~~~~~  228 (285)
                      +.++..++.
T Consensus       199 ~~la~~~~~  207 (1233)
T KOG1824|consen  199 GHLASSCNR  207 (1233)
T ss_pred             HHHHHhcCH
Confidence            999988763

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.34  E-value=0.94  Score=46.29  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             HHHHHHcCCHHHHHhhhcC-----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc---cCCC----HHHH
Q psy355           58 ANDFLKMGGLPVLQPLLEG-----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE---HDSN----TTVQ  125 (285)
Q Consensus        58 a~~~~~~Gg~~~Lv~lL~s-----~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~---~~~~----~~v~  125 (285)
                      +..+.+.||+..++.+|.+     ....+....+.++..++. -+.+++++++.|+++.|+..|.   ....    ..+-
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            5567789999999999886     234677778888888885 5889999999999999998775   2222    4565


Q ss_pred             HHHHHHHHHHhhC----ChHhHHHHHhcCc--------HHHHHHhhccC----cHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355          126 VKSLYAVSCLVRD----NEECLKEFIKRDG--------FSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLL  189 (285)
Q Consensus       126 ~~a~~ALs~l~r~----~~~~~~~f~~~~g--------i~~L~~~L~~~----~~~v~~ka~~~l~~L~~~~~~~~~~l~  189 (285)
                      .+.+..+-.++..    .......+....|        +..+++.+.++    +.++..-.+.+|-+|+-++++..+.++
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv  268 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV  268 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence            6666555555432    1112222333444        67777777764    688999999999999999887777666


Q ss_pred             H
Q psy355          190 S  190 (285)
Q Consensus       190 ~  190 (285)
                      +
T Consensus       269 ~  269 (802)
T PF13764_consen  269 E  269 (802)
T ss_pred             H
Confidence            4

>KOG1243|consensus

Probab=94.33  E-value=1  Score=44.59  Aligned_cols=210  Identities=12%  Similarity=0.152  Sum_probs=119.3

Q ss_pred             HHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhccC-CCH--HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC
Q psy355            3 EANRGFLLDALNSMM-VNVGAELEKIIKTLKENQ-DQK--DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD   78 (285)
Q Consensus         3 ~e~~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~-~~~--~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~   78 (285)
                      +|+++|.++-.+.+. ..+.-..++.+.+|-... ..+  ...+..+-.+.-..   |-+.  ...+.+|.|++++.+++
T Consensus       269 ~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~l---d~~e--yq~~i~p~l~kLF~~~D  343 (690)
T KOG1243|consen  269 EEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDL---DEEE--YQVRIIPVLLKLFKSPD  343 (690)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhc---cccc--cccchhhhHHHHhcCcc
Confidence            577777777666554 222222333444443322 211  22333333333333   3222  55678899999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC-hH-----hHHHHHh----
Q psy355           79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN-EE-----CLKEFIK----  148 (285)
Q Consensus        79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~-~~-----~~~~f~~----  148 (285)
                      ..||..=+.=|-.   .-+..++.+++.-++|.+..-+.. +++.+|..++-++..++--- ..     -.+.|..    
T Consensus       344 r~iR~~LL~~i~~---~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d  419 (690)
T KOG1243|consen  344 RQIRLLLLQYIEK---YIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPD  419 (690)
T ss_pred             hHHHHHHHHhHHH---HhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcc
Confidence            9999765554444   445566778888999999988884 78999999999998876310 00     0111111    


Q ss_pred             -cCcH-------------------------HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355          149 -RDGF-------------------------SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID  202 (285)
Q Consensus       149 -~~gi-------------------------~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~  202 (285)
                       .||+                         ....+.++++-..-|..+.+.+.....-   .-..=+...+++.++-+.-
T Consensus       420 ~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~---~~~~~va~kIlp~l~pl~v  496 (690)
T KOG1243|consen  420 EHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY---FDQSEVANKILPSLVPLTV  496 (690)
T ss_pred             ccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc---cchhhhhhhcccccccccc
Confidence             1111                         2223344444455555555555543221   1112233457777777777


Q ss_pred             cCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          203 IEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       203 ~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      .+   +..+|..+..++...+...+
T Consensus       497 d~---e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  497 DP---EKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             Cc---ccchhhHHHHHHHHHHhhhh
Confidence            76   77777777777666555443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.20  E-value=0.61  Score=37.96  Aligned_cols=105  Identities=18%  Similarity=0.225  Sum_probs=79.2

Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355           70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFI  147 (285)
Q Consensus        70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~  147 (285)
                      +-.++..++.+-...+..+++.+-+.-|.....++ ..|.++.++.+.. ...+..++..++-+|+.-|-+ . ....++
T Consensus        48 i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~-~~r~~I  125 (157)
T PF11701_consen   48 IESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-K-SCRTFI  125 (157)
T ss_dssp             HHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-H-HHHHCC
T ss_pred             HHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-H-HHHHHH
Confidence            33455555566788899999999999998766654 6799999999998 336788999999999986653 3 455788


Q ss_pred             hcCcHHHHHHhhc-cCcHH-HHHHHHHHHHH
Q psy355          148 KRDGFSVLLRCIQ-SKKEK-LVIKSCFLIAC  176 (285)
Q Consensus       148 ~~~gi~~L~~~L~-~~~~~-v~~ka~~~l~~  176 (285)
                      ..+|++.|.++++ +++.. +|..|+-.|..
T Consensus       126 ~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen  126 SKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            8899999999996 45566 78877766543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.20  E-value=3.4  Score=38.66  Aligned_cols=184  Identities=14%  Similarity=0.177  Sum_probs=119.3

Q ss_pred             HHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCC----------------------------------HHHHHHHHHH
Q psy355           44 ALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSD----------------------------------PELRWRAAET   88 (285)
Q Consensus        44 al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~----------------------------------~~vr~~A~~~   88 (285)
                      |+..|.-+++.. +-...|...||+..++..|+.+-                                  ..+...-++.
T Consensus         4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~   83 (379)
T PF06025_consen    4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF   83 (379)
T ss_pred             HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence            455555555544 33456888888888877665211                                  1223344456


Q ss_pred             HHHHhh---CCHHHHHHHHhcCc-HHHHHHhhccCC--CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-c
Q psy355           89 VADIVQ---NNPFSQNFIIQTDF-LNLLLTSIEHDS--NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-S  161 (285)
Q Consensus        89 lg~~a~---nn~~~q~~v~~~g~-l~~L~~LL~~~~--~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-~  161 (285)
                      |..+.+   ++...-..+++.+. +..|-..+++..  ...+-..|+..++.++.+-|.....+.++|.++.+++.+. .
T Consensus        84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~  163 (379)
T PF06025_consen   84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK  163 (379)
T ss_pred             HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence            666666   33333334555344 444555566522  3578889999999999999999988888999999999888 4


Q ss_pred             ---CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC----CCCccHHHHHHHHHHHHHhcChH
Q psy355          162 ---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED----ALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       162 ---~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~----~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                         ++.++-.-.-.+++.||-++ .-.+.+.+.+.++.+...+.+++    -...+.-...-.++-.|+++.|.
T Consensus       164 ~i~~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~  236 (379)
T PF06025_consen  164 GILPSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS  236 (379)
T ss_pred             CCCCcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence               36777777778888888764 56778888899999999888761    00112233334445556666654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1240|consensus

Probab=93.92  E-value=1.7  Score=45.83  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLL  113 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l~~L~  113 (285)
                      .+-|..||+-|..+...++--..+-  -.+|.++-|+..+.+.||..|+.+|..+..+    ++.....+.++ .+|.|-
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~  513 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN  513 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence            4678888888888876665333222  3589999999999999999999999887654    22222233333 788888


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhh
Q psy355          114 TSIEHDSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus       114 ~LL~~~~~~~v~~~a~~ALs~l~r  137 (285)
                      .|+.......+|..-+..|+-++.
T Consensus       514 ~l~~d~~~~~vRiayAsnla~LA~  537 (1431)
T KOG1240|consen  514 HLLNDSSAQIVRIAYASNLAQLAK  537 (1431)
T ss_pred             hhhccCccceehhhHHhhHHHHHH
Confidence            888753444566665666666654

>KOG1832|consensus

Probab=93.89  E-value=0.21  Score=50.58  Aligned_cols=147  Identities=21%  Similarity=0.298  Sum_probs=103.5

Q ss_pred             chHHHHHHcCCHHHHHhhhc--------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------CcHHHHHHhhcc-
Q psy355           56 DYANDFLKMGGLPVLQPLLE--------GSDPELRWRAAETVADIVQNNPFSQNFIIQT--------DFLNLLLTSIEH-  118 (285)
Q Consensus        56 dna~~~~~~Gg~~~Lv~lL~--------s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--------g~l~~L~~LL~~-  118 (285)
                      ..|++|.++||+..++.+..        ++..++...|+.+|. +.+--|..|..+...        .++..++.--.- 
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~-i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~  670 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLH-IVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGS  670 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhhee-eeEecchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence            45889999999999999765        445688888998888 555678888877643        244444332221 


Q ss_pred             --CCCHHHHHHHHHHHHHHhhCChHh-----------------------------------HHHHHhcCcHHHHHHhhcc
Q psy355          119 --DSNTTVQVKSLYAVSCLVRDNEEC-----------------------------------LKEFIKRDGFSVLLRCIQS  161 (285)
Q Consensus       119 --~~~~~v~~~a~~ALs~l~r~~~~~-----------------------------------~~~f~~~~gi~~L~~~L~~  161 (285)
                        ..+++++..|+..|-|++.+.|..                                   ...+...+||..|+.+|+.
T Consensus       671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~  750 (1516)
T KOG1832|consen  671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQY  750 (1516)
T ss_pred             ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Confidence              137889999999888876653222                                   3345567899999999985


Q ss_pred             C-----cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH--HHHHHhcccC
Q psy355          162 K-----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV--EQMCVLIDIE  204 (285)
Q Consensus       162 ~-----~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v--~~L~~lL~~~  204 (285)
                      .     ...+|.-||.+|.-|++. +.+++.+.+.-++  ..+-.++..+
T Consensus       751 k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltKLpLvt~~~~q~lm~eP  799 (1516)
T KOG1832|consen  751 KNPPTTADCIRALACRVLLGLARD-DTVRQILTKLPLVTNERAQILMAEP  799 (1516)
T ss_pred             cCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHhCccccchHHHHHhhCc
Confidence            3     367888899999888765 5688877776665  3455555554

>KOG4151|consensus

Probab=93.89  E-value=0.76  Score=46.06  Aligned_cols=178  Identities=15%  Similarity=0.199  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC
Q psy355           41 CIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD  119 (285)
Q Consensus        41 ~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~  119 (285)
                      ..++|.++..|...-+. ...+++--+++-+-.++..+++.+|..|+..+.|+.-..-..-..+++..-=.++|.+....
T Consensus       559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~  638 (748)
T KOG4151|consen  559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV  638 (748)
T ss_pred             HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence            33444444444332221 22477766677777778889999999999999999987666666667744333455544433


Q ss_pred             CCHHHHHHHHHHHHHH---hhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          120 SNTTVQVKSLYAVSCL---VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       120 ~~~~v~~~a~~ALs~l---~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      .++.....++.++..|   ..++-+....  ...|...++.++.+.+..+|......+.++..........+......+.
T Consensus       639 ~~E~~~lA~a~a~a~I~sv~~n~c~~~~~--~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~  716 (748)
T KOG4151|consen  639 ADEKFELAGAGALAAITSVVENHCSRILE--LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL  716 (748)
T ss_pred             hhhHHhhhccccccchhhcchhhhhhHHH--hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence            4445555555555433   3333332222  3478999999999999999999999999977766667777776666665


Q ss_pred             HHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          197 MCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       197 L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +..+=...   ....++.+..+|..+.
T Consensus       717 l~~~~~~~---~a~~~~~~~~~l~~a~  740 (748)
T KOG4151|consen  717 LSGLQKLN---RAPKREDAAPCLSAAE  740 (748)
T ss_pred             HHHHHHhh---hhhhhhhhhhHHHHHH
Confidence            55443333   4556666666665543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=93.87  E-value=7.1  Score=38.34  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      +..|-.+|+++....|..|.++|..+++-.|
T Consensus       305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P  335 (898)
T COG5240         305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYP  335 (898)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence            5666678999999999999999999998755

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.84  E-value=3  Score=37.93  Aligned_cols=153  Identities=20%  Similarity=0.254  Sum_probs=97.5

Q ss_pred             HHHHhhhcC-CCHHHHHHHHHHHHHHhhCCH--HHHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhC----
Q psy355           68 PVLQPLLEG-SDPELRWRAAETVADIVQNNP--FSQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRD----  138 (285)
Q Consensus        68 ~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~--~~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~----  138 (285)
                      .-|+++.++ ....|-.-++.++.|++.-.|  .+.+.....++.|. ++.|..  -+++.++...-.-=|.+..+    
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~-vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKC-VQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHH-HHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            344555554 345666778888888886442  22333333334443 444432  13444443322222222211    


Q ss_pred             --------------------------ChHhHHHHHhcC--cHHHHHHhhccCcHH-HHHHHHHHHHHHhcCCchHHHHHH
Q psy355          139 --------------------------NEECLKEFIKRD--GFSVLLRCIQSKKEK-LVIKSCFLIACLCTDNNQVKQVLL  189 (285)
Q Consensus       139 --------------------------~~~~~~~f~~~~--gi~~L~~~L~~~~~~-v~~ka~~~l~~L~~~~~~~~~~l~  189 (285)
                                                ...+.+.|.+.+  .+..|.+.+++..+. .-.-||.=|..+++..|+.+..+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                                      112345555433  567888888886543 445678888888899999999999


Q ss_pred             HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          190 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       190 ~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      +-|+=..+++++.++   |++++=.|+.|+..+..
T Consensus       397 Kyg~k~~im~L~nh~---d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHD---DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCC---CchhhHHHHHHHHHHHh
Confidence            999999999999999   99999999999987764

>KOG1943|consensus

Probab=93.79  E-value=0.82  Score=47.34  Aligned_cols=151  Identities=11%  Similarity=0.129  Sum_probs=97.1

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+..|+.-|++.+..|||.||+-+|.+++.-|.    .+..-++...+.++....+...=--||.||+-+++-.----..
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            456677777889999999999999999998883    2223466777777765443455558999999987643221222


Q ss_pred             HHhcCcHHHHHHhhccC--------cHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSK--------KEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL  216 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~--------~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al  216 (285)
                      +.  ..+|+++..|.-+        ...+|-.||+++..+.+.. |...+-++..=+-.-|+.-+=.+   +...|..|.
T Consensus       418 l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr---evncRRAAs  492 (1133)
T KOG1943|consen  418 LE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR---EVNCRRAAS  492 (1133)
T ss_pred             HH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc---hhhHhHHHH
Confidence            22  3467777766532        4579999999999998873 33232222211112233334444   677888888


Q ss_pred             HHHHHHHhc
Q psy355          217 SALASLIKD  225 (285)
Q Consensus       217 ~aL~~l~~~  225 (285)
                      .|+...+..
T Consensus       493 AAlqE~VGR  501 (1133)
T KOG1943|consen  493 AALQENVGR  501 (1133)
T ss_pred             HHHHHHhcc
Confidence            887766644

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.77  E-value=3  Score=34.92  Aligned_cols=69  Identities=19%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      ++.++++..+++..+|..|+.+|+.+.+.   ||.        -++|.|+-|..+ +++.+|..|...+..+...++.-.
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHH
Confidence            46777888899999999999999988763   553        278999998885 789999999999999987776644


Q ss_pred             H
Q psy355          144 K  144 (285)
Q Consensus       144 ~  144 (285)
                      .
T Consensus        81 ~   81 (187)
T PF12830_consen   81 E   81 (187)
T ss_pred             H
Confidence            3

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=93.70  E-value=7.4  Score=38.24  Aligned_cols=72  Identities=15%  Similarity=0.230  Sum_probs=54.1

Q ss_pred             HHHHhhccCcHHHHHHHHHHHHHHhcCC--chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          154 VLLRCIQSKKEKLVIKSCFLIACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       154 ~L~~~L~~~~~~v~~ka~~~l~~L~~~~--~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      .|-.-|++.-.-++-+++.+++.+...+  ++..+     ..|..|-.+|+++   ....|=.|++.|..|+...|+.+.
T Consensus       268 fL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~---rv~~rFsA~Riln~lam~~P~kv~  339 (898)
T COG5240         268 FLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKST---RVVLRFSAMRILNQLAMKYPQKVS  339 (898)
T ss_pred             HHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHhhCCceee
Confidence            3333444555778888999988887654  33322     3556777888888   888999999999999999999887


Q ss_pred             hc
Q psy355          232 LC  233 (285)
Q Consensus       232 ~~  233 (285)
                      .|
T Consensus       340 vc  341 (898)
T COG5240         340 VC  341 (898)
T ss_pred             ec
Confidence            77

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.68  E-value=2.4  Score=41.48  Aligned_cols=133  Identities=13%  Similarity=0.134  Sum_probs=80.7

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      -+.-..+|.....+...|.-|-+-+..+... .+.++.     ++..++.|...++..||..|.+.|..+|.+|+..-..
T Consensus        22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k   96 (556)
T PF05918_consen   22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK   96 (556)
T ss_dssp             HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence            3334444444444566777777777776655 344443     5788899999999999999999999999998764433


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh-h--ccCcHHHHHHHHHHHH
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC-I--QSKKEKLVIKSCFLIA  175 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~-L--~~~~~~v~~ka~~~l~  175 (285)
                           +...|++||.++ ++.....+-.+|..+.+..|...-        ..+... +  .+++..+|.++.-+|+
T Consensus        97 -----vaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k~tL--------~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   97 -----VADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPKGTL--------TGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             -----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcHHHH--------HHHHHHHHhcccCchHHHHHHHHHHH
Confidence                 467899999974 556666666888888776665421        112222 2  2456778888775554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2274|consensus

Probab=93.66  E-value=9.7  Score=39.17  Aligned_cols=148  Identities=12%  Similarity=0.178  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhh-hc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           39 DICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPL-LE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~l-L~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +...-.++.|...| ..|.+... .+...+|.++.+ ++ +++|-|...+-.++-.+.|+ ..|+.- +..-.+|.|++.
T Consensus       545 evl~llmE~Ls~vv-~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~-m~e~~iPslisi  621 (1005)
T KOG2274|consen  545 EVLVLLMEALSSVV-KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGP-MQERLIPSLISV  621 (1005)
T ss_pred             HHHHHHHHHHHHHh-ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcc-hHHHHHHHHHHH
Confidence            33333344444443 44544433 344556777764 33 68888888888888888873 333332 223489999999


Q ss_pred             hccCC---CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh-hccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355          116 IEHDS---NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL  189 (285)
Q Consensus       116 L~~~~---~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~-L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~  189 (285)
                      +....   ......-|+--|..++|+.|+-...-+-.-.+|++.++ |.++|..+-+.+.-+++.+.+.+++......
T Consensus       622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~  699 (1005)
T KOG2274|consen  622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWH  699 (1005)
T ss_pred             HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence            98632   25678889999999999987754444434567888887 5567888889999999999887655444333

>KOG2973|consensus

Probab=93.64  E-value=0.37  Score=43.36  Aligned_cols=107  Identities=11%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh--cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH
Q psy355          110 NLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV  187 (285)
Q Consensus       110 ~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~--~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~  187 (285)
                      --++.++.+ .++.||+.|+.-+.+++.+   ..+.+..  .--++.+.+++...++  -+.|++++.|+.. ++..+..
T Consensus         6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    6 VELVELLHS-LSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHHhcc-CChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHH
Confidence            346778875 6789999999999988776   2333432  2355667777776655  6788999999855 4567778


Q ss_pred             HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       188 l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +++. ++..++..+..+   ....-......|.|+++...
T Consensus        79 ll~~-~~k~l~~~~~~p---~~~lad~~cmlL~NLs~~~~  114 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDP---QSPLADLICMLLSNLSRDDD  114 (353)
T ss_pred             HHHH-HHHHHHHHhcCc---ccchHHHHHHHHHHhccCch
Confidence            8877 778888888777   66777777777777776653

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.64  E-value=0.35  Score=35.72  Aligned_cols=72  Identities=14%  Similarity=0.266  Sum_probs=57.6

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      +...+..|++|.+.||.+|+..|..+...+.  ....--.+++..++..|++ +++-|--.|+-+++.++.-+|.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence            4566778899999999999999999998776  1112224678888888886 6778889999999999987776

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.64  E-value=0.67  Score=37.87  Aligned_cols=142  Identities=15%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             HHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           67 LPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        67 ~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      ++.|+++|++ .+..+|..|.++||.+-.=+|...+.+...  .+   .--..+.........     -...+..+..+.
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~-----l~~~~~~~~~ee   81 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDIS-----LPMMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhH-----HhhccCCCchHH
Confidence            4566677776 469999999999999988888755433221  11   000000111111111     122233334455


Q ss_pred             HHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +.-...+..|++.|++++ ..-+..+..++.++... +.....++-  -++|.++..+.+.   +...+|..+.-|..|.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~---~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTC---PDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence            666667888888888764 44444556666665533 223334443  3778888888876   6688888777776665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=93.54  E-value=1.7  Score=38.59  Aligned_cols=146  Identities=16%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             HHHcCCHHHHHhhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355           61 FLKMGGLPVLQPLLEGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus        61 ~~~~Gg~~~Lv~lL~s~~----~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~  136 (285)
                      +.-.+.+|.++.-+.++.    ......+|..|+.+|.++.        .+.+..+...+....-.......--+++.+.
T Consensus       107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~  178 (262)
T PF14225_consen  107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR  178 (262)
T ss_pred             HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            444555666666666665    2445577788888884322        2344555555543222222222333334444


Q ss_pred             hCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355          137 RDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL  216 (285)
Q Consensus       137 r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al  216 (285)
                      .++-+..    +...+..|+++|.++..-+|.++..+|..+...-+-.+.  ...+++.++.++|.++      +-..|+
T Consensus       179 ~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~------~~~eAL  246 (262)
T PF14225_consen  179 EAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD------LWMEAL  246 (262)
T ss_pred             HHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc------cHHHHH
Confidence            3332211    123456789999999999999999999999876322222  4456899999999876      566788


Q ss_pred             HHHHHHHhcC
Q psy355          217 SALASLIKDS  226 (285)
Q Consensus       217 ~aL~~l~~~~  226 (285)
                      ..|..+...+
T Consensus       247 ~VLd~~v~~s  256 (262)
T PF14225_consen  247 EVLDEIVTRS  256 (262)
T ss_pred             HHHHHHHhhc
Confidence            8887777655

>KOG2956|consensus

Probab=93.44  E-value=7.4  Score=37.14  Aligned_cols=192  Identities=13%  Similarity=0.097  Sum_probs=114.2

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhC
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQN   95 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~n   95 (285)
                      .+..+.++..+.-+++.+ ..+++..|+.+|-.+.. +----+.=+..-.+..++..|.. .+..++.-|+++|+.++++
T Consensus       282 ~~~~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~  360 (516)
T KOG2956|consen  282 VDQSALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN  360 (516)
T ss_pred             cchhHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh
Confidence            344555666665555552 34778888887777653 32222221111124455666654 8899999999999999998


Q ss_pred             CHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHH
Q psy355           96 NPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL  173 (285)
Q Consensus        96 n~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~  173 (285)
                      .|.   .+.+.  =++..++.--.. +.+.+-..|.-+.+.++..+.+-+. +      ..+..++.+.|...-.-+.-+
T Consensus       361 Q~~---~l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~-I------~~i~~~Ilt~D~~~~~~~iKm  429 (516)
T KOG2956|consen  361 QPA---RLFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC-I------VNISPLILTADEPRAVAVIKM  429 (516)
T ss_pred             chH---hhhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH-H------HHHhhHHhcCcchHHHHHHHH
Confidence            664   22221  244444444443 4556666677776666655544332 2      233444444555544445555


Q ss_pred             HHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          174 IACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       174 l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      +..++..- .+-.-.++ ..+.|.+++--.+.   ...+|..|..+|.++...
T Consensus       430 ~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~---SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  430 LTKLFERLSAEELLNLL-PDIAPCVIQAYDST---SSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             HHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCc---hHHhhhhHHHhHHHHHHH
Confidence            66666542 12222222 36788888888888   999999999999998743

>KOG2933|consensus

Probab=93.44  E-value=0.9  Score=40.90  Aligned_cols=144  Identities=16%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc--hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID--YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN   95 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d--na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n   95 (285)
                      .++-..+++++..|...++  +.++++|.-+..|.+-.-  ....++  -.+..+++-++++...|-..|+.+++.+.++
T Consensus        84 d~p~~al~~~l~~L~s~dW--~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNlRS~VsraA~~t~~difs~  159 (334)
T KOG2933|consen   84 DDPEAALKQALKKLSSDDW--EDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNLRSAVSRAACMTLADIFSS  159 (334)
T ss_pred             CcHHHHHHHHHHHhchHHH--HHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            4556667777777766554  667777777776654321  111222  2466777888999999999999999999985


Q ss_pred             -CHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHH
Q psy355           96 -NPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC  171 (285)
Q Consensus        96 -n~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~  171 (285)
                       |..+.+      .+..++..|.+   .++--|+..|--||-.++.+-.++.       .++.|+.++++..++++.+++
T Consensus       160 ln~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~  226 (334)
T KOG2933|consen  160 LNNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAA  226 (334)
T ss_pred             HHHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhh
Confidence             333343      34444444432   2345789999999999998765542       356677778889999999998


Q ss_pred             HHHHHHh
Q psy355          172 FLIACLC  178 (285)
Q Consensus       172 ~~l~~L~  178 (285)
                      ....+..
T Consensus       227 ~~~~~~v  233 (334)
T KOG2933|consen  227 LCFSRCV  233 (334)
T ss_pred             ccccccc
Confidence            7766554

>KOG2062|consensus

Probab=93.16  E-value=1.1  Score=44.71  Aligned_cols=136  Identities=18%  Similarity=0.204  Sum_probs=94.5

Q ss_pred             HcCCHHHHHh-hhcCCCHHHHHHHHHHHHHH--hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355           63 KMGGLPVLQP-LLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus        63 ~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~--a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      ..+...++++ ++...+|-+|......++-.  .++|         .+++..|+..-=++.+..||+.|+-||+-++...
T Consensus       516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d  586 (929)
T KOG2062|consen  516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD  586 (929)
T ss_pred             hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecC
Confidence            3446666766 78889999998888777643  3333         3567778877555788899999999999988777


Q ss_pred             hHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355          140 EECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  218 (285)
Q Consensus       140 ~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~a  218 (285)
                      |.+.-         ..+.+|+. .++-||--|+.++.-.|.+.- .+.      ++..|-.+...+   ..-+|.-|+-+
T Consensus       587 p~~~~---------s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e------Ai~lLepl~~D~---~~fVRQgAlIa  647 (929)
T KOG2062|consen  587 PEQLP---------STVSLLSESYNPHVRYGAAMALGIACAGTG-LKE------AINLLEPLTSDP---VDFVRQGALIA  647 (929)
T ss_pred             hhhch---------HHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH------HHHHHhhhhcCh---HHHHHHHHHHH
Confidence            76543         33566664 489999999999998887632 111      222233333444   55688888888


Q ss_pred             HHHHHhcC
Q psy355          219 LASLIKDS  226 (285)
Q Consensus       219 L~~l~~~~  226 (285)
                      +..|+-.+
T Consensus       648 ~amIm~Q~  655 (929)
T KOG2062|consen  648 LAMIMIQQ  655 (929)
T ss_pred             HHHHHHhc
Confidence            88887555

>KOG4535|consensus

Probab=93.13  E-value=0.33  Score=46.24  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh----CChH---hHHH
Q psy355           73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR----DNEE---CLKE  145 (285)
Q Consensus        73 lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r----~~~~---~~~~  145 (285)
                      |=.|.+.-++..|.++++-.+=+...-++...-..+...++..|.+ +.-..|.|+.|++|||+.    +.|.   +...
T Consensus       399 C~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR  477 (728)
T KOG4535|consen  399 CNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQER  477 (728)
T ss_pred             ccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH
Confidence            4456667788999999987775443334443444566666666663 457899999999999864    3343   3444


Q ss_pred             HHhcCcHHHHHHh-hc-c-CcHHHHHHHHHHHHHHhc
Q psy355          146 FIKRDGFSVLLRC-IQ-S-KKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       146 f~~~~gi~~L~~~-L~-~-~~~~v~~ka~~~l~~L~~  179 (285)
                      |+.. -+..+++. .. + +..||+.+|..++.++..
T Consensus       478 ~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ  513 (728)
T KOG4535|consen  478 FSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ  513 (728)
T ss_pred             HHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence            4411 11222222 11 2 368999999999999864

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.98  E-value=6.9  Score=35.53  Aligned_cols=137  Identities=15%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhhcCc---chHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHh---hCCHHHHHHHHhcCcHH
Q psy355           39 DICIGALDNLSDYVCSI---DYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIV---QNNPFSQNFIIQTDFLN  110 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~---dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a---~nn~~~q~~v~~~g~l~  110 (285)
                      ++..-|+..+.-++=++   +.+..+.+ ...|+|.+.+..  ..+.+|..++.+||-++   .+.+......++  .+.
T Consensus       101 ~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le  177 (309)
T PF05004_consen  101 EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLE  177 (309)
T ss_pred             HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHH
Confidence            45555666666554442   45666655 346778787764  45677788887887653   344433332212  333


Q ss_pred             HHHHh--hcc---------CCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355          111 LLLTS--IEH---------DSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       111 ~L~~L--L~~---------~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      .++..  ++.         .+++.+...|+.+-+-++..-|.. ..... ...++.|..+|.+++..||..|.-+|.-|.
T Consensus       178 ~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  178 SIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            33322  222         123578888988888887665552 22332 346899999999999999999988887654


Q ss_pred             c
Q psy355          179 T  179 (285)
Q Consensus       179 ~  179 (285)
                      .
T Consensus       257 E  257 (309)
T PF05004_consen  257 E  257 (309)
T ss_pred             H
Confidence            3

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1060|consensus

Probab=92.84  E-value=5  Score=40.66  Aligned_cols=138  Identities=16%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      ++-+..+.++.+.++...|..+||.||+++-.....     ++.-|+.|+++ .+..|...|+..|-.++..+|..-..+
T Consensus       394 LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~t-----CL~gLv~Llss-hde~Vv~eaV~vIk~Llq~~p~~h~~i  467 (968)
T KOG1060|consen  394 LRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDT-----CLNGLVQLLSS-HDELVVAEAVVVIKRLLQKDPAEHLEI  467 (968)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhH-----HHHHHHHHHhc-ccchhHHHHHHHHHHHHhhChHHHHHH
Confidence            445556777888899999999999999988776655     56679999997 578899999999999998777654333


Q ss_pred             HhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          147 IKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                           +..|.+++.+- -+..|.-..|+++..|..-|...     -.++..+++-..+.   ...++-.+|..-..+.
T Consensus       468 -----i~~La~lldti~vp~ARA~IiWLige~~e~vpri~-----PDVLR~laksFs~E---~~evKlQILnL~aKLy  532 (968)
T KOG1060|consen  468 -----LFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIA-----PDVLRKLAKSFSDE---GDEVKLQILNLSAKLY  532 (968)
T ss_pred             -----HHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhc-----hHHHHHHHHhhccc---cchhhHHHHHhhhhhe
Confidence                 44566666553 46777777899887776533211     12333444444444   5555555554444443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=0.64  Score=45.20  Aligned_cols=105  Identities=10%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             HHHHcCC---HHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355           60 DFLKMGG---LPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL  135 (285)
Q Consensus        60 ~~~~~Gg---~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l  135 (285)
                      .++..|-   +..|+.+ .+..+.+||..|.-+||-+|-..         ...++..+++|..+.+..||.-.+.||+-.
T Consensus       543 Ay~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGia  613 (926)
T COG5116         543 AYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIA  613 (926)
T ss_pred             HHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhh
Confidence            3444443   3334443 34577888888888888777543         346778888888777888998888888877


Q ss_pred             hhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       136 ~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      |.|.-.+.       .+.+|-.++..+..=||+.|+-+++-++..
T Consensus       614 cag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         614 CAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             hcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence            77654322       234556667777888888888888876654

>KOG1240|consensus

Probab=92.73  E-value=11  Score=40.01  Aligned_cols=209  Identities=16%  Similarity=0.190  Sum_probs=134.0

Q ss_pred             CCHHHHHHHHHHHHhccCC-C-HHHHHHHHHHHHHhhcC---c--chHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHH
Q psy355           18 VNVGAELEKIIKTLKENQD-Q-KDICIGALDNLSDYVCS---I--DYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETV   89 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~-~-~~~~~~al~~L~~lv~~---~--dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~l   89 (285)
                      .++-..+.+.++.+-.-.. + .+.+..|+..|.+++..   +  .+|+-|.+- .+|.|-.++.. ....||..-|..|
T Consensus       454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnl  532 (1431)
T KOG1240|consen  454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNL  532 (1431)
T ss_pred             cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhH
Confidence            6777777887776644442 2 37788888888887643   3  345555442 36777777776 6678888888888


Q ss_pred             HHHhhCCHHHHHHHH----------------------------hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC---
Q psy355           90 ADIVQNNPFSQNFII----------------------------QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD---  138 (285)
Q Consensus        90 g~~a~nn~~~q~~v~----------------------------~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~---  138 (285)
                      +-+|..--..+....                            -.++=.....||. ++++.||...+-+|.-+|.-   
T Consensus       533 a~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk  611 (1431)
T KOG1240|consen  533 AQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGK  611 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhh
Confidence            887732111111100                            0112233445666 45678888888888887631   


Q ss_pred             ---Ch---------------HhHHHHH---------------hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355          139 ---NE---------------ECLKEFI---------------KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK  185 (285)
Q Consensus       139 ---~~---------------~~~~~f~---------------~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~  185 (285)
                         |.               .-.-+|+               +...+|+|.+.|.++.+-|..+|..+++.|+..+--.+
T Consensus       612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K  691 (1431)
T KOG1240|consen  612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK  691 (1431)
T ss_pred             cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence               10               0122232               23456788888999999999999999999988754333


Q ss_pred             HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhc
Q psy355          186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC  233 (285)
Q Consensus       186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~  233 (285)
                      ..++  .+++....+|-.|   +.=+|..++..+..+...-..+-..|
T Consensus       692 ~~v~--~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~ls~advyc  734 (1431)
T KOG1240|consen  692 PAVK--DILQDVLPLLCHP---NLWIRRAVLGIIAAIARQLSAADVYC  734 (1431)
T ss_pred             HHHH--HHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhhhhhhheE
Confidence            3333  3666777788888   88899999999888876554433344

>KOG1077|consensus

Probab=92.73  E-value=2.3  Score=42.46  Aligned_cols=151  Identities=14%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      |.---++||+++--.=+.-.-.++.-+...|...-+.+     +..+-+=|.+ .++...--|+..|+|+  |.....++
T Consensus        75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~s-rn~~fv~LAL~~I~ni--G~re~~ea  146 (938)
T KOG1077|consen   75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSS-RNPTFVCLALHCIANI--GSREMAEA  146 (938)
T ss_pred             chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhc-CCcHHHHHHHHHHHhh--ccHhHHHH
Confidence            34455677877544334344444444444443322222     2223333332 4667778889999997  44555666


Q ss_pred             HHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      |.  .-++   ++|-++  ..-+|+||+.++-.|....|+..   --.++..+++.+|...   +-.+...+...+..|+
T Consensus       147 ~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~---~~gv~ta~~sLi~~lv  215 (938)
T KOG1077|consen  147 FA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQ---HMGVVTAATSLIEALV  215 (938)
T ss_pred             hh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCcc---ccceeeehHHHHHHHH
Confidence            65  4444   445554  47899999999999999887543   2347899999999988   8888888999999999


Q ss_pred             hcChHHHhhccc
Q psy355          224 KDSTEAQSLCRL  235 (285)
Q Consensus       224 ~~~~~~~~~~~~  235 (285)
                      +..|+.+..|-.
T Consensus       216 k~~p~~yk~~~~  227 (938)
T KOG1077|consen  216 KKNPESYKTCLP  227 (938)
T ss_pred             HcCCHHHhhhHH
Confidence            999988877743

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.72  E-value=1.1  Score=35.26  Aligned_cols=96  Identities=8%  Similarity=0.077  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      -.....|+.+++..+....     .++..|.+-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus        18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~   92 (133)
T cd03561          18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS   92 (133)
T ss_pred             HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence            4456667777776533322     2456777888899999999999999988877 455777787878998899999752


Q ss_pred             CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 ~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ...+..++.+++..+.......
T Consensus        93 ~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          93 PKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            1237889999999998876544

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1077|consensus

Probab=92.54  E-value=3.4  Score=41.30  Aligned_cols=174  Identities=18%  Similarity=0.242  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhhcCcchH-HH----HHHcCC-HHHHHhhhc----CCCHHHHHHHHHHHHHHh---h---CCHHHHHHHH
Q psy355           41 CIGALDNLSDYVCSIDYA-ND----FLKMGG-LPVLQPLLE----GSDPELRWRAAETVADIV---Q---NNPFSQNFII  104 (285)
Q Consensus        41 ~~~al~~L~~lv~~~dna-~~----~~~~Gg-~~~Lv~lL~----s~~~~vr~~A~~~lg~~a---~---nn~~~q~~v~  104 (285)
                      .-.|+..|.++|-..+.. .+    |+..-= ...++++|+    -.++..|.+-..++-.+.   +   .+..+|+...
T Consensus       226 ~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na  305 (938)
T KOG1077|consen  226 LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNA  305 (938)
T ss_pred             HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhh
Confidence            335566666666443332 11    111110 123455554    256788888877777664   3   1223444444


Q ss_pred             hcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHh------------------HHHHHhcCcHHHHHHhhc-cCcH
Q psy355          105 QTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEEC------------------LKEFIKRDGFSVLLRCIQ-SKKE  164 (285)
Q Consensus       105 ~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~------------------~~~f~~~~gi~~L~~~L~-~~~~  164 (285)
                      ++-++--.+++..+ +++++.-.+|+.+|+.+..+-..+                  ++++-.+  ...++..|+ ..|.
T Consensus       306 ~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv  383 (938)
T KOG1077|consen  306 KNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV  383 (938)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence            44455555555443 455677888888888877664443                  2222222  567788888 4689


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+|++|+-+++.+|....  ..     .+|.-|.+.|.+-   |..+||-...=+.-|+...
T Consensus       384 SirrravDLLY~mcD~~N--ak-----~IV~elLqYL~tA---d~sireeivlKvAILaEKy  435 (938)
T KOG1077|consen  384 SIRRRAVDLLYAMCDVSN--AK-----QIVAELLQYLETA---DYSIREEIVLKVAILAEKY  435 (938)
T ss_pred             HHHHHHHHHHHHHhchhh--HH-----HHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHh
Confidence            999999999999998642  11     2455666777777   7777766544444444433

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=92.48  E-value=2.6  Score=38.10  Aligned_cols=134  Identities=13%  Similarity=0.145  Sum_probs=95.4

Q ss_pred             HHHHHHhcCcHHHHHHhhcc------CC----------------CHHHHHHHHHHHHHHhhCChHhH-------------
Q psy355           99 SQNFIIQTDFLNLLLTSIEH------DS----------------NTTVQVKSLYAVSCLVRDNEECL-------------  143 (285)
Q Consensus        99 ~q~~v~~~g~l~~L~~LL~~------~~----------------~~~v~~~a~~ALs~l~r~~~~~~-------------  143 (285)
                      +|..+.+.|.+|.|-+++++      .+                +..+|..-+..+.+++.++....             
T Consensus         1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~   80 (303)
T PF12463_consen    1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES   80 (303)
T ss_pred             ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence            37788999999999988874      11                12478888888888887442211             


Q ss_pred             ------HHHH--hcCcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCch--HHHHHHHCCcHHHHHHhcccCCCCCccH
Q psy355          144 ------KEFI--KRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQ--VKQVLLSMGMVEQMCVLIDIEDALDTEM  211 (285)
Q Consensus       144 ------~~f~--~~~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~--~~~~l~~~g~v~~L~~lL~~~~~~d~~~  211 (285)
                            ....  +.|-+..+++.+..  .+...|-.-+.++-+++++.+.  .+.++.+.|.++.++.-+-++...+..+
T Consensus        81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v  160 (303)
T PF12463_consen   81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV  160 (303)
T ss_pred             cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence                  0011  23445566666654  3788899999999999998554  5668889999999998777652223468


Q ss_pred             HHHHHHHHHHHHhcChHHHhh
Q psy355          212 NEHLLSALASLIKDSTEAQSL  232 (285)
Q Consensus       212 ~e~al~aL~~l~~~~~~~~~~  232 (285)
                      ....-..|+.+.+.++.....
T Consensus       161 ~Q~~FDLLGELiK~n~~~f~~  181 (303)
T PF12463_consen  161 LQSNFDLLGELIKFNRDAFQR  181 (303)
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            889999999999999876543

Proteins in this family are typically between 399 and 797 amino acids in length.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.38  E-value=1.4  Score=39.71  Aligned_cols=111  Identities=17%  Similarity=0.247  Sum_probs=80.4

Q ss_pred             CcHHHHH-HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchH
Q psy355          107 DFLNLLL-TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV  184 (285)
Q Consensus       107 g~l~~L~-~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~  184 (285)
                      +.+..|+ .-+++ +++.+|..|+-+||-.+--+......     .++.+.+.++.++..++..|+.++..++.. +...
T Consensus        26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4555555 45665 57899999999999766544432222     356788888878999999999999998764 3222


Q ss_pred             HHHHH-------HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          185 KQVLL-------SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       185 ~~~l~-------~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .....       ...+++.+.+.|.+.   +++++..+..++..|+-.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcC
Confidence            22222       246778888889888   8899999999999988665

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.37  E-value=5.3  Score=39.27  Aligned_cols=129  Identities=15%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      .+..+.-+..+-.+--+-| ...+|+. |-+..+++-+.+++..||.+.+.+|+.++.+-... +.++-+|.+..|.+-+
T Consensus        64 ~dRil~fl~~f~~Y~~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~  141 (885)
T COG5218          64 PDRILSFLKRFFEYDMPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERL  141 (885)
T ss_pred             HHHHHHHHHHHHHhcCCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHH
Confidence            3445555555544332223 2356663 66778888889999999999999999888654433 3456677777777655


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHH
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLI  174 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l  174 (285)
                      -. ..+.||..|+.+|+..-.. ....+.++    ...|+.+++.+ +..||+-|..-|
T Consensus       142 ~D-RE~~VR~eAv~~L~~~Qe~-~~neen~~----~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         142 FD-REKAVRREAVKVLCYYQEM-ELNEENRI----VNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             hc-chHHHHHHHHHHHHHHHhc-cCChHHHH----HHHHHHHHhcCcHHHHHHHHHHHe
Confidence            42 4679999999999987432 22222233    23666777764 678888665433

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.28  E-value=2.8  Score=33.56  Aligned_cols=93  Identities=12%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED  205 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~  205 (285)
                      ...-.|+.+++..+.+.     ..++..|.+=|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++... 
T Consensus        23 ~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~-   96 (142)
T cd03569          23 ASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT-   96 (142)
T ss_pred             HHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc-
Confidence            34445666666543322     23456777788889999999999999988887 677888888999999999999742 


Q ss_pred             CCCccHHHHHHHHHHHHHhcC
Q psy355          206 ALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       206 ~~d~~~~e~al~aL~~l~~~~  226 (285)
                       .++.++++++..+..-....
T Consensus        97 -~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          97 -KNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             -CCHHHHHHHHHHHHHHHHHh
Confidence             37899999999998876443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.19  E-value=2.8  Score=41.94  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             CCHHHHHh-hhcC----CCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355           65 GGLPVLQP-LLEG----SDPELRWRAAETVADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        65 Gg~~~Lv~-lL~s----~~~~vr~~A~~~lg~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      |-+.|+|. ...+    .++.++..|--.+..+.- .+..|-+      -+|.|+..+...++|.+|..|+-+++.++--
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e------hlpllIt~mek~p~P~IR~NaVvglgD~~vc  964 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE------HLPLLITSMEKHPIPRIRANAVVGLGDFLVC  964 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhhCCCcceeccceeecccccee
Confidence            44555554 4443    788999988888887543 3444433      6899999999778899999999999987653


Q ss_pred             ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355          139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  218 (285)
Q Consensus       139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~a  218 (285)
                      +    ..+++. --..|.+-|.+.+..||+.+...+.+|.-.+     .+--.|-++.++.+|..+   |..+.+.|-..
T Consensus       965 f----N~~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~de---da~Isdmar~f 1031 (1128)
T COG5098         965 F----NTTADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDE---DAEISDMARHF 1031 (1128)
T ss_pred             h----hhhhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCC---cchHHHHHHHH
Confidence            2    334432 2346677788889999999999999886543     222358889999999999   99999999888


Q ss_pred             HHHHHhcChH
Q psy355          219 LASLIKDSTE  228 (285)
Q Consensus       219 L~~l~~~~~~  228 (285)
                      +..++.....
T Consensus      1032 ft~~a~KdNt 1041 (1128)
T COG5098        1032 FTQIAKKDNT 1041 (1128)
T ss_pred             HHHHHhcccc
Confidence            8888876653

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=92.18  E-value=0.3  Score=37.06  Aligned_cols=46  Identities=15%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWR   84 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~   84 (285)
                      -+.-..+..|..+....+.=..|+++|+++.|+.||.|++.+|...
T Consensus        61 ~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~  106 (108)
T PF08216_consen   61 VDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID  106 (108)
T ss_pred             HHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence            4566778888888888888888999999999999999999987653

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>KOG2611|consensus

Probab=92.12  E-value=11  Score=36.15  Aligned_cols=120  Identities=19%  Similarity=0.200  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHhhcCcc--hHH--HHHHcCCHHHHHhhhcC-------CCHHHHHHHHHHHHHHhhCCHHHH--HHH
Q psy355           37 QKDICIGALDNLSDYVCSID--YAN--DFLKMGGLPVLQPLLEG-------SDPELRWRAAETVADIVQNNPFSQ--NFI  103 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~d--na~--~~~~~Gg~~~Lv~lL~s-------~~~~vr~~A~~~lg~~a~nn~~~q--~~v  103 (285)
                      .|+++..||--...+|.+-|  -++  .+.+.=|++.+-+||.+       |+.-.+.-+..+++..|+. |+..  ..+
T Consensus        24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~  102 (698)
T KOG2611|consen   24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEM  102 (698)
T ss_pred             ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHH
Confidence            36889999998888987644  333  36667789999999875       2345677888888888864 4322  123


Q ss_pred             HhcCcHHHHHHhhccCCCHH------HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355          104 IQTDFLNLLLTSIEHDSNTT------VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ  160 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~------v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~  160 (285)
                      +  ..||.|+..++...++.      +...+-..|- .+.++++..+..+..||++.+-+.-.
T Consensus       103 v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~-~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen  103 V--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLY-LVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             H--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHH-HHhcCCchhHHHHhcCchHHHHHHHh
Confidence            2  46899999988633322      3344444443 34556888999999999999976533

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.06  E-value=4.2  Score=35.20  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----CCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLL  112 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L  112 (285)
                      .....||.-|..++...+...-|.+...--.+.++|.     ++..-+|..++-+||.+++|.. .+-..+....++|.+
T Consensus       115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            4577899999999988888888887763334445554     2456799999999999999765 455556678999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhhCChHh------HHHHHhcC-cHH-HHHHhhccCcHHHHHHHHHHHHHHhcCCchH
Q psy355          113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEEC------LKEFIKRD-GFS-VLLRCIQSKKEKLVIKSCFLIACLCTDNNQV  184 (285)
Q Consensus       113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~------~~~f~~~~-gi~-~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~  184 (285)
                      +++... .++.-+.-|++-+.-+..+...-      .+.|...+ .+. ...++.+.+..++.+.+..+--.|+ .+|+.
T Consensus       195 LrIme~-gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs-d~p~a  272 (315)
T COG5209         195 LRIMEL-GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS-DKPHA  272 (315)
T ss_pred             HHHHHh-hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec-CCHhH
Confidence            999997 44566667777777766543221      22233211 122 2234455567888877766554443 34555


Q ss_pred             HHHH
Q psy355          185 KQVL  188 (285)
Q Consensus       185 ~~~l  188 (285)
                      ++.+
T Consensus       273 R~lL  276 (315)
T COG5209         273 RALL  276 (315)
T ss_pred             HHHH
Confidence            5444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.01  E-value=1.4  Score=43.65  Aligned_cols=180  Identities=16%  Similarity=0.178  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcchH----------HHHHHcCCHHHHHhhh
Q psy355            7 GFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSIDYA----------NDFLKMGGLPVLQPLL   74 (285)
Q Consensus         7 ~~L~~al~~~~~d~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~dna----------~~~~~~Gg~~~Lv~lL   74 (285)
                      +||............+.|+...+.+..+.  .....+..|+-.+..++...-..          ...+....++.|...|
T Consensus       416 ~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l  495 (618)
T PF01347_consen  416 QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQEL  495 (618)
T ss_dssp             HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHH
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHH
Confidence            34433333332344666666666665443  22344555555555554321111          1122223455666655


Q ss_pred             c----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC--CCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           75 E----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        75 ~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~--~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      .    ..+..-+..++++|||+-.  |         ..++.|..++...  .+..+|..|+||+..++..+|.....+  
T Consensus       496 ~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~--  562 (618)
T PF01347_consen  496 KEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI--  562 (618)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH--
T ss_pred             HHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH--
Confidence            5    4667888999999999853  2         3678888888753  367999999999999988777654433  


Q ss_pred             cCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355          149 RDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS  217 (285)
Q Consensus       149 ~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~  217 (285)
                            +..++.+.  +..+|..|..+|-   ..+|..       ..+..++..|..+  .+.++.-.+..
T Consensus       563 ------l~~I~~n~~e~~EvRiaA~~~lm---~~~P~~-------~~l~~i~~~l~~E--~~~QV~sfv~S  615 (618)
T PF01347_consen  563 ------LLPIFMNTTEDPEVRIAAYLILM---RCNPSP-------SVLQRIAQSLWNE--PSNQVASFVYS  615 (618)
T ss_dssp             ------HHHHHH-TTS-HHHHHHHHHHHH---HT---H-------HHHHHHHHHHTT---S-HHHHHHHHH
T ss_pred             ------HHHHhcCCCCChhHHHHHHHHHH---hcCCCH-------HHHHHHHHHHhhC--chHHHHHHHHH
Confidence                  46666653  6788887765544   344433       3566677777654  24444444433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.95  E-value=1.5  Score=42.74  Aligned_cols=133  Identities=12%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      .+-++|.+.++-+|-..+..+|.+-.+..       +.|++..|+..--++.+..||+.|+-||+-+|...+..      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~------  586 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL------  586 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcch------
Confidence            34457788888888888877775433322       24677788877444678899999999999888765543      


Q ss_pred             cCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          149 RDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       149 ~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                         +.-.+++|.. .++-||--.++++.-.|.+.-..       -++..|-.|...+   ..-+|..|.-++..|+..+.
T Consensus       587 ---lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~---~dfVRQ~AmIa~~mIl~Q~n  653 (926)
T COG5116         587 ---LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDT---NDFVRQSAMIAVGMILMQCN  653 (926)
T ss_pred             ---hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCc---HHHHHHHHHHHHHHHHhhcC
Confidence               3344566654 57999999999999888774322       1344555556666   67788999999988886663

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.81  E-value=1.4  Score=35.34  Aligned_cols=74  Identities=11%  Similarity=0.235  Sum_probs=61.7

Q ss_pred             cHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+..|.+=|.++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...  .+..++++++..+.......
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~--~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR--VHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHh
Confidence            345666778889999999999999988876 667888888999999999999883  38899999999998876444

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.44  E-value=3.4  Score=40.71  Aligned_cols=182  Identities=14%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhc----CcchHHHHHHcCCHHHHHhhhc--
Q psy355            4 ANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVC----SIDYANDFLKMGGLPVLQPLLE--   75 (285)
Q Consensus         4 e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~----~~dna~~~~~~Gg~~~Lv~lL~--   75 (285)
                      |.-+.+-.++..+.....+.|+.+.+.+..+...  .-.+..|+-.+..++.    +.+....++...-++.+...|.  
T Consensus       375 ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~  454 (574)
T smart00638      375 EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQA  454 (574)
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence            3344455555555444567777777777766532  2334445555554442    2221112222234455555443  


Q ss_pred             --CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355           76 --GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE--HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus        76 --s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~--~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                        ..+...+..++++|||+..  |.         .++.|...+.  ...+..+|..|+|||..++..+|...+.+     
T Consensus       455 ~~~~~~~~~~~~LkaLGN~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-----  518 (574)
T smart00638      455 VSKGDEEEIQLYLKALGNAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV-----  518 (574)
T ss_pred             HhcCCchheeeHHHhhhccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-----
Confidence              3566677889999998874  33         2344444444  23457899999999999987666654433     


Q ss_pred             HHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355          152 FSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL  216 (285)
Q Consensus       152 i~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al  216 (285)
                         ++.++.+  .+..+|..|..++-   ..+|+.       ..+..++..+..+  .+.++.-.+.
T Consensus       519 ---l~~i~~n~~e~~EvRiaA~~~lm---~t~P~~-------~~l~~ia~~l~~E--~~~QV~sfv~  570 (574)
T smart00638      519 ---LLPIYLNRAEPPEVRMAAVLVLM---ETKPSV-------ALLQRIAELLNKE--PNLQVASFVY  570 (574)
T ss_pred             ---HHHHHcCCCCChHHHHHHHHHHH---hcCCCH-------HHHHHHHHHHhhc--CcHHHHHHhH
Confidence               3566554  36888888876654   334533       3556666766654  2444444433

>KOG1967|consensus

Probab=91.38  E-value=0.93  Score=46.27  Aligned_cols=204  Identities=14%  Similarity=0.166  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----------hhcC-cchHHHHHHcCCHHHHHhh
Q psy355            6 RGFLLDALNSMM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSD----------YVCS-IDYANDFLKMGGLPVLQPL   73 (285)
Q Consensus         6 ~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~----------lv~~-~dna~~~~~~Gg~~~Lv~l   73 (285)
                      .-|+.+|+=.=- +.-.+.-++.++.|++++..+ .-..++.-+..          .++. +=+.+.|. ...+|.|+..
T Consensus       798 l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~-~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~  875 (1030)
T KOG1967|consen  798 LAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGS-PAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSK  875 (1030)
T ss_pred             HHHHHHHHHHcCCcccchHHHHHHHhcCCccccc-hHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHH
Confidence            457777763221 444666677888888876321 11111211111          0110 11122222 2357888887


Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh--cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355           74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus        74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~--~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                      ..+..-.++..-..+|+++..|-|. | .+..  ...+|.|++-|+- +|..+|..++..|.-++.-++.-+..-+ .-.
T Consensus       876 ~~t~~~~~K~~yl~~LshVl~~vP~-~-vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tl  951 (1030)
T KOG1967|consen  876 FETAPGSQKHNYLEALSHVLTNVPK-Q-VLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQTEHL-STL  951 (1030)
T ss_pred             hccCCccchhHHHHHHHHHHhcCCH-H-hhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccchHHH-hHH
Confidence            7777778999999999999999887 3 2332  2578888898985 6789999999999988776555433222 224


Q ss_pred             HHHHHHhhccCc---HHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355          152 FSVLLRCIQSKK---EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA  218 (285)
Q Consensus       152 i~~L~~~L~~~~---~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~a  218 (285)
                      +|.+..+=++++   ..+|.-|.-++..|++--|...-.-....++..|...|..+   .--+|+.|.++
T Consensus       952 vp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~t 1018 (1030)
T KOG1967|consen  952 VPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHH
Confidence            566666544443   68899999999999885554433334445677788888766   55567666654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.36  E-value=3.5  Score=34.50  Aligned_cols=114  Identities=13%  Similarity=0.175  Sum_probs=80.0

Q ss_pred             CHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-------------------cHHHHHHhhccCCCHHHH
Q psy355           66 GLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD-------------------FLNLLLTSIEHDSNTTVQ  125 (285)
Q Consensus        66 g~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g-------------------~l~~L~~LL~~~~~~~v~  125 (285)
                      .-+.|+. ++..+++.+|..|+.+++.+-.+....=...-+.+                   .-..|+..|.++.+..+.
T Consensus        40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l  119 (182)
T PF13251_consen   40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL  119 (182)
T ss_pred             CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            4456666 56789999999999999999987533222222111                   234567777777778888


Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHH----HhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLL----RCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~----~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      ...+-+++.++.+.|-..-   ..|-++.++    ..+.+.|..++..+..++..+.+..+
T Consensus       120 ~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  120 TQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            8999999999998876532   345454444    44556789999999888888876543

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.32  E-value=0.28  Score=44.37  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             hHHHHHHcCCHHHHHhhhc---CCCHHHHHHHHHHHHHHhhCCHHHH------------------------------HHH
Q psy355           57 YANDFLKMGGLPVLQPLLE---GSDPELRWRAAETVADIVQNNPFSQ------------------------------NFI  103 (285)
Q Consensus        57 na~~~~~~Gg~~~Lv~lL~---s~~~~vr~~A~~~lg~~a~nn~~~q------------------------------~~v  103 (285)
                      ....+.-.|-+.+-++.|.   -.+.+++..--++=..+.++.....                              +.+
T Consensus       271 ~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l  350 (432)
T COG5231         271 YIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDML  350 (432)
T ss_pred             hhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHH
Confidence            3334444555555555443   2566777666666666665533211                              111


Q ss_pred             Hh--cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          104 IQ--TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       104 ~~--~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      .+  ...+..|.++++...+-..-.-||.-|..++|..|.....+.+.||-+.++.++.+++++++-+|..++..+.+
T Consensus       351 ~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         351 IKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            11  13677888888863332355568999999999999998888889999999999999999999999988876543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.25  E-value=13  Score=36.78  Aligned_cols=139  Identities=10%  Similarity=0.095  Sum_probs=87.3

Q ss_pred             CHHHHHhhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355           66 GLPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        66 g~~~Lv~lL~s~~--~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      .+..++.+=+.+.  ..|...-+..+....++.|+--+.|  .|.+..+++-+.+ +++.||..++.-|+-+... ..-+
T Consensus        50 ~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~-v~eI  125 (885)
T COG5218          50 VVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELV--AGTFYHLLRGTES-KDKKVRKRSLQILALLSDV-VREI  125 (885)
T ss_pred             HHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHH--HHHHHHHHhcccC-cchhHHHHHHHHHHHHHHh-cchH
Confidence            3455555544332  2344445555666777888764444  5678888888875 7899999999988877543 3334


Q ss_pred             HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC--CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355          144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS  217 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~  217 (285)
                      ...+-.|.+..|..-+-...+.||..|.++++.+-..  +++.       ..+..|..++..+  .+.++|..|+.
T Consensus       126 De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-------~~~n~l~~~vqnD--PS~EVRr~all  192 (885)
T COG5218         126 DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-------RIVNLLKDIVQND--PSDEVRRLALL  192 (885)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-------HHHHHHHHHHhcC--cHHHHHHHHHH
Confidence            4555455566666666667899999999999987422  3322       2334555666543  14556655443

>KOG2032|consensus

Probab=91.22  E-value=3.5  Score=39.44  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             HHHHcCCHHHHHhhh----cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355           60 DFLKMGGLPVLQPLL----EGSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVS  133 (285)
Q Consensus        60 ~~~~~Gg~~~Lv~lL----~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs  133 (285)
                      .+-+.|.+.-++..|    .+|+..+|..|++.|||.+.+-|.   .+...  -.+..++.-|.++.+..|.-.++.+|.
T Consensus       249 ~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt  325 (533)
T KOG2032|consen  249 ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLT  325 (533)
T ss_pred             cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            344677776555433    258889999999999999998553   23333  245555555554556677777777766


Q ss_pred             HHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       134 ~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      .+.-.-..-.-.++=.+.---+..+..+.++++|..|-+++..|.-
T Consensus       326 ~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  326 MVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK  371 (533)
T ss_pred             HHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence            6543211100011111222345566778899999999998888763

>KOG0413|consensus

Probab=91.09  E-value=1.7  Score=44.86  Aligned_cols=128  Identities=10%  Similarity=0.181  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355           79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC  158 (285)
Q Consensus        79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~  158 (285)
                      +.||..+.-.+|++|=-++....     ..+|.|++-|.......+|...+-|++.+|-++..-.+.     -+|.+...
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~-----YiP~I~~~ 1014 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDR-----YIPMIAAS 1014 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHH-----hhHHHHHH
Confidence            46899999999998865554332     379999999987777899999999999999877654443     46888999


Q ss_pred             hccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC-C--cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          159 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM-G--MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       159 L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~-g--~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      |.+++.-+|+.+.-+|++|.+.+      ++.. |  ++.-+..++..    +++++.-+-..+..+++..
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~----~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDA----NEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHccc----CHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999997642      2222 2  23445555553    6788888777777777554

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.85  E-value=2.1  Score=33.75  Aligned_cols=92  Identities=11%  Similarity=0.212  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED  205 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~  205 (285)
                      ...-.|+.+++..+....     .++..|.+=|+++++.++..|..++-.++.+ ++.+...+.+.+++..|..++....
T Consensus        19 ~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~   93 (133)
T smart00288       19 ELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY   93 (133)
T ss_pred             HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC
Confidence            444556666666543322     2345677778899999999999999999887 6778888889999999999998761


Q ss_pred             CCCcc-HHHHHHHHHHHHHhc
Q psy355          206 ALDTE-MNEHLLSALASLIKD  225 (285)
Q Consensus       206 ~~d~~-~~e~al~aL~~l~~~  225 (285)
                        +.+ ++++++..+..-...
T Consensus        94 --~~~~Vk~kil~li~~W~~~  112 (133)
T smart00288       94 --PLPLVKKRILELIQEWADA  112 (133)
T ss_pred             --CcHHHHHHHHHHHHHHHHH
Confidence              333 899999988776543

Unpublished observations. Domain of unknown function.

>KOG1020|consensus

Probab=90.77  E-value=12  Score=40.58  Aligned_cols=170  Identities=12%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH-HHHHHhhc
Q psy355           82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF-SVLLRCIQ  160 (285)
Q Consensus        82 r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi-~~L~~~L~  160 (285)
                      ...|.++.-.++++.+..|..   -+.+..++..|.. +..++|.+|+-+||.|+.-.|..    ....-+ ..+.+=+-
T Consensus       794 ~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~v----L~~~dvq~~Vh~R~~  865 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSV----LSRPDVQEAVHGRLN  865 (1692)
T ss_pred             chhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHh----hcCHHHHHHHHHhhc
Confidence            455666666677776664432   4678888888885 67899999999999998754431    111111 12223355


Q ss_pred             cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccH
Q psy355          161 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNL  240 (285)
Q Consensus       161 ~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l  240 (285)
                      +....||..|.-+++-.+...|+......     ..+..-+..+   ...+|.+++..+.-+....|...        .+
T Consensus       866 DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt---gvsVRKRvIKIlrdic~e~pdf~--------~i  929 (1692)
T KOG1020|consen  866 DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT---GVSVRKRVIKILRDICEETPDFS--------KI  929 (1692)
T ss_pred             cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC---chhHHHHHHHHHHHHHHhCCChh--------hH
Confidence            66789999999999988777765554333     3344444445   78899999999999988887432        12


Q ss_pred             HHHHHHHHHHccChHhhHHHHHHHHHHH-HHhcCCCCc
Q psy355          241 KFKLNFIKEKHAGNEVYHKELEHVNSVL-TEVFEEDSL  277 (285)
Q Consensus       241 ~~~l~~~~~~l~~~~e~~~~~~~~~~il-~~~f~~~~~  277 (285)
                      .+.+-+.++....  |-..+.+.+..++ +.||+...+
T Consensus       930 ~~~cakmlrRv~D--EEg~I~kLv~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  930 VDMCAKMLRRVND--EEGNIKKLVRETFLKLWFTPVPE  965 (1692)
T ss_pred             HHHHHHHHHHhcc--chhHHHHHHHHHHHHHhccCCCc
Confidence            2333334444432  2222556555544 466766554

>KOG0915|consensus

Probab=90.71  E-value=4.3  Score=43.87  Aligned_cols=154  Identities=15%  Similarity=0.179  Sum_probs=98.2

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      -+|.|.++=-.|++.||..=..+.+.+.+.....-+...+ .++.-|+.-+.+ ..=-||..+|.||+.+.+|.|.-  .
T Consensus       999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~--~ 1074 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS-KEWRVREASCLALADLLQGRPFD--Q 1074 (1702)
T ss_pred             hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChH--H
Confidence            3677888777899999999999999999875554443332 356666665654 44579999999999999997653  3


Q ss_pred             HHhc--CcHHHHHHhhccCcHHHHH---HHHHHHHHHhcC------CchHHHHHHHCCcHHHHHH--hcccCCCCCccHH
Q psy355          146 FIKR--DGFSVLLRCIQSKKEKLVI---KSCFLIACLCTD------NNQVKQVLLSMGMVEQMCV--LIDIEDALDTEMN  212 (285)
Q Consensus       146 f~~~--~gi~~L~~~L~~~~~~v~~---ka~~~l~~L~~~------~~~~~~~l~~~g~v~~L~~--lL~~~~~~d~~~~  212 (285)
                      |.+.  ..+..+.+.+.+-...||.   +++.+++.+|-.      +...++.+  ..++|.|..  .+ +.   -+.+|
T Consensus      1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~---v~evr 1148 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SK---VNEVR 1148 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cc---hHHHH
Confidence            4431  2334445555443445554   566677776632      11112221  123343331  12 33   56889


Q ss_pred             HHHHHHHHHHHhcChHH
Q psy355          213 EHLLSALASLIKDSTEA  229 (285)
Q Consensus       213 e~al~aL~~l~~~~~~~  229 (285)
                      ..++.++.-|++.++..
T Consensus      1149 ~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred             HHHHHHHHHHHHhchhh
Confidence            99999999999888753

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.67  E-value=2.4  Score=33.79  Aligned_cols=94  Identities=12%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC--
Q psy355          128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE--  204 (285)
Q Consensus       128 a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~--  204 (285)
                      ....|+-+++..+...     ..++..|.+-|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...  
T Consensus        21 ~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~   95 (139)
T cd03567          21 AIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYL   95 (139)
T ss_pred             HHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccC
Confidence            4444555555443321     13456777888899999999999999988876 678888999999999999999641  


Q ss_pred             -CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 -DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 -~~~d~~~~e~al~aL~~l~~~~  226 (285)
                       +..+..++++++..+..-....
T Consensus        96 ~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          96 GSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence             1237889999999988776444

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=90.62  E-value=11  Score=33.08  Aligned_cols=126  Identities=19%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-CCHHHHHHHHHHHHHHhhCCh
Q psy355           62 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        62 ~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      ..--++|+++++++.++..    --..+|-.++..-.--=+.+-.|-+++|-+++.+. -+.=+|..|+.||..++..++
T Consensus        70 re~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~  145 (249)
T PF06685_consen   70 REERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP  145 (249)
T ss_pred             hhhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            3345799999999765542    12233332221110011112234556666666642 345789999999999999888


Q ss_pred             HhHHHHHhcCcHHHHHHh-hccCcHHHHHHHHHHHHHHhcCCc----hHHHHHHHCCcHHH
Q psy355          141 ECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNN----QVKQVLLSMGMVEQ  196 (285)
Q Consensus       141 ~~~~~f~~~~gi~~L~~~-L~~~~~~v~~ka~~~l~~L~~~~~----~~~~~l~~~g~v~~  196 (285)
                      .....+++  -+..++.. +...+.-+   -.+++++++.-.|    ...+.+.+.|.|+.
T Consensus       146 ~~Re~vi~--~f~~ll~~~l~~~~~~~---~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  146 ISREEVIQ--YFRELLNYFLERNPSFL---WGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             CCHHHHHH--HHHHHHHHHhccCchHH---HHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            87776652  23333333 43333222   2344555555443    23344445677654

The function of this family is unknown.

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=90.60  E-value=2.1  Score=36.26  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC---cchHHHHHHcCCHHHHHhhhcC---CC---------------H
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCS---IDYANDFLKMGGLPVLQPLLEG---SD---------------P   79 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~---~dna~~~~~~Gg~~~Lv~lL~s---~~---------------~   79 (285)
                      ...|++.+.+..+.+..+.       .+......   ..+..-|...|++..++.+|..   ..               .
T Consensus         3 ~~~l~~Li~f~~~~~~~~~-------~~~~~~~~~~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~   75 (207)
T PF01365_consen    3 LKILRDLIKFCMGSEEEDQ-------HLLKQRNGQPNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFK   75 (207)
T ss_dssp             HHHHHHHHHHHTTTS--SS--------SHHCCCCHHHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHH
T ss_pred             HHHHHHHHhHhCCCCcccc-------hHHHHhcCCcchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHH
Confidence            3556667777766664222       11111111   1234457788888888887763   22               4


Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI  159 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L  159 (285)
                      .+...+.+.|...+.+|+.+|..+.+.  ++.++..+... ....-..+..++..+.++|+.....+.+.. +..+++++
T Consensus        76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll  151 (207)
T PF01365_consen   76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL  151 (207)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence            678899999999999999999998774  55444444321 122224567888999999999888876555 88888888


Q ss_pred             ccCcHHHHHHHHHHHHHHhcC
Q psy355          160 QSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       160 ~~~~~~v~~ka~~~l~~L~~~  180 (285)
                      ....  -+.+-.-+++.+|..
T Consensus       152 ~~~g--r~~~~L~~L~~lc~~  170 (207)
T PF01365_consen  152 RKHG--RQPRYLDFLSSLCVC  170 (207)
T ss_dssp             ---------------------
T ss_pred             HHcC--CChHHHHHHhhhccc
Confidence            7632  223344555555543

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>KOG2062|consensus

Probab=90.36  E-value=1.4  Score=43.99  Aligned_cols=96  Identities=10%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             HHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           67 LPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        67 ~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      +..|+.. .+.++.+||..|.-+||=++-..|.         .+|..+.+|+.+.++.||.-|+.||+=.|.|.-...  
T Consensus       556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--  624 (929)
T KOG2062|consen  556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--  624 (929)
T ss_pred             HHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--
Confidence            3334433 3457889999999999999887776         478889999987899999999999998888754321  


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                           .+.+|-.+.+++..=||+-|+-+++-+.
T Consensus       625 -----Ai~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  625 -----AINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             -----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence                 1233344444555667777766666544

>KOG3665|consensus

Probab=90.15  E-value=2.7  Score=42.57  Aligned_cols=150  Identities=14%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             cCcchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCH--HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHH
Q psy355           53 CSIDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNP--FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL  129 (285)
Q Consensus        53 ~~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~--~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~  129 (285)
                      +..++...|.+.||...+..++++ .+.+++..+..++++++.--+  .....+..... ..+-.++....+...-..|+
T Consensus       501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ersY~~~  579 (699)
T KOG3665|consen  501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSIERSYNAA  579 (699)
T ss_pred             CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchhhHHHHHH
Confidence            446788899999999999999986 788999999999999986321  12222211111 12222444322234445555


Q ss_pred             HHHHHHhhCCh-----------------------HhHHHHHhcCcHHH-HHHhhccC-cHHHHHHHHHHHHHHhcCCchH
Q psy355          130 YAVSCLVRDNE-----------------------ECLKEFIKRDGFSV-LLRCIQSK-KEKLVIKSCFLIACLCTDNNQV  184 (285)
Q Consensus       130 ~ALs~l~r~~~-----------------------~~~~~f~~~~gi~~-L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~  184 (285)
                      ..|+.++.+.+                       .....++-..-+.+ +.+++..+ .+-.+-.|.|++.+++..+++.
T Consensus       580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~  659 (699)
T KOG3665|consen  580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEY  659 (699)
T ss_pred             HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhh
Confidence            55555554321                       11111221222333 55566554 5788899999999999999998


Q ss_pred             HHHHHHCCcHHHHHHhccc
Q psy355          185 KQVLLSMGMVEQMCVLIDI  203 (285)
Q Consensus       185 ~~~l~~~g~v~~L~~lL~~  203 (285)
                      .+.+.+.|+++.+.+.-..
T Consensus       660 ~~~~~~~~~~~~~~~~~~~  678 (699)
T KOG3665|consen  660 CKLVRESNGFELIENIRVL  678 (699)
T ss_pred             hhhhHhccchhhhhhcchh
Confidence            8888899999887765443

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=90.14  E-value=3.9  Score=31.43  Aligned_cols=88  Identities=23%  Similarity=0.355  Sum_probs=55.0

Q ss_pred             HHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC------
Q psy355           67 LPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN------  139 (285)
Q Consensus        67 ~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~------  139 (285)
                      +|.+...|. +..++.|..|..+++.++...+-..+.+ + ..+..+++-...   ....+.++-+|..++.+.      
T Consensus         8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l-~-~l~~~i~~~~~~---~~~~~~~l~~L~~l~q~q~~~~~l   82 (121)
T PF12397_consen    8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL-N-ALMESILKNWTQ---ETVQRQALICLIVLCQSQENVDSL   82 (121)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH-H-HHHHHHHhcccc---chhHHHHHHHHHHHHHcccccccC
Confidence            677888888 7899999999999999998766433322 1 133333333332   222578999999998764      


Q ss_pred             -hHhHHHHHhcCcHHHHHHhh
Q psy355          140 -EECLKEFIKRDGFSVLLRCI  159 (285)
Q Consensus       140 -~~~~~~f~~~~gi~~L~~~L  159 (285)
                       ....+.+....++...+.-+
T Consensus        83 p~~~~~~l~~~~~l~~~L~~l  103 (121)
T PF12397_consen   83 PRKVFKALLKLPDLIELLSEL  103 (121)
T ss_pred             CHHHHHHHHcCccHHHHHHHH
Confidence             12344555555544444444

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=90.02  E-value=5  Score=31.84  Aligned_cols=95  Identities=15%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      -.+...|+.+++..+.....     .+..|.+-|.+++++++..|..++-.++.+ ++.+...+.+..++..|..++.+.
T Consensus        23 w~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~   97 (140)
T PF00790_consen   23 WSLILEICDLINSSPDGAKE-----AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK   97 (140)
T ss_dssp             HHHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence            34555677777776444322     355677888899999999999999998877 477888888889999999998875


Q ss_pred             CCCCcc--HHHHHHHHHHHHHhcC
Q psy355          205 DALDTE--MNEHLLSALASLIKDS  226 (285)
Q Consensus       205 ~~~d~~--~~e~al~aL~~l~~~~  226 (285)
                      . ..+.  ++++++..|.......
T Consensus        98 ~-~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   98 K-TDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             T-THHHSHHHHHHHHHHHHHHHHT
T ss_pred             C-CCchhHHHHHHHHHHHHHHHHH
Confidence            1 1222  8999999888776554

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=90.01  E-value=10  Score=35.14  Aligned_cols=95  Identities=16%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh-cCCCH-HHHHHHHHHHHHHhhC
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL-EGSDP-ELRWRAAETVADIVQN   95 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL-~s~~~-~vr~~A~~~lg~~a~n   95 (285)
                      .||++.+=+-+   . +..+...+..++-.|..-+-+.+....|...|....+++.+ ..++. ..--.++-++..+.+.
T Consensus        20 ~Dev~ylld~l---~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d   95 (361)
T PF07814_consen   20 ADEVEYLLDGL---E-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD   95 (361)
T ss_pred             HHHHHHHHhhc---c-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC
Confidence            45544444433   3 34445678888999999998989999999999999999988 44444 3444445555555555


Q ss_pred             CHHHHHHHHhcCcHHHHHHhhc
Q psy355           96 NPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        96 n~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      .+ ....+.+.+.+..+++|+.
T Consensus        96 ~~-~~~l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen   96 GL-NMHLLLDRDSLRLLLKLLK  116 (361)
T ss_pred             Cc-chhhhhchhHHHHHHHHhc
Confidence            43 3444556677777788888

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG4653|consensus

Probab=89.84  E-value=19  Score=36.94  Aligned_cols=113  Identities=15%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             CCHHHHHh-hhcC---CCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355           65 GGLPVLQP-LLEG---SDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus        65 Gg~~~Lv~-lL~s---~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      ..+|-+.. +.++   +.++-|...-.+|+++++- ++-++.+..  -.+..+++-++ +++...|..++.+++.+|+-.
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvr-epd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVR-EPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcC-CchHHHHHhHHHHHHHHHHHH
Confidence            34555655 4443   2245566666888888773 444444332  34555666666 466778999999999998755


Q ss_pred             hHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCC
Q psy355          140 EECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       140 ~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~  181 (285)
                      ......|. ...+..++.+.+. +..-+|+.|+.++..+..+.
T Consensus       879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t  920 (982)
T KOG4653|consen  879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT  920 (982)
T ss_pred             hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence            44333333 2234455555555 46899999999999998874

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=89.68  E-value=11  Score=32.68  Aligned_cols=140  Identities=20%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             HHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           67 LPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        67 ~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      ++.|+. +-+..++.++...+..|+.++.++..+...     ++..|..+... +....+.-+...+..+...++..+  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence            344544 566789999999999999999876122222     34455566664 334445566666677766655443  


Q ss_pred             HHhcCcHHHHHHh--------hcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhc-ccCCCCCccHHHH
Q psy355          146 FIKRDGFSVLLRC--------IQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI-DIEDALDTEMNEH  214 (285)
Q Consensus       146 f~~~~gi~~L~~~--------L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL-~~~~~~d~~~~e~  214 (285)
                          +.+..++..        ..+  .........+..+..+|...|+.     -..+++.+..+| ...   +...+..
T Consensus        74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~---~~~~~al  141 (234)
T PF12530_consen   74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSC---DEVAQAL  141 (234)
T ss_pred             ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccc---cHHHHHH
Confidence                222322222        111  23566666678899999988871     123667888888 565   7788889


Q ss_pred             HHHHHHHHHhcC
Q psy355          215 LLSALASLIKDS  226 (285)
Q Consensus       215 al~aL~~l~~~~  226 (285)
                      ++.+|..+....
T Consensus       142 ale~l~~Lc~~~  153 (234)
T PF12530_consen  142 ALEALAPLCEAE  153 (234)
T ss_pred             HHHHHHHHHHHh
Confidence            999998888433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.57  E-value=3  Score=41.72  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh------cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC-
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN-  139 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~------~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~-  139 (285)
                      +..++.||.|++-.+|..-..+.||++..-..-.+ .++      ...+..|..-|. +..+-+|.||+..+++|+.-+ 
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~q-m~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~s  378 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQ-MVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNS  378 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchh-hHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCcc
Confidence            56778899999999999999999998853111001 111      124444555555 467899999999999997643 


Q ss_pred             --hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          140 --EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       140 --~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                        +...+.|     +...++.|++.+.-||++|.-+++.|....|
T Consensus       379 k~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         379 KTVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             cccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence              2223333     4567889999999999999999999987765

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=89.50  E-value=3.9  Score=30.55  Aligned_cols=93  Identities=14%  Similarity=0.131  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC  158 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~  158 (285)
                      +||.+|+.-|-+=-.++--+...+. ..+.+..|+.-+... +......++.-|+.++++ |.+...+.+.|+...|.++
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl   79 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL   79 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence            5777777766553333333333333 456788888888874 456888999999998885 6677788889999997776


Q ss_pred             hccCcHHHHHHHHHHH
Q psy355          159 IQSKKEKLVIKSCFLI  174 (285)
Q Consensus       159 L~~~~~~v~~ka~~~l  174 (285)
                      -...++..+...--++
T Consensus        80 r~~~~~~~~~~id~il   95 (98)
T PF14726_consen   80 RPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HhcCCHHHHHHHHHHH
Confidence            6555677766554443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.44  E-value=4.9  Score=32.91  Aligned_cols=115  Identities=11%  Similarity=0.195  Sum_probs=80.9

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc--HHHHHHhhccC-cHHHHHHHHHHHHHHhc---CC
Q psy355          108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG--FSVLLRCIQSK-KEKLVIKSCFLIACLCT---DN  181 (285)
Q Consensus       108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g--i~~L~~~L~~~-~~~v~~ka~~~l~~L~~---~~  181 (285)
                      .+..+.++|.+ ++..-|-.++..+...+..++.  +.|.+.++  +..++..|+.+ +..++.-|+.++..+..   +.
T Consensus        26 l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45667888886 5678888888888888887643  45655543  46778888876 57788888888888764   46


Q ss_pred             chHHHHHHHC---CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          182 NQVKQVLLSM---GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       182 ~~~~~~l~~~---g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      |+..+.+.--   ++++.++++++     +....+.++.+|..++..+|...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~-----~~~~~~~~l~~L~~ll~~~ptt~  149 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQ-----DSSCPETALDALATLLPHHPTTF  149 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHCCccc
Confidence            7766555433   34445555544     24678899999999999888533

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=88.71  E-value=2.8  Score=32.68  Aligned_cols=76  Identities=9%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH-hhcccCcccHHHHHHHHHH------HccChHhhHHHHHHHH
Q psy355          193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ-SLCRLEPLNLKFKLNFIKE------KHAGNEVYHKELEHVN  265 (285)
Q Consensus       193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~l~~~~e~~~~~~~~~  265 (285)
                      +++.|.+=|+..   ++-++-++|..|.+++..++..+ ..++. ..   ..++...+      .+.+...++.+.+.|.
T Consensus        39 i~d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G~~~f~~~~~~-~~---~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~  111 (122)
T cd03572          39 LLEYLLKRLKRS---SPHVKLKVLKIIKHLCEKGNSDFKRELQR-NS---AQIRECANYKGPPDPLKGDSLNEKVREEAQ  111 (122)
T ss_pred             HHHHHHHHhcCC---CCcchHHHHHHHHHHHhhCCHHHHHHHHH-hH---HHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence            445666667776   78899999999999998887433 22221 11   12222111      2233557899999999


Q ss_pred             HHHHHhcCCC
Q psy355          266 SVLTEVFEED  275 (285)
Q Consensus       266 ~il~~~f~~~  275 (285)
                      .++...|+.+
T Consensus       112 El~~~if~~~  121 (122)
T cd03572         112 ELIKAIFSYS  121 (122)
T ss_pred             HHHHHHhccC
Confidence            9999999865

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=88.52  E-value=11  Score=30.02  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             CHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHH-HHHhhccC--CCHHHHHHHHHHHHHHhh
Q psy355           66 GLPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNL-LLTSIEHD--SNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        66 g~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~-L~~LL~~~--~~~~v~~~a~~ALs~l~r  137 (285)
                      ++..|.+=|+ +.++.++..|+.+|..++.|. +.++..+...+.+.. |++++...  .+..|+.+.+..|-.-..
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~  115 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD  115 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence            3555555455 578999999999999999987 467778888899997 99999732  345888888877766554

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=88.37  E-value=16  Score=31.73  Aligned_cols=185  Identities=17%  Similarity=0.217  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhcC-cchHHHHHHcCCHH-HHHh-------hhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355           40 ICIGALDNLSDYVCS-IDYANDFLKMGGLP-VLQP-------LLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT  106 (285)
Q Consensus        40 ~~~~al~~L~~lv~~-~dna~~~~~~Gg~~-~Lv~-------lL~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~  106 (285)
                      .++.||++|..--++ .|.|-.+-..-|++ .|++       +|+    ++...-|.-.+-.|-.+....|+.+..++++
T Consensus        61 ~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~A  140 (315)
T COG5209          61 PKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDA  140 (315)
T ss_pred             HHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeec
Confidence            466688888877766 35565554444444 3332       122    1223334333333444455689989888887


Q ss_pred             Cc---HHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355          107 DF---LNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       107 g~---l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~  181 (285)
                      ..   +-+++...++ .+-+-+|-.++..|+.++.+..+-.-.|+ ....+|.+++++..++.--|.-|+|.+..+.-.+
T Consensus       141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            53   2333333332 34457899999999999998766555555 4678999999999999999999999998877654


Q ss_pred             ch---HHHHHHH----CCcHHHHH-HhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          182 NQ---VKQVLLS----MGMVEQMC-VLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       182 ~~---~~~~l~~----~g~v~~L~-~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ..   .++.+-.    ..++..++ ++.+.+   ...+..+++++-..+. +.|.
T Consensus       221 vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLs-d~p~  271 (315)
T COG5209         221 VGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLS-DKPH  271 (315)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeec-CCHh
Confidence            31   1222211    12233333 233344   6778888888887764 3343

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.21  E-value=1.4  Score=38.33  Aligned_cols=80  Identities=19%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHH-------Hhhhc-CCCHHHHHHHHHHHHHHhhCCHHHH-HHHHhcCcH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVL-------QPLLE-GSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFL  109 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~L-------v~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q-~~v~~~g~l  109 (285)
                      .-+--||+.|..++=.-.|..-+...|.+..+       +++|. .+++..|+.|..+|.+++++..... ....+.+.+
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            45667888888887665666666777766544       44444 4889999999999999999887755 555778999


Q ss_pred             HHHHHhhcc
Q psy355          110 NLLLTSIEH  118 (285)
Q Consensus       110 ~~L~~LL~~  118 (285)
                      ..|+..+..
T Consensus       219 ~~Li~FiE~  227 (257)
T PF12031_consen  219 SHLIAFIED  227 (257)
T ss_pred             HHHHHHHHH
Confidence            999999985

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.86  E-value=15  Score=32.23  Aligned_cols=169  Identities=22%  Similarity=0.251  Sum_probs=103.1

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      ...+...+.+=+++-+-++..++--++- +|..-..+...+  ....+..++..   ...+..+--++..++|+..+. .
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~  142 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-P  142 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-C
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-c
Confidence            4556666666556669999999976665 555555554443  23444444443   246788888999999988754 4


Q ss_pred             hHHHHHhcCc--HHHHHHhhccC----cHHHHHHHHHHHHHHhcC----C--chHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355          142 CLKEFIKRDG--FSVLLRCIQSK----KEKLVIKSCFLIACLCTD----N--NQVKQVLLSMGMVEQMCVLIDIEDALDT  209 (285)
Q Consensus       142 ~~~~f~~~~g--i~~L~~~L~~~----~~~v~~ka~~~l~~L~~~----~--~~~~~~l~~~g~v~~L~~lL~~~~~~d~  209 (285)
                      ....+.....  +--.+..+.+.    +..+|..++.++.|++..    .  .+...     .++..+...+... ..|+
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~-----~ll~~i~~~~~~~-~~d~  216 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS-----ELLSSIIEVLSRE-ESDE  216 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH-----HHHHHHHHHCHCC-HTSH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHhccc-cCCH
Confidence            4555554333  33333333333    789999999999998642    1  11111     1334455533221 2388


Q ss_pred             cHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH
Q psy355          210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN  245 (285)
Q Consensus       210 ~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~  245 (285)
                      +..-.++-||++++..++.....+..  +++.+.+.
T Consensus       217 Ea~~R~LvAlGtL~~~~~~~~~~~~~--l~~~~~~~  250 (268)
T PF08324_consen  217 EALYRLLVALGTLLSSSDSAKQLAKS--LDVKSVLS  250 (268)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHCCC--CTHHHHHH
T ss_pred             HHHHHHHHHHHHHhccChhHHHHHHH--cChHHHHH
Confidence            88999999999999777766666643  34555554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=87.79  E-value=20  Score=33.51  Aligned_cols=143  Identities=12%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCH-HHHHhhhc------CCCHHHHHHHHHHHH
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGL-PVLQPLLE------GSDPELRWRAAETVA   90 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~-~~Lv~lL~------s~~~~vr~~A~~~lg   90 (285)
                      .||.|.+++-++    +++.+..+..|.+-+..+++.-.  ....  +.+ ..+-.+|+      +.+..-+..|+..+|
T Consensus       209 ddP~EYIrrd~e----~sd~~TrR~AA~dfl~~L~~~~~--~~v~--~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  209 DDPEEYIRRDLE----GSDSDTRRRAACDFLRSLCKKFE--KQVT--SILMQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HSHHHHHHHHSC----SS---SHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             cCHHHHHHhhcc----ccccCCcHHHHHHHHHHHHHHHh--HHHH--HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            455666665332    23334567777777777775422  1111  111 22233444      456688899999999


Q ss_pred             HHhhCCHHH------------HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355           91 DIVQNNPFS------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC  158 (285)
Q Consensus        91 ~~a~nn~~~------------q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~  158 (285)
                      .++.-....            =..+....++|-|-  -.....+-+|..|++-++..-..-++.  .+.  +.+|.++++
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~~--~l~--~~~~~l~~~  354 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPKE--QLL--QIFPLLVNH  354 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH--HHH--HHHHHHHHH
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCHH--HHH--HHHHHHHHH
Confidence            998754321            12344444556554  222356789999999999875544432  233  579999999


Q ss_pred             hccCcHHHHHHHHHHH
Q psy355          159 IQSKKEKLVIKSCFLI  174 (285)
Q Consensus       159 L~~~~~~v~~ka~~~l  174 (285)
                      |++++.-|+.-||.+|
T Consensus       355 L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  355 LQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TTSS-HHHHHHHHHHH
T ss_pred             hCCCCcchhhhhhhhC
Confidence            9999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=87.61  E-value=1.8  Score=36.79  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             HHHHHHHHhcCcHHHHHHhhccCC--C---------------HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh
Q psy355           97 PFSQNFIIQTDFLNLLLTSIEHDS--N---------------TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI  159 (285)
Q Consensus        97 ~~~q~~v~~~g~l~~L~~LL~~~~--~---------------~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L  159 (285)
                      ...|..+.+.|++..++.+|...-  .               ..+-..+...|..++++++.++..+.+.  ++.++..+
T Consensus        33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~  110 (207)
T PF01365_consen   33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIF  110 (207)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----H
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHH
Confidence            456777888899999888887521  1               2566788889999999999998887753  33222222


Q ss_pred             ccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          160 QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       160 ~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      .......-.-+.-++..+..+++.....+.+.. |..++.+|...   .  -....+..|..|...+.
T Consensus       111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~---g--r~~~~L~~L~~lc~~~g  172 (207)
T PF01365_consen  111 MQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKH---G--RQPRYLDFLSSLCVCNG  172 (207)
T ss_dssp             HCCCH-TTHHHHHHHHHHHTT-----------------------------------------------
T ss_pred             HHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHc---C--CChHHHHHHhhhcccCC
Confidence            221111113456677888899998888877655 89999999873   2  23345666766665443

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>KOG0414|consensus

Probab=87.33  E-value=3.1  Score=43.73  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHh---cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQ---TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---n~~~q~~v~~---~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      +..|+.+|.+.+-.+|-.-..++||++-.   ++. +....+   .-.+..|..-+. +.+.-+|.+++.....|++-+.
T Consensus       314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e-~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s  391 (1251)
T KOG0414|consen  314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEE-LEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS  391 (1251)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence            56777889999999999999999998742   222 111111   124444544444 4678999999999999988654


Q ss_pred             HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355          141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ  183 (285)
Q Consensus       141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~  183 (285)
                      .....+-  ..+...++-|.+.+.-||++|..+++.+...+|.
T Consensus       392 ~p~~~~~--eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf  432 (1251)
T KOG0414|consen  392 IPLGSRT--EVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF  432 (1251)
T ss_pred             CCccHHH--HHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence            3322221  2345666778888999999999999999988773

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=87.30  E-value=14  Score=33.09  Aligned_cols=70  Identities=14%  Similarity=0.344  Sum_probs=47.1

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH-HHHHhcCcHHHHHH----hhc---c----CCCHHHHHHHHHHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFLNLLLT----SIE---H----DSNTTVQVKSLYAVSC  134 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q-~~v~~~g~l~~L~~----LL~---~----~~~~~v~~~a~~ALs~  134 (285)
                      +|+++.++...++.+|.+++.++..+..+-+... ..+.+.|..+.+-.    +|.   +    +.+..+-..|.-|+-.
T Consensus       121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~  200 (282)
T PF10521_consen  121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS  200 (282)
T ss_pred             HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence            7899999999999999999999999998766433 23566675554433    222   0    1233455555555555


Q ss_pred             Hh
Q psy355          135 LV  136 (285)
Q Consensus       135 l~  136 (285)
                      ++
T Consensus       201 L~  202 (282)
T PF10521_consen  201 LL  202 (282)
T ss_pred             HH
Confidence            53

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=86.99  E-value=9.1  Score=29.01  Aligned_cols=93  Identities=13%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      ...+..|+-+++.++....     ..+..|..-|.+++++++-+|..++-+++.+ ++.+...+.+..++..++.+...+
T Consensus        18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~   92 (115)
T cd00197          18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK   92 (115)
T ss_pred             HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence            3445556666655433322     2355667778888999999999999999876 567777788888887776641111


Q ss_pred             ---CCCCccHHHHHHHHHHHHH
Q psy355          205 ---DALDTEMNEHLLSALASLI  223 (285)
Q Consensus       205 ---~~~d~~~~e~al~aL~~l~  223 (285)
                         ...+..+|++++..+...+
T Consensus        93 ~~~~~~~~~Vr~k~~~l~~~w~  114 (115)
T cd00197          93 LLGDDVSTNVREKAIELVQLWA  114 (115)
T ss_pred             cccCCCChHHHHHHHHHHHHHh
Confidence               1236788999988776543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=86.82  E-value=3  Score=30.72  Aligned_cols=71  Identities=13%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ...+..|.++..-+|..+...++.|+....  .....-.+++..+...|+.+   |+-+--.|..+|..++...|.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChH
Confidence            345666788888899999999999998765  11222245677888889988   999999999999999988875

>KOG3665|consensus

Probab=86.60  E-value=33  Score=34.94  Aligned_cols=95  Identities=25%  Similarity=0.311  Sum_probs=66.9

Q ss_pred             HHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCc--hHHHHHHHCCcHHHHHHhcccCCCC
Q psy355          131 AVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLIDIEDAL  207 (285)
Q Consensus       131 ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~--~~~~~l~~~g~v~~L~~lL~~~~~~  207 (285)
                      +|.+++..++.....|++.||...+..++..- ...++.++...+.+++...+  +.......-.+ ..+..++...  .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w--~  570 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKW--D  570 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhc--c
Confidence            56678888999999999999999999999964 68999999999999987542  12211111111 2333345544  1


Q ss_pred             CccHHHHHHHHHHHHHhcChH
Q psy355          208 DTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       208 d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +.+.--.+...|..++.+++.
T Consensus       571 ~~ersY~~~siLa~ll~~~~~  591 (699)
T KOG3665|consen  571 SIERSYNAASILALLLSDSEK  591 (699)
T ss_pred             hhhHHHHHHHHHHHHHhCCCc
Confidence            336677788888888888765

>PLN03205 ATR interacting protein; Provisional

Probab=86.10  E-value=8  Score=36.34  Aligned_cols=163  Identities=10%  Similarity=0.130  Sum_probs=104.5

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHhcCcHHHH---HHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQ---NNPFSQNFIIQTDFLNLL---LTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~---nn~~~q~~v~~~g~l~~L---~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      +.+|+.|..-++..+..+++++|-.+.|   ||..--++-.+.+++..+   .+.--..+...||..|++-.--|++...
T Consensus       325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn  404 (652)
T PLN03205        325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD  404 (652)
T ss_pred             HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence            4677777778999999999998887665   333322233344444432   2222223456788888877666665433


Q ss_pred             H--hHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCC--------------------c-----hHHHHHHHCC
Q psy355          141 E--CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDN--------------------N-----QVKQVLLSMG  192 (285)
Q Consensus       141 ~--~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~--------------------~-----~~~~~l~~~g  192 (285)
                      +  ..+.|.....+..+.++|+.. -..||+.|..++.=|+.-.                    .     ...+.+-  .
T Consensus       405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS--s  482 (652)
T PLN03205        405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG--K  482 (652)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHH--H
Confidence            3  356677667788888889875 5889999988877654211                    0     1111111  2


Q ss_pred             cHHHHHHhcccC--CCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          193 MVEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       193 ~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      +++.|...+..+  +..|.+++..+...|..++..+...++
T Consensus       483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfE  523 (652)
T PLN03205        483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYE  523 (652)
T ss_pred             HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCce
Confidence            446677777765  356788899999999999988865443

>KOG1243|consensus

Probab=85.82  E-value=13  Score=37.11  Aligned_cols=130  Identities=12%  Similarity=0.149  Sum_probs=92.2

Q ss_pred             CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q psy355           37 QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  114 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~--~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~  114 (285)
                      +.+++..-+.-|.+.++.  ...+++..-.+|.|+..+..++  ..+..+.. -+|.....-+      +..+++|.|++
T Consensus       267 s~~eK~~Ff~~L~~~l~~--~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~-k~~k~ld~~e------yq~~i~p~l~k  337 (690)
T KOG1243|consen  267 SVEEKQKFFSGLIDRLDN--FPEEIIASKVLPILLAALEFGDAASDFLTPLF-KLGKDLDEEE------YQVRIIPVLLK  337 (690)
T ss_pred             cHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhccccchhhhhHHH-Hhhhhccccc------cccchhhhHHH
Confidence            356777777777665543  3457777777888887776554  34444433 3344443333      45678999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355          115 SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~  179 (285)
                      |+.. .+..+|...+.-+=..+.+-+.   ..+..-.+|.+...+.+++..+|..+.-.+..|+.
T Consensus       338 LF~~-~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~  398 (690)
T KOG1243|consen  338 LFKS-PDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP  398 (690)
T ss_pred             HhcC-cchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence            9997 7889998887777777765443   35667789999999999999999999888888774

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=85.76  E-value=40  Score=34.32  Aligned_cols=114  Identities=11%  Similarity=0.170  Sum_probs=78.5

Q ss_pred             cCCHHHHHhhhc-C-------CCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355           64 MGGLPVLQPLLE-G-------SDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS  133 (285)
Q Consensus        64 ~Gg~~~Lv~lL~-s-------~~~~vr~~A~~~lg~~a~--nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs  133 (285)
                      .|.++.++..|. +       .++.-...|++.++++-.  .-+..-.-+++.=+++.++.-+++ +.--++..||..||
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHH
Confidence            466777777773 2       234455678888888765  222223345555566667777775 55678999999999


Q ss_pred             HHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355          134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       134 ~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~  181 (285)
                      .+--+.+..-   +-...++....+|++.+-.|+..|+-++..+..+.
T Consensus       486 ~~eeDfkd~~---ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~  530 (970)
T COG5656         486 TIEEDFKDNG---ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE  530 (970)
T ss_pred             HHHHhcccch---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence            9865544422   22345667788999999999999999999988764

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=85.32  E-value=14  Score=32.65  Aligned_cols=146  Identities=18%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-CCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      |=.+|+++++.+|..|...|+.+...-|.-   .+...-+..|+..+.+. .|...-..++.++..+++........   
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~---   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES---   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence            346899999999999999999999876632   12233345555444321 23344444577777776433211111   


Q ss_pred             cCcHHHHHHhhc-----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          149 RDGFSVLLRCIQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       149 ~~gi~~L~~~L~-----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                        +...+..+.+     +-....|..+-.++..+..........+ ..+++..++++....  .||.-.-.+...+..++
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~i~  152 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGE--KDPRNLLLSFKLLKVIL  152 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHH
Confidence              2222222222     2245677777777777776543222111 235777888887764  47766656555555555


Q ss_pred             hcC
Q psy355          224 KDS  226 (285)
Q Consensus       224 ~~~  226 (285)
                      +..
T Consensus       153 ~~~  155 (262)
T PF14500_consen  153 QEF  155 (262)
T ss_pred             Hhc
Confidence            444

>KOG1566|consensus

Probab=84.96  E-value=30  Score=31.47  Aligned_cols=203  Identities=14%  Similarity=0.155  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCc------------------chHHHHHHcCCHHHHHhhhcCCCHHH
Q psy355           21 GAELEKIIKTLKENQD-QKDICIGALDNLSDYVCSI------------------DYANDFLKMGGLPVLQPLLEGSDPEL   81 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~------------------dna~~~~~~Gg~~~Lv~lL~s~~~~v   81 (285)
                      +..+++.+..+..+.+ ++..+..+++++..-+.++                  .-+..|.+.|.+..++..|.-.+-+-
T Consensus        16 Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~   95 (342)
T KOG1566|consen   16 VRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFES   95 (342)
T ss_pred             HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchh
Confidence            4555555555555542 2344555555555433211                  11345888898888888877666555


Q ss_pred             HHHHHHHHHHH-------------------------hhCCHHHHHHHHhcCcH-------HHHHHhhccC----------
Q psy355           82 RWRAAETVADI-------------------------VQNNPFSQNFIIQTDFL-------NLLLTSIEHD----------  119 (285)
Q Consensus        82 r~~A~~~lg~~-------------------------a~nn~~~q~~v~~~g~l-------~~L~~LL~~~----------  119 (285)
                      |..++.+..++                         ..|-..+++.++.+|.+       +.|.+++-.+          
T Consensus        96 rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~v  175 (342)
T KOG1566|consen   96 RKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYV  175 (342)
T ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHH
Confidence            55555555543                         22211134444444432       3333333221          


Q ss_pred             --CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc----HHHHHHhhccCcHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Q psy355          120 --SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG----FSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---QVKQVLLS  190 (285)
Q Consensus       120 --~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g----i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~---~~~~~l~~  190 (285)
                        +.-.+...|......+.+.+......|+..+-    .+.--.++.+.+.-+++.+.-++..+..+.+   ...+++-+
T Consensus       176 q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss  255 (342)
T KOG1566|consen  176 QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISS  255 (342)
T ss_pred             hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcC
Confidence              23345666777777777767777777887664    3446678889999999999999999887643   34566666


Q ss_pred             CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ...+..++.+|..+   ...+|-.|-...+-.+...
T Consensus       256 ~enLKlmM~llrdk---skniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  256 PENLKLMMNLLRDK---SKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHHHHHhhCc---cccchHHHHHHHHHHhcCC
Confidence            67888999999988   8888888888776655443

>KOG2073|consensus

Probab=84.65  E-value=8.6  Score=39.59  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHH--hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355           56 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS  133 (285)
Q Consensus        56 dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~--a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs  133 (285)
                      +.-..|.+.-|++.|+.+|           ++.+++-  ...+..+.+++-+...++.++.++....++.++..|-..|+
T Consensus       148 ~~v~~~l~hi~~stlMD~L-----------lkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~  216 (838)
T KOG2073|consen  148 NFVDLFLKHIDISTLMDFL-----------LKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLC  216 (838)
T ss_pred             HHHHHHHHHcCccHHHHHH-----------HHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHH
Confidence            3444566666677766643           3444332  12224567788888999999999998778899999999999


Q ss_pred             HHhhC
Q psy355          134 CLVRD  138 (285)
Q Consensus       134 ~l~r~  138 (285)
                      .|++.
T Consensus       217 ~iv~~  221 (838)
T KOG2073|consen  217 AIVRL  221 (838)
T ss_pred             HHHhc
Confidence            99997

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.42  E-value=4.1  Score=34.04  Aligned_cols=67  Identities=10%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          152 FSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ++.++++.-+++..++..|..++.-+.+.   +|        .-++|.|+.|..++   ++.++..|...+..+.+..+.
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~---~~~ir~~A~~~l~~l~eK~~s   78 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSP---NPSIRSRAYQLLKELHEKHES   78 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCC---ChHHHHHHHHHHHHHHHHhHH
Confidence            35667777889999999999999988776   34        23789999999998   999999999999999988875


Q ss_pred             H
Q psy355          229 A  229 (285)
Q Consensus       229 ~  229 (285)
                      .
T Consensus        79 ~   79 (187)
T PF12830_consen   79 L   79 (187)
T ss_pred             H
Confidence            4

>KOG1943|consensus

Probab=83.69  E-value=48  Score=34.99  Aligned_cols=142  Identities=13%  Similarity=0.131  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH---hHHHHHh--cC
Q psy355           76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE---CLKEFIK--RD  150 (285)
Q Consensus        76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~---~~~~f~~--~~  150 (285)
                      |=++.+|+.|+++|..++.-.|+    ....+.+|+|+....+ ++...|.-+.-|.+.++.+...   ....+-+  ..
T Consensus       555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~  629 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA  629 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence            56899999999999999987775    4556789999988775 5677888777777776654221   1111111  12


Q ss_pred             cHH-----HHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          151 GFS-----VLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       151 gi~-----~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      |++     ...+-++.+ ....+.-.+.++..+..+.+.....++..++-..+.+.+..+   + .+|+.+..++..+..
T Consensus       630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~---n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP---N-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch---H-HHHHHHHHHHHHHHH
Confidence            321     112222222 234555566667777666666666777677777777777555   4 788888888877764


Q ss_pred             cC
Q psy355          225 DS  226 (285)
Q Consensus       225 ~~  226 (285)
                      ..
T Consensus       706 ~y  707 (1133)
T KOG1943|consen  706 TY  707 (1133)
T ss_pred             HH
Confidence            43

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=83.44  E-value=25  Score=29.60  Aligned_cols=130  Identities=13%  Similarity=0.100  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhhCChHhHHHHHhc----------------CcHHHHHHhhcc------CcHHHHHHHHHHHHHHhc
Q psy355          122 TTVQVKSLYAVSCLVRDNEECLKEFIKR----------------DGFSVLLRCIQS------KKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~----------------~gi~~L~~~L~~------~~~~v~~ka~~~l~~L~~  179 (285)
                      ....-.++..|||+++....+ ..+++.                ..+..|+.++..      ....-....+.+++|+++
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             cchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            345667888899998854433 333322                245566666654      223444567788888754


Q ss_pred             CCchHHHHHHHCC--c--HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChH
Q psy355          180 DNNQVKQVLLSMG--M--VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNE  255 (285)
Q Consensus       180 ~~~~~~~~l~~~g--~--v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~  255 (285)
                       .+..|+.+++..  .  +..|+.++.+.   +.--|.-++.+|.|++=.....-..-....   .++|-..+--+.+++
T Consensus        88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~---~~iLp~LLlPLaGpE  160 (192)
T PF04063_consen   88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDE---VDILPYLLLPLAGPE  160 (192)
T ss_pred             -CHHHHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchh---hhhHHHHHhhccCCC
Confidence             578888888653  3  66777777776   777788888999888755543211111110   234445555666665


Q ss_pred             hhHH
Q psy355          256 VYHK  259 (285)
Q Consensus       256 e~~~  259 (285)
                      |+.+
T Consensus       161 e~d~  164 (192)
T PF04063_consen  161 ELDE  164 (192)
T ss_pred             cCCH
Confidence            5443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=83.42  E-value=17  Score=27.45  Aligned_cols=70  Identities=19%  Similarity=0.225  Sum_probs=52.8

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHh-----hccCCCHHHHHHHHHHHHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTS-----IEHDSNTTVQVKSLYAVSCL  135 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~L-----L~~~~~~~v~~~a~~ALs~l  135 (285)
                      ++..|.+=|+++++.++-.|+.+|-.++.|. +.++..+.....+..+++.     ...+.+..||.++...+...
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w  113 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW  113 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence            3556666678899999999999999999975 5677778777777777653     22234678999998877653

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.14  E-value=14  Score=32.94  Aligned_cols=70  Identities=10%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH-HHHHhcCcHHHHHHhh----c--------cCcHHHHHHHHHHH
Q psy355          108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL-KEFIKRDGFSVLLRCI----Q--------SKKEKLVIKSCFLI  174 (285)
Q Consensus       108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~-~~f~~~~gi~~L~~~L----~--------~~~~~v~~ka~~~l  174 (285)
                      ++|+++.+++. .++.+|..++..+..+..+.+... ..+.+.|-.+++...+    .        ..+..+-..|--++
T Consensus       120 iiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            79999999996 688999999999999998776654 2355666666554443    3        22455666666666


Q ss_pred             HHHh
Q psy355          175 ACLC  178 (285)
Q Consensus       175 ~~L~  178 (285)
                      ..|+
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            6664

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=82.64  E-value=5.6  Score=37.60  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhcCcch--HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355           43 GALDNLSDYVCSIDY--ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  120 (285)
Q Consensus        43 ~al~~L~~lv~~~dn--a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~  120 (285)
                      -..+-|..++...+.  +..+....-+..|+.++.|+++.-|.....++-++-...+..+.. +....-..|.+.+....
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~-Ir~~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSF-IRKSINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHH-HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhcCcc
Confidence            445666667766443  334555556778999999999999999999999988776655543 34446666777776544


Q ss_pred             CHHHHHHHHHHHHHHhhCCh
Q psy355          121 NTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus       121 ~~~v~~~a~~ALs~l~r~~~  140 (285)
                      ...--...+.-++.++.|..
T Consensus       188 ~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--
T ss_pred             cccCHHHHHHHHHHHHhccC
Confidence            45556778888888888854

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2676|consensus

Probab=82.50  E-value=1.4  Score=40.54  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355           84 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFI  147 (285)
Q Consensus        84 ~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~  147 (285)
                      +-.+.||++|--++..|+.+.+.|+++.++.-.. ++.++-++...++++-++..+|..+|+.+-
T Consensus       375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~  439 (478)
T KOG2676|consen  375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG  439 (478)
T ss_pred             HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence            4667999999999999999999999998876544 357899999999999999999998886553

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=82.34  E-value=28  Score=30.85  Aligned_cols=168  Identities=15%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHhhcCc-----chHHHHHHcCCHH-HHHhhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHH
Q psy355           39 DICIGALDNLSDYVCSI-----DYANDFLKMGGLP-VLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN  110 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~-----dna~~~~~~Gg~~-~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~  110 (285)
                      ++....|.+|..++..-     +-+..+.+.+.++ -|+++|.+  +++.+-..+++++-+++.--+.+      .|-.|
T Consensus         9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~------~~~~~   82 (266)
T PF04821_consen    9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL------VESQP   82 (266)
T ss_pred             HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh------ccCCC
Confidence            45566677766665332     2244566666665 67776654  47889999999999888532211      11110


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-----------cCcHHHHHHHHHHHHHHhc
Q psy355          111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-----------SKKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-----------~~~~~v~~ka~~~l~~L~~  179 (285)
                               .+...+... .-+-....   ....+|.+.+.+..+++.+.           ..+..+-+-...+++|++.
T Consensus        83 ---------~~~~~~~~~-~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~  149 (266)
T PF04821_consen   83 ---------KDKNQRRNI-PELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLA  149 (266)
T ss_pred             ---------CChHHHHHH-HHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence                     111222111 11111111   12334555444554444431           1256778888899999885


Q ss_pred             CC----------------chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          180 DN----------------NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       180 ~~----------------~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      -.                ......+.+.|+...|+.+..+.  +..++....+..+..|.++..
T Consensus       150 Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~--~~~~f~~~lLEIi~ll~k~~~  211 (266)
T PF04821_consen  150 IPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSP--QESDFNLLLLEIIYLLFKGQD  211 (266)
T ss_pred             CCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCc--cccchhhHHHHHHHHHHcCCC
Confidence            31                14566777899999999988876  234577799999999988874

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>KOG2199|consensus

Probab=82.31  E-value=11  Score=35.25  Aligned_cols=99  Identities=19%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHH
Q psy355           25 EKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFI  103 (285)
Q Consensus        25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v  103 (285)
                      ...+...+++-.+.+.---.|+.+..+-.+.|++.+     ++..|.+=|++.+|.|...|+.+++.|+.|... .+..|
T Consensus        10 e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV   84 (462)
T KOG2199|consen   10 EQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV   84 (462)
T ss_pred             HHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence            344555555555544433344444444444555555     577888889999999999999999999988654 45556


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHH
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKS  128 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a  128 (285)
                      ........|..++.+.....|+.+.
T Consensus        85 sSr~F~~el~al~~~~~h~kV~~k~  109 (462)
T KOG2199|consen   85 SSRDFTTELRALIESKAHPKVCEKM  109 (462)
T ss_pred             hhhhHHHHHHHHHhhcccHHHHHHH
Confidence            6667788888888843444555443

>KOG1087|consensus

Probab=81.97  E-value=10  Score=36.47  Aligned_cols=69  Identities=16%  Similarity=0.234  Sum_probs=56.9

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHhhccC-CCHHHHHHHHHHHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSC  134 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~~LL~~~-~~~~v~~~a~~ALs~  134 (285)
                      ++..|.+-|++.++.++..|+.+|-.|+.|... +...|.+.++++-++++.+.. .+..||.+++..|=.
T Consensus        39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~  109 (470)
T KOG1087|consen   39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT  109 (470)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence            345566678888889999999999999998655 455788999999999999976 678999999877743

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=81.51  E-value=26  Score=35.47  Aligned_cols=82  Identities=23%  Similarity=0.324  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHH
Q psy355           77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLL  156 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~  156 (285)
                      ..+.-|..|+..||.+++..|..--.+++...++.|+++|..+.+..+...|+.+|.-+.=.-|.....++ ...+.+..
T Consensus        80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L-~~Lf~If~  158 (668)
T PF04388_consen   80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL-PDLFNIFG  158 (668)
T ss_pred             cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH-HHHHHHHH
Confidence            35678999999999999999988888999999999999999999999999999999888766555443333 13334444


Q ss_pred             Hhh
Q psy355          157 RCI  159 (285)
Q Consensus       157 ~~L  159 (285)
                      +++
T Consensus       159 Rl~  161 (668)
T PF04388_consen  159 RLL  161 (668)
T ss_pred             HHH
Confidence            444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=81.20  E-value=35  Score=29.50  Aligned_cols=127  Identities=20%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh-
Q psy355           38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS-  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L-  115 (285)
                      .+.....+..|..++... .+..-     .+..|..+...+....+.-+.+.+..+...++..-      +.+..++.. 
T Consensus        15 ~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~   83 (234)
T PF12530_consen   15 PELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLL   83 (234)
T ss_pred             hHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHH
Confidence            466777788888887654 22222     24566666777888888889999999998887643      445545444 


Q ss_pred             --------hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh-ccCcHHHHHHHHHHHHHHhcC
Q psy355          116 --------IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI-QSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       116 --------L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L-~~~~~~v~~ka~~~l~~L~~~  180 (285)
                              -..+..-........++..+|+..|..-     ..-++.+..+| +..+...+.-+.-+++.||..
T Consensus        84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~  152 (234)
T PF12530_consen   84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA  152 (234)
T ss_pred             HhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence                    1111222333444567777777776622     22456778888 788899999999999999944

>KOG2032|consensus

Probab=81.02  E-value=15  Score=35.33  Aligned_cols=116  Identities=15%  Similarity=0.247  Sum_probs=77.6

Q ss_pred             hcCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcC
Q psy355          105 QTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       105 ~~g~l~~L~~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~  180 (285)
                      +.|.+..++..+.   .+++..+|..|+..|+|.+.+.|.....-. .--+..+++.|.++ +..|+-.|..++..++..
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            4566666555443   246678999999999999998666543322 12344556666554 688888888877766543


Q ss_pred             --CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          181 --NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       181 --~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                        +.+...+++  .+.-.+..+..+.   ++++|..+...+..|+.-.
T Consensus       331 ~~~~~l~~~~l--~ialrlR~l~~se---~~~~R~aa~~Lfg~L~~l~  373 (533)
T KOG2032|consen  331 ASNDDLESYLL--NIALRLRTLFDSE---DDKMRAAAFVLFGALAKLA  373 (533)
T ss_pred             hhhcchhhhch--hHHHHHHHHHHhc---ChhhhhhHHHHHHHHHHHc
Confidence              344555555  3556777888888   8999988887777776443

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=80.90  E-value=7.9  Score=37.39  Aligned_cols=45  Identities=9%  Similarity=0.161  Sum_probs=37.4

Q ss_pred             CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      ...+.+++.+.+.++.|+.+|+.+.+..++..|+..|+.|++-+.
T Consensus        51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~   95 (475)
T PF04499_consen   51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR   95 (475)
T ss_pred             hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            345677788899999999999977788999999999998877543

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=80.78  E-value=25  Score=27.41  Aligned_cols=94  Identities=16%  Similarity=0.240  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc-hHHHHHHHC-CcHHHHHHhccc
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSM-GMVEQMCVLIDI  203 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~-g~v~~L~~lL~~  203 (285)
                      ....--|+.+++.++.....+     ...|.+=|+++++.|+.|+..+|.++|..++ .++..+.+. ..|..+.+.=..
T Consensus        19 gy~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~   93 (122)
T cd03572          19 GYLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGP   93 (122)
T ss_pred             hHHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCC
Confidence            344556778888766655444     4677888888899999999999999998765 555555544 344555544332


Q ss_pred             C-----CCCCccHHHHHHHHHHHHHh
Q psy355          204 E-----DALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       204 ~-----~~~d~~~~e~al~aL~~l~~  224 (285)
                      +     +.....+|+.|-.++..|..
T Consensus        94 ~Dp~~Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          94 PDPLKGDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CCcccCcchhHHHHHHHHHHHHHHhc
Confidence            3     11223577777777766654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=80.27  E-value=54  Score=31.01  Aligned_cols=217  Identities=15%  Similarity=0.173  Sum_probs=120.3

Q ss_pred             CHHhHHHHHHHHHHhc---CCHHHHHHHHHH-HHhccCC---CHHHHHHHHHHHHHhhcCc-----chHHHHHHcCCHHH
Q psy355            2 NEANRGFLLDALNSMM---VNVGAELEKIIK-TLKENQD---QKDICIGALDNLSDYVCSI-----DYANDFLKMGGLPV   69 (285)
Q Consensus         2 ~~e~~~~L~~al~~~~---~d~~~~mk~~l~-~l~~~~~---~~~~~~~al~~L~~lv~~~-----dna~~~~~~Gg~~~   69 (285)
                      |+.+|++|+..+..+-   .+--..|++++. ++.+.-.   ..--....|+-+..++.+-     +.-..|.    ...
T Consensus       146 D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl----~~v  221 (409)
T PF01603_consen  146 DPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFL----RKV  221 (409)
T ss_dssp             THHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHH----HHT
T ss_pred             CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHH----HHH
Confidence            5667777777777652   333333433332 2222111   1122334455555555431     1111222    345


Q ss_pred             HHhhhcCCCH-HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           70 LQPLLEGSDP-ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        70 Lv~lL~s~~~-~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      |++|.+++.- ....+=..++...+..+|.....+++     .|++.--. ++..=..-.+.-|..++...++..-.-+.
T Consensus       222 llPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~-----~llk~WP~-t~s~Kev~FL~el~~il~~~~~~~f~~i~  295 (409)
T PF01603_consen  222 LLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIK-----GLLKHWPK-TNSQKEVLFLNELEEILEVLPPEEFQKIM  295 (409)
T ss_dssp             TGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHH-----HHHHHS-S-S-HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH-----HHHHhCCC-CCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            6666665443 33555666777777777766555432     33333332 34444455667778887766554322223


Q ss_pred             cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC---cHHHHHHhcccC--CCCCccHHHHHHHHHHHHH
Q psy355          149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG---MVEQMCVLIDIE--DALDTEMNEHLLSALASLI  223 (285)
Q Consensus       149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g---~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~  223 (285)
                      ...+..+.++++|++.+|-.+|..++.|     +... .++...   +++.+..-|...  +.=+..++..+..++..+.
T Consensus       296 ~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~  369 (409)
T PF01603_consen  296 VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM  369 (409)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4567788899999999999999876442     2333 233332   556666655432  1116789999999999999


Q ss_pred             hcChHHHhhcc
Q psy355          224 KDSTEAQSLCR  234 (285)
Q Consensus       224 ~~~~~~~~~~~  234 (285)
                      ..+++....|.
T Consensus       370 ~~d~~lf~~~~  380 (409)
T PF01603_consen  370 EMDPKLFDKCA  380 (409)
T ss_dssp             TTSHHHHHHHH
T ss_pred             HhCHHHHHHHH
Confidence            99998888774

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1822|consensus

Probab=80.07  E-value=8.6  Score=42.58  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=81.3

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+..++..|.+++|..|..++.++|.+++--+.   ...-.+....+++-+.+..++-.|.--..|++++-|+.-.....
T Consensus       877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            356677788899999999999999999985332   12223466777777777778888888889999998853322111


Q ss_pred             HHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcC
Q psy355          146 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~  180 (285)
                      =.-..++..+.-+.+++ ++.||+.+..++..++..
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s  989 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDS  989 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence            11235788888888776 569999999888877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
1xqs_A	280	Crystal Structure Of The Hspbp1 Core Domain Complex		3e-28
1xqr_A	296	Crystal Structure Of The Hspbp1 Core Domain Length		5e-25
1k9d_A	679	The 1.7 A Crystal Structure Of Alpha-D-Glucuronidas		2e-04

>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 280

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 132/240 (55%), Gaps = 4/240 (1%)
Query: 43  GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 43  GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 102
Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q 
Sbjct: 103 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 162
Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
           + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E    +  +EH+L AL S
Sbjct: 163 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCS 219
Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFD 281
           L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F   + +  D
Sbjct: 220 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMD 279

>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Length = 296

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 123/231 (53%), Gaps = 4/231 (1%)
Query: 43  GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           GAL+ L+D   + D A DF ++ G  +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 59  GALELLADLCENXDNAADFCQLSGXHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 118
Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL R  Q 
Sbjct: 119 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQ 178
Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
           + +KL +KS FL+  L   + + K  L S G V+Q+  L+  E    +  +EH+L AL S
Sbjct: 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSXGXVQQLVALVRTE---HSPFHEHVLGALCS 235
Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF 272
           L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F
Sbjct: 236 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286

>pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-Glucuronidase, A Family-67 Glycoside Hydrolase From Bacillus Stearothermophilus T-1 Length = 679

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 54  SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD 107
           SI+YA+  +++GGLP   PL    DPE+RW   ET   I Q  P    F+++ D
Sbjct: 235 SINYASP-IEIGGLPTADPL----DPEVRWWWKETAKRIYQYIPDFGGFVVKAD 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-48
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-14
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-13
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-12
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-13
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-05
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-04

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  162 bits (412), Expect = 1e-48
 Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 7/269 (2%)

Query: 18  VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGL-PVLQPLLEG 76
           + V ++         E    +    GAL+ L+D   ++D A DF ++ G+  ++   LE 
Sbjct: 34  LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 93

Query: 77  SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136
               LRWRAA+ +    QN    Q  ++    L  LL  ++ D+  TV+VK+L+A+SCLV
Sbjct: 94  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153

Query: 137 RDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196
           R+ E  L +F++ DGFSVL+R +Q + +KL +KS FL+  L   + + K  L SMGMV+Q
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 256
           +  L+  E +     +EH+L AL SL+ D  +    CR   L L+  L    +    +E 
Sbjct: 214 LVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 257 YHKELEHVNSVLTEVFEEDSLEEFDHQDR 285
           Y +ELE    +L   F        D  DR
Sbjct: 271 YQEELEFCEKLLQTCFSS---PADDSMDR 296

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 32/229 (13%), Positives = 85/229 (37%), Gaps = 9/229 (3%)

Query: 11  DALNSMMVNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYVCSIDYANDFLKMGGLP 68
           +A    ++     +  I++T++   D        G L NLS      +      K GG+P
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH---HREGLLAIFKSGGIP 237

Query: 69  VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 128
            L  +L      + + A  T+ +++ +   ++  +     L  ++  +   +N      +
Sbjct: 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296

Query: 129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 188
              +  L   N+E     +   G   L+  +++   + ++ +   +  + +  +  K  +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEP 237
           +  G ++    L          + ++ L  L +L   +T+ + +  L  
Sbjct: 357 VEAGGMQ---ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 402

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 12/194 (6%)

Query: 33  ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
            +Q     C+  L NLSD              G L  L  LL   D  +   AA  ++++
Sbjct: 372 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426

Query: 93  VQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVR---DNEECLKEFIK 148
             NN  ++  + Q   +  L+ ++    +   +   ++ A+  L     D E        
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 208
             G  V+++ +       +IK+   +             L   G +     L+ +     
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 543

Query: 209 TEMNEHLLSALASL 222
            +            
Sbjct: 544 QDTQRRTSMGGTQQ 557

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 27/192 (14%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 52  VCSIDYAND-FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN 110
           V  I+Y +D  L    +P L  LL   D  +  +AA  V  + +        +     ++
Sbjct: 136 VNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195

Query: 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS 170
            ++ ++++ ++      +   +  L   + E L    K  G   L+  + S  + ++  +
Sbjct: 196 AIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA 254

Query: 171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
              +  L       K  +   G ++    ++ + +  + +        L  L   + E++
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESK 311

Query: 231 SLCR----LEPL 238
            +       + L
Sbjct: 312 LIILASGGPQAL 323

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 29/220 (13%)

Query: 24  LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
           L  ++K L    +       +G + NL+             + G +P L  LL  +  + 
Sbjct: 490 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 82  RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 121
           + R +                I++  T  L++L   I                   +   
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181
             +Q  +   +  L +D +E  +        + L   + S+ E +   +  ++  +  D 
Sbjct: 607 ENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665

Query: 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
            Q  +  LS+ +      L   E     E  +  L   A 
Sbjct: 666 PQDYKKRLSVELTS---SLFRTEPMTWNETGDLGLDIGAQ 702

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 36/210 (17%), Positives = 89/210 (42%), Gaps = 7/210 (3%)

Query: 14  NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP 72
           +    + G+EL ++++ L   +Q +    +  L  ++      +     +  G LP L  
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQ 61

Query: 73  LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 132
           LL   + ++   A   +++I          +I    L  L+  +    N  +  ++L+A+
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120

Query: 133 SCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192
           S +     E ++  I       L++ + S  E+++ ++ + ++ + +  N+ KQ +   G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180

Query: 193 MVEQMCVLIDIEDALDTEMNEHLLSALASL 222
            +E++  L   E+    ++ +    AL  L
Sbjct: 181 ALEKLEQLQSHENE---KIQKEAQEALEKL 207

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 41/256 (16%), Positives = 104/256 (40%), Gaps = 20/256 (7%)

Query: 14  NSMMVNVGAELEKIIKTLKENQD---QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVL 70
            +  ++   ++   +  L  + D     D C  A+  L+D     +     +K G +P L
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSC-WAISYLTDG--PNERIEMVVKKGVVPQL 279

Query: 71  QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY 130
             LL  ++  +   A   + +IV         +I    L +  + + +   T +Q ++ +
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATW 338

Query: 131 AVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLL 189
            +S +    ++ +++ +       L+  +     K   ++ + I    +    +    L+
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398

Query: 190 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFK----LN 245
             G++E +  L+  +   DT++ + +L A++++ +    A+ L   E L++  +    L+
Sbjct: 399 HCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQA---AEKLGETEKLSIMIEECGGLD 452

Query: 246 FIKE--KHAGNEVYHK 259
            I+   +H    VY  
Sbjct: 453 KIEALQRHENESVYKA 468

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 33/213 (15%), Positives = 82/213 (38%), Gaps = 11/213 (5%)

Query: 24  LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
           + K +  L   +    +     AL N++    + +     +  G +P    LL      +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASPHAHI 159

Query: 82  RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL----YAVSCLVR 137
             +A   + +I  +    ++ +I+   ++ LL  +     +T+    L    + +S L R
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219

Query: 138 DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197
           +                L+R +     +++  SC+ I+ L    N+  ++++  G+V Q+
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 198 CVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
             L+      +  +    L A+ +++  + E  
Sbjct: 280 VKLLGAT---ELPIVTPALRAIGNIVTGTDEQT 309

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 30/209 (14%), Positives = 75/209 (35%), Gaps = 6/209 (2%)

Query: 16  MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
           M+V  G  + +++K L           + A+ N+     + +     +  G L V   LL
Sbjct: 269 MVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIV--TGTDEQTQKVIDAGALAVFPSLL 325

Query: 75  EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134
                 ++  A  T+++I          ++    +  L+  +   ++   Q ++ +A++ 
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITN 384

Query: 135 LVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193
                  E +   +       L+  + +K  K++      I+ +     ++ +      M
Sbjct: 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 444

Query: 194 VEQMCVLIDIEDALDTEMNEHLLSALASL 222
           +E+   L  IE     E      ++L  +
Sbjct: 445 IEECGGLDKIEALQRHENESVYKASLNLI 473

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 35/191 (18%), Positives = 82/191 (42%), Gaps = 8/191 (4%)

Query: 37  QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96
             D C  AL  LSD     D     +  G    L  LL  +D ++   A   V +IV  +
Sbjct: 209 LADAC-WALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265

Query: 97  PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLL 156
                 I+    L  LL  +      +++ ++ + +S +   N   ++  I  + F  L+
Sbjct: 266 DIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324

Query: 157 RCIQSKKEKLVIKSCFLIACLCT-DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 215
             +Q+ + +   ++ + I    +  + +  + L+ +G ++ +C L+ +    D+++ +  
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM---DSKIVQVA 381

Query: 216 LSALASLIKDS 226
           L+ L ++++  
Sbjct: 382 LNGLENILRLG 392

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 32/215 (14%), Positives = 87/215 (40%), Gaps = 8/215 (3%)

Query: 16  MMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL 73
           ++   G  + + ++ LK  EN   +      L N++    +       ++ G +P+   L
Sbjct: 59  VISTPGV-VARFVEFLKRKENCTLQFESAWVLTNIAS--GNSLQTRIVIQAGAVPIFIEL 115

Query: 74  LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133
           L     +++ +A   + +I  ++   +++++  + L  LL      +  T+   +++A+S
Sbjct: 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175

Query: 134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193
            L R      +        +VL   +      ++  +C+ ++ L    N   Q ++  G+
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235

Query: 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228
                 L+++    D ++    L A+ +++     
Sbjct: 236 CR---RLVELLMHNDYKVVSPALRAVGNIVTGDDI 267

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 22/176 (12%), Positives = 67/176 (38%), Gaps = 4/176 (2%)

Query: 65  GGLPVLQPLLEGSDPELRWRAAETVADIVQN--NPFSQNFIIQTDFLNLLLTSIEHDSNT 122
                +  ++    PE +  A +    ++    NP     I     +   +  ++   N 
Sbjct: 20  VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79

Query: 123 TVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182
           T+Q +S + ++ +   N    +  I+     + +  + S+ E +  ++ + +  +  D+ 
Sbjct: 80  TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139

Query: 183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPL 238
             +  +L   ++  +  L   ++     M  + + AL++L +  +      ++ P 
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 67.4 bits (164), Expect = 7e-13
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 8/221 (3%)

Query: 16  MMVNVGAELEKIIKTLKE-NQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
            ++   A +E I+                 L NL          +  +    LP L  L+
Sbjct: 210 YVLQCNA-MEPILGLFNSNKPSLIRTATWTLSNLCRG--KKPQPDWSVVSQALPTLAKLI 266

Query: 75  EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134
              D E    A   ++ +      +   +I       L+  + H+S T VQ  +L AV  
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGN 325

Query: 135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 194
           +V  N+   +  I       L   + S KE +  ++C+ I+ +   N +  Q ++   ++
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385

Query: 195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRL 235
             +  L+++    + +  +    A+++      +   + R 
Sbjct: 386 PPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPDIIRY 423

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 31/221 (14%), Positives = 78/221 (35%), Gaps = 7/221 (3%)

Query: 10  LDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP 68
           + A       +  EL ++ + L  ++  ++         +          +  ++ G +P
Sbjct: 75  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVP 133

Query: 69  VLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 127
            L   + E     L+  AA  + +I          ++  D + L +  +    +  V+ +
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQ 192

Query: 128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187
           +++A+  +  D+ +     ++ +    +L    S K  L+  + + ++ LC         
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228
            +    +  +  LI      DTE       A++ L     E
Sbjct: 253 SVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQE 290

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 23/197 (11%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 16  MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
            +++V    +++++ L  E+   +   + A+ N+     +       +  G LP L+ LL
Sbjct: 294 AVIDVRI-PKRLVELLSHESTLVQTPALRAVGNIVT--GNDLQTQVVINAGVLPALRLLL 350

Query: 75  EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134
                 ++  A  T+++I   N      +I  + +  L+  +E       + ++ +A+S 
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAISN 409

Query: 135 LVR---DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 191
                    + ++  + +     L   ++    +++  +   +  +       K+     
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARG 467

Query: 192 GMVEQMCVLIDIEDALD 208
             + +    I+    ++
Sbjct: 468 LNINENADFIEKAGGME 484

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 32/220 (14%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 14  NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP 72
           +    + G+EL ++ + L  ++  ++         +       +     +  G LP L  
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQ 61

Query: 73  LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 132
           LL   + ++   A   +++I          +I    L  L+  +    N  +  ++L+A+
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120

Query: 133 SCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192
           S +     E ++  I       L++ + S  E+++ ++ + ++ + +  N+  Q ++  G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180

Query: 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
            +  +  L+      + ++ +  L AL+++     E +  
Sbjct: 181 ALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQA 217

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 37  QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96
            ++    AL N++      +     +  G LP L  LL   + ++   A   +++I    
Sbjct: 155 LQEAL-WALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211

Query: 97  PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136
              +  + +   L  L     H  N  +Q ++  A+  L 
Sbjct: 212 NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 250

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 44  ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
           A+ NL +Y       +  L    +P L  LL   D  +  +AA  V  + +        +
Sbjct: 1   AVVNLINY-----QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55

Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK 163
                ++ ++ ++++ ++      +   +  L   + E L    K  G   L++ + S  
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV 114

Query: 164 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223
           + ++  +   +  L       K  +   G ++    ++ + +  + +        L  L 
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILA 171

Query: 224 KDSTEAQSLCR----LEPL 238
             + E++ +       + L
Sbjct: 172 YGNQESKLIILASGGPQAL 190

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 12/206 (5%)

Query: 33  ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
            +Q     C+  L NLSD              G L  L  LL   D  +   AA  ++++
Sbjct: 239 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

Query: 93  VQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVRDN---EECLKEFIK 148
             NN  ++  + Q   +  L+ ++    +   +   ++ A+  L   +   E        
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353

Query: 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 208
             G  V+++ +       +IK+   +             L   G +     L+ +     
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 410

Query: 209 TEMNEHLLSALASLIKDSTEAQSLCR 234
            +                        
Sbjct: 411 QDTQRRTSMGGTQQQFVEGVRMEEIV 436

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 17  MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE 75
           +   G  +  ++K L           I  L NL   +            GGL  +  LL 
Sbjct: 97  IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 153

Query: 76  GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135
            ++ +      + +  +   N  S+  I+ +     L+  +   +   +   +   +  L
Sbjct: 154 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

Query: 136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195
                      ++  G   L   +    ++LV    + +  L     + + +    G++ 
Sbjct: 214 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 269

Query: 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
               L+ +  + D  +       L++L  ++ + +
Sbjct: 270 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 26/189 (13%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 55  IDYAND-FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113
           I+Y +D  L    +P L  LL   D  +  +AA  V  + +        +     ++ ++
Sbjct: 3   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62

Query: 114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 173
            ++++ ++      +   +  L   + E L    K  G   L++ + S  + ++  +   
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 174 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233
           +  L       K  +   G ++    ++ + +  + +        L  L   + E++ + 
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 234 R----LEPL 238
                 + L
Sbjct: 179 LASGGPQAL 187

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 9/178 (5%)

Query: 33  ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
            +Q     C+  L NLSD              G L  L  LL   D  +   AA  ++++
Sbjct: 236 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 93  VQNNPFSQNFIIQTDFL-NLLLTSIEHDSNTTVQVKSLYAVSCLV---RDNEECLKEFIK 148
             NN  ++  + Q   +  L+ T +       +   ++ A+  L    ++ E        
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA 206
             G  V+++ +       +IK+   +             L   G + ++  L+     
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 17  MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE 75
           +   G  +  ++K L           I  L NL   +            GGL  +  LL 
Sbjct: 94  IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 150

Query: 76  GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135
            ++ +      + +  +   N  S+  I+ +     L+  +   +   +   +   +  L
Sbjct: 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210

Query: 136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195
                      ++  G   L   +    ++LV    + +  L     + + +    G++ 
Sbjct: 211 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 266

Query: 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
               L+ +  + D  +       L++L  ++ + +
Sbjct: 267 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 29/219 (13%)

Query: 24  LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
           L  ++K L    +       +G + NL+             + G +P L  LL  +  + 
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 410

Query: 82  RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 121
           + R +                I++  T  L++L   +                   +   
Sbjct: 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 470

Query: 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181
             +Q  +   +  L +D +E  +        + L   + S+ E +   +  ++  +  D 
Sbjct: 471 ENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529

Query: 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 220
            Q  +  LS+ +      L   E     E  +  L   A
Sbjct: 530 PQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGA 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 39/278 (14%), Positives = 85/278 (30%), Gaps = 63/278 (22%)

Query: 38  KDICIGALDNLSDYVCSID--YANDFLKMGGLPVLQP-----LLEGSDPELRWRAAETVA 90
           KDI          +V + D     D  K     +L       ++   D          + 
Sbjct: 19  KDI---LSVFEDAFVDNFDCKDVQDMPK----SILSKEEIDHIIMSKDAVSGTL---RLF 68

Query: 91  DIVQNNPFS--QNFI---IQTDFLNLLLTSIEHDSNTTVQVKSLY--AVSCLVRDNEECL 143
             + +      Q F+   ++ ++   L++ I+ +      +  +Y      L  DN+   
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 144 KEFIKR-DGFSVLLRCIQS-KKEKLVI--------KSCFLIACLCTDNNQVK----QVL- 188
           K  + R   +  L + +   +  K V+        K+  +   +C           ++  
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFW 186

Query: 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKL-NFI 247
           L++                  EM + LL  +       ++  S  +L   +++ +L   +
Sbjct: 187 LNLKNCN--------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 248 KEKHAGNEVYHKELEHVNS--VLTEVFEEDSLEEFDHQ 283
           K K            + N   VL  V    +   F+  
Sbjct: 239 KSK-----------PYENCLLVLLNVQNAKAWNAFNLS 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 6e-09
 Identities = 44/284 (15%), Positives = 83/284 (29%), Gaps = 85/284 (29%)

Query: 18  VNVGAELEKIIKTLKENQDQKDICI------G----ALDNLSDYVCSIDYANDF----LK 63
           V+      K+ + L E +  K++ I      G    ALD    Y   +    DF    L 
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLN 188

Query: 64  MGG-------LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN--------FIIQTDF 108
           +         L +LQ LL   DP    R+     D   N     +         +    +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 109 LNLLLTSIEHD-SNTTVQVKSLYAVSC--LV--RDN----------------EECLKEFI 147
            N LL  +  +  N      + + +SC  L+  R                  +       
Sbjct: 244 ENCLL--VLLNVQNAKA-WNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 148 KRDGFSVLLRCIQSKKEKL----------VIKSCFLIACLCTDN----NQVKQVLLS-MG 192
             +  S+LL+ +  + + L           +    +IA    D     +  K V    + 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLT 356

Query: 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST-EAQSLCRL 235
            + +  +     + L+      +   L+     +      L  +
Sbjct: 357 TIIESSL-----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 8/199 (4%)

Query: 33  ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
           E+ + +++    L+ +       +     ++ GG+  L  +      + +  A + +A I
Sbjct: 507 ESHNSQELIARVLNAVCGLK---ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563

Query: 93  V--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150
               N   S +     D +  LL  ++ D       +SL A++ L   NE   +  IK  
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623

Query: 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE 210
           G S +   +      L   +   +  L    + +K    +   V+ + +L + ED    E
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE---E 680

Query: 211 MNEHLLSALASLIKDSTEA 229
                  ALA +   S + 
Sbjct: 681 TATACAGALAIITSVSVKC 699

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 20/113 (17%), Positives = 38/113 (33%)

Query: 65  GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 124
             +  L  L E  D E     A  +A I   +      I+       +L ++  + +  V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177
           Q + +  +  ++   EE  K+  + D   +L    Q   +           CL
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 28/237 (11%), Positives = 81/237 (34%), Gaps = 21/237 (8%)

Query: 21  GAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDP 79
           G  + K ++ L  +++  + I    + +               ++GG+  L  LL   + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQ 58

Query: 80  ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139
            ++  AA  + ++V  +  ++    + + +   ++ +    N  +Q +    +  L   +
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 140 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 183
           E  LKE +  D   VL   +                +    ++   +   +  L + +  
Sbjct: 119 E--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 184 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNL 240
            + +    G+++ +   +    A     ++ + + +  L   S    +        L
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 12/177 (6%)

Query: 65  GGLPVLQPLLEGSDPELRWRAAETVADI-VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTT 123
           G +  L   L+    +L+   A  + ++  + +  S+  + +   +  L+         +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 186

Query: 124 VQVKSLYAVSCLVRDNEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 177
                L A+  L     E   +    DG        L    Q+    ++     ++  + 
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

Query: 178 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
                N   +Q+L     ++    L+    +    +  +    L +L   + + Q  
Sbjct: 247 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 22/177 (12%), Positives = 55/177 (31%), Gaps = 12/177 (6%)

Query: 65  GGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT 123
           G +  L   L+    +L+   A  + ++    +  S+  + +   +  L+         +
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

Query: 124 VQVKSLYAVSCLVRDNEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 177
                L A+  L     E   +    DG        L    Q+    ++     ++  + 
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 178 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
                N   +Q+L     ++    L+    +    +  +    L +L   + + Q  
Sbjct: 363 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 25/228 (10%)

Query: 20  VGAE-LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAND------------------ 60
           VG + +E +I  L+ ++   +I   ALD L + + + +                      
Sbjct: 57  VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116

Query: 61  FLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH 118
           F+K    + +L  LLE  D  +RW   + +  +++      Q  I+ +      L  +  
Sbjct: 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176

Query: 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCF-LI 174
           DS   ++   +  +  L R N    K     + F  LL  I  +      +V++ C  L+
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236

Query: 175 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 222
             L  +NN  +        +++M    ++ D       + + +    L
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 13/142 (9%)

Query: 33  ENQDQKDICIGALDNLS--DYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVA 90
           +     +   GA+ NL    +       +   +   L  +  LL      +   A+  + 
Sbjct: 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR 380

Query: 91  DIVQNNPFSQN-FIIQTDFLNLLLTSIEHDSNTTVQVKS-------LYAVSCLVRDNEEC 142
           ++  +   ++N  +I    +  L+ ++      +    S       L  ++ ++ +N E 
Sbjct: 381 NLAVD---ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 143 LKEFIKRDGFSVLLRCIQSKKE 164
            K+  +  G   L+   +S   
Sbjct: 438 AKKLRETQGIEKLVLINKSGNR 459

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 16/133 (12%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 65  GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 124
             LP +  +L      ++  AA  +  +   N   +  + +   + +L+  ++H     V
Sbjct: 48  PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEV 106

Query: 125 QVKSLYAVSCL----VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180
            +    A   L       +++        DG   L+R ++  ++  + +         + 
Sbjct: 107 HL---GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163

Query: 181 NNQVKQVLLSMGM 193
           ++ +K  ++   +
Sbjct: 164 HDSIKMEIVDHAL 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.98
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.93
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.92
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.91
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.9
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.9
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.89
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.88
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.88
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.87
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.86
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.86
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.84
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.84
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.82
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.81
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.8
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.78
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.76
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.74
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.66
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.65
3grl_A	651	General vesicular transport factor P115; vesicle t	99.54
3grl_A	651	General vesicular transport factor P115; vesicle t	99.44
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.36
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.22
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.17
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.15
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.03
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.88
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.85
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.85
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.81
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.8
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.77
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.76
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.66
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.6
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.59
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.59
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.55
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.53
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.51
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.51
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.49
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.48
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.42
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.38
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.38
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.27
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	98.23
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.22
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.19
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.15
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.01
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.95
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.93
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.9
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.76
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.63
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.59
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.54
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.49
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.4
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	97.28
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.16
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	97.1
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	97.03
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.98
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.95
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.89
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.85
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.55
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.53
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.5
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.45
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.41
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.4
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.31
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	96.25
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.23
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.15
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.94
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.88
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	95.73
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.55
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.5
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.48
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.46
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.41
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	95.36
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	95.0
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.97
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	94.9
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	94.88
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.8
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.76
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	94.67
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	94.35
3pst_A	425	Protein DOA1; protein degradation, CDC48, ubiquiti	94.34
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.32
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.29
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	94.24
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.23
3gae_A	253	Protein DOA1; UFD3, CDC48, armadillo repeat, nucle	94.23
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.14
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.99
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	93.79
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	93.61
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	93.59
3l3f_X	362	Protein DOA1, DOA1/UFD3; armadillo-like repeat str	93.55
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.28
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	93.01
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	92.62
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.54
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	91.44
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	91.01
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.53
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	90.01
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	90.0
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	89.79
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	87.38
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	84.48
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.19
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	83.88
3hjl_A	329	Flagellar motor switch protein FLIG; armadillo rep	83.69
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	83.14
3rru_A	152	TOM1L1 protein; structural genomics, PSI-biology,	82.71
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.31
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	82.09

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=100.00  E-value=1.9e-55  Score=394.67  Aligned_cols=273  Identities=32%  Similarity=0.473  Sum_probs=245.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccC----------CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hh
Q psy355            6 RGFLLDALNSMMVNVGAELEKIIKTLKENQ----------DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LL   74 (285)
Q Consensus         6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~----------~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL   74 (285)
                      ..||++||... +|++++||+++.+|.++.          .+.+.++.|++.|.++++++||+++|++.||+|+|+. +|
T Consensus        13 ~~~~~~~~~~~-~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL   91 (296)
T 1xqr_A           13 LVPRGSHMRGQ-RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL   91 (296)
T ss_dssp             -------CCSC-HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence            47999999874 899999999999999973          3357899999999999999999999999999999999 99


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355           75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV  154 (285)
Q Consensus        75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~  154 (285)
                      +++++.||.+|+|+||++++|||.+|+.+++.|++|+|+++|+++++..++++|+|||||+++|++++.+.|++.||+++
T Consensus        92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~  171 (296)
T 1xqr_A           92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV  171 (296)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999997667899999999999999999999999999999999


Q ss_pred             HHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355          155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR  234 (285)
Q Consensus       155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~  234 (285)
                      |+.+|++++.++|++|+|+|++|+.++++.++.+++.|++++|+.+|.++   +++++++++.+|.+|+..+++.+..|+
T Consensus       172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~~~~~~~~~~~  248 (296)
T 1xqr_A          172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECR  248 (296)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999   999999999999999999998889998


Q ss_pred             cCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCchhhhc
Q psy355          235 LEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFDH  282 (285)
Q Consensus       235 ~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~~~~~  282 (285)
                      .+...|..+|+++++.+|.|++|+++|+||.+|+++||+++++++|||
T Consensus       249 ~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~~~~~~~~  296 (296)
T 1xqr_A          249 EPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMDR  296 (296)
T ss_dssp             CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC---------
T ss_pred             ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence            876678899999999999877799999999999999999999999997

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.98  E-value=1.6e-30  Score=250.02  Aligned_cols=247  Identities=14%  Similarity=0.194  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355           20 VGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        20 ~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn   96 (285)
                      ....++.+++.|..--  .+++.+..|++.|.+++...+ +...++..|++|.|+.+|.++++.++.+|+++|||+++++
T Consensus       245 ~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  324 (529)
T 3tpo_A          245 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT  324 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence            3556666777665433  345788899999999998754 4556788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355           97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC  176 (285)
Q Consensus        97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~  176 (285)
                      +..+..+++.|++++|+.+|.+ +++.+++.|+|+|+||+.+++.....+++.|++++|+.+|.+++.++|..|+|+|+|
T Consensus       325 ~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n  403 (529)
T 3tpo_A          325 DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN  403 (529)
T ss_dssp             HHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999997 678999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH---------HHhhcccCcccHHHHHHH
Q psy355          177 LCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE---------AQSLCRLEPLNLKFKLNF  246 (285)
Q Consensus       177 L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~---------~~~~~~~~~~~l~~~l~~  246 (285)
                      ++.+ +++.+.++++.|++++|+.+|.++   |++++..++.+|.+|++.++.         .+++|    .++     +
T Consensus       404 l~~~~~~~~~~~l~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~----ggl-----~  471 (529)
T 3tpo_A          404 YTSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC----GGL-----D  471 (529)
T ss_dssp             HHHHSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT----TCH-----H
T ss_pred             HHcCCCHHHHHHHHHCcCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHC----CcH-----H
Confidence            9875 677889999999999999999999   999999999999999865431         12222    122     3


Q ss_pred             HHHHccChHhhHHHHHHHHHHHHHhcCCCCchhh
Q psy355          247 IKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEF  280 (285)
Q Consensus       247 ~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~~~  280 (285)
                      .++.|| +|+|.++|++|.+||++||+++++|+.
T Consensus       472 ~ie~Lq-~~~n~~i~~~A~~iie~yf~~~~~~~~  504 (529)
T 3tpo_A          472 KIEALQ-RHENESVYKASLNLIEKYFSVEEEEDQ  504 (529)
T ss_dssp             HHTGGG-GCSSHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHCCCcccccc
Confidence            566888 569999999999999999997765543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=2.7e-30  Score=247.49  Aligned_cols=247  Identities=14%  Similarity=0.187  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355           20 VGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        20 ~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn   96 (285)
                      +...++.+++.|..--  .+.+.+..|++.|.++++..+ +...+...|+++.|+.+|.++++.++.+|+++|||+++++
T Consensus       226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~  305 (510)
T 3ul1_B          226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT  305 (510)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence            3555666766665433  345788899999999998754 4456788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355           97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC  176 (285)
Q Consensus        97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~  176 (285)
                      +..++.+++.|++|.|+.+|++ ++..+|+.|+|+|+||+.+++...+.+++.|+++.|+.+|++++.++|+.|+|+|+|
T Consensus       306 ~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~N  384 (510)
T 3ul1_B          306 DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN  384 (510)
T ss_dssp             HHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999997 678999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH---------HhhcccCcccHHHHHHH
Q psy355          177 LCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA---------QSLCRLEPLNLKFKLNF  246 (285)
Q Consensus       177 L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~---------~~~~~~~~~~l~~~l~~  246 (285)
                      ++.+ +++.+.++++.|++++|+.+|.++   |++++..++.+|.+|++.+++.         +++|     +..    +
T Consensus       385 l~~~~~~~~~~~L~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~-----ggl----~  452 (510)
T 3ul1_B          385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC-----GGL----D  452 (510)
T ss_dssp             HHHHCCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT-----THH----H
T ss_pred             HHccCCHHHHHHHHHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHc-----CcH----H
Confidence            9875 677889999999999999999999   9999999999999999755321         1222     111    3


Q ss_pred             HHHHccChHhhHHHHHHHHHHHHHhcCCCCchhh
Q psy355          247 IKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEF  280 (285)
Q Consensus       247 ~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~~~  280 (285)
                      .++.|| .|+|.++|++|.+||++||+++++|+.
T Consensus       453 ~ie~Lq-~~~n~~i~~~A~~iie~yf~~~~~~~~  485 (510)
T 3ul1_B          453 KIEALQ-RHENESVYKASLNLIEKYFSVEEEEDQ  485 (510)
T ss_dssp             HHHHGG-GCSSHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHCCCcccccc
Confidence            566898 569999999999999999998766543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=8.6e-27  Score=223.03  Aligned_cols=240  Identities=16%  Similarity=0.215  Sum_probs=202.6

Q ss_pred             CHHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           37 QKDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +.+.+..|+..|.+++...+. ...+...|+++.|+.+|.++++.++..|+++||+++.+++..++.+++.|++|.|+.+
T Consensus       257 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  336 (528)
T 4b8j_A          257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL  336 (528)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence            357788999999999977554 4578899999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMV  194 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v  194 (285)
                      |.+..++.+++.|+|+|+|++.+++.....+++.|+++.|+.+|.+++.+++..|+|+|++++.. ++....++++.|++
T Consensus       337 L~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i  416 (528)
T 4b8j_A          337 LTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI  416 (528)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred             HcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence            99743789999999999999999998888999999999999999999999999999999999987 68899999999999


Q ss_pred             HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH-----HHHHHccChHhhHHHHHHHHHHHH
Q psy355          195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEHVNSVLT  269 (285)
Q Consensus       195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~l~~~~e~~~~~~~~~~il~  269 (285)
                      ++|+.+|..+   ++.++..++.+|.+|+..++.....+..+...+...++     +.+..++ ++++.++++++..|++
T Consensus       417 ~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~~a~~il~  492 (528)
T 4b8j_A          417 KPLCDLLICP---DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYEKAVKILE  492 (528)
T ss_dssp             HHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence            9999999998   99999999999999998776533222111112223333     3456777 5689999999999999


Q ss_pred             HhcCCCCchhh
Q psy355          270 EVFEEDSLEEF  280 (285)
Q Consensus       270 ~~f~~~~~~~~  280 (285)
                      +||+.++++++
T Consensus       493 ~~~~~e~~~~~  503 (528)
T 4b8j_A          493 AYWMDEEDDTM  503 (528)
T ss_dssp             HHCC-------
T ss_pred             HHCCCcccccc
Confidence            99998776654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.95  E-value=5.9e-26  Score=191.44  Aligned_cols=184  Identities=18%  Similarity=0.291  Sum_probs=173.7

Q ss_pred             CHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           37 QKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +.+.+..|+..|..++ .+.++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..++.+++.|++|.|+.+
T Consensus        25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  104 (210)
T 4db6_A           25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  104 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence            4578899999999998 456777889999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      |++ +++.++..|+|+|++++.+++...+.+++.|+++.|+++|++++.+++..|+|+|.+++..++..+..+++.|+++
T Consensus       105 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~  183 (210)
T 4db6_A          105 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE  183 (210)
T ss_dssp             TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred             HcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence            997 5789999999999999999999888999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          196 QMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      .|+.++.++   +..+++.|+.+|.+|+.
T Consensus       184 ~L~~ll~~~---~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          184 KLEQLQSHE---NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHGGGCS---CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCC---CHHHHHHHHHHHHHHhc
Confidence            999999998   99999999999999864

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.6e-25  Score=191.36  Aligned_cols=244  Identities=18%  Similarity=0.270  Sum_probs=207.4

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      +...++.|.+++  .+.+..|+..|..++...+ +...+.+.|+++.|+++|+++++.+|..|+++|++++.+++..+..
T Consensus         4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            556666776654  6789999999999987654 8888999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      +++.|++|.|+.+|++ +++.++..|+|+|++++.+++.....+.+.|+++.|+++|++++..++..|+++|++|+...+
T Consensus        82 ~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999996 678999999999999999899999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHH
Q psy355          183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELE  262 (285)
Q Consensus       183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~  262 (285)
                      ..++.+++.|+++.|+.+|.++   ++.++..++.+|.+++..++.........  +.   +....+.++.  .+.+..+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~---i~~L~~ll~~--~~~~v~~  230 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPTSAIKAIVDA--GG---VEVLQKLLTS--TDSEVQK  230 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSBHHHHHHHHHT--TH---HHHHHHGGGC--SCHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CC---HHHHHHHHCC--CcHHHHH
Confidence            8889999999999999999988   99999999999999998777544333222  22   2222334442  4557778


Q ss_pred             HHHHHHHHhcCCCCchhh
Q psy355          263 HVNSVLTEVFEEDSLEEF  280 (285)
Q Consensus       263 ~~~~il~~~f~~~~~~~~  280 (285)
                      .+..+|.++.........
T Consensus       231 ~a~~~L~~l~~~~~~~~~  248 (252)
T 4hxt_A          231 EAQRALENIKSGGWLEHH  248 (252)
T ss_dssp             HHHHHHHHHHHTCBCCC-
T ss_pred             HHHHHHHHHHcCCCcccc
Confidence            888888877765554433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=3.7e-25  Score=206.20  Aligned_cols=234  Identities=15%  Similarity=0.196  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      .+.+..+++.|.+++... ++...+...|+++.|+.+|.++++.+|..|+++|++++.+++...+.+++.|++|.|+.+|
T Consensus       206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  285 (450)
T 2jdq_A          206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL  285 (450)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence            567888999999998764 5677788999999999999999999999999999999999999888999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHH
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVE  195 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~  195 (285)
                      .+ ++..+|..|+|+|++++.+++...+.+++.|+++.|+.+|+++++++|..|+|+|++++.+ .+...+.+++.|+++
T Consensus       286 ~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~  364 (450)
T 2jdq_A          286 SS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK  364 (450)
T ss_dssp             TC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred             cC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence            97 6789999999999999999999888899999999999999999999999999999999976 677888899999999


Q ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhh---cccCcccHHHHHH-----HHHHHccChHhhHHHHHHHHHH
Q psy355          196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL---CRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEHVNSV  267 (285)
Q Consensus       196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~---~~~~~~~l~~~l~-----~~~~~l~~~~e~~~~~~~~~~i  267 (285)
                      .|+.+|..+   +.++++.++.+|.+++..++.....   +..+   +...+.     +++..++. +++.++++++..+
T Consensus       365 ~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~---~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~  437 (450)
T 2jdq_A          365 PLCDLLTVM---DSKIVQVALNGLENILRLGEQEAKRNGTGINP---YCALIEEAYGLDKIEFLQS-HENQEIYQKAFDL  437 (450)
T ss_dssp             HHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH---HHHHHHHHHCHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhccccchhH---HHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHH
Confidence            999999998   9999999999999999877643211   1111   222332     34667774 5788999999999


Q ss_pred             HHHhcCCCCchh
Q psy355          268 LTEVFEEDSLEE  279 (285)
Q Consensus       268 l~~~f~~~~~~~  279 (285)
                      +.+||+++++++
T Consensus       438 l~~~~~~~~~~~  449 (450)
T 2jdq_A          438 IEHYFGTEDEDS  449 (450)
T ss_dssp             HHHHHCCC----
T ss_pred             HHHHCCcccccC
Confidence            999998777654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=1.6e-24  Score=207.59  Aligned_cols=235  Identities=16%  Similarity=0.191  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      .+.+..|++.|.+++... +....+...|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|++|.|+.+|
T Consensus       271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  350 (530)
T 1wa5_B          271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL  350 (530)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence            577889999999999764 4566788899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-Cc--hHHHHHHHCCc
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NN--QVKQVLLSMGM  193 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~--~~~~~l~~~g~  193 (285)
                      .+ ++..+|..|+|+|++++.+++...+.+++.|+++.|+.+|.+++.++|..|+|+|++++.. .+  .....+++.|+
T Consensus       351 ~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~  429 (530)
T 1wa5_B          351 SS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC  429 (530)
T ss_dssp             TC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred             cC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence            97 5789999999999999999998888899999999999999999999999999999999985 44  78889999999


Q ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhh-cccCcccHHHHHH-----HHHHHccChHhhHHHHHHHHHH
Q psy355          194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL-CRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEHVNSV  267 (285)
Q Consensus       194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~-~~~~~~~l~~~l~-----~~~~~l~~~~e~~~~~~~~~~i  267 (285)
                      ++.|+.+|..+   ++.+++.++.+|.+++..++..... +.... .+...+.     +.+..++ ++.+.++++++..+
T Consensus       430 l~~L~~ll~~~---~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~L~~L~-~~~~~~v~~~a~~i  504 (530)
T 1wa5_B          430 IKPLCDLLEIA---DNRIIEVTLDALENILKMGEADKEARGLNIN-ENADFIEKAGGMEKIFNCQ-QNENDKIYEKAYKI  504 (530)
T ss_dssp             HHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-HHHHHHHHTTHHHHHHGGG-GCSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHHHHHhhhhhhhccccccc-HHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHH
Confidence            99999999998   9999999999999999877643221 10000 1112222     3556777 45889999999999


Q ss_pred             HHHhcCCCCch
Q psy355          268 LTEVFEEDSLE  278 (285)
Q Consensus       268 l~~~f~~~~~~  278 (285)
                      +++||..+++|
T Consensus       505 l~~~~~~~~~~  515 (530)
T 1wa5_B          505 IETYFGEEEDA  515 (530)
T ss_dssp             HHHHSSSCC--
T ss_pred             HHHHCCccccc
Confidence            99999987764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=1.1e-24  Score=188.41  Aligned_cols=235  Identities=15%  Similarity=0.252  Sum_probs=195.1

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355           25 EKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  103 (285)
Q Consensus        25 k~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v  103 (285)
                      ...++.|...+  .+.+..|+..|..++ ...++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+
T Consensus        15 ~~~~~~L~s~~--~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (252)
T 4db8_A           15 PQMTQQLNSDD--MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (252)
T ss_dssp             HHHHHHHHSSC--SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHcCCC--HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            34444555443  367888888886544 344667789999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ  183 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~  183 (285)
                      ++.|++|.|+.+|++ +++.++..|+|+|++++.+.+.....+.+.|+++.|+++|++++..++..|+|+|++|+.+++.
T Consensus        93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999997 6789999999999999998887768899999999999999999999999999999999999889


Q ss_pred             HHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHH
Q psy355          184 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEH  263 (285)
Q Consensus       184 ~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~  263 (285)
                      .+..+++.|+++.|+.+|.++   ++.+++.++.+|.+++..++.........  +....|   .+.++  +.+.+..+.
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L---~~ll~--~~~~~v~~~  241 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQAVKEA--GALEKL---EQLQS--HENEKIQKE  241 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHH---HTTTT--CSSSHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHH---HHHhC--CCCHHHHHH
Confidence            999999999999999999998   99999999999999998877544322221  121222   22333  245677788


Q ss_pred             HHHHHHHhc
Q psy355          264 VNSVLTEVF  272 (285)
Q Consensus       264 ~~~il~~~f  272 (285)
                      +..+|..++
T Consensus       242 A~~~L~~l~  250 (252)
T 4db8_A          242 AQEALEKLQ  250 (252)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHh
Confidence            888877664

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=7e-24  Score=182.39  Aligned_cols=198  Identities=19%  Similarity=0.302  Sum_probs=181.9

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      +...++.|.++  +.+.+..|+..|..++.. .++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus        46 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  123 (252)
T 4hxt_A           46 VEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA  123 (252)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            44445555543  367899999999999887 678888999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      +++.|++|.|++++.+ +++.++..|+++|++++.+++...+.+++.|+++.|+.+|.+++..++..|+++|++++.+++
T Consensus       124 ~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  202 (252)
T 4hxt_A          124 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT  202 (252)
T ss_dssp             HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred             HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999996 678999999999999999998888899999999999999999999999999999999999899


Q ss_pred             hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      ..++.+++.|+++.|+.++.++   ++.+++.|+.+|.+|....+
T Consensus       203 ~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          203 SAIKAIVDAGGVEVLQKLLTST---DSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHCCCHHHHHHHHCCC---cHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999998   99999999999999998775

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=5.6e-24  Score=179.26  Aligned_cols=201  Identities=15%  Similarity=0.235  Sum_probs=171.8

Q ss_pred             HHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355           61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE  140 (285)
Q Consensus        61 ~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~  140 (285)
                      +..-|+.++|+.+|+++++.+|..|+++|++++.+++..++.+++.|++|.|+++|.+ +++.++..|+|+|++++.+++
T Consensus         8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A            8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred             ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence            4456889999999999999999999999999999999999999999999999999997 578999999999999999999


Q ss_pred             HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355          141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  220 (285)
Q Consensus       141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~  220 (285)
                      .....+++.||++.|+.+|++++..++..|+|+|++++.+++..++.+++.|+++.|+.+|.++   +..+++.++.+|.
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~  163 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALS  163 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998   9999999999999


Q ss_pred             HHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhc
Q psy355          221 SLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF  272 (285)
Q Consensus       221 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f  272 (285)
                      +++..++.........  +..+.|   .+.+.  +++.+..+.+...|..+-
T Consensus       164 ~l~~~~~~~~~~~~~~--g~i~~L---~~ll~--~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          164 NIASGGNEQKQAVKEA--GALEKL---EQLQS--HENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHTSCHHHHHHHHHT--THHHHH---HHGGG--CSCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCcHHHHHHHHC--CCHHHH---HHHHh--CCCHHHHHHHHHHHHHHh
Confidence            9999877544333222  222222   22333  356778888888887664

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=2.8e-24  Score=185.88  Aligned_cols=192  Identities=19%  Similarity=0.300  Sum_probs=175.5

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ  105 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~  105 (285)
                      .+..|.+++  .+.+..|+..|..++. +.++...+.+.||++.|+.+|+++++.+|..|+++|++++.+.+..+..+++
T Consensus        59 L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  136 (252)
T 4db8_A           59 LVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID  136 (252)
T ss_dssp             HHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence            344444433  6789999999999987 5678888999999999999999999999999999999999998877688999


Q ss_pred             cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355          106 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK  185 (285)
Q Consensus       106 ~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~  185 (285)
                      .|++|.|+++|.+ ++..++..|+|+|++++.+++.....+++.|+++.|+++|++++..++..|+++|++++.+++..+
T Consensus       137 ~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  215 (252)
T 4db8_A          137 AGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK  215 (252)
T ss_dssp             TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999996 678999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      ..+++.|+++.|+.++.++   ++++++.|+.+|.+|+.
T Consensus       216 ~~~~~~g~i~~L~~ll~~~---~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          216 QAVKEAGALEKLEQLQSHE---NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHTTHHHHHHTTTTCS---SSHHHHTHHHHHHTTC-
T ss_pred             HHHHHCCcHHHHHHHhCCC---CHHHHHHHHHHHHHHhc
Confidence            9999999999999999998   99999999999998864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.93  E-value=4.6e-24  Score=195.46  Aligned_cols=192  Identities=15%  Similarity=0.154  Sum_probs=173.2

Q ss_pred             CHHHHHHHHHHHHHhhcC--cchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHH
Q psy355           37 QKDICIGALDNLSDYVCS--IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLL  112 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~--~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L  112 (285)
                      +.+.+..|.+.|..+...  .++...+.+.||+|+|+++ +.+++++++..|+++|+|++..++..+..+. ..|++|+|
T Consensus       140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L  219 (354)
T 3nmw_A          140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL  219 (354)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH
Confidence            457888999999999864  4678889999999999996 5778999999999999999987877777777 79999999


Q ss_pred             HHhhccCCCH---HHHHHHHHHHHHHhh---CChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355          113 LTSIEHDSNT---TVQVKSLYAVSCLVR---DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ  186 (285)
Q Consensus       113 ~~LL~~~~~~---~v~~~a~~ALs~l~r---~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~  186 (285)
                      +++|.+..+.   .+++.|+|+|+|++.   +++...+.+++.||++.|+.+|++++.++++.|+|+|++|+.++++.++
T Consensus       220 v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~  299 (354)
T 3nmw_A          220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE  299 (354)
T ss_dssp             HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999874332   599999999999997   7888999999999999999999999999999999999999988899999


Q ss_pred             HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      .+++.|++++|+.+|.++   +..+++.|+.+|.+|+...|..++
T Consensus       300 ~i~~~G~i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          300 ALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHTTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            999999999999999998   999999999999999999886554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.92  E-value=5.3e-24  Score=200.90  Aligned_cols=191  Identities=15%  Similarity=0.154  Sum_probs=171.8

Q ss_pred             CHHHHHHHHHHHHHhhcC--cchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHH
Q psy355           37 QKDICIGALDNLSDYVCS--IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLL  112 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~--~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L  112 (285)
                      +++.+..|.+.|.++...  .++...+.+.||+|+|+.+ +.++++.++..|+.+|+|++.+++..+..+. ..|++|+|
T Consensus       256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L  335 (458)
T 3nmz_A          256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL  335 (458)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence            467899999999999863  4677889999999999996 5678999999999999999996777777777 79999999


Q ss_pred             HHhhccCCCH---HHHHHHHHHHHHHhh---CChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355          113 LTSIEHDSNT---TVQVKSLYAVSCLVR---DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ  186 (285)
Q Consensus       113 ~~LL~~~~~~---~v~~~a~~ALs~l~r---~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~  186 (285)
                      +++|.+..+.   .+++.|+|+|+|++.   +++.+.+.+++.||++.|+.+|++++.++++.|+|+|++|+.++++.+.
T Consensus       336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~  415 (458)
T 3nmz_A          336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE  415 (458)
T ss_dssp             HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999974432   599999999999997   7899999999999999999999999999999999999999988899999


Q ss_pred             HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      .+++.|++++|+.+|.++   +..+++.|+.+|.+|+..+|..+
T Consensus       416 ~i~~~G~I~~Lv~LL~s~---~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          416 ALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HHHHHTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHhhh
Confidence            999999999999999998   99999999999999999887544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.91  E-value=1.7e-22  Score=185.09  Aligned_cols=227  Identities=10%  Similarity=0.050  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHHhhcCcc-hHHHHHHcCC-HHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHH
Q psy355           38 KDICIGALDNLSDYVCSID-YANDFLKMGG-LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLT  114 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~d-na~~~~~~Gg-~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~  114 (285)
                      .+.+..|.+.|..++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|+|++.+ ++.+++.+++.|++|+|++
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4568899999999987654 5555667777 99999999999999999999999999986 7889999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcH----HHHHHHHHHHHHHhc---CCchHHH
Q psy355          115 SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCT---DNNQVKQ  186 (285)
Q Consensus       115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~----~v~~ka~~~l~~L~~---~~~~~~~  186 (285)
                      +|.++.+..+++.|++||.|++.+++.....+. ..|++++|+++|++++.    .++..|+|+|++|+.   .+++.++
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            865446789999999999999997777677777 78999999999997654    599999999999997   7889999


Q ss_pred             HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHH
Q psy355          187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNS  266 (285)
Q Consensus       187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~  266 (285)
                      .+++.|++++|+.+|.++   +..+++.|+.+|.+|+..+++........  +....|-   +.++.  ...+..+.+..
T Consensus       258 ~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv---~LL~s--~~~~i~~~A~~  327 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLK---NLIHS--KHKMIAMGSAA  327 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHH---TTTTC--SSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCC---ChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHH---HHHhC--CCHHHHHHHHH
Confidence            999999999999999998   99999999999999997776543322221  2222222   23332  34566677777


Q ss_pred             HHHHhcCC
Q psy355          267 VLTEVFEE  274 (285)
Q Consensus       267 il~~~f~~  274 (285)
                      .|..+...
T Consensus       328 aL~nL~~~  335 (354)
T 3nmw_A          328 ALRNLMAN  335 (354)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            77666654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.90  E-value=5.1e-22  Score=190.06  Aligned_cols=201  Identities=12%  Similarity=0.221  Sum_probs=172.7

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch--HHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY--ANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn--a~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      +.+.++.+...  +.+....|...+..+...-.|  ...+++.|++|+||.+|++ +++.+|..|+|+|+|+|.+++..+
T Consensus        59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            45556555443  357788999999988654333  5689999999999999975 679999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-----HHHHHHHHHHHH
Q psy355          101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-----EKLVIKSCFLIA  175 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-----~~v~~ka~~~l~  175 (285)
                      +.+++.|++|.|+.+|.+ ++..++..|+|||+||+.+++.....+++.||+++|+.+|.+++     ..+++.++|+++
T Consensus       137 ~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  215 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  215 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence            999999999999999997 68899999999999999999999999999999999999998753     467889999999


Q ss_pred             HHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          176 CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       176 ~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      +++.+...........|+++.|+.+|.++   +.+++..++.+|.+|+..++...
T Consensus       216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~A~~aL~~L~~~~~~~~  267 (510)
T 3ul1_B          216 NLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERI  267 (510)
T ss_dssp             HHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhchhhhH
Confidence            99987654444555568999999999998   99999999999999998886543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.90  E-value=4e-22  Score=188.38  Aligned_cols=239  Identities=12%  Similarity=0.185  Sum_probs=180.4

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh--------cCC--------CHHHHHHHHHHH
Q psy355           26 KIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL--------EGS--------DPELRWRAAETV   89 (285)
Q Consensus        26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL--------~s~--------~~~vr~~A~~~l   89 (285)
                      ..++.|... .+.+.+..|.+.|..++...++...+.. ||+|+|+.+|        .++        ++.++..|+|+|
T Consensus        90 ~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL  167 (457)
T 1xm9_A           90 EAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL  167 (457)
T ss_dssp             HHHHHHTTC-CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred             HHHHHHhhC-CCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHH
Confidence            344555422 2457788889999998887677777899 9999999999        333        466777999999


Q ss_pred             HHHhhCCHHHHHHHHhc-CcHHHHHHhhcc--------------------------------------------------
Q psy355           90 ADIVQNNPFSQNFIIQT-DFLNLLLTSIEH--------------------------------------------------  118 (285)
Q Consensus        90 g~~a~nn~~~q~~v~~~-g~l~~L~~LL~~--------------------------------------------------  118 (285)
                      +|++.+ +..++.+++. |++|+|+.+|.+                                                  
T Consensus       168 ~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (457)
T 1xm9_A          168 RNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS  246 (457)
T ss_dssp             HHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------
T ss_pred             HHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccc
Confidence            999987 8899999998 999999988863                                                  


Q ss_pred             ------------------------------------------------CCCHHHHHHHHHHHHHHhhCChHh---H-HHH
Q psy355          119 ------------------------------------------------DSNTTVQVKSLYAVSCLVRDNEEC---L-KEF  146 (285)
Q Consensus       119 ------------------------------------------------~~~~~v~~~a~~ALs~l~r~~~~~---~-~~f  146 (285)
                                                                      ++++.+++.|+|||+|+++++.+.   . +.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~  326 (457)
T 1xm9_A          247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI  326 (457)
T ss_dssp             -------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH
T ss_pred             cchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHH
Confidence                                                            113567778899999999986432   2 334


Q ss_pred             -HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCC---CCccHHHHHHHHHHHH
Q psy355          147 -IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA---LDTEMNEHLLSALASL  222 (285)
Q Consensus       147 -~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~---~d~~~~e~al~aL~~l  222 (285)
                       .+.||+|.|+++|.+++.+++++|+|+|++|+.+ +.. ..++..|++++|+.+|..++.   .+.++...++.+|.+|
T Consensus       327 v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni  404 (457)
T 1xm9_A          327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL  404 (457)
T ss_dssp             HTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence             4689999999999999999999999999999874 444 455667899999999998710   0135888999999999


Q ss_pred             HhcChHHHhhcccCcccHHHHHHHHHHHccChHh-hHHHHHHHHHHHHHhcCCCC
Q psy355          223 IKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEV-YHKELEHVNSVLTEVFEEDS  276 (285)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e-~~~~~~~~~~il~~~f~~~~  276 (285)
                      +..+++....... ..++ +.    +..++. +. +.++|++|..+|.+||...+
T Consensus       405 ~~~~~~~~~~i~~-~g~l-~~----L~~L~~-~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          405 MASQPQLAKQYFS-SSML-NN----IINLCR-SSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HTTCTHHHHHHCC-HHHH-HH----HHHHHH-CTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HhcCHHHHHHHHH-cCCH-HH----HHHHHc-CCCcHHHHHHHHHHHHHHHcchh
Confidence            9888754332221 1233 32    234553 34 78999999999999997654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=2.3e-22  Score=173.51  Aligned_cols=198  Identities=10%  Similarity=0.107  Sum_probs=166.1

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      +...++.|..++...+.+..|...|..++ .+.++...++..||+|+|+.+|.++++++|..|+|+|+|++.+++.++..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566667666544466778888898887 45667888999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc----------------cCcHHH
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ----------------SKKEKL  166 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~----------------~~~~~v  166 (285)
                      +.+.|++|+|+++|.+..+..+++.|+.+|.|+... +.....+.+ +|+++|+.++.                ..+..+
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            999999999999998546789999999888888764 445555665 68999988653                136799


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHH
Q psy355          167 VIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI  223 (285)
Q Consensus       167 ~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~  223 (285)
                      +.+|+.+|+||+..+++.++.+.+. |+|+.|+.+++..   +.-+.+.+|.+..+|.+|.
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs  228 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS  228 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence            9999999999999888999999976 6789999999873   2236789999999999985

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.90  E-value=2.1e-22  Score=190.35  Aligned_cols=195  Identities=13%  Similarity=0.178  Sum_probs=167.1

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      +...+..|..++  .+.+..|+..|..++...++ ...+.+.||+|+|+.+|+++++.++..|+|+|.|++.+|+.++..
T Consensus         4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSSC--THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHHCCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            455667777653  47789999999999866555 448999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc--------cC--------cHHH
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ--------SK--------KEKL  166 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~--------~~--------~~~v  166 (285)
                      +++.|++|+|+++|..+.++.++..|+|+|+|++.+ +.....+++ ||+++|+++|.        ++        +..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999446789999999999999998 667777888 99999999993        32        4567


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHH
Q psy355          167 VIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI  223 (285)
Q Consensus       167 ~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~  223 (285)
                      ++.|+|+|+||+.. ++.++.+++. |++++|+.+|.+.   ...+..+++.++.+|.++.
T Consensus       160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs  219 (457)
T 1xm9_A          160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS  219 (457)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence            77999999999987 8899999998 9999999999861   0016778999999999886

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.89  E-value=9.3e-22  Score=185.59  Aligned_cols=226  Identities=11%  Similarity=0.057  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHhhcCcc-hHHHHHHcCC-HHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHh
Q psy355           39 DICIGALDNLSDYVCSID-YANDFLKMGG-LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~d-na~~~~~~Gg-~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~L  115 (285)
                      ..+..|.+.|..++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|+|++.+ ++.+++.+++.|++|+|+++
T Consensus       215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l  294 (458)
T 3nmz_A          215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC  294 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence            457889999999987655 4445656777 99999999999999999999999999985 78899999999999999998


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcH----HHHHHHHHHHHHHhc---CCchHHHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCT---DNNQVKQV  187 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~----~v~~ka~~~l~~L~~---~~~~~~~~  187 (285)
                      |.+..+..+++.|+.||.||+.+++.....+. ..||+++|+++|.+++.    .++.+|+|+|++|+.   .+++.++.
T Consensus       295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~  374 (458)
T 3nmz_A          295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI  374 (458)
T ss_dssp             HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            65546789999999999999987766667777 79999999999998654    599999999999997   78899999


Q ss_pred             HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHH
Q psy355          188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSV  267 (285)
Q Consensus       188 l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~i  267 (285)
                      +++.|++++|+.+|.++   +..+++.|+.+|.+|+..+++........  +....|   .+.++.  .+.++.+.+...
T Consensus       375 i~~~G~i~~Lv~LL~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~L---v~LL~s--~~~~v~~~Aa~A  444 (458)
T 3nmz_A          375 LRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSML---KNLIHS--KHKMIAMGSAAA  444 (458)
T ss_dssp             HHHTTHHHHHHHHSSCS---CHHHHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHH---HTTTTC--SSHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHcCC---ChHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHH---HHHHhC--CCHHHHHHHHHH
Confidence            99999999999999998   99999999999999997776543322111  111222   223332  345566777777


Q ss_pred             HHHhcCC
Q psy355          268 LTEVFEE  274 (285)
Q Consensus       268 l~~~f~~  274 (285)
                      |......
T Consensus       445 L~nL~~~  451 (458)
T 3nmz_A          445 LRNLMAN  451 (458)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcC
Confidence            7666543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.89  E-value=2.5e-22  Score=200.02  Aligned_cols=187  Identities=13%  Similarity=0.152  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCcHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~l~~L~~L  115 (285)
                      ...+..|+..|.+++... ++...+++.||+|+|+.||.++++.||..|+++|+|++++.+ .+..+++ .|++|.|+.|
T Consensus       595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~L  673 (810)
T 3now_A          595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALL  673 (810)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHH
Confidence            455678999999999874 678889999999999999999999999999999999998655 5666665 7999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  194 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v  194 (285)
                      +.+ .+..+|+.|+|||||++.+++.+.+.+++ .||+++|+++|.+++.++|..|+|+|+|++.++++....+++.|++
T Consensus       674 L~s-~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i  752 (810)
T 3now_A          674 CED-EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIM  752 (810)
T ss_dssp             GGC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHH
T ss_pred             hcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence            997 67899999999999999988988999998 8999999999999999999999999999999888999999999999


Q ss_pred             HHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ++|+.+|+.++..+.++.+.|+.+|.+++..+
T Consensus       753 ~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          753 ELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            99999997652236899999999999998655

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.88  E-value=1.9e-21  Score=186.74  Aligned_cols=188  Identities=15%  Similarity=0.250  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      .+.+..|.+.|..++.. .++...++..|++|+|+.+|.++++.++..|+|+|||++.+++.+++.+++.|++++|+.+|
T Consensus       134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL  213 (529)
T 3tpo_A          134 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL  213 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHH
Confidence            56788899999999765 45677899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC----CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355          117 EHDS----NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG  192 (285)
Q Consensus       117 ~~~~----~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g  192 (285)
                      ....    ...+.+.++|++++++++..+........+++|.|+++|.+++..++..|+|+|++++.+.++..+.+++.|
T Consensus       214 ~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g  293 (529)
T 3tpo_A          214 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG  293 (529)
T ss_dssp             CSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT
T ss_pred             hccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc
Confidence            8532    346788999999999998766554444568899999999999999999999999999999888889999999


Q ss_pred             cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +++.|+.+|.++   +..++..++.+|.+|+.+++.
T Consensus       294 ~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~  326 (529)
T 3tpo_A          294 VVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDE  326 (529)
T ss_dssp             CHHHHHHHHTCS---CHHHHHHHHHHHHHHTTSCHH
T ss_pred             chHHHHHHhcCC---ChhHHHHHHHHHHHHHccchH
Confidence            999999999998   999999999999999988864

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.88  E-value=1.3e-20  Score=180.11  Aligned_cols=189  Identities=15%  Similarity=0.278  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      .+.+..|++.|..++.. .++...++..|++|+|+.+|.++++.+|..|+|+|++++.+++.++..+++.|++|+|+.+|
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL  211 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL  211 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence            56788999999999886 57778899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      ..+.+..++..|+|+|++++++.+.... ....|+++.|+.+|.+++..++..|+|+|++++.+.+...+.+++.|+++.
T Consensus       212 ~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          212 NEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence            6557899999999999999998644333 345899999999999999999999999999999988888889999999999


Q ss_pred             HHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      |+.+|.++   ++.+++.|+.+|.+|+..++...
T Consensus       291 Lv~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~  321 (528)
T 4b8j_A          291 LVELLLHP---SPSVLIPALRTVGNIVTGDDAQT  321 (528)
T ss_dssp             HHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHcCC---ChhHHHHHHHHHHHHHcCCHHHH
Confidence            99999998   89999999999999999887544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.87  E-value=7.7e-21  Score=189.38  Aligned_cols=224  Identities=13%  Similarity=0.082  Sum_probs=181.0

Q ss_pred             CHHHHHHHHHHHHHhhcCcchHHHHH---HcCCHHHHHhhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHH
Q psy355           37 QKDICIGALDNLSDYVCSIDYANDFL---KMGGLPVLQPLLEGS-DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  112 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~dna~~~~---~~Gg~~~Lv~lL~s~-~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L  112 (285)
                      ++..+..|.+.|..++...+....|.   ..|++|+|+.||.++ +...+..|+++|+|++.+++..++.+++.|++|+|
T Consensus       549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~L  628 (810)
T 3now_A          549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKI  628 (810)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence            35678899999999876555444332   257999999999976 44556799999999999999999999999999999


Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH-
Q psy355          113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS-  190 (285)
Q Consensus       113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~-  190 (285)
                      +.++.+ .++.+++.|+++|+||+.+ +..+..|++ .|++++|+.++.+++..+|+.|+|+|++|+.+++...+.+++ 
T Consensus       629 v~LL~s-~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~  706 (810)
T 3now_A          629 EYYLME-DHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI  706 (810)
T ss_dssp             HHHHHS-CCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred             HHHHcC-CCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999997 5679999999999999986 456777885 789999999999999999999999999999988889999998 


Q ss_pred             CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc-cChH-hhHHHHHHHHHHH
Q psy355          191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH-AGNE-VYHKELEHVNSVL  268 (285)
Q Consensus       191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l-~~~~-e~~~~~~~~~~il  268 (285)
                      .|++++|+.+|.++   +.+++..|+.+|.+++..+++....-...+ .+ +.|.    .+ +.++ .+.++++.+.+.|
T Consensus       707 ~g~I~~Lv~LL~s~---d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G-~i-~~L~----~LL~~~d~~~~~i~e~Al~aL  777 (810)
T 3now_A          707 ASWLDILHTLIANP---SPAVQHRGIVIILNMINAGEEIAKKLFETD-IM-ELLS----GLGQLPDDTRAKAREVATQCL  777 (810)
T ss_dssp             TTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHTTCHHHHHHHHTST-HH-HHHT----TSCCCTTSTTHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CH-HHHH----HHHhCcccCcHHHHHHHHHHH
Confidence            89999999999999   999999999999999987764332222221 22 2222    33 3221 4677888777777


Q ss_pred             HHh
Q psy355          269 TEV  271 (285)
Q Consensus       269 ~~~  271 (285)
                      +..
T Consensus       778 ~~l  780 (810)
T 3now_A          778 AAA  780 (810)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.86  E-value=7.3e-20  Score=170.30  Aligned_cols=189  Identities=14%  Similarity=0.238  Sum_probs=169.1

Q ss_pred             CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +.+.+..|++.|..++.. .++...++..|++|.|+.+|+++++.+|..|+++|++++.+++.+++.+++.|++|.|+++
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  157 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL  157 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence            356788899999998874 4667778899999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCC-hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  194 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~-~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v  194 (285)
                      +.++.+..++..|+|+|++++++. +.....++ .++++.|+.++++++..++..|+|++++++...+.....+++.|++
T Consensus       158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  236 (450)
T 2jdq_A          158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC  236 (450)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH
Confidence            996567899999999999999876 33322233 7899999999999999999999999999999888888899999999


Q ss_pred             HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      +.|+.+|.++   ++.+++.++.+|.+++..++..
T Consensus       237 ~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~  268 (450)
T 2jdq_A          237 RRLVELLMHN---DYKVVSPALRAVGNIVTGDDIQ  268 (450)
T ss_dssp             HHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHCCC---chhHHHHHHHHHHHHhhCChHH
Confidence            9999999988   9999999999999999888754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.86  E-value=4.2e-20  Score=176.87  Aligned_cols=186  Identities=17%  Similarity=0.204  Sum_probs=170.7

Q ss_pred             CHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           37 QKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +.+.+..|++.|..++... .+.......|++|.|+.+|.++++.++..|+|+|++++.+++...+.+++.|++|.|+.+
T Consensus       228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l  307 (530)
T 1wa5_B          228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL  307 (530)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence            3567888999999998764 444456668999999999999999999999999999999988888889999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      |.+ ++..++..|+++|++++.+++...+.+++.|+++.|+.+|++++..++..|+|+|++++.+++...+.+++.|+++
T Consensus       308 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~  386 (530)
T 1wa5_B          308 LSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP  386 (530)
T ss_dssp             GGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             HCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            996 6789999999999999999998888899999999999999999999999999999999998888888999999999


Q ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          196 QMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .|+.+|.++   +..++..++.+|.+++..+
T Consensus       387 ~L~~lL~~~---~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          387 PLVKLLEVA---EYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHHHHHHS---CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcC---CHHHHHHHHHHHHHHHhcC
Confidence            999999988   9999999999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=3.3e-20  Score=159.98  Aligned_cols=201  Identities=16%  Similarity=0.120  Sum_probs=157.2

Q ss_pred             CHHHHHhhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355           66 GLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        66 g~~~Lv~lL~s~~~--~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      .+|+++.+|+|+++  .++..|++.|.+++.+++..++.+.+.|++|+|+++|++ +++.++..|+|||.||+.+++.+.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999988  999999999999999999999999999999999999997 678999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC-------------CCCCc
Q psy355          144 KEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE-------------DALDT  209 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~-------------~~~d~  209 (285)
                      ..+.+.||+++|+++|+ +++..+++.|+.+|.+|... +..+..+++ +++++|+.++..+             ...++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998 47899999999999999764 566777776 5799999887411             01266


Q ss_pred             cHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHH-ccChHhhHHHHHHHHHHHHH
Q psy355          210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEK-HAGNEVYHKELEHVNSVLTE  270 (285)
Q Consensus       210 ~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~-l~~~~e~~~~~~~~~~il~~  270 (285)
                      ++++.|..+|.+|...+++....-+... ++.+.|-+.++. .+..+-.+...|-|.-+|..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~-Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~n  226 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCD-GLIDSLVHYVRGTIADYQPDDKATENCVCILHN  226 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTST-THHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCC-CcHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Confidence            8999999999999987765443333222 343444333332 11111123345556665554

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.86  E-value=3.4e-20  Score=179.12  Aligned_cols=199  Identities=16%  Similarity=0.197  Sum_probs=168.3

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~  101 (285)
                      +...+..|..+  +++.+..|...|..++. +.++...++..||+|+||.+|.++++.++..|+|+|+|++.+ |+.++.
T Consensus        50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            55566666543  35778889999999985 667888999999999999999999999999999999999986 799999


Q ss_pred             HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc------------------cCc
Q psy355          102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ------------------SKK  163 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~------------------~~~  163 (285)
                      .+++.|++|+|+.+|++..+..+++.|+++|.+++. ++.....++ .+|+++|++++.                  +.+
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hccHHHHHHHHhccccccccccccccccccccc
Confidence            999999999999999975678899999999999987 556666677 478999999872                  235


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHHhcC
Q psy355          164 EKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       164 ~~v~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+++..|+++|.||+..+++.++.+++. |+++.|+.+|.+.   ...+...++.|+.+|.+|....
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~  272 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV  272 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence            8999999999999999888889999985 6678999999751   1127789999999999998653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.84  E-value=1.1e-19  Score=162.38  Aligned_cols=145  Identities=15%  Similarity=0.181  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH-hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC  158 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~-LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~  158 (285)
                      +-+..|+..|.+++.+ ......+.+.|++|+|+. +|.+ +++.+|..|+|+|++++.+++..++.+++.||+++|+.+
T Consensus        55 e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            6789999999999975 457778999999999999 9997 688999999999999999999999999999999999999


Q ss_pred             hccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          159 IQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       159 L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      |+++ +..++++|+|+|++++.+++...+.+++.|+++.|+.+|.++   +..++..|+.+|.+|+.++++.
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~~~  201 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEH  201 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCChHH
Confidence            9964 899999999999999999998899999999999999999998   9999999999999999887643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.84  E-value=1.8e-19  Score=171.14  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=173.4

Q ss_pred             CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHH---HHHHHHhcCcHH
Q psy355           37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPF---SQNFIIQTDFLN  110 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~---~q~~v~~~g~l~  110 (285)
                      +.+.+..|+..|..++.. .++...+.+.||++.|+.+|.+  +++.++..|+++|++++.+++.   .+..+++.|++|
T Consensus       279 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~  358 (529)
T 1jdh_A          279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP  358 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChh
Confidence            457788999999999876 3588889999999999999975  4589999999999999987654   577899999999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH--------------
Q psy355          111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC--------------  176 (285)
Q Consensus       111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~--------------  176 (285)
                      .|+++|.++.+..+++.++|+|+|++.+.. .+..+++.|+++.|+.+|++++.++|++|+|+++|              
T Consensus       359 ~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~  437 (529)
T 1jdh_A          359 VVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE  437 (529)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHH
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHH
Confidence            999999975556999999999999998654 55789999999999999999899999999888876              


Q ss_pred             --------HhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHH
Q psy355          177 --------LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIK  248 (285)
Q Consensus       177 --------L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~  248 (285)
                              |+. .++.+..+.+.|++++|+.+|.++   +..++..+..+|.++....+ ........ .++ +    .+
T Consensus       438 ~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~---~~~v~~~a~~~l~~l~~~~~-~~~~i~~~-~~~-~----~L  506 (529)
T 1jdh_A          438 GCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKE-AAEAIEAE-GAT-A----PL  506 (529)
T ss_dssp             HHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSHH-HHHHHHHT-TCH-H----HH
T ss_pred             HHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCC---chHHHHHHHHHHHHHhcCHH-HHHHHHHc-CCh-H----HH
Confidence                    332 356677899999999999999998   99999999999999985532 21111111 122 2    34


Q ss_pred             HHccChHhhHHHHHHHHHHHHHh
Q psy355          249 EKHAGNEVYHKELEHVNSVLTEV  271 (285)
Q Consensus       249 ~~l~~~~e~~~~~~~~~~il~~~  271 (285)
                      ..++ ++++.++++++..+|.++
T Consensus       507 ~~l~-~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          507 TELL-HSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHGG-GCSSHHHHHHHHHHHHHH
T ss_pred             HHHh-cCCCHHHHHHHHHHHHhc
Confidence            4666 458999999999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.82  E-value=9.1e-19  Score=169.15  Aligned_cols=163  Identities=12%  Similarity=0.122  Sum_probs=145.1

Q ss_pred             HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC-ChH
Q psy355           63 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD-NEE  141 (285)
Q Consensus        63 ~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~-~~~  141 (285)
                      ..+++|+||.+|.++++.++..|+++|.+++.+++..+..+++.|+||+|+.+|++ .+..++..|+|||.||+.+ ++.
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHH
Confidence            46789999999999999999999999999999999999999999999999999997 6799999999999999986 688


Q ss_pred             hHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC---------------C
Q psy355          142 CLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE---------------D  205 (285)
Q Consensus       142 ~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~---------------~  205 (285)
                      +...+++.||+++|+++|++ ++..++..|+++|.+|+. .++.+..+++ |++++|+.+|..+               .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            89999999999999999997 578999999999999987 5678888885 5799999987210               0


Q ss_pred             CCCccHHHHHHHHHHHHHhcChH
Q psy355          206 ALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       206 ~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ..+..+++.|..+|.+|+..+++
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~  225 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSE  225 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHH
T ss_pred             cccHHHHHHHHHHHHHHhcCCHH
Confidence            12578999999999999988764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.81  E-value=3.6e-18  Score=167.52  Aligned_cols=184  Identities=11%  Similarity=0.108  Sum_probs=151.9

Q ss_pred             CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcC-C-CHHHHHHHHHHHHHHhhCCH---HHHHHHHhcCcHH
Q psy355           37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEG-S-DPELRWRAAETVADIVQNNP---FSQNFIIQTDFLN  110 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s-~-~~~vr~~A~~~lg~~a~nn~---~~q~~v~~~g~l~  110 (285)
                      +.+.+..|...|.+++.. .++...+.+.||++.|+.+|.+ + .+.++..|+++|++++.+++   ..|..+++.|++|
T Consensus       276 d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~  355 (644)
T 2z6h_A          276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP  355 (644)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChH
Confidence            357788999999999876 3677889999999999999986 3 38999999999999998655   4677799999999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH----------------
Q psy355          111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI----------------  174 (285)
Q Consensus       111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l----------------  174 (285)
                      .|+++|.++.+..+++.|+|+|+|++.+.. .++.+++.|+++.|+++|.+++..+|++|+|++                
T Consensus       356 ~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~  434 (644)
T 2z6h_A          356 VVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE  434 (644)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHH
T ss_pred             HHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHH
Confidence            999999986567999999999999999754 458899999999999999986666655555544                


Q ss_pred             ------HHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          175 ------ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       175 ------~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                            .+|+.. +..+..+.+.|++++|+.+|.++   +..++..++.+|.++...
T Consensus       435 ~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          435 GCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcC
Confidence                  445443 35667888999999999999988   899999999999999865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.80  E-value=1.1e-17  Score=158.79  Aligned_cols=197  Identities=14%  Similarity=0.202  Sum_probs=170.5

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  103 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v  103 (285)
                      +...++.|.+. .+.+.+..|+..|..+....++...+.+.||+|.|+.+|+++++.++..|+++|++++.+++..+..+
T Consensus        61 i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  139 (529)
T 1jdh_A           61 VSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV  139 (529)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            44445555443 24577889999999999888889999999999999999999999999999999999999888888899


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCCc
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~~  182 (285)
                      .+.|++|.|+++|.+ ++..++..++.+|++++.+++.....+.+.||++.|+++|++++ ...+..++.++.+++. .+
T Consensus       140 ~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~  217 (529)
T 1jdh_A          140 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS  217 (529)
T ss_dssp             HHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-ST
T ss_pred             HHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-Cc
Confidence            999999999999997 67899999999999999999999999999999999999999764 6777788899999986 56


Q ss_pred             hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ..+..+++.|+++.|+.++.++   ++.+++.++.+|.++....
T Consensus       218 ~~~~~~~~~g~~~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~  258 (529)
T 1jdh_A          218 SNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAA  258 (529)
T ss_dssp             THHHHHHHTTHHHHHHTTTTSS---CHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHCCCHHHHHHHHhCC---ChHHHHHHHHHHHHHhcCC
Confidence            7889999999999999999877   7777777777777776543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.78  E-value=3.7e-17  Score=160.30  Aligned_cols=198  Identities=14%  Similarity=0.198  Sum_probs=172.6

Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      .+...+..|... .+.+.+..|+..|..++...++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus        57 ~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~  135 (644)
T 2z6h_A           57 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  135 (644)
T ss_dssp             HHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence            355566666643 2467788999999999988888889999999999999999999999999999999999988778888


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCC
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~  181 (285)
                      +++.|++|.|+++|++ .+..++..++.+|++++.+++.....+.+.||++.|+++|++++ .+++..++.++.+|+. .
T Consensus       136 v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~  213 (644)
T 2z6h_A          136 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C  213 (644)
T ss_dssp             HHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-C
T ss_pred             HHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-C
Confidence            9999999999999997 56788888889999999989999999999999999999999864 7888999999999986 5


Q ss_pred             chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       182 ~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +..+..+++.|+++.|+.+|..+   +..+++.++.+|.+++...
T Consensus       214 ~~~~~~l~~~g~l~~L~~ll~~~---~~~~~~~a~~~L~nL~~~~  255 (644)
T 2z6h_A          214 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAA  255 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTCS---CHHHHHHHHHHHHHHGGGC
T ss_pred             cccHHHHHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhhcc
Confidence            67899999999999999999887   7778888888887776643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.76  E-value=6.5e-17  Score=162.12  Aligned_cols=184  Identities=12%  Similarity=0.103  Sum_probs=154.2

Q ss_pred             CHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcC-CC-HHHHHHHHHHHHHHhhCCHH---HHHHHHhcCcHH
Q psy355           37 QKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEG-SD-PELRWRAAETVADIVQNNPF---SQNFIIQTDFLN  110 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s-~~-~~vr~~A~~~lg~~a~nn~~---~q~~v~~~g~l~  110 (285)
                      +.+.+..|+..|..++... ++...+.+.||++.|+.+|.+ ++ ..++..|+++||+++.+++.   .|..+...|++|
T Consensus       412 d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~  491 (780)
T 2z6g_A          412 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP  491 (780)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH
Confidence            3577889999999998764 577788999999999999976 33 49999999999999987654   467889999999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHH----------------------HH
Q psy355          111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKL----------------------VI  168 (285)
Q Consensus       111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v----------------------~~  168 (285)
                      .|+++|.++.+..+++.|+|+|+|++++. ..+..+++.|+++.|+.+|.+++..+                      +.
T Consensus       492 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~  570 (780)
T 2z6g_A          492 VVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE  570 (780)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHH
Confidence            99999998655699999999999999864 45678889999999999998765544                      44


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          169 KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       169 ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      .++.+|.+|+. ++..+..+.+.|++++|+.+|.++   +..++..++.+|.+++..
T Consensus       571 ~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          571 ACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcC
Confidence            55666666654 456777888999999999999998   999999999999999854

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.74  E-value=1.1e-15  Score=153.13  Aligned_cols=199  Identities=14%  Similarity=0.203  Sum_probs=176.2

Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      .+...+..|.+. .+.+.+..|+..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus       193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~  271 (780)
T 2z6g_A          193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA  271 (780)
T ss_dssp             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence            344455555543 2467889999999999888888888999999999999999999999999999999999998888999


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCC
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~  181 (285)
                      +.+.|++|.|+.+|.+ .+..++..++.+|++++.+++.....+++.||++.|+.+|++++ ...+..++.++.+|+. .
T Consensus       272 v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~  349 (780)
T 2z6g_A          272 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C  349 (780)
T ss_dssp             HHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-S
T ss_pred             HHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-C
Confidence            9999999999999996 67899999999999999999999999999999999999999864 6677788999999986 5


Q ss_pred             chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       182 ~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +..+..+++.|+++.|+.+|.++   +..+++.++.+|.+|+...+
T Consensus       350 ~~~~~~i~~~g~l~~Ll~lL~~~---~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          350 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             TTHHHHHHHTTHHHHHGGGTTCS---CHHHHHHHHHHHHHHHTTCT
T ss_pred             hHHHHHHHHhchHHHHHHHHcCC---chHHHHHHHHHHHHHhccch
Confidence            67889999999999999999988   89999999999999997764

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.6e-15  Score=149.17  Aligned_cols=226  Identities=11%  Similarity=0.130  Sum_probs=166.7

Q ss_pred             CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHH---HHHHHHHHHHHHh-hCCHHHHHHHHh---cCcH
Q psy355           37 QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPE---LRWRAAETVADIV-QNNPFSQNFIIQ---TDFL  109 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~---vr~~A~~~lg~~a-~nn~~~q~~v~~---~g~l  109 (285)
                      ++..+..|.+.|..++.+.++...+++.||+++|+.+|.+....   +|..|+.+|++++ +.||..  .+-.   .|++
T Consensus       470 s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI  547 (778)
T 3opb_A          470 SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAI  547 (778)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccch
Confidence            46788899999999999989999999999999999999987654   8999999999998 567764  2211   3999


Q ss_pred             HHHHHhhccCCCH-------------HHHHHHHHHHHHHhhCCh----HhHHHHHhc-CcHHHHHHhhccCcHHHHHHHH
Q psy355          110 NLLLTSIEHDSNT-------------TVQVKSLYAVSCLVRDNE----ECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSC  171 (285)
Q Consensus       110 ~~L~~LL~~~~~~-------------~v~~~a~~ALs~l~r~~~----~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~  171 (285)
                      |+|+.||..++..             -.+..|+.||.||+....    ...+.++.. |+++.|..+|.+++..+|+.|+
T Consensus       548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~  627 (778)
T 3opb_A          548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL  627 (778)
T ss_dssp             HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999832111             237799999999999762    335667875 9999999999999999999999


Q ss_pred             HHHHHHhcCCchHH-HHHHHCC------cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh-hcccCcccHHHH
Q psy355          172 FLIACLCTDNNQVK-QVLLSMG------MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS-LCRLEPLNLKFK  243 (285)
Q Consensus       172 ~~l~~L~~~~~~~~-~~l~~~g------~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~-~~~~~~~~l~~~  243 (285)
                      ++++||+.+ +..+ +.+...+      .++.|+.++.++   |.++|..|..+|.+++..++.... ....++ ++ +.
T Consensus       628 elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~---D~~~r~AAagALAnLts~~~~ia~~ll~~~~-gi-~~  701 (778)
T 3opb_A          628 ELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLS---DVESQRAVAAIFANIATTIPLIAKELLTKKE-LI-EN  701 (778)
T ss_dssp             HHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHH-HH-HH
T ss_pred             HHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCChHHHHHHHHccc-cH-HH
Confidence            999999974 4432 2333222      388999999998   999999999999999887775322 222211 22 22


Q ss_pred             HHHHHHHccChHhhHHHHHHHHHHHHHhcC
Q psy355          244 LNFIKEKHAGNEVYHKELEHVNSVLTEVFE  273 (285)
Q Consensus       244 l~~~~~~l~~~~e~~~~~~~~~~il~~~f~  273 (285)
                      +   ++-++..+++.+....+.-++...+.
T Consensus       702 L---l~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          702 A---IQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             H---HHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             H---HHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            2   22332212456666666666666664

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.5e-15  Score=147.88  Aligned_cols=217  Identities=11%  Similarity=0.145  Sum_probs=164.8

Q ss_pred             HhHHHHHHHHHHhcCC---------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc------------------
Q psy355            4 ANRGFLLDALNSMMVN---------VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID------------------   56 (285)
Q Consensus         4 e~~~~L~~al~~~~~d---------~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d------------------   56 (285)
                      +.|+|-=|.|..++.+         +...++..++++....++ .....++..|..++...+                  
T Consensus       349 ~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~-s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~  427 (778)
T 3opb_A          349 PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMT-HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX  427 (778)
T ss_dssp             HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCT-THHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence            4488888888888722         233366677777753321 234445555555443211                  


Q ss_pred             ---------------------hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           57 ---------------------YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        57 ---------------------na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                                           |...+.+.|++|+|+.++.++++.+|..|+|+|++++. ++.++..+++.|++|+|+.+
T Consensus       428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~l  506 (778)
T 3opb_A          428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEY  506 (778)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHH
T ss_pred             cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence                                 23456889999999999999999999999999999985 58899999999999999999


Q ss_pred             hccCCCH--HHHHHHHHHHHHHhhCChHhHHHHHh---cCcHHHHHHhhcc-CcH-------------HHHHHHHHHHHH
Q psy355          116 IEHDSNT--TVQVKSLYAVSCLVRDNEECLKEFIK---RDGFSVLLRCIQS-KKE-------------KLVIKSCFLIAC  176 (285)
Q Consensus       116 L~~~~~~--~v~~~a~~ALs~l~r~~~~~~~~f~~---~~gi~~L~~~L~~-~~~-------------~v~~ka~~~l~~  176 (285)
                      |.+.+..  .+|..|+.||++++-...+.. .|-.   .|++++|+++|.. +..             .-+..|+.+|+|
T Consensus       507 L~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN  585 (778)
T 3opb_A          507 LANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN  585 (778)
T ss_dssp             TTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred             HhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence            9975332  289999999999986654433 3421   4899999999983 211             237799999999


Q ss_pred             HhcCC----chHHHHHHHC-CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          177 LCTDN----NQVKQVLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       177 L~~~~----~~~~~~l~~~-g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      |++..    .+.++.+++. |+++.|..+|.++   +..++..|+.++.+|+...
T Consensus       586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~---n~~VrrAA~elI~NL~~~~  637 (778)
T 3opb_A          586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDE---NVPLQRSTLELISNMMSHP  637 (778)
T ss_dssp             HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHTSG
T ss_pred             HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC---CHHHHHHHHHHHHHHhCCc
Confidence            99975    3567888986 9999999999988   8899999999999999743

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.54  E-value=8.9e-13  Score=127.01  Aligned_cols=200  Identities=19%  Similarity=0.264  Sum_probs=166.0

Q ss_pred             HhHHHHHHHHHHhc---CCH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc------------------hHHH
Q psy355            4 ANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID------------------YAND   60 (285)
Q Consensus         4 e~~~~L~~al~~~~---~d~--~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d------------------na~~   60 (285)
                      |||+==-.+|++++   +.+  ...|+-.+.+|.+..++++-...+|+.|..+....+                  ++..
T Consensus        37 eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~  116 (651)
T 3grl_A           37 DDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI  116 (651)
T ss_dssp             HHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence            33433334566665   333  234888889998887777777778888877654422                  2334


Q ss_pred             H-HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhc-CcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355           61 F-LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        61 ~-~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~-g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r  137 (285)
                      | .+.++++.|+.+|++++..+|..|+.+|..++.++|. .|+.++.. ++++.|+.+|+. +.+.+|-.|+..|+++++
T Consensus       117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~  195 (651)
T 3grl_A          117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTR  195 (651)
T ss_dssp             HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHT
T ss_pred             HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhc
Confidence            4 3467899999999999999999999999999999999 89999966 999999999995 578999999999999999


Q ss_pred             CChHhHHHHHhcCcHHHHHHhhccC----cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355          138 DNEECLKEFIKRDGFSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       138 ~~~~~~~~f~~~~gi~~L~~~L~~~----~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      +++..++.+.-.|+++.|+.++...    ...+...+..++.+|++.+++.+.++.+.|+++.|+.+|..+
T Consensus       196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~  266 (651)
T 3grl_A          196 SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG  266 (651)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC
T ss_pred             CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC
Confidence            9999888887789999999999864    358899999999999999999999999999999999999865

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.44  E-value=1e-11  Score=119.71  Aligned_cols=219  Identities=17%  Similarity=0.208  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCH
Q psy355            6 RGFLLDALNSMM----VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDP   79 (285)
Q Consensus         6 ~~~L~~al~~~~----~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~   79 (285)
                      +.||+..|..-.    .+..+.+.+...-+.+. .-.++|..|+..|..+..+.   ..-+..+|++.|+..|+.  .+.
T Consensus         1 m~~~~~~~g~~~~~~~qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~   76 (651)
T 3grl_A            1 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDS   76 (651)
T ss_dssp             -----------------CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCH
T ss_pred             ChHHHhhhCCCCCCCCCChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccH
Confidence            357777776543    56677777777777662 23689999999999998642   244557889999999986  688


Q ss_pred             HHHHHHHHHHHHHhhCCHH-----------------HHHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH
Q psy355           80 ELRWRAAETVADIVQNNPF-----------------SQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~-----------------~q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      ++...++.+|.++...++.                 ..+.++ +.+.++.|+.+|++ .+..+|..++..|+.++.+.+.
T Consensus        77 e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~  155 (651)
T 3grl_A           77 EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGP  155 (651)
T ss_dssp             HHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcH
Confidence            9999999999988776543                 223343 45899999999996 6889999999999999999988


Q ss_pred             -hHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC-CCCccHHHHHHHH
Q psy355          142 -CLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED-ALDTEMNEHLLSA  218 (285)
Q Consensus       142 -~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~-~~d~~~~e~al~a  218 (285)
                       .++.+... +|++.|+.+|+++...+|.+|..+|.+|+.++++.++.+.-.|+++.|.+++.... .....+.+-++..
T Consensus       156 ~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l  235 (651)
T 3grl_A          156 QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL  235 (651)
T ss_dssp             HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence             67778855 89999999999999999999999999999999999999999999999999999750 0122678999999


Q ss_pred             HHHHHhcChHH
Q psy355          219 LASLIKDSTEA  229 (285)
Q Consensus       219 L~~l~~~~~~~  229 (285)
                      |.+|++.++..
T Consensus       236 l~nLLr~N~sN  246 (651)
T 3grl_A          236 LQNLLKNNNSN  246 (651)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHHhcCHHH
Confidence            99999999743

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.36  E-value=5e-12  Score=124.92  Aligned_cols=165  Identities=15%  Similarity=0.233  Sum_probs=136.3

Q ss_pred             CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH-hhccCCCHHHHHHHHHHHHHHhhC-ChHh
Q psy355           65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRD-NEEC  142 (285)
Q Consensus        65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~-LL~~~~~~~v~~~a~~ALs~l~r~-~~~~  142 (285)
                      +.+.|++..|+|+++..|..||++|+++++ ++..++.+...|++++++. +|. +++..||..|++||.||+.+ .+..
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCchH
Confidence            357778888999999999999999999997 7888999999999988765 555 57899999999999999875 4666


Q ss_pred             HHHHHhcCcHHHHHHhhccCc---------------------HHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhc
Q psy355          143 LKEFIKRDGFSVLLRCIQSKK---------------------EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI  201 (285)
Q Consensus       143 ~~~f~~~~gi~~L~~~L~~~~---------------------~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL  201 (285)
                      ...++..|++++|..+|++..                     ..+...+++++.+|+.++......+...|.++.|+.+|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            777888999999998886421                     12344677889999988888888999999999999998


Q ss_pred             ccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          202 DIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       202 ~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      .+.+....+++..++.+|..+..++++...
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~  221 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQ  221 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHH
Confidence            654222357999999999999999986544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.22  E-value=1.4e-10  Score=114.62  Aligned_cols=183  Identities=13%  Similarity=0.055  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHH-hhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQ-PLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv-~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~L  115 (285)
                      .++|..|+..|..++++..+...+.+.|++++++ .+|..++.+||..|+++|+|++.. .+.+...+++.|++++|..+
T Consensus        48 ~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~  127 (684)
T 4gmo_A           48 AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHA  127 (684)
T ss_dssp             CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHH
Confidence            4789999999999999877788899999998765 589999999999999999999974 67888889999999999999


Q ss_pred             hccCC-------------C-------HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC---cHHHHHHHHH
Q psy355          116 IEHDS-------------N-------TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCF  172 (285)
Q Consensus       116 L~~~~-------------~-------~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~---~~~v~~ka~~  172 (285)
                      |.+..             .       ..+...++++|.+++.++..+...+...++++.|+..|.+.   ...++..|+.
T Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~  207 (684)
T 4gmo_A          128 AKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAIS  207 (684)
T ss_dssp             HHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred             HHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            86410             0       12334677889999999999999999999999999988543   5789999999


Q ss_pred             HHHHHhcCCchHHHHHHHCCcHHHHHHhc--ccCCCCCccHHHHHHHHHHHHH
Q psy355          173 LIACLCTDNNQVKQVLLSMGMVEQMCVLI--DIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       173 ~l~~L~~~~~~~~~~l~~~g~v~~L~~lL--~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +|+.++.+++...+.+.+.|....+..++  ...   +...+..+...|.++.
T Consensus       208 ~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~---~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          208 CLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG---TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS---SCTTHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC---CcHHHHHHHHHHHhHh
Confidence            99999999999999999877543322222  233   4445667777888874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.17  E-value=1.1e-09  Score=91.67  Aligned_cols=200  Identities=14%  Similarity=0.091  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHH
Q psy355            6 RGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRA   85 (285)
Q Consensus         6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A   85 (285)
                      ++|.+.++...  .+-+.+...++.|.++  +...+..|+..|..+-.          -++++.|+.+|.++++.+|..|
T Consensus         5 ~~~~~~~~~~~--~~~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a   70 (211)
T 3ltm_A            5 PQFEKAAAPLR--ADPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAA   70 (211)
T ss_dssp             -------------CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHH
T ss_pred             cccchhhhHhh--cCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHH
Confidence            34555554332  2234455556666543  45778888888887643          2578999999999999999999


Q ss_pred             HHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHH
Q psy355           86 AETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEK  165 (285)
Q Consensus        86 ~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~  165 (285)
                      +++||.+..           .++++.|+.+|.+ +++.+|..|+++|+.+.  .         ...++.|+.+|.+++..
T Consensus        71 ~~aL~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~  127 (211)
T 3ltm_A           71 ADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDEDWF  127 (211)
T ss_dssp             HHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHH
T ss_pred             HHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHH
Confidence            999998863           3578999999985 78899999999999873  2         24678889999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH
Q psy355          166 LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN  245 (285)
Q Consensus       166 v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~  245 (285)
                      +|..|+++++.+-.           ...++.|..+|.++   ++.+|..++.+|..+-  .+..           ...|.
T Consensus       128 vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~--~~~~-----------~~~L~  180 (211)
T 3ltm_A          128 VRIAAAFALGEIGD-----------ERAVEPLIKALKDE---DGWVRQSAADALGEIG--GERV-----------RAAME  180 (211)
T ss_dssp             HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC--SHHH-----------HHHHH
T ss_pred             HHHHHHHHHHHcCC-----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhC--chhH-----------HHHHH
Confidence            99999999999832           24788999999888   8999999999999873  2221           12222


Q ss_pred             HHHHHccChHhhHHHHHHHHHHHHHhcCC
Q psy355          246 FIKEKHAGNEVYHKELEHVNSVLTEVFEE  274 (285)
Q Consensus       246 ~~~~~l~~~~e~~~~~~~~~~il~~~f~~  274 (285)
                      ..+   +  +++..+...+...|..+.+.
T Consensus       181 ~~l---~--d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          181 KLA---E--TGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHH---H--HCCHHHHHHHHHHHHC----
T ss_pred             HHH---h--CCCHHHHHHHHHHHHhcCCC
Confidence            222   1  34556677777777665443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.15  E-value=2.3e-09  Score=89.00  Aligned_cols=153  Identities=17%  Similarity=0.187  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      .......++.|.+++  ...+..|+..|..+-.          .++++.|+.+|.++++.+|..|+++||.+..      
T Consensus        13 ~~~~~~~i~~L~~~~--~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDS--YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSC--HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             CcchHHHHHHhcCCC--HHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            344555666666644  4678888888887543          2568999999999999999999999998753      


Q ss_pred             HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                           .++++.|+.+|.+ +++.+|..|+++|+.+.  .+         ..++.|+.+|.+++..+|..|++++..+-. 
T Consensus        75 -----~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKD-EDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                 2578999999986 78999999999999873  22         367888999999999999999999998842 


Q ss_pred             CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355          181 NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       181 ~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                                .+.++.|..+|.++   ++.+|..++.+|..+
T Consensus       137 ----------~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDE---DGWVRQSAADALGEI  165 (201)
T ss_dssp             ----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHh
Confidence                      35788999999988   999999999999988

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.14  E-value=1.5e-09  Score=90.81  Aligned_cols=143  Identities=13%  Similarity=0.079  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      ...+..|+..|..+-.          .++++.|+.+|+++++.||..|+++||.+..           .++++.|+.++.
T Consensus        64 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~  122 (211)
T 3ltm_A           64 AWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK  122 (211)
T ss_dssp             HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh
Confidence            4566677777666532          2468999999999999999999999998853           357899999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                      + +++.+|..|+++|+.+.  .+         ..++.|..++++++..+|..|+++|..+-.           ..+++.|
T Consensus       123 d-~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L  179 (211)
T 3ltm_A          123 D-EDWFVRIAAAFALGEIG--DE---------RAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAM  179 (211)
T ss_dssp             C-SSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHH
Confidence            5 78999999999999982  22         367888999999999999999999999832           2467888


Q ss_pred             HHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          198 CVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      ..++..+   ++.+|..|..+|..+...++
T Consensus       180 ~~~l~d~---~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          180 EKLAETG---TGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHC---CHHHHHHHHHHHHC------
T ss_pred             HHHHhCC---CHHHHHHHHHHHHhcCCCCC
Confidence            8999988   99999999999998876654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.13  E-value=2.8e-09  Score=88.48  Aligned_cols=139  Identities=12%  Similarity=0.093  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      ...+..|+..|..+-.          .++++.|+.+|.++++.||..|+++||.+..           ..+++.|+.+|.
T Consensus        59 ~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~  117 (201)
T 3ltj_A           59 AWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK  117 (201)
T ss_dssp             HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHc
Confidence            4567777777766532          2468999999999999999999999998753           247899999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                      + +++.+|..|+++|+.+.  .         ...++.|..++.+++..+|..|++++..+-  .+         .+++.|
T Consensus       118 d-~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L  174 (201)
T 3ltj_A          118 D-EDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAM  174 (201)
T ss_dssp             C-SSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHH
Confidence            5 68999999999999973  2         246788899999999999999999999982  22         367888


Q ss_pred             HHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          198 CVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       198 ~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      ..++..+   ++.+|..|..+|..+-
T Consensus       175 ~~~l~d~---~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          175 EKLAETG---TGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHC---CHHHHHHHHHHHHHCC
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHH
Confidence            8899888   9999999999997753

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.08  E-value=2.7e-09  Score=93.12  Aligned_cols=61  Identities=11%  Similarity=0.147  Sum_probs=38.7

Q ss_pred             cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      .++.|+.+|++++..+|..|++++..+....+         .+++.|+.+|..+   ++.+|..++.+|..+.
T Consensus       160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~---~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          160 TIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK---NEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC---CHHHHHHHHHHHHHhC
Confidence            56666666666666666666666666532222         3456677777666   6777777777776654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.03  E-value=1.8e-08  Score=87.85  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=68.6

Q ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355          107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ  186 (285)
Q Consensus       107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~  186 (285)
                      +++|.|+.++.+ ++..+|..|+++|+.+..+.+         ..++.|+.+|++++..+|..|+++|..+..       
T Consensus       159 ~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------  221 (280)
T 1oyz_A          159 ATIPLLINLLKD-PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------  221 (280)
T ss_dssp             CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------
Confidence            477888888774 567788888888877643222         245788899998899999999999998741       


Q ss_pred             HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                          ..+++.|+.+|..+   +  ++..+..+|..+-
T Consensus       222 ----~~~~~~L~~~l~d~---~--vr~~a~~aL~~i~  249 (280)
T 1oyz_A          222 ----KRVLSVLCDELKKN---T--VYDDIIEAAGELG  249 (280)
T ss_dssp             ----GGGHHHHHHHHTSS---S--CCHHHHHHHHHHC
T ss_pred             ----HhhHHHHHHHhcCc---c--HHHHHHHHHHhcC
Confidence                35788888888765   4  7888888888763

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.88  E-value=2.8e-09  Score=107.27  Aligned_cols=174  Identities=12%  Similarity=0.094  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355           41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS  120 (285)
Q Consensus        41 ~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~  120 (285)
                      +..|...|..++....  ..+.. ..++.+..+++++++.+|..|+++||+++.+.+..... .-.+++|.|+.++.+ +
T Consensus       338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d-~  412 (852)
T 4fdd_A          338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSD-K  412 (852)
T ss_dssp             HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCC-C
Confidence            5556666666554322  12111 34677778889999999999999999999987753222 224688999999985 7


Q ss_pred             CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHH
Q psy355          121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCV  199 (285)
Q Consensus       121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~  199 (285)
                      ++.||..|+|+|++++...+.......-.+.++.|+..|.++++++|..|++++.+++... +....++  .++++.|+.
T Consensus       413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~  490 (852)
T 4fdd_A          413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVF  490 (852)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHH
Confidence            8999999999999998753321111111356788889998889999999999999998652 2233333  357788888


Q ss_pred             hcccCCCCCccHHHHHHHHHHHHHh
Q psy355          200 LIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       200 lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      ++...   +.+....++.++..++.
T Consensus       491 ~l~~~---~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          491 AFSKY---QHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             HHHHC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHh---ChHHHHHHHHHHHHHHH
Confidence            88877   66666777888888864

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.85  E-value=1.6e-08  Score=101.74  Aligned_cols=180  Identities=16%  Similarity=0.181  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHHHhhcCcchHHHHHHc---CCHHHHHhhh-----------cC-----------CCHHHHHHHHHHHHH
Q psy355           37 QKDICIGALDNLSDYVCSIDYANDFLKM---GGLPVLQPLL-----------EG-----------SDPELRWRAAETVAD   91 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~dna~~~~~~---Gg~~~Lv~lL-----------~s-----------~~~~vr~~A~~~lg~   91 (285)
                      +++.+..|++-+..+++..... .+.+-   ..+|.++..+           ..           ++..+|..|+.+|+.
T Consensus       269 ~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~  347 (852)
T 4fdd_A          269 DENVALEACEFWLTLAEQPICK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV  347 (852)
T ss_dssp             SHHHHHHHHHHHHHHTTSTTHH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence            3567888888888888753222 22211   2345555555           22           233579999999999


Q ss_pred             HhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHH
Q psy355           92 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC  171 (285)
Q Consensus        92 ~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~  171 (285)
                      ++...+   +.++. .++|.+..++.+ ++..+|..|+++|++++.+.+.....+. .+.++.++.++++++..+|..|+
T Consensus       348 la~~~~---~~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~  421 (852)
T 4fdd_A          348 LANVYR---DELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITC  421 (852)
T ss_dssp             HHHHHG---GGGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHhcc---HHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHH
Confidence            997543   12222 467778888875 6789999999999999998876444332 45789999999999999999999


Q ss_pred             HHHHHHhcCCch--HHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          172 FLIACLCTDNNQ--VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       172 ~~l~~L~~~~~~--~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      |+++.++...+.  ...++  .++++.|+..|..+   ++.+++.++.+|.+++...+.
T Consensus       422 ~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~---~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          422 WTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDS---NKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhhH
Confidence            999998864211  11111  25778888888877   899999999999999976643

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.85  E-value=1.6e-10  Score=90.03  Aligned_cols=120  Identities=9%  Similarity=0.101  Sum_probs=91.4

Q ss_pred             cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355           64 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL  143 (285)
Q Consensus        64 ~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~  143 (285)
                      .+.++.++.+|+++++.+|..|+++||.+...            .++.|+.+|.+ +++.+|..|+|+|+++.  .+   
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~--~~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQ--DE---   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGC-SCHHHHHHHHHHHGGGC--SH---
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcC--CH---
Confidence            45678899999999999999999999976421            36899999985 78999999999999974  22   


Q ss_pred             HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355          144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  221 (285)
Q Consensus       144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~  221 (285)
                            ..++.|+.+|++++..+|..|++++..+..           ...++.|..+|+.+   +..++..+..+|..
T Consensus        73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~---~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETG---TGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSC---CTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Confidence                  247788899999999999999999998742           23678899999887   89999999988754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.81  E-value=4.3e-08  Score=95.04  Aligned_cols=177  Identities=16%  Similarity=0.190  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      ..+..|+..|..+. ..+.+..+     ++.+.++|.++++.||..|+++++++...+|.   .+-+.|++|.|..+|. 
T Consensus       101 ~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~-  170 (591)
T 2vgl_B          101 LIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA-  170 (591)
T ss_dssp             HHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC-
Confidence            34555555555443 22333332     46788999999999999999999999998775   2333578999999998 


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHh---------HHHHHh----------------------------cCcHHHHHHhhcc
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEEC---------LKEFIK----------------------------RDGFSVLLRCIQS  161 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~---------~~~f~~----------------------------~~gi~~L~~~L~~  161 (285)
                      ++++.|+..|+++|+.++..++..         ...++.                            ...++.+..+|++
T Consensus       171 d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~  250 (591)
T 2vgl_B          171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSH  250 (591)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCS
T ss_pred             CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcC
Confidence            578999999999999998876521         222221                            1234556666778


Q ss_pred             CcHHHHHHHHHHHHHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          162 KKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       162 ~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      .+..++..|++++.++...   +++..+.+. ..+.++|+.++. +   ++.+|-.++.+|..+....|+.+
T Consensus       251 ~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~---d~~vr~~aL~~l~~i~~~~p~~~  317 (591)
T 2vgl_B          251 ANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G---EPEVQYVALRNINLIVQKRPEIL  317 (591)
T ss_dssp             STTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S---CHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             CChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C---CccHHHHHHHHHHHHHHhChHHH
Confidence            8899999999999998742   344444433 356678887764 6   88999999999999998877543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.80  E-value=6e-07  Score=80.14  Aligned_cols=182  Identities=15%  Similarity=0.167  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSD-YVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~-lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn   96 (285)
                      ..+..+..++++.|.+.  +.+++..+|-.|.. +.++.+.|..|+..||+..|++.....+...+..++++++++.-..
T Consensus       114 tsps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v  191 (339)
T 3dad_A          114 TQLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV  191 (339)
T ss_dssp             ECHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH
T ss_pred             cCcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc
Confidence            56778889999999853  46789999999999 5688999999999999999999999999999999999999999654


Q ss_pred             HHHHHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh-------cCc---HHHHHHhhc---cC
Q psy355           97 PFSQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-------RDG---FSVLLRCIQ---SK  162 (285)
Q Consensus        97 ~~~q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~-------~~g---i~~L~~~L~---~~  162 (285)
                      .- -+.++ ....|..+..++.+ .+..|.+.|+.-|-+++-..+.....+.+       ..|   ++.|+.+|+   +.
T Consensus       192 ~G-m~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~  269 (339)
T 3dad_A          192 DG-MLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA  269 (339)
T ss_dssp             HH-HHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred             cc-ccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence            43 43444 45688888999995 77899999999999998876654443332       223   789999998   67


Q ss_pred             cHHHHHHHHHHHHHHhcCCc------hHHHHHHHCCcHHHHHHhccc
Q psy355          163 KEKLVIKSCFLIACLCTDNN------QVKQVLLSMGMVEQMCVLIDI  203 (285)
Q Consensus       163 ~~~v~~ka~~~l~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~  203 (285)
                      +..++.+|..+|..+..+-|      +....+-+.|+=..+...|++
T Consensus       270 D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~  316 (339)
T 3dad_A          270 DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT  316 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence            99999999999999887755      233445556655556665654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.77  E-value=1.6e-07  Score=90.94  Aligned_cols=179  Identities=13%  Similarity=0.177  Sum_probs=138.9

Q ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355           19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      .+...+|+.+   .++  +++.+..++..+.++.-. .|.      ..+++.+++++++++..+|..+...++.++..++
T Consensus        13 ~e~~~i~~~L---~~~--~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~   81 (591)
T 2vgl_B           13 GEIFELKAEL---NNE--KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP   81 (591)
T ss_dssp             SHHHHHHHHT---TSS--CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH
T ss_pred             ChHHHHHHHH---cCC--CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc
Confidence            4555555554   332  356788888888776432 221      2357889999999999999999999999998776


Q ss_pred             HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355           98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus        98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      ...     .-+++.|.+-|.+ +++.+|..|+.+|+++.  .+.....+     ++.+.++|.++++.+|++|++++..+
T Consensus        82 e~~-----~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i  148 (591)
T 2vgl_B           82 DMA-----IMAVNSFVKDCED-PNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKL  148 (591)
T ss_dssp             HHH-----HTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             hHH-----HHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            643     2246778888885 78999999999999984  44433333     57788999999999999999999999


Q ss_pred             hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      ...+|+...   +.++++.|..+|..+   ++.++..|+.+|..+...++
T Consensus       149 ~~~~p~~~~---~~~~~~~l~~lL~d~---d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          149 HDINAQMVE---DQGFLDSLRDLIADS---NPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHSSCCCHH---HHHHHHHHHHTTSCS---CHHHHHHHHHHHHHHTTSCC
T ss_pred             HhhChhhcc---cccHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhhCC
Confidence            988776442   357889999999988   99999999999999998775

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.76  E-value=1.2e-06  Score=85.34  Aligned_cols=148  Identities=14%  Similarity=0.117  Sum_probs=118.3

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+..|.+-|+++++.+|..|+++||++.  ++...     ..++|.+.++|.+ +++.||++|+.|+..+.+.+|.... 
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-----~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~-  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-----RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME-  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH-----HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH-----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH-
Confidence            3677888899999999999999999998  35432     3468889999986 7899999999999999998886543 


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC------------CCCCccHHH
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE------------DALDTEMNE  213 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~------------~~~d~~~~e  213 (285)
                          +.++.+..+|.+.++.++..|++++..++..+|+....+.  .+++.++.+|..-            ...++-.+.
T Consensus       179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~  252 (618)
T 1w63_A          179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV  252 (618)
T ss_dssp             ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred             ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence                4567778889889999999999999999987766544443  6788888877630            012677888


Q ss_pred             HHHHHHHHHHhcChH
Q psy355          214 HLLSALASLIKDSTE  228 (285)
Q Consensus       214 ~al~aL~~l~~~~~~  228 (285)
                      .++++|..+....|.
T Consensus       253 ~il~~L~~l~~~~~~  267 (618)
T 1w63_A          253 RILRLLRILGRNDDD  267 (618)
T ss_dssp             HHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999999999887765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.68  E-value=1e-06  Score=85.82  Aligned_cols=176  Identities=15%  Similarity=0.145  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      -.+..|+..|..+.. .+.+.     ..++.+.++|.++++.||..|+.+++++...+|..-     .++++.+..+|..
T Consensus       122 ~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D  190 (618)
T 1w63_A          122 FVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNE  190 (618)
T ss_dssp             HHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTC
T ss_pred             hHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCC
Confidence            445566666666552 22222     236788899999999999999999999999888522     2688888899984


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc---------------CcHHHHHHHHHHHHHHhcCCch
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS---------------KKEKLVIKSCFLIACLCTDNNQ  183 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~---------------~~~~v~~ka~~~l~~L~~~~~~  183 (285)
                       .++.|+..|+++|+.++..++.....|.  .-++.+++.|..               .++-+|.++..+++.++..+|.
T Consensus       191 -~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~  267 (618)
T 1w63_A          191 -KNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD  267 (618)
T ss_dssp             -CCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             -CCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH
Confidence             7899999999999999887665433443  445655555542               3566666666666666655432


Q ss_pred             HHH-------HH----------------------HH--------CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          184 VKQ-------VL----------------------LS--------MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       184 ~~~-------~l----------------------~~--------~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ...       .+                      ..        ..++..|..+|.++   ++.+|..++.+|..++...
T Consensus       268 ~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~---d~~vr~~aL~~L~~i~~~~  344 (618)
T 1w63_A          268 SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN---DKNIRYVALTSLLKTVQTD  344 (618)
T ss_dssp             HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS---STTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHhhC
Confidence            111       00                      00        13567888888888   9999999999999999888


Q ss_pred             hHHHh
Q psy355          227 TEAQS  231 (285)
Q Consensus       227 ~~~~~  231 (285)
                      |..+.
T Consensus       345 p~~~~  349 (618)
T 1w63_A          345 HNAVQ  349 (618)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            76553

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.66  E-value=2.8e-07  Score=78.80  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHhhcC-cch-HHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHH
Q psy355           38 KDICIGALDNLSDYVCS-IDY-ANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLL  113 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~-~dn-a~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~  113 (285)
                      -..|..|+..|..+++. .+. ..++.+  .++.|..+|. .+++.||..|+.++|.++..- +.....+  ..++|.|+
T Consensus        29 w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll  104 (242)
T 2qk2_A           29 WTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLL  104 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHH
Confidence            47888999999998865 111 112222  2567778884 899999999999999999631 1122222  23899999


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-Cch--HHHHHHH
Q psy355          114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQ--VKQVLLS  190 (285)
Q Consensus       114 ~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~--~~~~l~~  190 (285)
                      ..+.. ++..+|..|..||.+++...+.  ..     .++.+...|++.++.+|..++.+|..++.. +|.  ...++- 
T Consensus       105 ~~l~d-~~~~vr~~a~~aL~~~~~~~~~--~~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~-  175 (242)
T 2qk2_A          105 EKFKE-KKPNVVTALREAIDAIYASTSL--EA-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK-  175 (242)
T ss_dssp             HGGGC-CCHHHHHHHHHHHHHHHTTSCH--HH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH-
T ss_pred             HHHcC-CCHHHHHHHHHHHHHHHHcCCH--HH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH-
Confidence            99985 7789999999999999876432  22     357788899999999999999999997655 343  233443 


Q ss_pred             CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                       .+++.|+.+|..+   +..+|..|..++..+...-+
T Consensus       176 -~l~p~l~~~l~D~---~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          176 -LLTTSLVKTLNEP---DPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             -HHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHcC
Confidence             5889999999888   99999999999999886554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.60  E-value=3.8e-07  Score=78.93  Aligned_cols=180  Identities=13%  Similarity=0.125  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHH-hhcC-cch---HHHHHHcCCHHHHHhhh-cCCCHHHHHHHHHHHHHHhhCC--HHHH-HHHHhcCc
Q psy355           38 KDICIGALDNLSD-YVCS-IDY---ANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVADIVQNN--PFSQ-NFIIQTDF  108 (285)
Q Consensus        38 ~~~~~~al~~L~~-lv~~-~dn---a~~~~~~Gg~~~Lv~lL-~s~~~~vr~~A~~~lg~~a~nn--~~~q-~~v~~~g~  108 (285)
                      -.+|..|+..|.. ++++ .+.   ..++..  .+..|.+.| +.+++.|+..|+.+||.++.+-  +..+ .+..  -+
T Consensus        30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~l  105 (249)
T 2qk1_A           30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--LV  105 (249)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--HH
Confidence            4788999999999 8753 111   112222  256777788 6889999999999999999632  2222 3332  27


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc---hHH
Q psy355          109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---QVK  185 (285)
Q Consensus       109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~---~~~  185 (285)
                      +|.++..+.. +...|+..+..|+-+++...++....-.-...++.|...|+++++.+|..++.+|..++...+   ...
T Consensus       106 lp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l  184 (249)
T 2qk1_A          106 FTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL  184 (249)
T ss_dssp             HHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence            9999999985 678999999999999988653211000001245677888999999999999999998887644   222


Q ss_pred             HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      ...+...+++.|..++..+   +..+|+.|..+|..+...
T Consensus       185 ~~~l~~~iip~l~~~l~D~---~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          185 QRYLKDEVVPIVIQIVNDT---QPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             HHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHH
Confidence            2333357899999999888   999999999999988743

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.59  E-value=1e-06  Score=83.82  Aligned_cols=149  Identities=9%  Similarity=0.058  Sum_probs=114.7

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+|.+..+++++++.||..|+.++|.++...+.   .......+|.|..++.. ++..+|..|+.+|+.++...++.   
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~---  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQLLPQE---  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHHSCHH---
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCHH---
Confidence            356666778889999999999999999875432   12235688999988885 67899999999999988765432   


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      ......++.+..++++++.++|..|+.++..++..-+.   ......+++.+..++..+   ++.+|..++.+|..++..
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC---EAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHH
Confidence            12234678888888888999999999999998764211   122345789999999887   899999999999999876


Q ss_pred             Ch
Q psy355          226 ST  227 (285)
Q Consensus       226 ~~  227 (285)
                      .+
T Consensus       312 ~~  313 (588)
T 1b3u_A          312 LS  313 (588)
T ss_dssp             SC
T ss_pred             hC
Confidence            53

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.59  E-value=2.6e-06  Score=81.06  Aligned_cols=191  Identities=10%  Similarity=0.070  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355           19 NVGAELEKIIKTLKENQD-QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      ++....++.++.|....+ +++.+..+...|..++..+....  .....++.|..++.++++.||..|+.+|++++...+
T Consensus        42 ~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~  119 (588)
T 1b3u_A           42 GVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS  119 (588)
T ss_dssp             CHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC
Confidence            333444556666654433 34567777777776654322111  112345666677788999999999999999998765


Q ss_pred             HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355           98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus        98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      ..+   +..-.+|.+..+..+ ++..+|..|+..++.++.+.+...    ....++.+..+++++++.+|..|+.+++.+
T Consensus       120 ~~~---~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l  191 (588)
T 1b3u_A          120 PSD---LEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEF  191 (588)
T ss_dssp             HHH---HHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            421   222345555555543 455666666666666655443221    122345555666666666666666666666


Q ss_pred             hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      +...+..   .....+++.+..++..+   +..+|..|+.+|..+...
T Consensus       192 ~~~~~~~---~~~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~  233 (588)
T 1b3u_A          192 AKVLELD---NVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQL  233 (588)
T ss_dssp             HHTSCHH---HHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHH
T ss_pred             HHHhcHH---hHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHh
Confidence            5442211   11224455555555554   555666666665555543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.55  E-value=6.8e-08  Score=74.95  Aligned_cols=88  Identities=11%  Similarity=0.049  Sum_probs=74.4

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .++.|+.+|+++++.||..|+++||++..  +         ++++.|+.+|.+ ++..||..|+++|+.+.  .+     
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~--~~-----  103 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLED-DSGFVRSGAARSLEQIG--GE-----  103 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHC--SH-----
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--cH-----
Confidence            37999999999999999999999998762  2         258999999985 67899999999999974  22     


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC  176 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~  176 (285)
                          ..++.|+.+|++++..+|..|+++|..
T Consensus       104 ----~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          104 ----RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                346788899998899999999998764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.53  E-value=3e-06  Score=71.77  Aligned_cols=172  Identities=12%  Similarity=0.140  Sum_probs=135.5

Q ss_pred             CHHHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           37 QKDICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +...+..+|..|++++...|-.-+. .--.+++.+++++.+++..|-..|+++|+++..|.|-.-+.+.+  ++..|..+
T Consensus        46 D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dl  123 (265)
T 3b2a_A           46 DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSL  123 (265)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHH
Confidence            3467899999999999875433322 22346899999999999999999999999999998876666655  67888999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC--CchHHHHHHHCCc
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGM  193 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~g~  193 (285)
                      +.+ ++.-++..|+-.++.+ +-... ..     +.+..+.+++.|.+.++|.-+..++.+++..  ++...     .++
T Consensus       124 ik~-~~~il~~eaae~Lgkl-kv~~~-~~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~-----~~I  190 (265)
T 3b2a_A          124 LES-PDDMMRIETIDVLSKL-QPLED-SK-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL-----TLI  190 (265)
T ss_dssp             TTS-CCHHHHHHHHHHHHHC-CBSCC-CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG-----GGT
T ss_pred             hcC-CCchHHHHHHHHhCcC-Ccccc-hH-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH-----HHH
Confidence            985 7889999999999998 21111 11     2356778999999999999999999999863  34443     345


Q ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +.-+-.+|++.   |+.+++.|+.+|..+++..
T Consensus       191 ~~eI~elL~~e---D~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          191 LDEIPSLLQND---NEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             TTTHHHHHTCS---CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHHHHcCc
Confidence            56677889998   9999999999999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.51  E-value=1.9e-06  Score=85.94  Aligned_cols=180  Identities=12%  Similarity=0.176  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHhhc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~  117 (285)
                      ..+..|...|..++....  ..+. -..++.+...++++++.+|..|++++|.++.+.. ..-...+. .++|.|+..+.
T Consensus       346 ~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~  421 (861)
T 2bpt_A          346 NVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN  421 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence            355666666666654322  1111 1234566667889999999999999999997742 32222222 47899999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhH--HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-----chHHHHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECL--KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-----NQVKQVLLS  190 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~--~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-----~~~~~~l~~  190 (285)
                      . +++.+|..++|+|+.++....+..  ..+. ...++.++..|+++ ++++..|++++.+++..-     .....++  
T Consensus       422 d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--  496 (861)
T 2bpt_A          422 D-QSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--  496 (861)
T ss_dssp             C-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--
T ss_pred             C-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--
Confidence            5 688999999999999987532210  0111 23467888888776 999999999999998641     2222233  


Q ss_pred             CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ..+++.|+.++.+. +.+..+|..++.+|..++...+.
T Consensus       497 ~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          497 PALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcch
Confidence            24678888888864 11378999999999999987753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.51  E-value=3.1e-07  Score=91.75  Aligned_cols=179  Identities=13%  Similarity=0.205  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-H-HHHHHHhcCcHHHHHHhh
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-F-SQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~-~q~~v~~~g~l~~L~~LL  116 (285)
                      ..+..|...|..++....  ..+.. ..++.+...|.++++.+|..|++++|.++.+.+ . ....+  .+++|.|+..+
T Consensus       343 ~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l  417 (876)
T 1qgr_A          343 NPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM  417 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence            456666666666654322  11111 345666677889999999999999999998753 3 23222  45899999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhH--HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc------------
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECL--KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN------------  182 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~--~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~------------  182 (285)
                      .. ++..+|..|+|+|++++...++..  ..++ ...++.|+..|.++ .+++..|+|++.+++....            
T Consensus       418 ~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~  494 (876)
T 1qgr_A          418 KD-PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP  494 (876)
T ss_dssp             TC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred             CC-CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            85 678999999999999998765421  1111 24567788888775 9999999999999985411            


Q ss_pred             ---hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          183 ---QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       183 ---~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                         ....++  ..+++.|..++......+..++..++.+|..++...+
T Consensus       495 ~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~  540 (876)
T 1qgr_A          495 ATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA  540 (876)
T ss_dssp             CCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred             cchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence               122222  2467888888876522245788899999999887664

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.49  E-value=7e-07  Score=76.30  Aligned_cols=183  Identities=14%  Similarity=0.114  Sum_probs=128.2

Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      .+...+++.+...|..|+..|+.++.+++.....-. ..+++.|..++..+++..++..|+.+++.++.+-.+.+..+. 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence            477888999999999999999999987443110000 246778888885347899999999999999976444333332 


Q ss_pred             cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC-h
Q psy355          149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS-T  227 (285)
Q Consensus       149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~-~  227 (285)
                      ...++.|+..+.++...+|..|+.++..++...+ .      ..+++.+...|.+.   ++.+|+.++..|..++... |
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~---~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNK---NPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHcCC
Confidence            3467899999999999999999999999987643 1      13678888999988   9999999999999977654 3


Q ss_pred             HHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHH
Q psy355          228 EAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTE  270 (285)
Q Consensus       228 ~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~  270 (285)
                      ...     ....+..++......+.  +.+.++.+.+...+..
T Consensus       167 ~~~-----~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~  202 (242)
T 2qk2_A          167 TAL-----NKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGT  202 (242)
T ss_dssp             GGC-----CHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH
T ss_pred             CCc-----cHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH
Confidence            210     01122333333333443  2455566655555544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.48  E-value=6e-06  Score=69.99  Aligned_cols=188  Identities=16%  Similarity=0.191  Sum_probs=142.6

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+..|..+|...++.++.+|+.+|+.+...-|.......=...+|.++.++.+ ++..+..+|+-+|..+..|.|..-+.
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            47788999999999999999999999998644444444445689999999986 78999999999999999998887777


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      |.  .....+..++++++.-++..|+-.+..+---.+.       .+++..+..++.+.   |..++..++.+|.+++..
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Sk---d~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSP---DLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHGGG
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCC---ChhHHHHHHHHHHHhhcc
Confidence            76  4567888889999999999999999988211211       14667788888888   999999999999999976


Q ss_pred             ChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355          226 STEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDS  276 (285)
Q Consensus       226 ~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~  276 (285)
                      +.+       +. .+.....+.-+.++  +++....+++-.+++..++.+=
T Consensus       181 S~D-------~~-i~~~I~~eI~elL~--~eD~~l~e~aLd~Le~ils~pi  221 (265)
T 3b2a_A          181 SAD-------SG-HLTLILDEIPSLLQ--NDNEFIVELALDVLEKALSFPL  221 (265)
T ss_dssp             CSS-------CC-CGGGTTTTHHHHHT--CSCHHHHHHHHHHHHHHTTSCC
T ss_pred             cCC-------HH-HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCcc
Confidence            631       10 11111222222333  3577788888888888877653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.42  E-value=7.5e-06  Score=75.39  Aligned_cols=155  Identities=8%  Similarity=0.070  Sum_probs=109.1

Q ss_pred             CHHHHHhhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHHHHHHHHhhCChH
Q psy355           66 GLPVLQPLLEGS--DPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus        66 g~~~Lv~lL~s~--~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      .+|.|+.+++++  ++.+|..|+.+++.++... +..-.... ..+++.++.++.++. +..+|..|+.++++++.....
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345666778888  9999999999999999743 22111111 247888999998643 689999999999997653322


Q ss_pred             hHH--HHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          142 CLK--EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       142 ~~~--~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                      ...  .+. .-.++.+...+.+++..+|..+++++..++...+......+..++++.++..+...   +..++..++..+
T Consensus       208 ~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l  283 (462)
T 1ibr_B          208 NFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFW  283 (462)
T ss_dssp             HHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHH
T ss_pred             hhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHH
Confidence            111  011 11356666777888999999999999999876554322222226777788888777   889999999998


Q ss_pred             HHHHhc
Q psy355          220 ASLIKD  225 (285)
Q Consensus       220 ~~l~~~  225 (285)
                      ..+...
T Consensus       284 ~~~~~~  289 (462)
T 1ibr_B          284 SNVCDE  289 (462)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.41  E-value=1.6e-06  Score=80.03  Aligned_cols=182  Identities=8%  Similarity=0.094  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHH---------------
Q psy355           38 KDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN---------------  101 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~---------------  101 (285)
                      .+.+..++..|..+++.... -..+...+.++.++..+++.++.+|..|++.+++++........               
T Consensus       231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (462)
T 1ibr_B          231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  310 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccch
Confidence            46677777777777653211 00111114567777888899999999999999999864211100               


Q ss_pred             --HHHh---cCcHHHHHHhhccC------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHH
Q psy355          102 --FIIQ---TDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS  170 (285)
Q Consensus       102 --~v~~---~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka  170 (285)
                        .+++   ..++|.+++.+...      .+..+|..|+.+|+.++...+.   .++ ...++.+...|++++.++|..|
T Consensus       311 ~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aa  386 (462)
T 1ibr_B          311 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAA  386 (462)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHH
Confidence              0111   23677777777531      2347899999999999886653   222 2456788888999999999999


Q ss_pred             HHHHHHHhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          171 CFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       171 ~~~l~~L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +++++.++.+.. ......+ ..+++.++.+|..+   ++.+|..|+.+|..++...+
T Consensus       387 l~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~---~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          387 VMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP---SVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcc
Confidence            999999997643 2211112 46889999999988   99999999999999987654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.38  E-value=1.4e-05  Score=77.87  Aligned_cols=186  Identities=10%  Similarity=0.016  Sum_probs=140.7

Q ss_pred             CHHHHHHHHHHHH----h-ccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHH
Q psy355           19 NVGAELEKIIKTL----K-ENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI   92 (285)
Q Consensus        19 d~~~~mk~~l~~l----~-~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~   92 (285)
                      ++-+.+++-+..+    + ++..+...+..++..+.++.- ..|      -..|++.+++++.|++..+|..+.-.+..+
T Consensus        28 ~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~  101 (621)
T 2vgl_A           28 AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVL  101 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            4455555444433    3 222345778888888877642 122      124789999999999999999999999999


Q ss_pred             hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh--ccCcHHHHHHH
Q psy355           93 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI--QSKKEKLVIKS  170 (285)
Q Consensus        93 a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L--~~~~~~v~~ka  170 (285)
                      +..++..--.     ++..+.+=|.+ +++.+|.-|+.+||++.  .+.-.+     ..++.+.++|  .+.++-||++|
T Consensus       102 ~~~~~e~~~L-----~iN~l~kDl~~-~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A  168 (621)
T 2vgl_A          102 VNSNSELIRL-----INNAIKNDLAS-RNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSA  168 (621)
T ss_dssp             CCCCHHHHHH-----HHHHHHHHHHS-CCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHH
T ss_pred             ccCCcHHHHH-----HHHHHHHhcCC-CCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHH
Confidence            9988864322     35566666664 78999999999999983  344222     3457888999  78899999999


Q ss_pred             HHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       171 ~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      +.++..+....|+....   .++++.+..+|..+   |+.++..|+.+|..+...+|..
T Consensus       169 ~~al~kl~~~~p~~~~~---~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          169 ALCLLRLYRTSPDLVPM---GDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             HHHHHHHHHHCGGGCCC---CSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhChhhcCc---hhHHHHHHHHhCCC---CccHHHHHHHHHHHHHHhChHH
Confidence            99999999887765532   58999999999887   9999999999999999888753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.38  E-value=0.00038  Score=57.03  Aligned_cols=197  Identities=14%  Similarity=0.164  Sum_probs=138.6

Q ss_pred             HHHHHHHhc-CCHHHHH----HHHHHHHhccCCCH--HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-CCCHH
Q psy355            9 LLDALNSMM-VNVGAEL----EKIIKTLKENQDQK--DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-GSDPE   80 (285)
Q Consensus         9 L~~al~~~~-~d~~~~m----k~~l~~l~~~~~~~--~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-s~~~~   80 (285)
                      +++||+... .+++-.|    ++.++.+-..-++|  -....|+..+..+.+.......-    .+..|+-+++ |+.-.
T Consensus        10 ~realatge~~~eii~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep----l~~kL~vm~~ksEaIp   85 (253)
T 2db0_A           10 IREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIP   85 (253)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH----HHHHHHHHHHHCCSHH
T ss_pred             HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH----HHHHHHHHHhhcccCc
Confidence            677887764 3333222    12233222222333  36778888888888775432221    1334444443 67777


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355           81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ  160 (285)
Q Consensus        81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~  160 (285)
                      +-..-++++|.++.-+|..-     .+.+|.+..-..- .++.+|..-.|+|..|.|.||.....+     +.-+..++.
T Consensus        86 ltqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyri-gd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt  154 (253)
T 2db0_A           86 LTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRI-GDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS  154 (253)
T ss_dssp             HHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS
T ss_pred             hHHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhc-CCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc
Confidence            87788999999999999743     3468888877776 589999999999999999999865433     456677888


Q ss_pred             cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          161 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       161 ~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +++..=|..|..+|+.+-.+++   +++.  -++|.|..||...   |.-+|..+..+|.+++..+|.
T Consensus       155 skd~~Dkl~aLnFi~alGen~~---~yv~--PfLprL~aLL~D~---deiVRaSaVEtL~~lA~~npk  214 (253)
T 2db0_A          155 SKNREDKLTALNFIEAMGENSF---KYVN--PFLPRIINLLHDG---DEIVRASAVEALVHLATLNDK  214 (253)
T ss_dssp             CSSHHHHHHHHHHHHTCCTTTH---HHHG--GGHHHHHGGGGCS---SHHHHHHHHHHHHHHHTSCHH
T ss_pred             CCChHHHHHHHHHHHHHhccCc---cccC--cchHHHHHHHcCc---chhhhHHHHHHHHHHHHcCHH
Confidence            8887777777777776644443   4443  5899999999998   999999999999999999985

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.27  E-value=0.00011  Score=73.31  Aligned_cols=197  Identities=9%  Similarity=0.108  Sum_probs=126.9

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-H-HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYA-N-DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  104 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~-~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~  104 (285)
                      .+..+.+++.+.+.+..|+..|..++...... . .......++.+..++.++++++|..|+.+++.++...+..-...+
T Consensus       177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~  256 (876)
T 1qgr_A          177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM  256 (876)
T ss_dssp             HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33344444324567888888888877543211 0 000011366677788889999999999999999976654222223


Q ss_pred             hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh---------------------H----hHHHHH------------
Q psy355          105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE---------------------E----CLKEFI------------  147 (285)
Q Consensus       105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~---------------------~----~~~~f~------------  147 (285)
                      ...+++.++..+.+ .++.++..|+..++.+++...                     .    ....++            
T Consensus       257 ~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~  335 (876)
T 1qgr_A          257 GPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE  335 (876)
T ss_dssp             TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc
Confidence            33567777776654 456777777777766654210                     0    000000            


Q ss_pred             ---------------------h-------cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc-hHHHHHHHCCcHHHHH
Q psy355          148 ---------------------K-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMC  198 (285)
Q Consensus       148 ---------------------~-------~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~g~v~~L~  198 (285)
                                           .       ...++.+...+.+++.++|..|+++++.++.+.. ......+ .++++.++
T Consensus       336 d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~  414 (876)
T 1qgr_A          336 NDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI  414 (876)
T ss_dssp             SCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence                                 0       0123444556677889999999999999987643 3333333 34889999


Q ss_pred             HhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          199 VLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      ..|..+   ++.+|..++.+|.+++...+.
T Consensus       415 ~~l~d~---~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          415 ELMKDP---SVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHTCS---SHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHhCCC---CHHHHHHHHHHHHHHHHhCch
Confidence            999888   899999999999999987653

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=98.23  E-value=8.8e-06  Score=71.49  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=138.7

Q ss_pred             HHHHHHHHHhcc-C--CC-HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh--hhcCCCHHHHHHHHHHHHHHhhCC
Q psy355           23 ELEKIIKTLKEN-Q--DQ-KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP--LLEGSDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        23 ~mk~~l~~l~~~-~--~~-~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~--lL~s~~~~vr~~A~~~lg~~a~nn   96 (285)
                      ...++.+.+.++ .  .+ .+....||+.|.++.+++...-.+.... +..|-.  |..+.++.++..|+++||.+.+||
T Consensus        23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence            445566666664 1  22 3578899999999999999888877643 555544  345678899999999999999999


Q ss_pred             HHHHHHHHhc--CcHHH----HHHhhcc--CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHH
Q psy355           97 PFSQNFIIQT--DFLNL----LLTSIEH--DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKL  166 (285)
Q Consensus        97 ~~~q~~v~~~--g~l~~----L~~LL~~--~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v  166 (285)
                      |.+-..|.+.  ..+..    |..++..  .....+.+.-+++|..++...    ..| ...|+..|.+++...  +..+
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~  176 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQL  176 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHH
Confidence            9998888764  23332    3333321  134578888889999998865    224 366889999988877  9999


Q ss_pred             HHHHHHHHHHHhcC---Cc------hHHHHHH-----HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhh
Q psy355          167 VIKSCFLIACLCTD---NN------QVKQVLL-----SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL  232 (285)
Q Consensus       167 ~~ka~~~l~~L~~~---~~------~~~~~l~-----~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~  232 (285)
                      |.|+.-++..+...   ..      ..++.+-     .+++...+-.++... ..|.......-..|.+|-+..+..   
T Consensus       177 k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k-~~dE~~~r~fF~~L~~ik~~~~~~---  252 (315)
T 3qml_C          177 QIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQNK-SIDELHTRTFFDTLYNLKKIFKSD---  252 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHHGGG---
T ss_pred             HHHHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHhcccc---
Confidence            99999999988731   10      1111111     112555566666654 223334455567777776555322   


Q ss_pred             cccCcccHHHHHHH
Q psy355          233 CRLEPLNLKFKLNF  246 (285)
Q Consensus       233 ~~~~~~~l~~~l~~  246 (285)
                       ..+.-.|..||.+
T Consensus       253 -lK~~~~FLnWLa~  265 (315)
T 3qml_C          253 -ITINKGFLNWLAQ  265 (315)
T ss_dssp             -SCCCHHHHHHHHH
T ss_pred             -cCCCHHHHHHHHH
Confidence             3444578888874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.22  E-value=2.4e-05  Score=81.66  Aligned_cols=189  Identities=11%  Similarity=0.115  Sum_probs=137.2

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      ++.|++.+.+.+..+|..++.++|.++...+        ...+|.|.+.+.+ .++.+|..++.++..++.+.++.....
T Consensus       933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--------~~l~p~l~~~l~~-~~~~~R~~~~~~l~~~~~~~~~~~~~~ 1003 (1230)
T 1u6g_C          933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1003 (1230)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred             HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccCchhhHHH
Confidence            4555556666788899999999999998876        4588989888885 568899999999998887766544333


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC---------------CCCccH
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED---------------ALDTEM  211 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~---------------~~d~~~  211 (285)
                      +. .-++.++..|++++..+|+.|+.++..++...|+.....+. .+++.|...+...+               ....++
T Consensus      1004 l~-~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~-~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~ 1081 (1230)
T 1u6g_C         1004 LK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1081 (1230)
T ss_dssp             HH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred             HH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHH-HHHHHHHHHhcccHHhheeeccCCcccccCCcHHH
Confidence            31 22456677889999999999999999999887766544443 37777776654330               012379


Q ss_pred             HHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCc
Q psy355          212 NEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSL  277 (285)
Q Consensus       212 ~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~  277 (285)
                      |+.|..++..|+..+..        ...+.+++.+-+..+..+   .|+.-+|+.++.++......
T Consensus      1082 rk~a~~~~~~ll~~~~~--------~i~~~~~~~~~~~gl~d~---~di~~~~~~~l~~l~~~~~~ 1136 (1230)
T 1u6g_C         1082 RKAAFECMYTLLDSCLD--------RLDIFEFLNHVEDGLKDH---YDIKMLTFLMLVRLSTLCPS 1136 (1230)
T ss_dssp             HHHHHHHHHHHHHSSCS--------SSCHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHcccCch---HHHHHHHHHHHHHHHhcCHH
Confidence            99999999999987643        234566777766677642   56777888888887665443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.19  E-value=3.5e-06  Score=83.96  Aligned_cols=196  Identities=13%  Similarity=0.191  Sum_probs=128.9

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcC---------------CCHHHHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEG---------------SDPELRWRAAE   87 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s---------------~~~~vr~~A~~   87 (285)
                      |...+..+...+.+...+..++..+..++...... ..+.. ..+|.++..|..               ..+.+|..++.
T Consensus       500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  578 (861)
T 2bpt_A          500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT  578 (861)
T ss_dssp             HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence            33444444433322355667777777776543221 11111 245666666542               24578999999


Q ss_pred             HHHHHhhCCHH-HHHHHHhcCcHHHHHHhhccCCCH-HHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHH
Q psy355           88 TVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEK  165 (285)
Q Consensus        88 ~lg~~a~nn~~-~q~~v~~~g~l~~L~~LL~~~~~~-~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~  165 (285)
                      +|++++..-+. +...+  ...++.++.+++. .+. .+|..+++++++++.........++ ...++.|...+.+++..
T Consensus       579 ~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~  654 (861)
T 2bpt_A          579 VLAAVIRKSPSSVEPVA--DMLMGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSP  654 (861)
T ss_dssp             HHHHHHHHCGGGTGGGH--HHHHHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHhhhhhHHHH--HHHHHHHHHHHcc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHH
Confidence            99999976543 11111  2477888888886 334 7999999999999876544443343 23678888889878889


Q ss_pred             HHHHHHHHHHHHhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          166 LVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       166 v~~ka~~~l~~L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      ++..|+.+++.++..-. ....++  ..+++.+...|.++ +.+.++++.++.++..++...+
T Consensus       655 vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~  714 (861)
T 2bpt_A          655 VSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhh
Confidence            99999999999987533 333333  35677888888765 1248899999999999987654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.15  E-value=1.8e-05  Score=82.50  Aligned_cols=190  Identities=11%  Similarity=0.111  Sum_probs=129.9

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355           25 EKIIKTLKENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  103 (285)
Q Consensus        25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v  103 (285)
                      ...++.+.++  +.+.+..|+..|...+...-.. ..-.....++.|+..|.++++.+|..|+.+|++++...+.  ..+
T Consensus         9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~   84 (1230)
T 1u6g_C            9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV   84 (1230)
T ss_dssp             HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred             HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH
Confidence            3444444433  2467888888888765431000 0000112467888999999999999999999999986554  111


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh------HHHHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHH
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC------LKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIAC  176 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~------~~~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~  176 (285)
                        ..+++.|+..+.+ +++.+|..|+.+|+.++....+.      ...+ -...+|.|...+. +++.+++..|+.+++.
T Consensus        85 --~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             --HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence              2367888888875 45689999999999998765432      1112 2346789999998 5789999999999999


Q ss_pred             HhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          177 LCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       177 L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      ++...+ ....++  ..+++.|...|.++   ++.+|..++.+|..++...+
T Consensus       161 ~~~~~~~~l~~~~--~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          161 MLSRQGGLLVNFH--PSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHTCSSCTTTH--HHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHhHhHHHHHH--HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhcC
Confidence            985321 111111  24667788888877   88899999999998887654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.01  E-value=7.6e-06  Score=70.68  Aligned_cols=187  Identities=11%  Similarity=0.091  Sum_probs=126.6

Q ss_pred             HHhhhcCCCHHHHHHHHHHHHH-HhhCCHHHHHHHHh-cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh-HhHH-H
Q psy355           70 LQPLLEGSDPELRWRAAETVAD-IVQNNPFSQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE-ECLK-E  145 (285)
Q Consensus        70 Lv~lL~s~~~~vr~~A~~~lg~-~a~nn~~~q~~v~~-~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~-~~~~-~  145 (285)
                      +...++|++..-|..|+..|+. ++.+++.......+ ...+..|.+.+..+++..++..|+.+|+.++.+-. +.+. .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4556789999999999999999 88765542200001 13577788888556889999999999999997654 3333 3


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH--HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV--LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~--l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      +. .-.++.++..++.....++..+..++..++..-+.....  +  ..+++.|...|.+.   ++.+++.++.+|..++
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k---~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHK---TPQIRMECTQLFNASM  174 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCS---SHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCC---ChHHHHHHHHHHHHHH
Confidence            33 235789999999888999999999998888643111000  1  12667888999988   8999999999999999


Q ss_pred             hcChH---HHhhcccCcccH-HHHHHHHHHHccChHhhHHHHHHHHHHHHH
Q psy355          224 KDSTE---AQSLCRLEPLNL-KFKLNFIKEKHAGNEVYHKELEHVNSVLTE  270 (285)
Q Consensus       224 ~~~~~---~~~~~~~~~~~l-~~~l~~~~~~l~~~~e~~~~~~~~~~il~~  270 (285)
                      ...+.   .+..      .+ ..++....+-+.  +.+.+..+.+..++..
T Consensus       175 ~~~~~~~~~l~~------~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~  217 (249)
T 2qk1_A          175 KEEKDGYSTLQR------YLKDEVVPIVIQIVN--DTQPAIRTIGFESFAI  217 (249)
T ss_dssp             HHCCSCSHHHHH------HHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHH
T ss_pred             HHcCCcchhHHH------HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence            77652   2211      11 122332222332  3566677766666654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.95  E-value=0.00039  Score=67.66  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHhhCChHhHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI--EHDSNTTVQVKSLYAVSCLVRDNEECLK  144 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL--~~~~~~~v~~~a~~ALs~l~r~~~~~~~  144 (285)
                      +..+.+-|+++++-+|..|+++||++.  +|..-+     ..+|.+.++|  . +.++-||++|+.|+..+.+.+|....
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~~~~  184 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAG-DTMDSVKQSAALCLLRLYRTSPDLVP  184 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhChhhcC
Confidence            567777888999999999999999996  455333     3678888998  5 47899999999999999997775432


Q ss_pred             HHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355          145 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ  183 (285)
Q Consensus       145 ~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~  183 (285)
                         ..+.++.+.++|.++++.++..|+.++..++..+|.
T Consensus       185 ---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          185 ---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             ---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence               246789999999988999999999999999987764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.93  E-value=0.00049  Score=61.42  Aligned_cols=157  Identities=12%  Similarity=0.086  Sum_probs=122.3

Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355           69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK  148 (285)
Q Consensus        69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~  148 (285)
                      .++.-|.+++...+..|+.-|..+.+..+.....|++.||+..|++.... .+...+..++.|+.++.- +......++.
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchhC
Confidence            44555567778889999999999777777778889999999999999986 578999999999999865 6667777774


Q ss_pred             -cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH--------CC--cHHHHHHhcccCCCCCccHHHHHHH
Q psy355          149 -RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS--------MG--MVEQMCVLIDIEDALDTEMNEHLLS  217 (285)
Q Consensus       149 -~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~--------~g--~v~~L~~lL~~~~~~d~~~~e~al~  217 (285)
                       ...+..+..++.+.+..+.+.|.-++-.++...+.....+.+        .|  ....|+.+|...+..|.+++.+++.
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence             347788889999888999999999999988766533332221        22  3668899997322239999999999


Q ss_pred             HHHHHHhcCh
Q psy355          218 ALASLIKDST  227 (285)
Q Consensus       218 aL~~l~~~~~  227 (285)
                      .+-.++...|
T Consensus       280 LIN~lL~~ap  289 (339)
T 3dad_A          280 LINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHCS
T ss_pred             HHHHHHhcCC
Confidence            8888888776

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.90  E-value=0.00051  Score=62.25  Aligned_cols=187  Identities=13%  Similarity=0.104  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355           18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn   96 (285)
                      .|....+++ ...++++..+..-...++..+.++.-.-+ .....+ ...++.+++++.|++..+|.-.--.+.+++...
T Consensus        22 ~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~   99 (355)
T 3tjz_B           22 LEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA   99 (355)
T ss_dssp             CCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS
T ss_pred             chHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence            456667777 35666665544444557777777653322 111111 134667788999999999999999998888652


Q ss_pred             HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355           97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC  176 (285)
Q Consensus        97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~  176 (285)
                      +   +.+   =++..|.+=+.+ +++-+|..|+.++++|.-.  .-.+     ...+.+.++|.+.++-||++|+.++.+
T Consensus       100 ~---e~i---Lv~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~k  165 (355)
T 3tjz_B          100 E---DVI---IVTSSLTKDMTG-KEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLH  165 (355)
T ss_dssp             S---CGG---GGHHHHHHHHHS-SCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             H---HHH---HHHHHHHhhcCC-CcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            2   222   255666666775 6789999999999998543  2222     234678888999999999999999999


Q ss_pred             HhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          177 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       177 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      |....|+..+     ++++.+-.++...   ++-++-+|+.+|..+...++.
T Consensus       166 L~~~~pe~v~-----~~~~~l~~ll~d~---n~~V~~~Al~lL~ei~~~d~~  209 (355)
T 3tjz_B          166 LLKCSFDVVK-----RWVNEAQEAASSD---NIMVQYHALGLLYHVRKNDRL  209 (355)
T ss_dssp             HTTTCHHHHH-----TTHHHHHHHTTCS---SHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhccCHHHHH-----HHHHHHHHHhcCC---CccHHHHHHHHHHHHHhhchH
Confidence            9888887542     6888999999887   888888999999888876653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.76  E-value=0.00064  Score=68.64  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=102.4

Q ss_pred             CHHHHHhhhc-CCCHHHHHHHHHHHHHHh--hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355           66 GLPVLQPLLE-GSDPELRWRAAETVADIV--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC  142 (285)
Q Consensus        66 g~~~Lv~lL~-s~~~~vr~~A~~~lg~~a--~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~  142 (285)
                      .++.+++.|. +.+|-+|..|+.++|-..  ++|+.         ++..|+..+.++.+..+|..|+.+|+-+.-+.+..
T Consensus       542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~  612 (963)
T 4ady_A          542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT  612 (963)
T ss_dssp             GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence            5778888655 688999999888887543  44543         46667777666677899999999999988777633


Q ss_pred             HHHHHhcCcHHHHHH-hhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355          143 LKEFIKRDGFSVLLR-CIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS  221 (285)
Q Consensus       143 ~~~f~~~~gi~~L~~-~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~  221 (285)
                               ++.++. ++++.++.+|.-|+++++-++.+++..       .++..|..++..+   +..++..|+.+|..
T Consensus       613 ---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~---d~~Vrq~Ai~ALG~  673 (963)
T 4ady_A          613 ---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP---VDFVRQAAMIALSM  673 (963)
T ss_dssp             ---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS---SHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCC---CHHHHHHHHHHHHH
Confidence                     333444 455679999999999999998887632       2566777777777   99999999999999


Q ss_pred             HHhcChH
Q psy355          222 LIKDSTE  228 (285)
Q Consensus       222 l~~~~~~  228 (285)
                      +..+..+
T Consensus       674 Ig~gtnn  680 (963)
T 4ady_A          674 ILIQQTE  680 (963)
T ss_dssp             HSTTCCT
T ss_pred             HhcCCcc
Confidence            9877643

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.63  E-value=0.0015  Score=56.66  Aligned_cols=170  Identities=14%  Similarity=0.151  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh----hcCCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL----LEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDFL  109 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l----L~s~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l  109 (285)
                      -..+..|++.|...+++.  ...+.  .-+..+++.    +.++++.|...++.+|..+.+-    +......-. .-.+
T Consensus        60 ~k~~~~ale~L~~~l~~~--~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~l  134 (266)
T 2of3_A           60 FKQHLAALDSLVRLADTS--PRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFV  134 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHC--HHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHhhhC--hHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHH
Confidence            477888999998877642  22211  123333332    2367999999999999887531    111111100 1268


Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHH
Q psy355          110 NLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVL  188 (285)
Q Consensus       110 ~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l  188 (285)
                      |.|+.-+-. +.+.+|..+-..+-.+..-+|+.       ..++.+...+++.+.++|..++..+.++... +..     
T Consensus       135 P~LveKlGd-~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----  201 (266)
T 2of3_A          135 PYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----  201 (266)
T ss_dssp             HHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----
T ss_pred             HHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----
Confidence            999988875 56789888777665554433332       1345678899999999999999999999764 322     


Q ss_pred             HHCCcH---HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          189 LSMGMV---EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       189 ~~~g~v---~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                       ....+   +.++.++..+   |..+|..|+.++..+-....+.
T Consensus       202 -~~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDK---DVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHHHHHHHTTH
T ss_pred             -ccccccchHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHH
Confidence             13467   9999999998   9999999999998777655433

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.59  E-value=0.00028  Score=63.94  Aligned_cols=153  Identities=14%  Similarity=0.197  Sum_probs=82.9

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI  147 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~  147 (285)
                      +.+.++|.+.+|-||..|+.+...+...+|..-     .++++.+-.++.. .++.|...|+.++..+.++.+.+...++
T Consensus       142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kLv  215 (355)
T 3tjz_B          142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKMI  215 (355)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHHH
Confidence            345556667777777777777777777777632     2578888888874 6778888888888887765543322222


Q ss_pred             h---cCc-----------------------------HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          148 K---RDG-----------------------------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       148 ~---~~g-----------------------------i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      .   .+|                             ++.|...|++.+.-|.-+|+.+|.++....+.    .. ..++.
T Consensus       216 ~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~  290 (355)
T 3tjz_B          216 SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVS  290 (355)
T ss_dssp             HHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CCC
T ss_pred             HHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHH
Confidence            1   111                             12333344455566777777777666432211    11 23455


Q ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355          196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR  234 (285)
Q Consensus       196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~  234 (285)
                      .|..+|.++   ++.+|=.|++.|..++...|..+..|+
T Consensus       291 ~L~~fLss~---d~niryvaLr~L~~l~~~~P~~v~~~n  326 (355)
T 3tjz_B          291 VLQLFCSSP---KAALRYAAVRTLNKVAMKHPSAVTACN  326 (355)
T ss_dssp             THHHHHHSS---SSSSHHHHHHCC---------------
T ss_pred             HHHHHHcCC---CchHHHHHHHHHHHHHHHCcHHHHHHH
Confidence            666778888   899999999999999999998888774

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0019  Score=56.07  Aligned_cols=177  Identities=12%  Similarity=0.155  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhhcCcch--H--HHHHHcCCHHHH-HhhhcCCCHHHHHHHHHHHHHHhhCCHH-----HHHHHHhcCc
Q psy355           39 DICIGALDNLSDYVCSIDY--A--NDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPF-----SQNFIIQTDF  108 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dn--a--~~~~~~Gg~~~L-v~lL~s~~~~vr~~A~~~lg~~a~nn~~-----~q~~v~~~g~  108 (285)
                      ..|..|+++|..++.....  .  ..+...+.+..+ -+.+...+..++..|+.++..++..-..     ......-..+
T Consensus        24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (278)
T 4ffb_C           24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW  103 (278)
T ss_dssp             HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence            6889999999988765321  1  123334555444 4588889999999999999998864211     1111122457


Q ss_pred             HHHHHH-hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchH--
Q psy355          109 LNLLLT-SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV--  184 (285)
Q Consensus       109 l~~L~~-LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~--  184 (285)
                      +|.|+. .|.+ +...++..|..++..++....+.. .     .++.+...+++.+++++..++..|..++.. ++..  
T Consensus       104 l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~~~-~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~  176 (278)
T 4ffb_C          104 TPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTSIT-Q-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN  176 (278)
T ss_dssp             HHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSSSH-H-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCcHH-H-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            788875 4654 568899999988888765432221 1     135667788899999999999999888754 2111  


Q ss_pred             HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          185 KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       185 ~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ....+ ..+++.+..+|.+.   ++.+|+.|..++..+...-
T Consensus       177 ~k~~l-~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          177 VQTFL-PELLKHVPQLAGHG---DRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHH-HHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHTC-
T ss_pred             chhHH-HHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHh
Confidence            11111 13456677888888   9999999999998887654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.49  E-value=0.0028  Score=51.90  Aligned_cols=200  Identities=12%  Similarity=0.172  Sum_probs=143.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh---hcCcch----HHHHHH---------cCCH
Q psy355            5 NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ-KDICIGALDNLSDY---VCSIDY----ANDFLK---------MGGL   67 (285)
Q Consensus         5 ~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~-~~~~~~al~~L~~l---v~~~dn----a~~~~~---------~Gg~   67 (285)
                      +++||.+.+..+--|-+..-|.++.++.....+ ++-...++..|.-+   .+.|+-    |..|-.         -+.+
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV  109 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI  109 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence            678999999999666678888898888776654 34455555555444   233433    111110         1234


Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI  147 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~  147 (285)
                      |.+..=..-+++.+|..-..+|+.++.+||..--     +++.-+..++.+ ++..=|-.|+.-|+.+.-+++.-   + 
T Consensus       110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~y---v-  179 (253)
T 2db0_A          110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSS-KNREDKLTALNFIEAMGENSFKY---V-  179 (253)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHHH---H-
T ss_pred             HHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcC-CChHHHHHHHHHHHHHhccCccc---c-
Confidence            5555555678999999999999999999998654     356668889985 77777888888888886654432   2 


Q ss_pred             hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          148 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       148 ~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                       ..-+|.|..+|.+++.-+|..|.-++.+++.-+|..+..+.      .-+.-++..   +..+...+-.+|..|+-
T Consensus       180 -~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~---S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          180 -NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT---SSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             -GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS---CHHHHHHHHHHHHHHHH
T ss_pred             -CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc---HHHHHHHHHHHHHHHHH
Confidence             35678999999999999999999999999999998765443      233444555   67788888888877763

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.40  E-value=0.0051  Score=62.14  Aligned_cols=100  Identities=9%  Similarity=0.105  Sum_probs=80.5

Q ss_pred             HHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           67 LPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        67 ~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      +..|+. +..+++..||..|+..||-++-+++         ..+|.++.+|.++.++.+|..|++||+.++.|++..  .
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--~  647 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--S  647 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--H
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--H
Confidence            444444 3456788999999999999987775         368888888877788999999999999999988742  2


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                           .+..|..++++++..|++.|+++++-+..+++
T Consensus       648 -----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          648 -----AIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             -----HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             -----HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence                 24477788888899999999999999887644

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=97.28  E-value=0.02  Score=52.22  Aligned_cols=161  Identities=17%  Similarity=0.259  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhh--cCcchHHHHHHcCCHHHHHhhhc-----------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355           39 DICIGALDNLSDYV--CSIDYANDFLKMGGLPVLQPLLE-----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ  105 (285)
Q Consensus        39 ~~~~~al~~L~~lv--~~~dna~~~~~~Gg~~~Lv~lL~-----------s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~  105 (285)
                      +.....|..|.-.+  ..+++...|+ .+|+..|+..|.           ..+..++..++++|..+. |+..--+.+++
T Consensus        82 ~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~  159 (383)
T 3eg5_B           82 MHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLE  159 (383)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHc
Confidence            33344566666543  4578889998 899999999875           224578899999999888 66665566655


Q ss_pred             -cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh------HhHHHH------HhcCcHHHHHHhhcc-CcHHHHHHHH
Q psy355          106 -TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE------ECLKEF------IKRDGFSVLLRCIQS-KKEKLVIKSC  171 (285)
Q Consensus       106 -~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~------~~~~~f------~~~~gi~~L~~~L~~-~~~~v~~ka~  171 (285)
                       .+++..|...|.+ +.+.+++.|+--|+.+|.-..      ...+++      -+..-+..++..|.+ .+..++..+.
T Consensus       160 ~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m  238 (383)
T 3eg5_B          160 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL  238 (383)
T ss_dssp             CSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred             ChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH
Confidence             4688999999986 678999999999988876432      222222      123457889999987 5789999999


Q ss_pred             HHHHHHhcCCc------hHHHHHHHCCcHHHHHHhccc
Q psy355          172 FLIACLCTDNN------QVKQVLLSMGMVEQMCVLIDI  203 (285)
Q Consensus       172 ~~l~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~  203 (285)
                      .+|-.++.+.+      ..+..+...|+.+.+-. |+.
T Consensus       239 ~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~  275 (383)
T 3eg5_B          239 QLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE  275 (383)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence            99999988865      45677788888887766 444

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.16  E-value=0.0011  Score=68.11  Aligned_cols=140  Identities=11%  Similarity=0.061  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhC---ChHhHHHHHhc
Q psy355           77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRD---NEECLKEFIKR  149 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~----~~~~~v~~~a~~ALs~l~r~---~~~~~~~f~~~  149 (285)
                      ++-..+..|++++|.++.+-..-+..-.=..++|.|+.++.+    +....++..++|.||..++=   ++.    ++ .
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----~L-~  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----FL-R  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----HH-H
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----HH-H
Confidence            678999999999999997643222222223478889998864    12234556788999987652   332    22 2


Q ss_pred             CcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH------CCcHHHHHH----hcccCCCCCccHHHHHHHHH
Q psy355          150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCV----LIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       150 ~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~------~g~v~~L~~----lL~~~~~~d~~~~e~al~aL  219 (285)
                      ..+..|++.|..++++++..||+++.+||..   .+..++.      ...++.++.    .+..-   +..-+..+..++
T Consensus       540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l---~~~~~~~lyeai  613 (1023)
T 4hat_C          540 TVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADL---QPQQVHTFYKAC  613 (1023)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence            3456677788777899999999999999974   2233332      123444433    33323   566677888888


Q ss_pred             HHHHhcCh
Q psy355          220 ASLIKDST  227 (285)
Q Consensus       220 ~~l~~~~~  227 (285)
                      ..+++..|
T Consensus       614 ~~vi~~~~  621 (1023)
T 4hat_C          614 GIIISEER  621 (1023)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHhCC
Confidence            88888765

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=97.10  E-value=0.0086  Score=50.85  Aligned_cols=155  Identities=19%  Similarity=0.305  Sum_probs=106.2

Q ss_pred             HHHHHHHHhh--cCcchHHHHHHcCCHHHHHhhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCc
Q psy355           43 GALDNLSDYV--CSIDYANDFLKMGGLPVLQPLLEG----S-------DPELRWRAAETVADIVQNNPFSQNFIIQ-TDF  108 (285)
Q Consensus        43 ~al~~L~~lv--~~~dna~~~~~~Gg~~~Lv~lL~s----~-------~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~  108 (285)
                      .-+..|.-..  ..+++...| ..||+..|+.+|..    +       +...+..++.+|..+. |+..--+.++. .++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHH
Confidence            3444444432  457889999 57999999887762    1       4577889999999888 56655555655 468


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhhCC------hHhHHHHH------hcCcHHHHHHhhcc-CcHHHHHHHHHHHH
Q psy355          109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN------EECLKEFI------KRDGFSVLLRCIQS-KKEKLVIKSCFLIA  175 (285)
Q Consensus       109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~------~~~~~~f~------~~~gi~~L~~~L~~-~~~~v~~ka~~~l~  175 (285)
                      +..|...|.+ +++.+|+.++--|+.+|.-.      ....+++-      +..-+..+++.|.+ ++...+..+..+|-
T Consensus        98 i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN  176 (233)
T 2f31_A           98 ILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  176 (233)
T ss_dssp             HHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            8999999985 67899999887777766532      22222221      22356778888874 46888888888888


Q ss_pred             HHhcCCc------hHHHHHHHCCcHHHHHHh
Q psy355          176 CLCTDNN------QVKQVLLSMGMVEQMCVL  200 (285)
Q Consensus       176 ~L~~~~~------~~~~~l~~~g~v~~L~~l  200 (285)
                      .++.+.+      +.+..+...|+.+.+-.+
T Consensus       177 ~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l  207 (233)
T 2f31_A          177 ALITPAEELDFRVHIRSELMRLGLHQVLQEL  207 (233)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence            8888754      345666677776666544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=97.03  E-value=0.081  Score=48.28  Aligned_cols=160  Identities=19%  Similarity=0.289  Sum_probs=112.1

Q ss_pred             HHHHHHHHHh--hcCcchHHHHHHcCCHHHHHhhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHh-cC
Q psy355           42 IGALDNLSDY--VCSIDYANDFLKMGGLPVLQPLLEG----S-------DPELRWRAAETVADIVQNNPFSQNFIIQ-TD  107 (285)
Q Consensus        42 ~~al~~L~~l--v~~~dna~~~~~~Gg~~~Lv~lL~s----~-------~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g  107 (285)
                      ..-|..|.-.  ...+++...|. .||+..|+.+|..    +       +...+..++++|..+. |+..--+.++. .+
T Consensus        23 ~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~  100 (386)
T 2bnx_A           23 LSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE  100 (386)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSS
T ss_pred             HHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcH
Confidence            3344555443  24578899996 6899999887751    1       4578899999999888 55555555554 47


Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh-Hh-HHHHH----------hcCcHHHHHHhhcc-CcHHHHHHHHHHH
Q psy355          108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE-EC-LKEFI----------KRDGFSVLLRCIQS-KKEKLVIKSCFLI  174 (285)
Q Consensus       108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~-~~-~~~f~----------~~~gi~~L~~~L~~-~~~~v~~ka~~~l  174 (285)
                      ++..|...|.+ +.+.+++.++--|+.+|--.. .+ ...++          +..-+..+++.+.. .+..++..+..+|
T Consensus       101 ~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lI  179 (386)
T 2bnx_A          101 GILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLI  179 (386)
T ss_dssp             HHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence            89999999985 678899888877777665332 12 22221          23456788888884 5788999999999


Q ss_pred             HHHhcCCc------hHHHHHHHCCcHHHHHHhcccC
Q psy355          175 ACLCTDNN------QVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       175 ~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      ..++.+.+      ..+..+...|+.+.+-.+=...
T Consensus       180 N~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~  215 (386)
T 2bnx_A          180 NALITPAEELDFRVHIRSELMRLGLHQVLQELREIE  215 (386)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC
Confidence            99998865      4677888888888776554333

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.98  E-value=0.039  Score=51.44  Aligned_cols=126  Identities=12%  Similarity=0.127  Sum_probs=100.2

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH
Q psy355           76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL  155 (285)
Q Consensus        76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L  155 (285)
                      .+++..+..|+..|......-|..++.     ++..++.|+.. .+..||+.|+-.|..+|++  .....+     ..+|
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL  105 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCED-EDVSIRRQAIKELPQFATG--ENLPRV-----ADIL  105 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHH
Confidence            357999999999999999999998876     56779999995 6899999999999999997  333333     4688


Q ss_pred             HHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          156 LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       156 ~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      +++|++++..-..-+-..+..|...+|        .|.+..+...+.++   +..+|++++..|..-+..
T Consensus       106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~---~e~~Rer~lkFi~~kl~~  164 (507)
T 3u0r_A          106 TQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG---EDIVRERAIKFLSTKLKT  164 (507)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS---CHHHHHHHHHHHHHHGGG
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc---chHHHHHHHHHHHHHHhh
Confidence            999999887777777777777777665        34566666666667   889999999988765544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.95  E-value=0.013  Score=59.47  Aligned_cols=144  Identities=8%  Similarity=0.111  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-----CcHHH----HHHhhccC--CCHHHHHHHHHHHHHHhhCChHhHH
Q psy355           76 GSDPELRWRAAETVADIVQNNPFSQNFIIQT-----DFLNL----LLTSIEHD--SNTTVQVKSLYAVSCLVRDNEECLK  144 (285)
Q Consensus        76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~-----g~l~~----L~~LL~~~--~~~~v~~~a~~ALs~l~r~~~~~~~  144 (285)
                      +++...|..|..++|.++.+...+.. ....     ...+.    ++..|...  ..+-+|..|+|+|+.++...++  +
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~  492 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A  492 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H
Confidence            56778999999999999864210000 0000     12222    22334432  2789999999999998775432  1


Q ss_pred             HHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-------ch-----HHHHHHHCCcHHHHHHhcccCCC--CCcc
Q psy355          145 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-------NQ-----VKQVLLSMGMVEQMCVLIDIEDA--LDTE  210 (285)
Q Consensus       145 ~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-------~~-----~~~~l~~~g~v~~L~~lL~~~~~--~d~~  210 (285)
                       +. ...++.+++.|.+++..|+..|++++.+++...       +.     ...++  ..+++.|..++....+  ....
T Consensus       493 -~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l--~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          493 -QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST--EILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             -HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH--HHHHHHHHHHHHTTCCCHHHHT
T ss_pred             -HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH--HHHHHHHHHHHHhccCCCCccc
Confidence             21 245788888998889999999999999998731       11     11122  1355566666665300  0011


Q ss_pred             HHHHHHHHHHHHHhcC
Q psy355          211 MNEHLLSALASLIKDS  226 (285)
Q Consensus       211 ~~e~al~aL~~l~~~~  226 (285)
                      ..+.++.+|..++...
T Consensus       569 ~~e~l~~al~~vv~~~  584 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTS  584 (960)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            3356777777766543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.89  E-value=0.11  Score=45.79  Aligned_cols=205  Identities=14%  Similarity=0.150  Sum_probs=122.9

Q ss_pred             CCHHhHHHHHHHHHHhc------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHH---
Q psy355            1 MNEANRGFLLDALNSMM------VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQ---   71 (285)
Q Consensus         1 m~~e~~~~L~~al~~~~------~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv---   71 (285)
                      |+|++..=|++.++.+.      .++ ..+.-..+++   ....+.+..+++-|+-.+-..+-+.-|+..+.-..++   
T Consensus        77 Ls~~el~~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l  152 (304)
T 3ebb_A           77 LTEDDLILLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHL  152 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHH
Confidence            45666666666555432      111 1222222222   3445788899999998887666555555444333343   


Q ss_pred             -hhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH--hHHH
Q psy355           72 -PLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE--CLKE  145 (285)
Q Consensus        72 -~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~--~~~~  145 (285)
                       ..+. ...|..+.-++++++|+-.+ +..++.++..  .+++.+...+. +.+..+|..+...+-|++.....  ..+.
T Consensus       153 ~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          153 INLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence             3333 24577899999999999975 4456666542  24444444444 35788998888777777542110  0011


Q ss_pred             HHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHH
Q psy355          146 FIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL  215 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~a  215 (285)
                      -.  -.+..+..++.. .+.+..-++.-++++|+..+++.++.....|+-..+-+..+.+  ...++.+.+
T Consensus       231 ~~--~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~--~~~kv~~~~  297 (304)
T 3ebb_A          231 KA--QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS--EPAKVSECC  297 (304)
T ss_dssp             HH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC--SSHHHHHHH
T ss_pred             HH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC--CchhHHHHH
Confidence            00  023444455543 4788999999999999988777777777777777766666553  144455543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.85  E-value=0.31  Score=45.52  Aligned_cols=195  Identities=14%  Similarity=0.122  Sum_probs=117.0

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhhcCc----chHHHHHHcCCHHH-HH-hhhcCCCHHHHHHHHHHHHHHhhCCHH
Q psy355           25 EKIIKTLKENQDQKDICIGALDNLSDYVCSI----DYANDFLKMGGLPV-LQ-PLLEGSDPELRWRAAETVADIVQNNPF   98 (285)
Q Consensus        25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~----dna~~~~~~Gg~~~-Lv-~lL~s~~~~vr~~A~~~lg~~a~nn~~   98 (285)
                      +-.+..|..... ++...-.|.-+.+++...    ..+.-|.+...... +. .++..+++-....|+.+++-+++.++.
T Consensus        80 ~~~l~lL~~~~~-~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~  158 (480)
T 1ho8_A           80 IPLIHLLSTSDN-EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH  158 (480)
T ss_dssp             HHHHHHHHSCCC-HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred             HHHHHHHhhcCh-HHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence            445555555332 444445556666666552    33445666554432 33 345556667778888888888765544


Q ss_pred             HHHHHHhcCcHH--HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc--HHHHHHhhcc-------------
Q psy355           99 SQNFIIQTDFLN--LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG--FSVLLRCIQS-------------  161 (285)
Q Consensus        99 ~q~~v~~~g~l~--~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g--i~~L~~~L~~-------------  161 (285)
                      ..+.+  .+.+.  -++..|.+.++...+--++.+++.+.|. +.....|.+.+|  +++++.+++.             
T Consensus       159 ~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~  235 (480)
T 1ho8_A          159 NVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  235 (480)
T ss_dssp             CHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             cHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence            22221  11222  3445565422344466788889999884 556667877665  4555443321             


Q ss_pred             ---C-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH--HHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          162 ---K-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV--EQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       162 ---~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v--~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                         + ...++=.+++++--|+-. +.....+...++.  +.|+..++..  .-.++...++.+|.|++...
T Consensus       236 ~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s--~KEKvvRv~la~l~Nll~~~  303 (480)
T 1ho8_A          236 NSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKIT--IKEKVSRLCISIILQCCSTR  303 (480)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTSSS
T ss_pred             cCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhccc
Confidence               1 356677778877766554 4577888877754  6677777764  14678888888999998876

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.77  E-value=0.0093  Score=60.33  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=93.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355           75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF  152 (285)
Q Consensus        75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi  152 (285)
                      .+++...+..|+++||.++.+-...     ....++.++..+..  ++++.+|..++|+|+.++....... .++ ...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence            5678889999999999999763321     12334444443321  1467899999999999876322222 344 3678


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHHHhcCCchH-HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~-~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +.|+..|++  ++++..|++++.+++...+.. ..++  ..++..|..++..+ ..+...++.++.++..++...+
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCC
Confidence            888888864  799999999999999653221 1111  12444555566643 1245788999999999987553

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.55  E-value=0.056  Score=55.07  Aligned_cols=172  Identities=17%  Similarity=0.155  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCcHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~--nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      =..++.||..+..+++.....-...--..+|.+-.++-...++|...|..++..+|+  .|..+      ...+|.|++.
T Consensus       148 w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~  221 (986)
T 2iw3_A          148 WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQC  221 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHH
Confidence            378999999999999754222222222346666777778999999999999999887  34432      3579999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhC--ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC--CchHHHHHHHC
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRD--NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSM  191 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~--~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~  191 (285)
                      +.+ ++ . ..+++..||.-+--  -....-+++    +|+|.+.|......++++++-.+-|+|.-  +|.....++ -
T Consensus       222 ~~~-p~-~-~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~  293 (986)
T 2iw3_A          222 IAD-PT-E-VPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-G  293 (986)
T ss_dssp             HHC-TT-H-HHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-T
T ss_pred             hcC-hh-h-hHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-h
Confidence            996 33 3 56778888875432  111222333    68889999988999999999999999974  666666655 3


Q ss_pred             CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      ..+|.|-+....-  .+|+.|+.+..++..|.+.
T Consensus       294 ~l~p~~~~~~~~~--~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          294 KLLPGLKSNFATI--ADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             TTHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhhcc--CCHHHHHHHHHHHHHHHHh
Confidence            5666666655543  4899999999888888543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.53  E-value=0.0071  Score=61.39  Aligned_cols=138  Identities=9%  Similarity=0.073  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh---c-cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355           77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI---E-HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF  152 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL---~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi  152 (285)
                      ++...+..|+.++|.++.+-+...     ...++.++.++   . ++.++.+|..++|+|+.++.-..... .++ ...+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHH
Confidence            567799999999999998754322     23444444433   2 23478999999999999875311111 111 1345


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +.|+..| +  ++++..|++++.+++..-.....-.. .+++..+..++..+ ..+.+.++.++.++..++..-
T Consensus       549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          549 NLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHhC
Confidence            6677777 2  78999999999999975432222111 24556666777764 125678999999999998754

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.50  E-value=0.097  Score=53.95  Aligned_cols=214  Identities=14%  Similarity=0.119  Sum_probs=119.3

Q ss_pred             HHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----C
Q psy355            3 EANRGFLLDALNSMMVN-VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----S   77 (285)
Q Consensus         3 ~e~~~~L~~al~~~~~d-~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~   77 (285)
                      +.-|.|+..|+...... -+..|++.   +.+..-+..+...++..+...+. . +...      +..+..++++    .
T Consensus       339 ~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~-P-t~e~------l~~~~~l~~~~~~~~  407 (1056)
T 1lsh_A          339 KDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQ-A-TRES------LSYARELLNTSFIRN  407 (1056)
T ss_dssp             HHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCC-C-CHHH------HHHHHHHHTCHHHHT
T ss_pred             HHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCC-C-CHHH------HHHHHHHHhCccccc
Confidence            34577888888888522 24444444   45555455554444444333332 1 1222      3445556665    4


Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHH-HHhcCcHHHHHHhh----ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355           78 DPELRWRAAETVADIVQNNPFSQNF-IIQTDFLNLLLTSI----EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF  152 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~nn~~~q~~-v~~~g~l~~L~~LL----~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi  152 (285)
                      ++.++..|.-++|+++..  .|... ......++++.++|    .. .+..-+.-++.||+|+  |+|..         +
T Consensus       408 ~~~l~~ta~La~gslV~k--~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~--g~p~~---------l  473 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFR--YCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNA--GQPNS---------I  473 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--TCGGG---------H
T ss_pred             CHHHHHHHHHHHHHHHHH--HhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhcc--CChhH---------H
Confidence            678899999999988732  22210 11113355555544    43 4567788999999997  45543         4


Q ss_pred             HHHHHhhc-------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          153 SVLLRCIQ-------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       153 ~~L~~~L~-------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      +.|..++.       +...++|..|.|++..+....|...        -+.+..+..+. ..++++|-.|+..|   +..
T Consensus       474 ~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~-~e~~EvRiaA~~~L---m~t  541 (1056)
T 1lsh_A          474 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNV-AIKSELRIRSCIVF---FES  541 (1056)
T ss_dssp             HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCT-TSCHHHHHHHHHHH---HHT
T ss_pred             HHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCC-CCChHHHHHHHHHH---HHH
Confidence            44455553       2357899999999999987665332        23344555332 12778887777666   343


Q ss_pred             ChHH--Hh-----hcccCcccHHHHHHHHHHHccC
Q psy355          226 STEA--QS-----LCRLEPLNLKFKLNFIKEKHAG  253 (285)
Q Consensus       226 ~~~~--~~-----~~~~~~~~l~~~l~~~~~~l~~  253 (285)
                      +|..  +.     .-..+...+..++..+++.+..
T Consensus       542 ~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          542 KPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             CCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence            4421  10     1122333455556666665543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.45  E-value=0.012  Score=60.47  Aligned_cols=143  Identities=11%  Similarity=0.055  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355           77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF  152 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~----~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi  152 (285)
                      .+...+..|++++|.++.........-.-..+++.|+.+...    ++.+.++..++|++|.+++-..... .++ ...+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l-~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH-HHHH
Confidence            677899999999999986533221111112245555554432    1234555579999998764221111 222 2356


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH------CCcHH----HHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355          153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVE----QMCVLIDIEDALDTEMNEHLLSALASL  222 (285)
Q Consensus       153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~------~g~v~----~L~~lL~~~~~~d~~~~e~al~aL~~l  222 (285)
                      +.++..|.+++++|+..||+++.+++...   ...++.      ...++    .+..++...   +.+-...+..++..+
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~---~~~l~~~~~~~~~p~~~~il~~l~~~~~~~---~~~~~~~~~eai~~i  616 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADL---QPQQVHTFYKACGII  616 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCcHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence            77888888889999999999999999752   222220      12233    333444443   444566777888877


Q ss_pred             HhcCh
Q psy355          223 IKDST  227 (285)
Q Consensus       223 ~~~~~  227 (285)
                      +...+
T Consensus       617 i~~~~  621 (1049)
T 3m1i_C          617 ISEER  621 (1049)
T ss_dssp             HHTCC
T ss_pred             HHcCC
Confidence            76554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.41  E-value=0.039  Score=49.54  Aligned_cols=185  Identities=14%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      .....+++-|.-+.++.+-...|++..|+..+....+.++.++....+..+-.++....-|.--+  ...+|-++..+..
T Consensus       258 QVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~  335 (619)
T 3c2g_A          258 QVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhcc
Confidence            45667888888888887777789999999999999999999999999999987764322221111  3578888888876


Q ss_pred             CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-------CcHHHHHHHHHHHHHHhcC-----------
Q psy355          119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-------KKEKLVIKSCFLIACLCTD-----------  180 (285)
Q Consensus       119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-------~~~~v~~ka~~~l~~L~~~-----------  180 (285)
                      .++..+......-|||.+.|..+..+--+..|+++.|-..+..       .+..-+..||..++|-.+.           
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm  415 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT  415 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence            6778899999999999999998888888889999988766542       2445566777777765421           


Q ss_pred             --------Cc---hHHHHHHHCCcHHHHHHhcccCCCCC---ccHHHHHHHHHHHHHhc
Q psy355          181 --------NN---QVKQVLLSMGMVEQMCVLIDIEDALD---TEMNEHLLSALASLIKD  225 (285)
Q Consensus       181 --------~~---~~~~~l~~~g~v~~L~~lL~~~~~~d---~~~~e~al~aL~~l~~~  225 (285)
                              ++   .+...+++..+++.|+..|+.+.-+-   -++|...++...-++..
T Consensus       416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT  474 (619)
T 3c2g_A          416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT  474 (619)
T ss_dssp             TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC
Confidence                    11   34456677788888888887651111   24566666665555443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.40  E-value=0.14  Score=43.79  Aligned_cols=197  Identities=16%  Similarity=0.205  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHH-HHcCCHHHHHh-------hhcCCC--H--HHH-HHHHH
Q psy355           22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDF-LKMGGLPVLQP-------LLEGSD--P--ELR-WRAAE   87 (285)
Q Consensus        22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~-~~~Gg~~~Lv~-------lL~s~~--~--~vr-~~A~~   87 (285)
                      +.+-+.+..|.+++    .+..|+-+|..--++. |-|--+ +.-|.+..|+.       .|..+.  +  .-| ..|+.
T Consensus         3 ~~i~qli~~L~~p~----~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa   78 (268)
T 2fv2_A            3 EKIYQWINELSSPE----TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA   78 (268)
T ss_dssp             HHHHHHHHHTSSTT----THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCch----hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence            34455555555544    6889999999887775 444443 55666666643       222211  1  122 33444


Q ss_pred             HHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC----CHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC
Q psy355           88 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS----NTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK  162 (285)
Q Consensus        88 ~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~----~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~  162 (285)
                      .+-.+|+ +|+.+..|++++..-.|...|....    -+-+|-.++..|+.+++...+ .+.-+++...+|..++.|..+
T Consensus        79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G  157 (268)
T 2fv2_A           79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG  157 (268)
T ss_dssp             HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence            4455665 6778999999987666666666421    257888999999999986544 444455778899999999999


Q ss_pred             cHHHHHHHHHHHHHHhcCCchH------HHHH-HHCCcHHHHHH-hcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          163 KEKLVIKSCFLIACLCTDNNQV------KQVL-LSMGMVEQMCV-LIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       163 ~~~v~~ka~~~l~~L~~~~~~~------~~~l-~~~g~v~~L~~-lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +.-.|.-|+|.+..+...+...      .+.+ .-..++..++. +.+.+   ++.+..++.++-..|..+.
T Consensus       158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p---s~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP---SARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC---CHHHHHHHHHHHHHHTTSH
T ss_pred             cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhcCH
Confidence            9999999999999998764211      0111 11123434443 33455   7888999999998877554

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.31  E-value=0.0037  Score=58.37  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcC
Q psy355            6 RGFLLDALNSMMVNVGAELEKIIKTLKEN--------QDQKDICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEG   76 (285)
Q Consensus         6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~--------~~~~~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s   76 (285)
                      .=|-+.|.+ +..++++.+|..+++|...        +.+.....-|+.++.++|.-..+.+.+ -+.||=..++.|+.|
T Consensus       380 ~FW~ENa~k-f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          380 GFWSDNIDE-FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             HHHHHHSGG-GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC
T ss_pred             hHHHHHHHH-HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC
Confidence            447777744 5578999999999999753        122456888999999999887666654 678888899999999


Q ss_pred             CCHHHHHHHHHHHHHHhhCC
Q psy355           77 SDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn   96 (285)
                      ++++||..|+.++..+..+|
T Consensus       459 ~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          459 SDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             SSHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999887644

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=96.25  E-value=0.016  Score=46.80  Aligned_cols=120  Identities=14%  Similarity=0.131  Sum_probs=76.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHH
Q psy355           12 ALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVA   90 (285)
Q Consensus        12 al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg   90 (285)
                      ||-.+.......+.+.++..+++....++- ...-++.+++..- +.+.+     ++..|.+-|+++++.++..|+.+|-
T Consensus         2 ~mg~~~~~~~s~~~~~IekATs~~l~~~Dw-~~ileicD~I~~~~~~~k~-----A~ral~krl~~~n~~vql~AL~LLd   75 (171)
T 1juq_A            2 AMGSMAEAEGESLESWLNKATNPSNRQEDW-EYIIGFCDQINKELEGPQI-----AVRLLAHKIQSPQEWEALQALTVLE   75 (171)
T ss_dssp             ----------CCHHHHHHHHTCTTCSSCCH-HHHHHHHHHHHHSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             CcccCCCCCCCcHHHHHHHHcCCCCCCcCH-HHHHHHHHHHHcCCccHHH-----HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            444443222334667777777766433332 2222444444322 23333     3566777889999999999999999


Q ss_pred             HHhhCC-HHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhh
Q psy355           91 DIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        91 ~~a~nn-~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r  137 (285)
                      .++.|. +.++..|.+...+..|++++..     ..+..|+.+++..|-.-..
T Consensus        76 ~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           76 ACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            999995 5677788888999999999963     2467999998877766543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.23  E-value=0.6  Score=41.53  Aligned_cols=167  Identities=13%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC---cHHHHHHhhccCcHHHHHHHHHH
Q psy355           97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD---GFSVLLRCIQSKKEKLVIKSCFL  173 (285)
Q Consensus        97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~---gi~~L~~~L~~~~~~v~~ka~~~  173 (285)
                      +.+...++..+.+..+.+.+.. ++-.|...|...+-.+...|......|+..+   -+...-.+|.+++.-+|+.+.-+
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            3344455555555666666664 5678888888888888777777777888765   34566788999999999999999


Q ss_pred             HHHHhcC--CchH-HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC--hHHH-hhcccCcccHHHHHHHH
Q psy355          174 IACLCTD--NNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS--TEAQ-SLCRLEPLNLKFKLNFI  247 (285)
Q Consensus       174 l~~L~~~--~~~~-~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~--~~~~-~~~~~~~~~l~~~l~~~  247 (285)
                      |+.|...  +..+ .+++-+..-+..++.+|++.   ...++-.|.....-.+.+.  |+.+ .--...+-.|...+.  
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~---sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~--  307 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS--  307 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH--
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc---hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH--
Confidence            9999876  3333 34444556788999999998   8899988888877666443  1111 111111112222222  


Q ss_pred             HHHccC----hHhhHHHHHHHHHHHHHh
Q psy355          248 KEKHAG----NEVYHKELEHVNSVLTEV  271 (285)
Q Consensus       248 ~~~l~~----~~e~~~~~~~~~~il~~~  271 (285)
                        ..+.    .+++.+|-.+.-+-|+..
T Consensus       308 --~f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          308 --KFQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             --HTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             --hCCCCCcchhhHHHHHHHHHHHHHhC
Confidence              2221    235677777777766655

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.15  E-value=0.049  Score=55.31  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             HHhhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355           70 LQPLLEGS---DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        70 Lv~lL~s~---~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      ++..|+++   +|-||..|+|+||..+..-+  .+.+  ..+++.+++.|.+ ++..|+..|++||.+++..
T Consensus       460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQT-DEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             THHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTC
T ss_pred             hHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Confidence            34446666   99999999999999987521  1222  3478888888875 5789999999999998873

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.94  E-value=0.05  Score=55.16  Aligned_cols=131  Identities=15%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh---hc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL---LE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL  113 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l---L~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~  113 (285)
                      ..+..|+-.+.-+.+.......    ..++.++.+   |.  .+++.||..|+|+||..+.--....+.+  ..++|.|+
T Consensus       479 ~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~  552 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLV  552 (971)
T ss_dssp             HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHH
Confidence            4666777777777665432111    223333332   23  2489999999999999874211111111  13566677


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcC
Q psy355          114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       114 ~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~  180 (285)
                      ..|+    +.++..|++|+.++++........++ ...+..+..++..+  +.+.+..+..++..++..
T Consensus       553 ~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          553 RGLN----SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH----SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhC----hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            6663    46899999999999987765544443 23455666777763  578888888888888765

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.88  E-value=0.17  Score=51.07  Aligned_cols=176  Identities=15%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh---hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL---LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l---L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      ..+..++..+.-+.+......    ..-++.++..   +.++++.||..++|+||..+.--....+ .+ ..+++.|+..
T Consensus       464 ~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~  537 (963)
T 2x19_B          464 QHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHA  537 (963)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHH
Confidence            556667777776666543210    0112333332   2346899999999999998752111112 22 3688888888


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCc-hHHHHHHHCC
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNN-QVKQVLLSMG  192 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~g  192 (285)
                      |.+   +.|+..|++|+.++++..+.....++ ...++.|..++..+  +.+.+..+..+++.++..-+ +.....+ ..
T Consensus       538 l~~---~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~  612 (963)
T 2x19_B          538 LGN---PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HS  612 (963)
T ss_dssp             TTC---GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HH
T ss_pred             hCC---chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HH
Confidence            853   67999999999999986544321111 12234445555542  57888888888998887543 3333332 23


Q ss_pred             cHHHHHHhccc--CCCCCccHHH---HHHHHHHHHHhc
Q psy355          193 MVEQMCVLIDI--EDALDTEMNE---HLLSALASLIKD  225 (285)
Q Consensus       193 ~v~~L~~lL~~--~~~~d~~~~e---~al~aL~~l~~~  225 (285)
                      +++++...+..  .+..+++.+.   .++.+|..+.+.
T Consensus       613 l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~  650 (963)
T 2x19_B          613 LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT  650 (963)
T ss_dssp             HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            55555544432  0001333333   555666555543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=95.73  E-value=0.066  Score=42.83  Aligned_cols=105  Identities=14%  Similarity=0.099  Sum_probs=72.1

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHH
Q psy355           26 KIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFI  103 (285)
Q Consensus        26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v  103 (285)
                      +.++..+++....++-...+ ++.+++.. .+.+.+     ++..|.+-|++.++.++..|+.+|-.+++| .+.++..|
T Consensus        18 ~~IekATs~~~~~~Dw~~~l-eicD~I~~~~~~~ke-----A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev   91 (163)
T 1x5b_A           18 QDVEKATNEYNTTEDWSLIM-DICDKVGSTPNGAKD-----CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV   91 (163)
T ss_dssp             HHHHHHTCTTCSSCCHHHHH-HHHHHHHHSSSHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCHHHHH-HHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            55666666653322222222 33343322 233333     355677788999999999999999999998 47788788


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~  136 (285)
                      .....+..|++++....++.|+.+++..|-.-.
T Consensus        92 as~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           92 CSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             TSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            888899999999986567899999887665443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.29  Score=41.91  Aligned_cols=148  Identities=17%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HH-HHhcC-cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ--NF-IIQTD-FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC  142 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q--~~-v~~~g-~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~  142 (285)
                      +| |-.-|.|.+-..|..|...+..+.++++...  +. +...+ ..+.+-+.+. |++..+..+++.+|..++......
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhh
Confidence            44 5567899999999999999999888766432  11 11123 3344455665 689999999999999998753221


Q ss_pred             -----HHHHHhcCcHHHHH-HhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355          143 -----LKEFIKRDGFSVLL-RCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL  216 (285)
Q Consensus       143 -----~~~f~~~~gi~~L~-~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al  216 (285)
                           .....-...++.|+ ++|.++..+++..|..++..++...... .     -+++.+...+.+.   ++.++..++
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K---npkv~~~~l  160 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK---LPKLIAAAA  160 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS---CHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc---CHHHHHHHH
Confidence                 11111123456565 4678888999999888887776432111 0     1346667778888   999999999


Q ss_pred             HHHHHHHhc
Q psy355          217 SALASLIKD  225 (285)
Q Consensus       217 ~aL~~l~~~  225 (285)
                      ..|..++..
T Consensus       161 ~~l~~~l~~  169 (278)
T 4ffb_C          161 NCVYELMAA  169 (278)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.50  E-value=1  Score=38.50  Aligned_cols=166  Identities=17%  Similarity=0.189  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhccC---CC---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC-----HHHHHHHHHHH
Q psy355           21 GAELEKIIKTLKENQ---DQ---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD-----PELRWRAAETV   89 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~---~~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~-----~~vr~~A~~~l   89 (285)
                      +-.++|++.+...-+   -+   ......||.-|...+...+....|.+....-.|.++|+..+     .-+|-.++.+|
T Consensus        47 a~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVI  126 (268)
T 2fv2_A           47 AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVI  126 (268)
T ss_dssp             HHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHH
Confidence            566777777654433   23   24567888888999888999999999986667778887433     47999999999


Q ss_pred             HHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-------hc-CcHHHH-HHhh
Q psy355           90 ADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-------KR-DGFSVL-LRCI  159 (285)
Q Consensus        90 g~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-------~~-~gi~~L-~~~L  159 (285)
                      |.++. +++++-..+++.+++|..++.+.. .++--|.-|.+-+..|.-+ ..+...+.       .. ..+..+ ..+.
T Consensus       127 gaLvK~dd~eVi~fLL~tEiiplCLrime~-GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~  204 (268)
T 2fv2_A          127 GALVKTDEQEVINFLLTTEIIPLCLRIMES-GSELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLS  204 (268)
T ss_dssp             HHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCcHHHHHHHHhhhHHHHHHHHHhh-ccHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHh
Confidence            99987 677888889999999999999998 5678888999999888754 33332222       11 122222 2333


Q ss_pred             ccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355          160 QSKKEKLVIKSCFLIACLCTDNNQVKQVLL  189 (285)
Q Consensus       160 ~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~  189 (285)
                      +.+++++.+....+-..|+ .+|..++.+.
T Consensus       205 ~~ps~RLLKhiircYlRLs-dn~rar~aL~  233 (268)
T 2fv2_A          205 KEPSARLLKHVVRCYLRLS-DNPRAREALR  233 (268)
T ss_dssp             TSCCHHHHHHHHHHHHHHT-TSHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence            4567788777777666653 3454544443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.48  E-value=0.21  Score=51.48  Aligned_cols=177  Identities=16%  Similarity=0.165  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh----hhcCCCHHHHHHHHHHHHHH
Q psy355           19 NVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP----LLEGSDPELRWRAAETVADI   92 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~----lL~s~~~~vr~~A~~~lg~~   92 (285)
                      ...+.|+.....+..+.  .....+..++-.+..++...=.....|....++.+..    .+...+.+-+..++++|||+
T Consensus       388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            33566666666665543  2233344455555444422000001111222444444    34567788889999999998


Q ss_pred             hhCCHHHHHHHHhcCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc--cCcH
Q psy355           93 VQNNPFSQNFIIQTDFLNLLLTSIEH------DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ--SKKE  164 (285)
Q Consensus        93 a~nn~~~q~~v~~~g~l~~L~~LL~~------~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~--~~~~  164 (285)
                      ..  |         +.++.|.+++..      +....+|..|+|||..+....|...+.+        +..+..  ..+.
T Consensus       468 g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~i--------l~~i~~n~~e~~  528 (1056)
T 1lsh_A          468 GQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI--------VLPIFLNVAIKS  528 (1056)
T ss_dssp             TC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH--------HHHHHHCTTSCH
T ss_pred             CC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHH--------HHHHhcCCCCCh
Confidence            75  3         367788888742      2245788999999999998777655444        366663  4579


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .+|..|+.++-   ..+|+.       ..+..++..+..+  .+.++.-.+...|.+++...
T Consensus       529 EvRiaA~~~Lm---~t~P~~-------~~l~~ia~~l~~E--~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          529 ELRIRSCIVFF---ESKPSV-------ALVSMVAVRLRRE--PNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHH---HTCCCH-------HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHH---HHCcCH-------HHHHHHHHHHhhC--chHHHHHHHHHHHHHHHhcC
Confidence            99998887764   333422       3556666666653  26777777788888877666

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.46  E-value=0.11  Score=52.82  Aligned_cols=186  Identities=11%  Similarity=0.107  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH---H
Q psy355           22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP---F   98 (285)
Q Consensus        22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~---~   98 (285)
                      +.+++.++.+....  .++...|...+..++...-.... ...|.+..|.+.+....+.  +.|+.+++.+++..+   .
T Consensus        14 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~   88 (986)
T 2iw3_A           14 KVLEELFQKLSVAT--ADNRHEIASEVASFLNGNIIEHD-VPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS   88 (986)
T ss_dssp             HHHHHHHHHHTTCC--TTTHHHHHHHHHHHHTSSCSSSS-CCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT
T ss_pred             HHHHHHHhhccccc--hhHHHHHHHHHHHHHhccccccc-cchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC
Confidence            33444444443322  35566777777777653211111 1135667777777765444  999999999995432   2


Q ss_pred             HHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHH
Q psy355           99 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIAC  176 (285)
Q Consensus        99 ~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~  176 (285)
                      ..-+++  +.+|.++..+. ++...||..|-.|+-.++...++ +..     ..+|.|+..|+++ ....+.-|..++..
T Consensus        89 ~e~~~~--~~~~~~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~  160 (986)
T 2iw3_A           89 VEPYIV--QLVPAICTNAG-NKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSA  160 (986)
T ss_dssp             THHHHH--TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cccchH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            223333  68899999888 47789999999999999887555 442     3478999999876 58899999999999


Q ss_pred             HhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          177 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       177 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      |+...|.....-+ -.+||.+...+-..   .+++...+..++..++.
T Consensus       161 ~~~~~~~~~~~~~-~~~~p~~~~~~~d~---k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          161 MVDAAKDQVALRM-PELIPVLSETMWDT---KKEVKAAATAAMTKATE  204 (986)
T ss_dssp             HHHHSHHHHHHHH-HHHHHHHHHHTTCS---SHHHHHHHHHHHHHHGG
T ss_pred             HHHHhHHHHHHhc-cchhcchHhhcccC---cHHHHHHHHHHHHHHHh
Confidence            9876554433322 24677777776665   67777777777766654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.41  E-value=0.31  Score=41.26  Aligned_cols=142  Identities=10%  Similarity=0.026  Sum_probs=96.3

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh-CChHhHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR-DNEECLKEF  146 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r-~~~~~~~~f  146 (285)
                      +....|.+++..++|..|+.+||.. ...         ...++.+...+..+++=.||.-+..+++.++. -+|..    
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----  139 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----  139 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence            3444577889999999999999987 311         12566666656666777899999999999885 23331    


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                          -++.+....+++++.+|+-|.-.+.--+.. +..+...  .-+++.|..+...+   +--+|..+..+|..+.+.+
T Consensus       140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp--~~ll~iL~~L~~D~---s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP--NEAIRRIADLKEDV---SEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH--HHHHHHHHTTTTCS---CHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH--HHHHHHHHHhcCCh---HHHHHHHHHHHHHHHhhhC
Confidence                456778889999999999887665432221 1111000  01344555555554   6678888899999999999


Q ss_pred             hHHHhhc
Q psy355          227 TEAQSLC  233 (285)
Q Consensus       227 ~~~~~~~  233 (285)
                      |+.+...
T Consensus       210 Pd~V~~~  216 (240)
T 3l9t_A          210 PDLVKIE  216 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9876533

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=95.36  E-value=0.13  Score=40.33  Aligned_cols=71  Identities=10%  Similarity=0.042  Sum_probs=58.8

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHh
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~  136 (285)
                      ++..|.+-|+|+++.++..|+.+|-.++.| .+.++..+.+...+..|++++..     ..+..|+.+++..|-.-.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            356677778999999999999999999998 56788888888999999999974     246899999887666544

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=95.00  E-value=0.14  Score=43.07  Aligned_cols=107  Identities=12%  Similarity=0.181  Sum_probs=74.3

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~  101 (285)
                      +.+.++..+++..+.++-.. .-++.+++.. .+.+.+     ++..|.+-|++++|.++..|+.+|..+++|. +.++.
T Consensus         9 ~~~~i~kAT~~~~~~~dw~~-ileicD~I~~~~~~~k~-----a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~   82 (226)
T 3zyq_A            9 FERLLDKATSQLLLETDWES-ILQICDLIRQGDTQAKY-----AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHD   82 (226)
T ss_dssp             HHHHHHHHTCTTCSSCCHHH-HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHH-HHHHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence            44566667776643333222 2233333332 233433     3566777788999999999999999999984 44677


Q ss_pred             HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355          102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~  136 (285)
                      .|.+...+..|.+++...++..|+.+++..|-.-.
T Consensus        83 eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  117 (226)
T 3zyq_A           83 EVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA  117 (226)
T ss_dssp             HHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            78788888889999987677899999987776654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.97  E-value=0.13  Score=52.89  Aligned_cols=165  Identities=9%  Similarity=-0.027  Sum_probs=98.2

Q ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcC-----C
Q psy355            9 LLDALNSMM-VNVGAELEKIIKTLK----ENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEG-----S   77 (285)
Q Consensus         9 L~~al~~~~-~d~~~~mk~~l~~l~----~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s-----~   77 (285)
                      .++.|-.+. .+..+.++-.++.+.    +.+.+=..+..++..+.-+.+.++.. .+-.-...++.|+.++.+     +
T Consensus       433 ~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~  512 (1023)
T 4hat_C          433 EREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDN  512 (1023)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcc
Confidence            456665553 333455555555553    22233477888888888888876532 222222457788888764     3


Q ss_pred             CHHHHHHHHHHHHHHhh---CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh------
Q psy355           78 DPELRWRAAETVADIVQ---NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK------  148 (285)
Q Consensus        78 ~~~vr~~A~~~lg~~a~---nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~------  148 (285)
                      .+.|+..++|+||..+.   .+|..-     ..++..|+.-+. ++++.++..|+||+.++|..+..   .+..      
T Consensus       513 k~~v~~t~~~~lGry~~wl~~~~~~L-----~~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~  583 (1023)
T 4hat_C          513 KAVVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRES  583 (1023)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHCHHHH-----HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHH---HhhccCCCCC
Confidence            44566788899998654   233211     113333444443 35678999999999999986443   2321      


Q ss_pred             cCcHHH----HHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355          149 RDGFSV----LLRCIQSKKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       149 ~~gi~~----L~~~L~~~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      ..-++.    +...+..-+.+-+..+.-+++.++..-|
T Consensus       584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            111333    3333444467777888888998888744

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=94.90  E-value=0.77  Score=46.89  Aligned_cols=110  Identities=12%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCC---CHHHHHHHHHHHHHHhhCC
Q psy355           20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGS---DPELRWRAAETVADIVQNN   96 (285)
Q Consensus        20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~---~~~vr~~A~~~lg~~a~nn   96 (285)
                      +++.+.+++...-++..+.+.+..|.+-|..+=+..+         +|.....+|.++   ++.+|..|+.+|-+..+.-
T Consensus         4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l   74 (980)
T 3ibv_A            4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREW   74 (980)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            5778889998777887777888888888887765533         577777887653   7899999999999988732


Q ss_pred             HHH----HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355           97 PFS----QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        97 ~~~----q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~  138 (285)
                      +..    +...++.-++..+.+.-....+..+|.+.+.+++.++..
T Consensus        75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~  120 (980)
T 3ibv_A           75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ  120 (980)
T ss_dssp             CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            222    444555555555555211123468999999999988753

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=94.88  E-value=0.16  Score=42.55  Aligned_cols=107  Identities=10%  Similarity=0.095  Sum_probs=73.1

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~  101 (285)
                      +.+.++..+++..+.++-.. .-++.+++.. .+.+.+     ++..|.+-|+++++.++..|+.+|..++.|. +.++.
T Consensus         6 ~~~~ie~AT~~~~~~~dw~~-~leicd~i~~~~~~~k~-----a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~   79 (220)
T 1dvp_A            6 FCKNLENATSHLRLEPDWPS-ILLICDEINQKDVTPKN-----AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE   79 (220)
T ss_dssp             HHHHHHHHHCTTCSSCCHHH-HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHH-HHHHHHhhcCCCcCHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHH
Confidence            45666666676643222222 2224444432 233333     3456667788999999999999999999996 55777


Q ss_pred             HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355          102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~  136 (285)
                      .|.+...+..|++++...++..|+.+++..|-.-.
T Consensus        80 eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  114 (220)
T 1dvp_A           80 EVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA  114 (220)
T ss_dssp             HHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            78788899999999887667889988876655543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.80  E-value=1.6  Score=37.31  Aligned_cols=190  Identities=11%  Similarity=0.076  Sum_probs=120.1

Q ss_pred             HHHHHHhccCC-CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355           26 KIIKTLKENQD-QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII  104 (285)
Q Consensus        26 ~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~  104 (285)
                      +.++-|+.... ++++++..|....+++-..|. . +. -..++.++.+-..++.+||...+..|+.++...+...    
T Consensus        16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp-~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~----   88 (257)
T 3gs3_A           16 KVVDWCNELVIASPSTKCELLAKVQETVLGSCA-E-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL----   88 (257)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG-G-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH----
T ss_pred             HHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH-h-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH----
Confidence            34444554443 457999999999997654332 1 11 1236777777677899999999999999996554322    


Q ss_pred             hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH---------------HHHHHhhccCcHHHHHH
Q psy355          105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF---------------SVLLRCIQSKKEKLVIK  169 (285)
Q Consensus       105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi---------------~~L~~~L~~~~~~v~~k  169 (285)
                       ..+++.|..|+.. .++.|.++++.+.+++   ++...+.++..++.               ..++..+.+.+.-+|..
T Consensus        89 -~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~i---Y~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~  163 (257)
T 3gs3_A           89 -PHVINVVSMLLRD-NSAQVIKRVIQACGSI---YKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTN  163 (257)
T ss_dssp             -HHHHHHHHHHTTC-SCHHHHHHHHHHHHHH---HHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHH
T ss_pred             -HHHHHHHHHHHcC-CCHHHHHHHHHHHHHH---HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence             3468889999984 7899999999999988   45556656555441               24455666778888888


Q ss_pred             HHHHHHHHhc--C--C-------------------chH-HHHHH--HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355          170 SCFLIACLCT--D--N-------------------NQV-KQVLL--SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI  223 (285)
Q Consensus       170 a~~~l~~L~~--~--~-------------------~~~-~~~l~--~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~  223 (285)
                      |.-++..++.  .  .                   |-. ...+.  -.+.+..|+.++.++ .-+......++.+|..|+
T Consensus       164 ~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~-~iss~~l~a~lnsL~~Ia  242 (257)
T 3gs3_A          164 AIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTT-HISSVNLIACTSSLCTIA  242 (257)
T ss_dssp             HHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCT-TCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHHH
Confidence            8766665541  1  0                   000 11222  124556666665543 111223556677777777


Q ss_pred             hcChH
Q psy355          224 KDSTE  228 (285)
Q Consensus       224 ~~~~~  228 (285)
                      +.-|+
T Consensus       243 k~RP~  247 (257)
T 3gs3_A          243 KMRPI  247 (257)
T ss_dssp             HHCGG
T ss_pred             HhCcH
Confidence            66664

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.76  E-value=0.19  Score=38.99  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=70.8

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHH
Q psy355           26 KIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFI  103 (285)
Q Consensus        26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v  103 (285)
                      +.++..+++..+.++-.. .-++.+++.. .+.+.+     ++..|.+-|++.+|.++..|+.+|-.++.|. +.++..+
T Consensus         8 ~~iekAT~~~l~~~dw~~-ileicD~I~~~~~~~k~-----a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev   81 (140)
T 3ldz_A            8 QDVEKATSEMNTAEDWGL-ILDICDKVGQSRTGPKD-----CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV   81 (140)
T ss_dssp             HHHHHHTCTTSSSCCHHH-HHHHHHHHTTSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCHHH-HHHHHHHHHCCCcCHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            445555565533333222 2334444433 223333     3566777889999999999999999999985 5567777


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~  136 (285)
                      .+...+..|+++++. .++.|+.+.+..|-.-.
T Consensus        82 as~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           82 CSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             SSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence            777888889998875 67899999887776543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=94.67  E-value=2.5  Score=38.39  Aligned_cols=193  Identities=13%  Similarity=0.154  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      -+++-+.+.-.....  +++++..|..+.+++=..|. . +. -.-++.++.+-..++.+||...+..|+.++....+. 
T Consensus        24 ~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-s-Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el-   97 (386)
T 3o2t_A           24 SERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-T-LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL-   97 (386)
T ss_dssp             HHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-G-GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-
T ss_pred             HHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-H-HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH-
Confidence            344444554444422  36899999999997543332 1 11 245788899888899999999999999998644332 


Q ss_pred             HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH---------------HHHHHhhccCcHH
Q psy355          101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF---------------SVLLRCIQSKKEK  165 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi---------------~~L~~~L~~~~~~  165 (285)
                        +  ..+++.|..||. +.++.|.+.++.+.+++   ++..++.++..++.               ..++..+.+.+.-
T Consensus        98 --~--~~~l~~L~~LL~-d~d~~V~K~~I~~~tsl---Ypl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~G  169 (386)
T 3o2t_A           98 --L--LKLIANLNMLLR-DENVNVVKKAILTMTQL---YKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDG  169 (386)
T ss_dssp             --H--HHHHHHHHHHHT-CSSHHHHHHHHHHHHHH---HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHH
T ss_pred             --H--HHHHHHHHHHHc-CCCHHHHHHHHHHHHHH---HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcc
Confidence              2  336788888888 47899999999999887   45556555554441               2445567778888


Q ss_pred             HHHHHHHHHHHHhc--C----Cch---------------------HHHHHH--HCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355          166 LVIKSCFLIACLCT--D----NNQ---------------------VKQVLL--SMGMVEQMCVLIDIEDALDTEMNEHLL  216 (285)
Q Consensus       166 v~~ka~~~l~~L~~--~----~~~---------------------~~~~l~--~~g~v~~L~~lL~~~~~~d~~~~e~al  216 (285)
                      +|..|.-++..++.  .    ++.                     ....+.  -.+.+..|+..|..+ ..++.....++
T Consensus       170 Vrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~-~iss~~l~a~l  248 (386)
T 3o2t_A          170 IRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHP-AISSINLTTAL  248 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccc-ccccHHHHHHH
Confidence            88888866666541  1    100                     011222  235677788888764 11334555677


Q ss_pred             HHHHHHHhcChH
Q psy355          217 SALASLIKDSTE  228 (285)
Q Consensus       217 ~aL~~l~~~~~~  228 (285)
                      .+|..|++.-|+
T Consensus       249 nsLa~Iak~RP~  260 (386)
T 3o2t_A          249 GSLANIARQRPM  260 (386)
T ss_dssp             HHHHHHHHHSGG
T ss_pred             HHHHHHHHhcHH
Confidence            777777777764

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=94.35  E-value=0.42  Score=37.48  Aligned_cols=108  Identities=11%  Similarity=0.072  Sum_probs=73.3

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~  101 (285)
                      +.+.++..+++....++-. ..-++.+.+.. .+.+.+     ++..|.+-|+|++|.++..|+.+|-.+++|.. .++.
T Consensus        12 ~~~~IekATs~~l~~~dw~-~ileicD~I~~~~~~pk~-----a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~   85 (149)
T 3g2s_A           12 LEARINRATNPLNKELDWA-SINGFCEQLNEDFEGPPL-----ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD   85 (149)
T ss_dssp             HHHHHHHHSCTTCSSCCHH-HHHHHHHHGGGSSSHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHH-HHHHHHHHHHCCCCcHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4455566666664333322 23333344332 223333     35677777889999999999999999999754 4677


Q ss_pred             HHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhh
Q psy355          102 FIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r  137 (285)
                      .|.....+..|++++..     .++..|+.+.+..|-.-..
T Consensus        86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            78888899999999963     2568899998877776544

>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A

Probab=94.34  E-value=0.58  Score=43.02  Aligned_cols=184  Identities=10%  Similarity=0.072  Sum_probs=103.4

Q ss_pred             CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCH
Q psy355            1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDP   79 (285)
Q Consensus         1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~   79 (285)
                      ||+++..=|..++..+..+-.....-+++++..=.    .+..+++-|+.++-....+..      +..++. .+.+..+
T Consensus       207 ls~~el~~l~~~l~~~~~~~~~l~~~~~kil~~WP----~~FPaLDLLRl~v~~p~~~~~------l~~li~~~l~~~~~  276 (425)
T 3pst_A          207 FDDEILAQIGGALHDIDESWELLLSFANTIRSNWE----IKTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNI  276 (425)
T ss_dssp             CCHHHHHHHHHHHTSGGGSHHHHHHHHHHHHHHCS----CCHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSH
T ss_pred             CCHHHHHHHHHHhccccccHHHHHHHHHHHHHhCC----cccHHHHHHHHHHcCCchHHH------HHHHHHHhcCCCCh
Confidence            45666666666665443222222222333333211    478899999998877664433      222332 3446789


Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF  152 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi  152 (285)
                      ..+.-++++++|+-++...-++.+........++.++...       .+..++..+...+=|++.-....   -.+....
T Consensus       277 an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~---~~~~el~  353 (425)
T 3pst_A          277 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELL  353 (425)
T ss_dssp             HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS---CSCTTHH
T ss_pred             hHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence            9999999999999987653454443333456666665321       13455655555554544321100   0012234


Q ss_pred             HHHHHhhc---------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          153 SVLLRCIQ---------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       153 ~~L~~~L~---------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                      +.+..++.         ..+....-+++-++++|+...+..++....-.++...
T Consensus       354 ~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~~~~~~~  407 (425)
T 3pst_A          354 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANI  407 (425)
T ss_dssp             HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHH
Confidence            45666665         2477888889999999987666666554443344443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.32  E-value=0.19  Score=42.35  Aligned_cols=97  Identities=12%  Similarity=0.125  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC-----------cHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355          126 VKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK-----------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  193 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~-----------~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~  193 (285)
                      .+.+..|.-..|.+|. =.+.| ..+|+..|+..|..-           +...+..+..++..++.........+-..++
T Consensus        19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~   97 (233)
T 2f31_A           19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSH
T ss_pred             HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHH
Confidence            3445566555565544 46678 589999888887631           4677888999999998766555555556788


Q ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +..++..|.++   .+.++..++..|..++..+
T Consensus        98 i~~l~~~L~s~---~~~~r~~~leLL~~lc~~~  127 (233)
T 2f31_A           98 ILLLVRAMDPA---VPNMMIDAAKLLSALCILP  127 (233)
T ss_dssp             HHHHHTTCCTT---SHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhCCC---CchHHHHHHHHHHHHHhCC
Confidence            99999999988   8999999988887776543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.29  E-value=1.2  Score=45.63  Aligned_cols=139  Identities=9%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhH-HHHHhcCcHHHHHHh
Q psy355           81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECL-KEFIKRDGFSVLLRC  158 (285)
Q Consensus        81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~-~~f~~~~gi~~L~~~  158 (285)
                      .+..+..+|-.++...+..   ++. -+++.|-+.+.. ..+-..+..|+||+++++.+..... ..++ ...++.|..+
T Consensus       429 ~~~~~~~~L~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l  503 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHH
Confidence            4556777777777544421   111 123444444542 2456788999999999986543331 1222 1234444443


Q ss_pred             hc-----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          159 IQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       159 L~-----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      ..     .+.+.++..++|+++..+.--....+.+.  .+++.++..|..+   ++.++..|..++.+++..++..
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~---~~~V~~~A~~al~~l~~~~~~~  574 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHET---HEGVQDMACDTFIKIVQKCKYH  574 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence            32     13456666799999976532111112222  3566777778777   8999999999999999877644

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=94.24  E-value=0.34  Score=38.29  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-HHH
Q psy355           23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFS   99 (285)
Q Consensus        23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-~~~   99 (285)
                      .+.+.++..+++....++-...+ ++.+++.. .+.+.+     ++..|.+-|+ ++++.++..|+.+|-.++.|. +.+
T Consensus        16 ~~~~~IekATs~~l~~~Dw~~~l-eicD~I~~~~~~~k~-----a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f   89 (157)
T 1elk_A           16 PVGQRIEKATDGSLQSEDWALNM-EICDIINETEEGPKD-----ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF   89 (157)
T ss_dssp             HHHHHHHHHTCTTCSSCCHHHHH-HHHHHHHHSSSHHHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHcCCCCCCcCHHHHH-HHHHHHhCCCccHHH-----HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence            45667777777764333322222 33333322 233333     3556777787 589999999999999999996 778


Q ss_pred             HHHHHhcCcHHH-HHHhhcc--CCCHHHHHHHHHHHHHH
Q psy355          100 QNFIIQTDFLNL-LLTSIEH--DSNTTVQVKSLYAVSCL  135 (285)
Q Consensus       100 q~~v~~~g~l~~-L~~LL~~--~~~~~v~~~a~~ALs~l  135 (285)
                      +..+.+...+.. |++++..  .++..|+.+++..|-.-
T Consensus        90 h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W  128 (157)
T 1elk_A           90 HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW  128 (157)
T ss_dssp             HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence            888888889998 8898853  24568998888666554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.23  E-value=2.8  Score=37.23  Aligned_cols=151  Identities=13%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC---cHHHHHHh
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g---~l~~L~~L  115 (285)
                      +.-..+-.-|.+++..-..|.-+...+-+..+..+.+.++-+|-.-|..++-.+-+.++..-..++..+   .+...-+|
T Consensus       138 diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~L  217 (341)
T 1upk_A          138 EIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKL  217 (341)
T ss_dssp             TTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHH
Confidence            344455555666665555566666777788888999999999999999999999998887666666654   56677788


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhC--ChHhHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRD--NEECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLL  189 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~--~~~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~  189 (285)
                      |.+ ++-.+|+.++--||.+.-+  |......++.. .-+..++.+|++++..+|-+|-..+.-++.+   .+.+...++
T Consensus       218 l~S-~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~  296 (341)
T 1upk_A          218 LHS-ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL  296 (341)
T ss_dssp             TTC-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             hcC-CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence            887 6789999999999999865  55555566643 3578999999999999999999888877665   234444444


Q ss_pred             H
Q psy355          190 S  190 (285)
Q Consensus       190 ~  190 (285)
                      .
T Consensus       297 ~  297 (341)
T 1upk_A          297 K  297 (341)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}

Probab=94.23  E-value=0.16  Score=43.45  Aligned_cols=137  Identities=10%  Similarity=0.101  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355           40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH  118 (285)
Q Consensus        40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~  118 (285)
                      .+..++|-++-++-....+..+.      .++. .+.++++..+.-++++++|+-++....++.+........++..+.+
T Consensus        70 ~~fP~lDllRl~~~~~~~~~~l~------~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~  143 (253)
T 3gae_A           70 IKTPAYDIVRLIVKKLPYSSDIK------DYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT  143 (253)
T ss_dssp             CCHHHHHHHHHHGGGCSCGGGGH------HHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred             ccchHHHHHHHHHcCCchHHHHH------HHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence            57788898888876655443322      2332 3446788999999999999998766345555544344555554422


Q ss_pred             C-------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc---------CcHHHHHHHHHHHHHHhcCCc
Q psy355          119 D-------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS---------KKEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       119 ~-------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~---------~~~~v~~ka~~~l~~L~~~~~  182 (285)
                      .       .+..+|..+...+-|++.......   .+......++.++..         .+....-++.-++++|+..++
T Consensus       144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~---~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~  220 (253)
T 3gae_A          144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP  220 (253)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred             HhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence            1       245677777666666654211100   012234455555542         366777888888998887655


Q ss_pred             hHH
Q psy355          183 QVK  185 (285)
Q Consensus       183 ~~~  185 (285)
                      ..+
T Consensus       221 ~~~  223 (253)
T 3gae_A          221 TLR  223 (253)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            444

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.14  E-value=0.034  Score=47.56  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=13.1

Q ss_pred             HHHHhhhcCCCHHHHHHHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAET   88 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~   88 (285)
                      +.|..+++.+++.||..++..
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHh
Confidence            455556666666776666653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.99  E-value=0.23  Score=42.83  Aligned_cols=101  Identities=9%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      +|.|+.=+..+...||..+-.++-.++.--|.       ..+++.+++-+.+ ++.-+|..++..|++++..+-..    
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~----  201 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS----  201 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC----
Confidence            57888877888899999999888777642221       2367778888876 78899999999999987643222    


Q ss_pred             HhcCcH---HHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          147 IKRDGF---SVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       147 ~~~~gi---~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                       ...++   +.+..++.+.|..||..|..++..+...
T Consensus       202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence             23478   9999999999999999999988866543

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=93.79  E-value=1  Score=39.49  Aligned_cols=136  Identities=12%  Similarity=0.075  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC--cHH----
Q psy355           81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD--GFS----  153 (285)
Q Consensus        81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~--gi~----  153 (285)
                      --..|+..|-.++.. -+..-.+++.. .+.|-+++- ...++.++..|...|++..|+||++...+...-  -+.    
T Consensus        44 ~le~aLD~L~ElSHD-i~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHD-YKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTS-HHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh-HHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            345666666666643 33344444322 333434332 225678999999999999999999998776531  122    


Q ss_pred             HHHHhhcc---CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          154 VLLRCIQS---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       154 ~L~~~L~~---~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      -|..++..   ....++++-..+|..|+.....+.     ...+..|..++... ..+++++.+++..+..+..
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERN-NKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence            22232222   244666777788888877653332     33556666666543 3378999999998887774

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=93.61  E-value=2.5  Score=35.66  Aligned_cols=131  Identities=7%  Similarity=-0.016  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCcHHHHHHh
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~-nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      ++.+.-|...|..+ .  ....      .++.+.. +-..++-.||..++.+++.++. -+|.        ..++.+...
T Consensus        85 deVR~~Av~lLg~~-~--~~~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W  147 (240)
T 3l9t_A           85 YQVRMYAVFLFGYL-S--KDKE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEW  147 (240)
T ss_dssp             HHHHHHHHHHHHHT-T--TSHH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHH
T ss_pred             hHHHHHHHHHHHhc-c--CcHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHH
Confidence            46677777666655 2  1111      2455555 4446788999999999999885 4443        167778888


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh--cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM  191 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~--~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~  191 (285)
                      ..+ ++..||+.|+-.+-.-+.. +    .+..  .-.++.|..+..+++.-||+..+|.|..+...+|+....+++.
T Consensus       148 ~~d-~n~~VRR~Ase~~rpW~~~-~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~  219 (240)
T 3l9t_A          148 LKS-SNLHTRRAATEGLRIWTNR-P----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN  219 (240)
T ss_dssp             HHC-SSHHHHHHHHHHTCSGGGS-T----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             hcC-CCHHHHHHHHHhhHHHhcc-c----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence            875 7899999887655322221 1    1111  1145666666667789999999999999999999877776653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=93.59  E-value=0.045  Score=46.79  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=12.9

Q ss_pred             HHHHhhhcCCCHHHHHHHHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAET   88 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~   88 (285)
                      ..+..+++++++.||..|+..
T Consensus        77 ~~l~~L~~D~~~~VR~~aA~~   97 (244)
T 1lrv_A           77 EALTPLIRDSDEVVRRAVAYR   97 (244)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTT
T ss_pred             HHHHHHccCcCHHHHHHHHHH
Confidence            344556666677777666654

>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=93.55  E-value=0.61  Score=42.02  Aligned_cols=183  Identities=10%  Similarity=0.065  Sum_probs=100.5

Q ss_pred             CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCH
Q psy355            1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDP   79 (285)
Q Consensus         1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~   79 (285)
                      ||+|+..=+..++..+..+......-+.+++..  ..  .+..+++-|+.++-....+..      +..++. .+.+..+
T Consensus       144 ls~~el~~l~~~l~~~~~~~~~l~~~~~~i~~~--Wp--~~FP~LDLLRl~v~~~~~~~~------l~~li~~~~~~~~~  213 (362)
T 3l3f_X          144 FDDEILAQIGGALHDIDESWELLLSFANTIRSN--WE--IKTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNI  213 (362)
T ss_dssp             SCHHHHHHHHHHHTCTTTCHHHHHHHHHHHHHH--CS--CCHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSH
T ss_pred             CCHHHHHHHHHHHhcccccHHHHHHHHHHHHhh--CC--ccchHHHHHHHHhcCCChHHH------HHHHHHHhcCCCCh
Confidence            456666656666555433322222223333332  21  378899999988876654432      222332 3446789


Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355           80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF  152 (285)
Q Consensus        80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi  152 (285)
                      ..+.-++++++|+-++...-++.+........++..+...       .+..++..+...+=|++.-....   -.+....
T Consensus       214 ~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~---~~~~el~  290 (362)
T 3l3f_X          214 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELL  290 (362)
T ss_dssp             HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT---CSCTTHH
T ss_pred             hHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence            9999999999999987653444443222234455544211       13456666655555554321110   0012234


Q ss_pred             HHHHHhhc---------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          153 SVLLRCIQ---------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       153 ~~L~~~L~---------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      +.+..++.         ..+....-+++-++++|+..++..++....-.++..
T Consensus       291 ~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~~~~~~~  343 (362)
T 3l3f_X          291 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLAN  343 (362)
T ss_dssp             HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGGCHHHHH
T ss_pred             HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHH
Confidence            45666665         247788888999999998766655544433334443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.28  E-value=0.44  Score=43.32  Aligned_cols=111  Identities=10%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc-----------CcHHHHHHHHHHHHHHhc
Q psy355          112 LLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCT  179 (285)
Q Consensus       112 L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~-----------~~~~v~~ka~~~l~~L~~  179 (285)
                      ++..|.+.....--.+.+..|.--.|.+|.. .+.|+ .+|+..|+..|..           .+...+..+..++..+..
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN  149 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN  149 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence            3444444332222234566776666666554 57787 8899999998852           245788889999999987


Q ss_pred             CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          180 DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       180 ~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ........+-..+++..|+..|.++   .+.++..++..|..++...
T Consensus       150 ~~~G~~~vl~~~~~i~~l~~~L~s~---~~~~~~~aleLL~~lc~~~  193 (383)
T 3eg5_B          150 NKFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAAKLLSALCILP  193 (383)
T ss_dssp             SHHHHHHHHTCSSHHHHHHHTCCTT---SHHHHHHHHHHHHHHHTCC
T ss_pred             chhhHHHHHcChHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhCc
Confidence            6555555555668899999999988   8889998988887777544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=93.01  E-value=0.066  Score=51.08  Aligned_cols=205  Identities=12%  Similarity=0.092  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHhccCC----CH----HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHh
Q psy355           22 AELEKIIKTLKENQD----QK----DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIV   93 (285)
Q Consensus        22 ~~mk~~l~~l~~~~~----~~----~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a   93 (285)
                      +..-+.+.+|.-.-.    +|    -.|+.+.+.|.-+ -..+..     ...+..++..+..+.-++|..++-.|..+ 
T Consensus       218 DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-  290 (800)
T 3oc3_A          218 KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-  290 (800)
T ss_dssp             THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-
Confidence            445555555543331    11    3466666666655 332222     34566666666888999999999999987 


Q ss_pred             hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-Cc-HHHHHHHH
Q psy355           94 QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KK-EKLVIKSC  171 (285)
Q Consensus        94 ~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~-~~v~~ka~  171 (285)
                        .+...+   =.+++|.++.-|.. .++.||.-|+.+|..++  .+.....+     +..+..+|.+ +| ..-.....
T Consensus       291 --~DLL~~---Ld~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVM  357 (800)
T 3oc3_A          291 --KEFVED---KDGLCRKLVSLLSS-PDEDIKLLSAELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNL  357 (800)
T ss_dssp             --GGGCCC---HHHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHH
T ss_pred             --HHHHHH---HHHHHHHHHhhcCC-cccHHHHHHHHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHH
Confidence              111111   14577888888885 68899999999999998  34333333     3455566554 22 33334556


Q ss_pred             HHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc
Q psy355          172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH  251 (285)
Q Consensus       172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l  251 (285)
                      .+++.|++..+...   .....||.|-.+|.++   -+.+|..++.+|..++  ..              ..+....+++
T Consensus       358 dLLAkL~s~p~~a~---~dp~LVPRL~PFLRHt---ITSVR~AVL~TL~tfL--~~--------------~~LRLIFQNI  415 (800)
T 3oc3_A          358 SLLTKIYRENPELS---IPPERLKDIFPCFTSP---VPEVRTSILNMVKNLS--EE--------------SIDFLVAEVV  415 (800)
T ss_dssp             HHHHHHHHHCTTCC---CCSGGGGGTGGGGTCS---SHHHHHHHHHHTTTCC--CH--------------HHHHHHHHHH
T ss_pred             HHHHHHHcCCcccc---cChHHHHHHHhhhcCC---cHHHHHHHHHHHHHHH--hh--------------hHHHHHHHHH
Confidence            67777776543211   1237889999999999   9999999999998877  21              1222222232


Q ss_pred             cChHhhHHHHHHHHHHHH
Q psy355          252 AGNEVYHKELEHVNSVLT  269 (285)
Q Consensus       252 ~~~~e~~~~~~~~~~il~  269 (285)
                      - -++++++.+.+.+.+.
T Consensus       416 L-LE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          416 L-IEEKDEIREMAIKLLK  432 (800)
T ss_dssp             H-HCSCHHHHHHHHHHHH
T ss_pred             H-hCCcHHHHHHHHHHHH
Confidence            2 3456677777766664

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=92.62  E-value=1.1  Score=45.70  Aligned_cols=97  Identities=11%  Similarity=0.066  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHhhcCcch-HHHH-HHcCC----HHHHHhhhc-----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC
Q psy355           39 DICIGALDNLSDYVCSIDY-ANDF-LKMGG----LPVLQPLLE-----GSDPELRWRAAETVADIVQNNPFSQNFIIQTD  107 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dn-a~~~-~~~Gg----~~~Lv~lL~-----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g  107 (285)
                      .+++.++-.|..+.|.+.+ +..+ -....    ++.++.+++     .++|.||..++++||..+.--..      ...
T Consensus       458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~  531 (980)
T 3ibv_A          458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESA  531 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCT
T ss_pred             HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cch
Confidence            5677777777777666542 2111 00112    344455555     68899999999999997752111      124


Q ss_pred             cHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhhCChH
Q psy355          108 FLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus       108 ~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      .+|+++..+-+     ++++.|+..|++++.++|+....
T Consensus       532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            56666665543     35678999999999999987665

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.54  E-value=6.6  Score=34.30  Aligned_cols=203  Identities=13%  Similarity=0.157  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355           21 GAELEKIIKTLKENQDQ----KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~~~----~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn   96 (285)
                      .+.|.+-+.-++....+    .++-+.+++.+...+++... ..+ ....+..+.+++ +=.++.+.+++.++--++- +
T Consensus        57 ~~~i~~KL~EfN~~~~~~~~Ls~~el~~L~~l~~~l~~~s~-~~~-~~~~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~  132 (304)
T 3ebb_A           57 PTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSS-EKP-TVQQLQILWKAI-NCPEDIVFPALDILRLSIK-H  132 (304)
T ss_dssp             HHHHHHHHHHHHTTSCGGGCCCHHHHHHHHHHHHHHHTTCS-SCC-CHHHHHHHHHHH-TSCTTTCHHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHhccCC-Ccc-chHHHHHHHHHH-cCCHHhHHHHHHHHHHHHc-C
Confidence            44555555555554422    13444455555444332110 000 111356777776 5556788899999887775 6


Q ss_pred             HHHHHHHHhcCcHH----HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhc--CcHHHHHHhhccCcHHHHHHH
Q psy355           97 PFSQNFIIQTDFLN----LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR--DGFSVLLRCIQSKKEKLVIKS  170 (285)
Q Consensus        97 ~~~q~~v~~~g~l~----~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~--~gi~~L~~~L~~~~~~v~~ka  170 (285)
                      |.....+.+.+.-.    .++..+..+..+..+--++..++|+..+ +...+.+...  ..++.+..++.+++..+|..+
T Consensus       133 p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~  211 (304)
T 3ebb_A          133 PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIAL  211 (304)
T ss_dssp             HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHH
T ss_pred             ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence            77666665543323    3344454444566788899999999875 4444444432  234455555556789999999


Q ss_pred             HHHHHHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhc
Q psy355          171 CFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC  233 (285)
Q Consensus       171 ~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~  233 (285)
                      +.++.|++..   .+.. +...  .++..+..++...  .|.+..-.++-||++++...++....+
T Consensus       212 ATl~~NlAv~~~~~~~~-~~~~--~ll~~l~~il~~~--~d~EalyR~LvALGtL~~~~~~~~~la  272 (304)
T 3ebb_A          212 ATLALNYSVCFHKDHNI-EGKA--QCLSLISTILEVV--QDLEATFRLLVALGTLISDDSNAVQLA  272 (304)
T ss_dssp             HHHHHHHHHHHHHSCCH-HHHH--HHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCc-hHHH--HHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence            9999999753   1111 1111  1444555555543  378888999999999998776544444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=91.44  E-value=1.9  Score=40.17  Aligned_cols=126  Identities=10%  Similarity=0.102  Sum_probs=83.9

Q ss_pred             HHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCc
Q psy355           30 TLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF  108 (285)
Q Consensus        30 ~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~  108 (285)
                      +|.....+...+.-|-+-+..+... .+.++.     ++..++.|...++..||..|.+.|..+|.+ ..    +  ..+
T Consensus        34 Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~----i--~ki  101 (507)
T 3u0r_A           34 ILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN----L--PRV  101 (507)
T ss_dssp             HHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC----H--HHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh----h--hhH
Confidence            3333334556677777777666544 343333     578889999999999999999999999987 22    2  235


Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355          109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC  176 (285)
Q Consensus       109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~  176 (285)
                      ...|.+||.++ ++......-++|-.+.+-+|.+.        +..+...+.+++..+|.++.-+|+.
T Consensus       102 aDvL~QlLqtd-d~~E~~~V~~sL~sllk~Dpk~t--------l~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          102 ADILTQLLQTD-DSAEFNLVNNALLSIFKMDAKGT--------LGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHCHHHH--------HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-chHHHHHHHHHHHHHHhcChHHH--------HHHHHHHHcccchHHHHHHHHHHHH
Confidence            77899999974 55666666678888877665532        2222333333567777777766653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=91.01  E-value=0.63  Score=47.95  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHHhhCCH-HH-HHHHHhcCcHHHHHHhhccCC----CHHHHHHHHHHHHHHhh---CChHhHHHHH
Q psy355           77 SDPELRWRAAETVADIVQNNP-FS-QNFIIQTDFLNLLLTSIEHDS----NTTVQVKSLYAVSCLVR---DNEECLKEFI  147 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn~-~~-q~~v~~~g~l~~L~~LL~~~~----~~~v~~~a~~ALs~l~r---~~~~~~~~f~  147 (285)
                      .+......++|++|.++..-. .. ...+.  .+++.|+.|..+..    ..-++...+|.+|...+   .++.    |+
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~----~L  564 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK----FL  564 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH----HH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH----HH
Confidence            468899999999999985422 21 22232  36777888876532    12355556788888655   2333    22


Q ss_pred             hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355          148 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       148 ~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~  180 (285)
                       ...+..|++.+..+++.+|.-||.++..+|..
T Consensus       565 -~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          565 -KTVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             -HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence             23456777888888999999999999999865

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.53  E-value=1.4  Score=39.98  Aligned_cols=95  Identities=13%  Similarity=0.109  Sum_probs=70.1

Q ss_pred             HHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhcc-----------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          128 SLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       128 a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~-----------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      .+..|.-..|.+|. =.+.|. .+|+..|+..|..           .+...+..+..+|..++.........+-..+++.
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~  103 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL  103 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHH
Confidence            45555555565543 366785 7899888888752           1567888999999999887666666666678899


Q ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          196 QMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      .++..|.++   .+.++..++..|..++-.+
T Consensus       104 ~l~~sL~s~---~~~~r~~vleLL~alc~~~  131 (386)
T 2bnx_A          104 LLVRAMDPA---VPNMMIDAAKLLSALCILP  131 (386)
T ss_dssp             HHHHTCCTT---SHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCC---CchHHHHHHHHHHHHHcCC
Confidence            999999888   8888888888787766543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=90.01  E-value=1.9  Score=33.20  Aligned_cols=90  Identities=10%  Similarity=0.176  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED  205 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~  205 (285)
                      ...-.|+.+++..+.+.+     ..+..|.+-|.++++.++..|..++-.++.+ ++.+...+.+..++..|+.+++.. 
T Consensus        24 ~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-   97 (140)
T 3ldz_A           24 GLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-   97 (140)
T ss_dssp             HHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-
Confidence            345556677776554322     2345667778888999999998888877765 566777777778888888988777 


Q ss_pred             CCCccHHHHHHHHHHHHHh
Q psy355          206 ALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       206 ~~d~~~~e~al~aL~~l~~  224 (285)
                        ++.++++++..+..-..
T Consensus        98 --~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           98 --HPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             --CHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHHH
Confidence              89999999999887664

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=90.00  E-value=10  Score=39.38  Aligned_cols=107  Identities=7%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-h-cCCCHHHHHHHHHHHHHHhhC----
Q psy355           22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-L-EGSDPELRWRAAETVADIVQN----   95 (285)
Q Consensus        22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L-~s~~~~vr~~A~~~lg~~a~n----   95 (285)
                      ..+.+++..+-++..+.+.+..|-..|..+-.+.+         ++..+... . .+.++.+|..|+.++-+..+.    
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            34666776666665555668788777776644322         45555543 3 467899999999999998754    


Q ss_pred             -CHHHHHHHHhcCcHHHHHHhhccC--CCHHHHHHHHHHHHHHhhC
Q psy355           96 -NPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRD  138 (285)
Q Consensus        96 -n~~~q~~v~~~g~l~~L~~LL~~~--~~~~v~~~a~~ALs~l~r~  138 (285)
                       .+. +...++..++..+.+.-...  .+..+|.+.+.+|+.|++.
T Consensus        82 l~~e-~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~  126 (1204)
T 3a6p_A           82 MSRL-EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR  126 (1204)
T ss_dssp             SCHH-HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence             333 44445555555554432211  3578999999999998764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=89.79  E-value=5  Score=41.32  Aligned_cols=113  Identities=8%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             cHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC---c--HHHHHHHHHHHHHHhc-
Q psy355          108 FLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK---K--EKLVIKSCFLIACLCT-  179 (285)
Q Consensus       108 ~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~---~--~~v~~ka~~~l~~L~~-  179 (285)
                      .++.|-+.++. ..+-.....++||+++|+..-.+ ..+.|+ -..++.|+.+...+   +  ..++...+|+++.... 
T Consensus       478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w  556 (1073)
T 3gjx_A          478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF  556 (1073)
T ss_dssp             HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence            44555555553 23467889999999999854332 233444 24566777666543   3  3455556688876543 


Q ss_pred             --CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          180 --DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       180 --~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                        .++....     .++..|...+..+   ++.+++.|..|+..|++.|+..
T Consensus       557 l~~h~~~L~-----~vl~~L~~~m~~~---~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          557 LRAHWKFLK-----TVVNKLFEFMHET---HDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHCHHHHH-----HHHHHHHHHTTCC---STTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHhCHHHHH-----HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHH
Confidence              2333222     3455666767766   8999999999999999999754

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A

Probab=87.38  E-value=8.6  Score=29.76  Aligned_cols=93  Identities=14%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----C-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHH
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----G-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL  112 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L  112 (285)
                      -.++.-|......+...+....|.+.|.+..+-.-|.     | |+..||...+.+|.++=    -.++.+.+.|....+
T Consensus        35 ~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv  110 (145)
T 2xpp_A           35 TGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIV  110 (145)
T ss_dssp             CHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHH
T ss_pred             HHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcch
Confidence            4678888888888888899999999999988877666     2 77899999999999873    236678888877777


Q ss_pred             HHhhccC-CCHHHHHHHHHHHHHH
Q psy355          113 LTSIEHD-SNTTVQVKSLYAVSCL  135 (285)
Q Consensus       113 ~~LL~~~-~~~~v~~~a~~ALs~l  135 (285)
                      .-+-++. ..+..|+.|-.-+..-
T Consensus       111 ~~l~k~~~et~~nk~la~~Li~~W  134 (145)
T 2xpp_A          111 YFYSINPKESKEVRASAKALVQKW  134 (145)
T ss_dssp             HHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred             hhhhcCCccCHHHHHHHHHHHHHH
Confidence            6666542 3457777776555543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=84.48  E-value=2.9  Score=33.06  Aligned_cols=91  Identities=11%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             HHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCC
Q psy355          129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDAL  207 (285)
Q Consensus       129 ~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~  207 (285)
                      .-.|+.+++..+...+     ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++...  .
T Consensus        36 ~leicD~I~~~~~~~k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~--~  108 (163)
T 1x5b_A           36 IMDICDKVGSTPNGAK-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK--A  108 (163)
T ss_dssp             HHHHHHHHHHSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC--C
Confidence            3445555554433222     1334666777888999999999998888776 677777888888999999988752  2


Q ss_pred             CccHHHHHHHHHHHHHhcC
Q psy355          208 DTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       208 d~~~~e~al~aL~~l~~~~  226 (285)
                      ++.++++++..+..-....
T Consensus       109 ~~~Vk~kil~li~~W~~~f  127 (163)
T 1x5b_A          109 HPKVCEKLKSLMVEWSEEF  127 (163)
T ss_dssp             CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            7899999999887766443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.19  E-value=3.8  Score=31.86  Aligned_cols=94  Identities=10%  Similarity=0.065  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC--
Q psy355          128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE--  204 (285)
Q Consensus       128 a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~--  204 (285)
                      ..-.|+.+++..+...+     ..+..|.+-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...  
T Consensus        21 ~~leicD~I~~~~~~~k-----~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~   95 (148)
T 1mhq_A           21 AIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYL   95 (148)
T ss_dssp             HHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTT
T ss_pred             HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccC
Confidence            34455666655443222     2345677778899999999999999988876 777888888889999999998741  


Q ss_pred             -CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 -DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 -~~~d~~~~e~al~aL~~l~~~~  226 (285)
                       ...+..++++++..+..-....
T Consensus        96 ~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           96 GSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHc
Confidence             1126789999999887766443

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=83.88  E-value=5.6  Score=33.13  Aligned_cols=93  Identities=10%  Similarity=0.218  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED  205 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~  205 (285)
                      .....|+.+++..+...+     ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|..+++.. 
T Consensus        27 ~~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~-  100 (226)
T 3zyq_A           27 ESILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ-  100 (226)
T ss_dssp             HHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC-
Confidence            345556666665433221     2345677778889999999999999888876 666777777888888888888653 


Q ss_pred             CCCccHHHHHHHHHHHHHhcC
Q psy355          206 ALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       206 ~~d~~~~e~al~aL~~l~~~~  226 (285)
                       .+..++++++..+.......
T Consensus       101 -~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A          101 -VEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHHHHHh
Confidence             36789999999998876543

>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}

Probab=83.69  E-value=12  Score=33.11  Aligned_cols=47  Identities=15%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHhhCChHhHHH----------------HHhcCcHHHHHHhhccCcHHHHH
Q psy355          122 TTVQVKSLYAVSCLVRDNEECLKE----------------FIKRDGFSVLLRCIQSKKEKLVI  168 (285)
Q Consensus       122 ~~v~~~a~~ALs~l~r~~~~~~~~----------------f~~~~gi~~L~~~L~~~~~~v~~  168 (285)
                      +..|...++.|+++-.-+|...+.                +-..||+..+..+|..-+.....
T Consensus       154 ~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~  216 (329)
T 3hjl_A          154 EELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRE  216 (329)
T ss_dssp             HHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHH
Confidence            456666666666665444443221                22468998888888765554444

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=83.14  E-value=1.7  Score=41.68  Aligned_cols=141  Identities=11%  Similarity=0.097  Sum_probs=94.6

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH--HhcCcHHHHHHhhccC---------CCHHHHHHHHHHHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI--IQTDFLNLLLTSIEHD---------SNTTVQVKSLYAVSCL  135 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v--~~~g~l~~L~~LL~~~---------~~~~v~~~a~~ALs~l  135 (285)
                      +..|+.-|-++.-++|.-||-+|..+...........  ......-.|+-+|.-|         .-.-||+.|+.+|+.+
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL  255 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI  255 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence            4456666779999999999999999875432110000  0113344444443321         1236999999999999


Q ss_pred             hhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHH
Q psy355          136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL  215 (285)
Q Consensus       136 ~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~a  215 (285)
                       .+-|+.      ...+..++..+..+.-.+|--+...|.++    .+....+  .++++.++..|...   |.+++..|
T Consensus       256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~L--d~Vv~aVL~GL~D~---DDDVRAVA  319 (800)
T 3oc3_A          256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDK--DGLCRKLVSLLSSP---DEDIKLLS  319 (800)
T ss_dssp             -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCH--HHHHHHHHHHTTCS---SHHHHHHH
T ss_pred             -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHH--HHHHHHHHhhcCCc---ccHHHHHH
Confidence             766654      34555555666777889999888888888    1111112  36778888888888   89999999


Q ss_pred             HHHHHHHH
Q psy355          216 LSALASLI  223 (285)
Q Consensus       216 l~aL~~l~  223 (285)
                      +.+|.-++
T Consensus       320 AetLiPIA  327 (800)
T 3oc3_A          320 AELLCHFP  327 (800)
T ss_dssp             HHHHTTSC
T ss_pred             HHHhhhhc
Confidence            99998877

>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}

Probab=82.71  E-value=7.4  Score=30.33  Aligned_cols=110  Identities=15%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCC-HHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNN-PFSQ  100 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn-~~~q  100 (285)
                      +.+.++..+++.-+.++-...+ ++.+++.. .+.+.+     ++..|.+-|++ +++.++..|+.+|..+++|. +.++
T Consensus        17 ~~~~IekATs~~l~~~Dw~~il-eicD~In~~~~~pke-----A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh   90 (152)
T 3rru_A           17 VGHLIEKATFAGVQTEDWGQFM-HICDIINTTQDGPKD-----AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQ   90 (152)
T ss_dssp             HHHHHHHHTCSSCCSCCHHHHH-HHHHHHHHSTTHHHH-----HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHcCCCCCCccHHHHH-HHHHHHhCCCccHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence            4455666666664433322222 23333322 222332     45666666664 68899999999999999974 4456


Q ss_pred             HHHHhcCcHHH-HHHhhccC--CCHHHHHHHHHHHHHHhhCC
Q psy355          101 NFIIQTDFLNL-LLTSIEHD--SNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus       101 ~~v~~~g~l~~-L~~LL~~~--~~~~v~~~a~~ALs~l~r~~  139 (285)
                      ..|.....+.- |++++...  .+..|+.+++..|-.-....
T Consensus        91 ~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F  132 (152)
T 3rru_A           91 SLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF  132 (152)
T ss_dssp             HHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            66766667764 78887642  34579999998888776543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.31  E-value=5.5  Score=30.98  Aligned_cols=95  Identities=12%  Similarity=0.105  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC-
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-  204 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~-  204 (285)
                      ...-.|+-+++..+..-+     ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++... 
T Consensus        30 ~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~  104 (149)
T 3g2s_A           30 ASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY  104 (149)
T ss_dssp             HHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence            455566666665543222     2345677778889999999999998888765 667778888888999999998641 


Q ss_pred             --CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 --DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 --~~~d~~~~e~al~aL~~l~~~~  226 (285)
                        +..+..++++++..+..-....
T Consensus       105 ~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A          105 LGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHh
Confidence              1127889999999998877544

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=82.09  E-value=3.2  Score=33.11  Aligned_cols=95  Identities=9%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC-
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-  204 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~-  204 (285)
                      ...-.|+.+++..+...+     ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++... 
T Consensus        32 ~~ileicD~I~~~~~~~k-----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~  106 (171)
T 1juq_A           32 EYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY  106 (171)
T ss_dssp             HHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcccc
Confidence            344566666665543322     2345677778899999999999999988876 567777888889999999998631 


Q ss_pred             --CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 --DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 --~~~d~~~~e~al~aL~~l~~~~  226 (285)
                        ...+..++++++..+..-....
T Consensus       107 ~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A          107 LGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHc
Confidence              1236789999999998776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	4e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-05
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-05
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-04

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 4e-22
 Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 43  GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
           GAL+ L+D   ++D A DF ++ G+ +L    LE     LRWRAA+ +    QN    Q 
Sbjct: 36  GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 95

Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
            ++    L  LL  ++ D+  TV+VK+L+A+SCLVR+ E  L +F++ DGFSVL+R +Q 
Sbjct: 96  QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 155

Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
           + +KL +KS FL+  L   + + K  L SMGMV+Q+  L+  E +     +EH+L AL S
Sbjct: 156 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCS 212

Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF 272
           L+ D  +    CR   L L+  L    +    +E Y +ELE    +L   F
Sbjct: 213 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 263

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 6/199 (3%)

Query: 44  ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
           A+ NL +Y    + A        +P L  LL   D  +  +AA  V  + +        +
Sbjct: 1   AVVNLINYQDDAELAT-----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55

Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK 163
                ++ ++ ++++ ++      +   +  L   + E L    K  G   L++ + S  
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV 114

Query: 164 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223
           + ++  +   +  L       K  +   G +++M  L++  +     +    L  LA   
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174

Query: 224 KDSTEAQSLCRLEPLNLKF 242
           ++S             +  
Sbjct: 175 QESKLIILASGGPQALVNI 193

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 31/250 (12%), Positives = 84/250 (33%), Gaps = 6/250 (2%)

Query: 11  DALNSMMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP 68
           +A    ++     +  I++T++   + +      G L NLS      +      K GG+P
Sbjct: 48  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS---HHREGLLAIFKSGGIP 104

Query: 69  VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 128
            L  +L      + + A  T+ +++ +   ++  +     L  ++  +    N      +
Sbjct: 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 163

Query: 129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 188
              +  L   N+E     +   G   L+  +++   + ++ +   +  + +  +  K  +
Sbjct: 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223

Query: 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIK 248
           +  G ++ + + +        +     L  L+         + L       L      + 
Sbjct: 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 283

Query: 249 EKHAGNEVYH 258
              AG     
Sbjct: 284 TCAAGILSNL 293

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 26/224 (11%), Positives = 78/224 (34%), Gaps = 21/224 (9%)

Query: 21  GAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDP 79
           G  + K ++ L  +++  + I    + +               ++GG+  L  LL   + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPNQ 58

Query: 80  ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139
            ++  AA  + ++V  +  ++    + + +   ++ +    N  +Q +    +  L   +
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 140 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 183
              LKE +  D   VL   +                +    ++   +   +  L + +  
Sbjct: 119 --ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 184 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227
            + +    G+++ +   +    A     ++ + + +  L   S 
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.94
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.92
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.83
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.64
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.63
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.6
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.59
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.5
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.48
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.46
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.3
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.3
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.24
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.14
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.12
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.1
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.9
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.84
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.78
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.41
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.28
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	97.28
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.08
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.92
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.92
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.58
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.22
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	96.08
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	95.85
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.84
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.75
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	95.63
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	94.7
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	94.16
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.15
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.35
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.83
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	89.5
d1elka_	153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	87.62
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	87.31
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	82.3
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	81.45

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=290.88  Aligned_cols=252  Identities=34%  Similarity=0.524  Sum_probs=239.6

Q ss_pred             CHHHHHHHHHHHHhccCC----------CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHH
Q psy355           19 NVGAELEKIIKTLKENQD----------QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAE   87 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~----------~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~   87 (285)
                      +|++.||+++.++.++..          +.+.+..|++.|.+++++.||+++|++.||+++++. +|+++++++|..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~   81 (264)
T d1xqra1           2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ   81 (264)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            589999999999999962          347799999999999999999999999999999986 899999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHH
Q psy355           88 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLV  167 (285)
Q Consensus        88 ~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~  167 (285)
                      +||+++++||.+|..+++.|++|+|+++|.+++++.++..|+|||+++++++++....|...||++.|+++|++++.+++
T Consensus        82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~  161 (264)
T d1xqra1          82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK  161 (264)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHH
Confidence            99999999999999999999999999999877888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHH
Q psy355          168 IKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFI  247 (285)
Q Consensus       168 ~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~  247 (285)
                      .+++++|.+++.++++.+..+++.|+++.|+.+|.++   ++++++.++.+|.+|+..++.....+....+.+...++++
T Consensus       162 ~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~  238 (264)
T d1xqra1         162 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR  238 (264)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC---CHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999   9999999999999999999999888988888898999988


Q ss_pred             HHHccChHhhHHHHHHHHHHHHHhcC
Q psy355          248 KEKHAGNEVYHKELEHVNSVLTEVFE  273 (285)
Q Consensus       248 ~~~l~~~~e~~~~~~~~~~il~~~f~  273 (285)
                      .+.+...+++.++.+++.+|+++||+
T Consensus       239 ~~~~~~~~~~~e~~~~~~~ll~~~~~  264 (264)
T d1xqra1         239 CQLLQQHEEYQEELEFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHhccchHHHHHHHHHHHHHHHHhcC
Confidence            88888888999999999999999996

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.6e-25  Score=207.48  Aligned_cols=252  Identities=16%  Similarity=0.188  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355           21 GAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      ...+..+++.|...-  .+.+.+..+++.|.++++..+ ....+.+.|+++.++.++.++++.++.+|+++|++++++++
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            444555555444333  235678889999999987654 34678999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355           98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus        98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      .....+++.|+++.|..++++ +++.+++.++|+|+|++.+++.....+++.|+++.++..+.+++.+++..|+|+|+++
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            999999999999999999997 6789999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH-----HHHH
Q psy355          178 CTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN-----FIKE  249 (285)
Q Consensus       178 ~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~-----~~~~  249 (285)
                      +.+   .++....+++.|++++|+.+|...   |.++...++.+|.+|+..+......-......+...++     +.++
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~---d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~  476 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF  476 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHH
Confidence            864   456778999999999999999988   99999999999999987654321100000011122222     3466


Q ss_pred             HccChHhhHHHHHHHHHHHHHhcCCCCc
Q psy355          250 KHAGNEVYHKELEHVNSVLTEVFEEDSL  277 (285)
Q Consensus       250 ~l~~~~e~~~~~~~~~~il~~~f~~~~~  277 (285)
                      .+| .+++.++|++|.+|+++||++++|
T Consensus       477 ~Lq-~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         477 NCQ-QNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GGG-GCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHH-cCCCHHHHHHHHHHHHHHcCCcCC
Confidence            888 458999999999999999988764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.3e-23  Score=190.03  Aligned_cols=243  Identities=14%  Similarity=0.175  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355           21 GAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP   97 (285)
Q Consensus        21 ~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~   97 (285)
                      .......++.|..-.  .+++.+..++..|..++...+ ....+...|+++.|+.++.++++.++..|+++|++++.+++
T Consensus       183 ~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~  262 (434)
T d1q1sc_         183 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD  262 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             hhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhh
Confidence            344445555443322  345778889999999987654 34456788999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355           98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus        98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      .....+++.|+++.|+.++++ +++.++..|+|+|++++++++.....+.+.|+++.++.++.+++.+++..|+|++.++
T Consensus       263 ~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl  341 (434)
T d1q1sc_         263 EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY  341 (434)
T ss_dssp             HHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            999999999999999999996 6789999999999999999998888899999999999999999999999999999999


Q ss_pred             hcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH-----HHhhcccCcccHHHHHHHHHHHc
Q psy355          178 CTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE-----AQSLCRLEPLNLKFKLNFIKEKH  251 (285)
Q Consensus       178 ~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~l  251 (285)
                      +.. +++....+++.|++++|+.+|..+   +++++..++.+|.+|++.+..     .....-. +.++.    +.++.+
T Consensus       342 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~---d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~----~~i~~L  413 (434)
T d1q1sc_         342 TSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGL----DKIEAL  413 (434)
T ss_dssp             HHHSCHHHHHHHHHTTCHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTSH----HHHHHH
T ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH-HcCCH----HHHHHH
Confidence            875 567788899999999999999998   999999999999999864421     1110100 01111    245578


Q ss_pred             cChHhhHHHHHHHHHHHHHhcC
Q psy355          252 AGNEVYHKELEHVNSVLTEVFE  273 (285)
Q Consensus       252 ~~~~e~~~~~~~~~~il~~~f~  273 (285)
                      + ++++.++++.|.+|+++||+
T Consensus       414 ~-~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         414 Q-RHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             H-TCSSHHHHHHHHHHHHHHCC
T ss_pred             H-cCCCHHHHHHHHHHHHHHhC
Confidence            7 45899999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=5.8e-19  Score=164.72  Aligned_cols=189  Identities=13%  Similarity=0.231  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355           38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI  116 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL  116 (285)
                      .+.+..|++.|..++... +....+...|+++.++.+|.+++++++..|+|+|||++..++.+++.+++.|++++|+.++
T Consensus       134 ~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll  213 (503)
T d1wa5b_         134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF  213 (503)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc
Confidence            456788999999988653 4566789999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355          117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ  196 (285)
Q Consensus       117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~  196 (285)
                      .+ .+..++..++|+|++++++.++........++++.|+.++.+++..++..++|++++++...++....+++.|+++.
T Consensus       214 ~~-~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  292 (503)
T d1wa5b_         214 NS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR  292 (503)
T ss_dssp             GS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             cc-CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhh
Confidence            97 56789999999999999986555444555789999999999999999999999999999998888999999999999


Q ss_pred             HHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      ++.++.++   +..++..++.+|.+++.+.+...
T Consensus       293 l~~ll~~~---~~~v~~~al~~l~nl~~~~~~~~  323 (503)
T d1wa5b_         293 LVELLSHE---STLVQTPALRAVGNIVTGNDLQT  323 (503)
T ss_dssp             HHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhcccCC---chhhhhhHHHHHHHHHHHHHHHH
Confidence            99999998   99999999999999998886543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-18  Score=162.39  Aligned_cols=198  Identities=14%  Similarity=0.199  Sum_probs=176.5

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI  103 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v  103 (285)
                      +...+..|.+.. +.+.+..|...|..++.+.++...+++.||+|+|+++|.+++++++..|+++|++++.+++..++.+
T Consensus        61 v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  139 (529)
T d1jdha_          61 VSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV  139 (529)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHH
Confidence            444444555444 3567888999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCc
Q psy355          104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN  182 (285)
Q Consensus       104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~  182 (285)
                      .+.|++|+|+.+|++ +++.++..++++|++++.+++.....+...||++.|+.++.++ ...++..+++++.+++. ++
T Consensus       140 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~  217 (529)
T d1jdha_         140 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS  217 (529)
T ss_dssp             HHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-ST
T ss_pred             HhcCCchHHHHHHHc-cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cc
Confidence            999999999999996 6789999999999999999888888899999999999999765 57899999999999865 56


Q ss_pred             hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +.+..+++.|++++|+.++.++   +..++..++.+|.++.....
T Consensus       218 ~~~~~~~~~g~~~~L~~ll~~~---~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         218 SNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             THHHHHHHTTHHHHHHTTTTSS---CHHHHHHHHHHHHHHHTTCT
T ss_pred             cccchhhhhhhhhhHHHHhccc---chhhhhhhhhHHHhcccccc
Confidence            7888999999999999999998   99999999999999875553

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2e-18  Score=156.82  Aligned_cols=237  Identities=11%  Similarity=0.175  Sum_probs=185.9

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch--HHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY--ANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn--a~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      +++.++.+..++  .+.+..|+..+..++....|  ...+.+.|++|+|+++|++ +++++|..|+++|++++..++...
T Consensus        15 i~~lv~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          15 VEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             HHHHHHHHTSSC--HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            566677666653  57888899999887654444  4678999999999999975 678999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-----HHHHHHHHHHHH
Q psy355          101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-----EKLVIKSCFLIA  175 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-----~~v~~ka~~~l~  175 (285)
                      ..+++.|++|.|+.+|.+ ++..++..|+|+|++++.+++.....+.+.||++.++.++..++     ......++|+++
T Consensus        93 ~~i~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            999999999999999996 67899999999999999998888888999999999999998653     456788999999


Q ss_pred             HHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChH
Q psy355          176 CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNE  255 (285)
Q Consensus       176 ~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~  255 (285)
                      +++...+.........++++.|..++.++   +++++..++.+|.+++..++.......... .+ ..+-   +.+.  +
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~-~~Lv---~ll~--~  241 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEMVVKKG-VV-PQLV---KLLG--A  241 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHTTT-CH-HHHH---HHHT--C
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhcc---ccchhhhHHhhhcccchhhhhhHHHHhhcc-cc-hhcc---cccc--c
Confidence            99988665555566678899999999998   999999999999999988765433222221 22 2222   1222  2


Q ss_pred             hhHHHHHHHHHHHHHhcC
Q psy355          256 VYHKELEHVNSVLTEVFE  273 (285)
Q Consensus       256 e~~~~~~~~~~il~~~f~  273 (285)
                      .+.+....+..++..+..
T Consensus       242 ~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         242 TELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTT
T ss_pred             chhhhhhchhhhhhhHHh
Confidence            345555566666655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-17  Score=139.69  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=139.7

Q ss_pred             CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q psy355           37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT  114 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~  114 (285)
                      +.+.+..|+..|..++.+ ..+...+...||+|.|+++|. .+++.+|..|+++|++++.+++..+..+.+.|+++.|++
T Consensus        72 ~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~  151 (264)
T d1xqra1          72 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR  151 (264)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHH
Confidence            357799999999999975 445667899999999999997 478999999999999999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH
Q psy355          115 SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS  190 (285)
Q Consensus       115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~  190 (285)
                      ++.+ .+..++.+++++|++++.+++.....+.+.|+++.|+.+|++++..+|..|+++|.+|+...+.....+..
T Consensus       152 lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         152 AMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHhc-CchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9997 67899999999999999999999999999999999999999999999999999999999988877666654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8e-17  Score=150.78  Aligned_cols=186  Identities=12%  Similarity=0.127  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355           37 QKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        37 ~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L  115 (285)
                      +++.+..|+..|..++.+.+ ....+...||+|+|+.+|+++++.++..|++++++++.+++..+..+...|++++|+.+
T Consensus       114 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  193 (529)
T d1jdha_         114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI  193 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHH
Confidence            35778888888988876554 44568899999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE  195 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~  195 (285)
                      +.+.....++..+++++++++. ++.....|++.||++.|+.++.+++.+++..+++++.++......   .....|+++
T Consensus       194 l~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i~  269 (529)
T d1jdha_         194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLG  269 (529)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hhhhhhcch
Confidence            9876778899999999999976 566778899999999999999999999999999999999765432   122247899


Q ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355          196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA  229 (285)
Q Consensus       196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~  229 (285)
                      .|+.++.++   +..+++.++.+|.+++..++..
T Consensus       270 ~Lv~ll~~~---~~~~~~~a~~~L~~l~~~~~~~  300 (529)
T d1jdha_         270 TLVQLLGSD---DINVVTCAAGILSNLTCNNYKN  300 (529)
T ss_dssp             HHHHHTTCS---CHHHHHHHHHHHHHHTTTCHHH
T ss_pred             hhhhhcccc---cHHHHHHHHHHHHhhccchhHH
Confidence            999999998   9999999999999999877654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5e-17  Score=145.51  Aligned_cols=161  Identities=14%  Similarity=0.103  Sum_probs=133.1

Q ss_pred             CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHH
Q psy355           65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLK  144 (285)
Q Consensus        65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~  144 (285)
                      +.+|.||++|++++|++|..|+++|+++|.+|+..+..+.+.|++|+|+++|++ +++.+|..|+++|.+++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999999999999999999999999999999999999996 6789999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhccc------------CCCCCccH
Q psy355          145 EFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI------------EDALDTEM  211 (285)
Q Consensus       145 ~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~------------~~~~d~~~  211 (285)
                      .+.+.||++.|+.++.+ .+..++..|++++.+++.... ........|+.+.+..++..            ....+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999876 578999999999999988754 33344443433333322210            01226788


Q ss_pred             HHHHHHHHHHHHhcCh
Q psy355          212 NEHLLSALASLIKDST  227 (285)
Q Consensus       212 ~e~al~aL~~l~~~~~  227 (285)
                      ++.++.+|..+....+
T Consensus       160 ~~~a~~~l~~~~~~~~  175 (457)
T d1xm9a1         160 FFNATGCLRNLSSADA  175 (457)
T ss_dssp             HHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHhcCch
Confidence            9999999988876654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.9e-16  Score=137.90  Aligned_cols=176  Identities=12%  Similarity=0.147  Sum_probs=144.7

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF  102 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~  102 (285)
                      |...++.|..++  ++.+..|...|..++. +-++...+.+.||+|+|+++|+++++++|..|+++|++++.+++.++..
T Consensus         4 ip~lv~~L~~~~--~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSSC--THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHhCCCC--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            455677776554  5788999999999985 4678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh----------------ccCcHHH
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI----------------QSKKEKL  166 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L----------------~~~~~~v  166 (285)
                      +.+.|+++.|++++.+..+..++..|+++|.+++.+.... ..+.. .|++.++..+                ...+..+
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHh-cccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999999988788899999999999999876543 34444 4444444433                3347899


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhccc
Q psy355          167 VIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI  203 (285)
Q Consensus       167 ~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~  203 (285)
                      +..+++++.+++.............|+++.++.++.+
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence            9999999999987765555555567889999998865

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.63  E-value=1.6e-09  Score=79.98  Aligned_cols=109  Identities=8%  Similarity=0.110  Sum_probs=89.2

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHH
Q psy355           74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFS  153 (285)
Q Consensus        74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~  153 (285)
                      |+++++.||..|+++||.+.            ..++++|+.+|.+ +++.+|..|+++|+.+.  .+         ..++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~--~~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSN-EDWRIRGAAAWIIGNFQ--DE---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGC-SCHHHHHHHHHHHGGGC--SH---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcc--hh---------hhHH
Confidence            56788999999999998752            2367889999995 78999999999998763  22         2367


Q ss_pred             HHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355          154 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA  220 (285)
Q Consensus       154 ~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~  220 (285)
                      .|+.+|+++++.+|..|+++|..+-  +         .+.++.|..++..+   ++.+|..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~--~---------~~~~~~L~~ll~d~---~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG--G---------ERVRAAMEKLAETG---TGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC--S---------HHHHHHHHHHTTSC---CTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC--c---------cchHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            8899999999999999999999872  2         24678888999988   9999999998874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.8e-07  Score=82.55  Aligned_cols=208  Identities=12%  Similarity=0.047  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE  117 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~  117 (285)
                      .+.+..++..+..+...+....-  .-.-+|.+..+++++++.+|..++.+++.+++.   ...........|.+..++.
T Consensus       377 ~~v~~~~~~~l~~~~~~~~~~~~--~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~  451 (588)
T d1b3ua_         377 PEVRLNIISNLDCVNEVIGIRQL--SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ---LGVEFFDEKLNSLCMAWLV  451 (588)
T ss_dssp             HHHHHHHHTTCHHHHHHSCHHHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---HCGGGCCHHHHHHHHHGGG
T ss_pred             hhhhhHHHHHHHHHHhhcchhhh--hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---cChHhHHHHHHHHHHhhcc
Confidence            34555555555544433221111  112356777788899999999999999998852   1111222345677788887


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355          118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM  197 (285)
Q Consensus       118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L  197 (285)
                      . +...||..|+.+|+.++......   +.....++.+.+++.+++...|..+++++..+....+   .......+++.+
T Consensus       452 D-~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~l  524 (588)
T d1b3ua_         452 D-HVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTV  524 (588)
T ss_dssp             C-SSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHH
T ss_pred             C-CchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHH
Confidence            4 67899999999999998754322   2233467888999999999999999999998865322   223344689999


Q ss_pred             HHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHH
Q psy355          198 CVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTE  270 (285)
Q Consensus       198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~  270 (285)
                      ..++..+   .+.+|..++.+|..+....+..         .+...+...++.++ .+++.++..+|..-++.
T Consensus       525 l~~~~D~---v~nVR~~a~~~l~~i~~~~~~~---------~~~~~i~~~l~~L~-~D~d~dVr~~A~~al~~  584 (588)
T d1b3ua_         525 LRMAGDP---VANVRFNVAKSLQKIGPILDNS---------TLQSEVKPILEKLT-QDQDVDVKYFAQEALTV  584 (588)
T ss_dssp             HHGGGCS---CHHHHHHHHHHHHHHGGGSCHH---------HHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred             HHHcCCC---CHHHHHHHHHHHHHHHHHcCcH---------hHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence            9999988   8999999999999997655432         12234445556776 35788888888887765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.50  E-value=1.8e-07  Score=68.59  Aligned_cols=88  Identities=11%  Similarity=0.060  Sum_probs=72.9

Q ss_pred             CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHH
Q psy355           65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLK  144 (285)
Q Consensus        65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~  144 (285)
                      .++++|+.+|.++++.||..|+++||++..  +         +++|.|+.+|.+ +++.||..|+++|+.+  +.+    
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L~~~l~d-~~~~VR~~a~~aL~~i--~~~----   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLED-DSGFVRSGAARSLEQI--GGE----   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHH-CCTHHHHHHHHHHHHH--CSH----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHHHhhhcc-chhHHHHHHHHHHHHh--Ccc----
Confidence            468999999999999999999999997642  2         367899999986 6789999999999987  222    


Q ss_pred             HHHhcCcHHHHHHhhccCcHHHHHHHHHHHH
Q psy355          145 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA  175 (285)
Q Consensus       145 ~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~  175 (285)
                           ..++.|..++++++..+|..|+.+|.
T Consensus        84 -----~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 -----RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 23667788999999999999887763

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.1e-05  Score=74.55  Aligned_cols=191  Identities=10%  Similarity=0.056  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH
Q psy355           20 VGAELEKIIKTLKENQD-QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF   98 (285)
Q Consensus        20 ~~~~mk~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~   98 (285)
                      +....++.++.|.+... +++.+..+.+.|..++..+......  ..-++++..++.++++.||..|+.+++.+++.-+.
T Consensus        43 ~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~~~--~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~  120 (588)
T d1b3ua_          43 VERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP  120 (588)
T ss_dssp             HHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGG--GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH
T ss_pred             cHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH
Confidence            33334556666665543 3455666666666654432211111  12356777888899999999999999999975432


Q ss_pred             HHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355           99 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus        99 ~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      .   .+..-.+|.+..+..+ .....|..|+..++.+..........    ..++.+.+++++.++.+|+.|+.++..++
T Consensus       121 ~---~~~~~l~p~i~~L~~~-~~~~~r~~a~~ll~~~~~~~~~~~~~----~l~~~~~~l~~D~~~~VR~~a~~~l~~~~  192 (588)
T d1b3ua_         121 S---DLEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSAVKA----ELRQYFRNLCSDDTPMVRRAAASKLGEFA  192 (588)
T ss_dssp             H---HHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHHHHH----HHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            1   2334456655666664 55678888888888876654333222    23677888888889999999999999988


Q ss_pred             cCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          179 TDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       179 ~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ..-+.   ......+++.+..++..+   +..+|..++.++..++...
T Consensus       193 ~~~~~---~~~~~~l~~~l~~l~~d~---~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         193 KVLEL---DNVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             HTSCH---HHHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHS
T ss_pred             HHhcH---HHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHHhhccC
Confidence            75321   122235667777777777   8888888888888887654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.1e-07  Score=88.34  Aligned_cols=150  Identities=12%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-HHHH
Q psy355           68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-LKEF  146 (285)
Q Consensus        68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f  146 (285)
                      +.+...++++++.+|..|+.++|.++.+....-...+ ..++|.|+..+++ +++.||..|+|+||.++...... ...+
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~  475 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTY  475 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3444567789999999999999999987654222111 2367888888885 78999999999999987532221 2233


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD  225 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~  225 (285)
                      . ...++.++..+.+++++++..|++++.+++.. ++....++-  .+++.++..+...   +...+..++.++..++..
T Consensus       476 ~-~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~--~il~~l~~~l~~~---~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         476 L-KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSKY---QHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             T-TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHH--HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHh
Confidence            3 46788889999999999999999999999864 222222322  3567778888877   777777777787777643

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=2.5e-06  Score=70.86  Aligned_cols=102  Identities=15%  Similarity=0.049  Sum_probs=62.9

Q ss_pred             HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH
Q psy355           62 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE  141 (285)
Q Consensus        62 ~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~  141 (285)
                      ++-.-.+.|+++|++++|.||..|+.+|+.+.  ++         .++|.|++++++ +++.+|..|+++|+.+......
T Consensus        16 ~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~~~   83 (276)
T d1oyza_          16 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKC   83 (276)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTT
T ss_pred             cccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccc
Confidence            44445667777888888888888888887654  22         246777777774 6677777787777776432221


Q ss_pred             hHHHHHhcCcHHHH-HHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355          142 CLKEFIKRDGFSVL-LRCIQSKKEKLVIKSCFLIACLCTDN  181 (285)
Q Consensus       142 ~~~~f~~~~gi~~L-~~~L~~~~~~v~~ka~~~l~~L~~~~  181 (285)
                      . ..     .++.+ ..+++++++.++..|+.++..++...
T Consensus        84 ~-~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~  118 (276)
T d1oyza_          84 E-DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKN  118 (276)
T ss_dssp             H-HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC
T ss_pred             c-cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHcccc
Confidence            1 11     12222 33455567777777777777665543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.7e-06  Score=84.12  Aligned_cols=179  Identities=14%  Similarity=0.090  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH---------------HHH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS---------------QNF  102 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~---------------q~~  102 (285)
                      +..+..|+..|.++....+....   ....+.+++.+.+++++||..|+.++|+++..|+..               +..
T Consensus       829 ~~~~~~al~~Lge~~~~~~~~~~---~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~  905 (1207)
T d1u6gc_         829 DSIRLLALLSLGEVGHHIDLSGQ---LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYL  905 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSC---THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHH
Confidence            45566666666554432221100   012456778899999999999999999998877532               111


Q ss_pred             -------HHh-cC------cHHHHHHhhc---cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHH
Q psy355          103 -------IIQ-TD------FLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEK  165 (285)
Q Consensus       103 -------v~~-~g------~l~~L~~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~  165 (285)
                             ++. .+      .++.++..|.   .+.+..+|..+..+|+.++..+|..        .+|.|...+.+++..
T Consensus       906 ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~--------~lp~L~~~l~~~~~~  977 (1207)
T d1u6gc_         906 LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGSSY  977 (1207)
T ss_dssp             HHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG--------THHHHTTTSSSSCHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhCCCCHH
Confidence                   111 11      2344444432   1245678888888888887766542        478888899999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355          166 LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS  231 (285)
Q Consensus       166 v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~  231 (285)
                      +|.-|..++.+++...+......+. .+++.++..|..+   +..+|..|+.+|.+++...|+.+.
T Consensus       978 ~r~~ai~~l~~~~~~~~~~~~~~l~-~li~~ll~~l~d~---~~~vR~~al~~l~~~~~~~p~li~ 1039 (1207)
T d1u6gc_         978 ARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP---DLNVRRVALVTFNSAAHNKPSLIR 1039 (1207)
T ss_dssp             HHHHHHHHTGGGCCSSCCTHHHHHH-HHSTTTHHHHSSS---STHHHHHHHHHHHHHHHHCGGGTG
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhChHHHH
Confidence            9999999999988875544333332 3667788889888   999999999999999998886554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.5e-05  Score=65.94  Aligned_cols=127  Identities=11%  Similarity=0.026  Sum_probs=87.6

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC
Q psy355           28 IKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD  107 (285)
Q Consensus        28 l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g  107 (285)
                      ++.|.++  +...+..|...|..+-.          -.+++.|+++|+++++.||..|+++|+.+...... ...     
T Consensus        25 ~~~L~d~--~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~-----   86 (276)
T d1oyza_          25 FRLLDDH--NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN-----   86 (276)
T ss_dssp             HHHTTCS--SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH-----
T ss_pred             HHHhcCC--CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc-----
Confidence            3444433  35778888888876532          12478999999999999999999999988754332 111     


Q ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355          108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL  177 (285)
Q Consensus       108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L  177 (285)
                      .++.|...+-+++++.+|..|+++|+.++.+.+.....     .++.+...+.+++..++..|++++...
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            34556665555678899999999999988765443222     345666667777777777777766654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=9.3e-06  Score=81.10  Aligned_cols=187  Identities=10%  Similarity=0.112  Sum_probs=136.2

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355           67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF  146 (285)
Q Consensus        67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f  146 (285)
                      ++.|+..+.+++..+|..++.+||.++.-+|.        ..+|.|..++.+ ++..+|..++.++..++.+.+.....+
T Consensus       930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~-~~~~~r~~ai~~l~~~~~~~~~~~~~~ 1000 (1207)
T d1u6gc_         930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1000 (1207)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            44555566778899999999999999877763        478999999986 678999999999999988877666555


Q ss_pred             HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC---------------CCCccH
Q psy355          147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED---------------ALDTEM  211 (285)
Q Consensus       147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~---------------~~d~~~  211 (285)
                      + ..-++.++..|++++..+|+.|..++..++.+.|........ .++|.|........               ++-.++
T Consensus      1001 l-~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~-~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~ 1078 (1207)
T d1u6gc_        1001 L-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1078 (1207)
T ss_dssp             H-HHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred             H-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHhccchhheeeeecCCceeecCCcHHH
Confidence            4 234566778899999999999999999999988876544443 36666665433320               113568


Q ss_pred             HHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCC
Q psy355          212 NEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEED  275 (285)
Q Consensus       212 ~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~  275 (285)
                      |..|..++..++..+.        .+..+.+++.+...-+..+   .++.-.|..++.++..-.
T Consensus      1079 rk~a~e~~~~~l~~~~--------~~~~~~~~~~~~~~gl~d~---~di~~~~~~~l~~l~~~~ 1131 (1207)
T d1u6gc_        1079 RKAAFECMYTLLDSCL--------DRLDIFEFLNHVEDGLKDH---YDIKMLTFLMLVRLSTLC 1131 (1207)
T ss_dssp             HHHHHHHHHHHHHSSC--------SSSCHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhh--------hhcCHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHhC
Confidence            9999999999986653        2235566676666666543   256667777777665543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.7e-05  Score=75.79  Aligned_cols=185  Identities=17%  Similarity=0.197  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHhhcCcch-HHHHHH-cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHh
Q psy355           39 DICIGALDNLSDYVCSIDY-ANDFLK-MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dn-a~~~~~-~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~~L  115 (285)
                      +-...+++.+..+++.... -..++. ..-++.+..++++.++.||..|..++|.++...+. .+..+  ...+|.|++-
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~  714 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTN  714 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHH
Confidence            4455566666666554321 123333 33456777899999999999999999999875432 11111  1367778888


Q ss_pred             hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355          116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGM  193 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~  193 (285)
                      |.+ ....++..|+|+++.|+.........++ ...++.|+..++++  +..++..++-+++.|+...|+.....+. .+
T Consensus       715 L~~-~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-~~  791 (888)
T d1qbkb_         715 LNP-EFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-QF  791 (888)
T ss_dssp             CCG-GGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-GT
T ss_pred             hCc-CCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-HH
Confidence            875 5678999999999999987665544443 24678889999875  4679999999999998877765433332 47


Q ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355          194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ  230 (285)
Q Consensus       194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~  230 (285)
                      +++++..|...  .|..-++.+..++..+...+|+.+
T Consensus       792 ~~~~~~~l~~~--~d~~ek~~~~~g~~~~i~~~p~~~  826 (888)
T d1qbkb_         792 IRPWCTSLRNI--RDNEEKDSAFRGICTMISVNPSGV  826 (888)
T ss_dssp             HHHHHHHHTTS--CCSHHHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHhccC--CCcHHHHHHHHHHHHHHHHCcHHH
Confidence            78888877653  266678999999999999998654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=8.5e-05  Score=70.26  Aligned_cols=201  Identities=12%  Similarity=0.094  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHH-------HH------cCCHHHHHhhhcCCCHHHHHHH
Q psy355           19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDF-------LK------MGGLPVLQPLLEGSDPELRWRA   85 (285)
Q Consensus        19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~-------~~------~Gg~~~Lv~lL~s~~~~vr~~A   85 (285)
                      ++...+..++.++.+...+.+.|.-|.-.|...+........-       ..      ...-..++..|.++++.||..+
T Consensus        36 ~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~  115 (861)
T d2bpta1          36 NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAA  115 (861)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            4455666677777776666677777777777766543221110       00      0112456777889999999999


Q ss_pred             HHHHHHHhhCCHHHHHHHHh---cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh--cCcHHHHHHhhc
Q psy355           86 AETVADIVQNNPFSQNFIIQ---TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQ  160 (285)
Q Consensus        86 ~~~lg~~a~nn~~~q~~v~~---~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~--~~gi~~L~~~L~  160 (285)
                      +.+++.++...      +-+   -..+|.|++.+.++.+..++..|+.+++.++....+..+.+..  ...+..++..+.
T Consensus       116 a~~i~~i~~~~------~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~  189 (861)
T d2bpta1         116 AQLIAAIADIE------LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQ  189 (861)
T ss_dssp             HHHHHHHHHHH------GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHh------CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988521      111   1367888888887666788889999999998765543322221  112233344444


Q ss_pred             c--CcHHHHHHHHHHHHHHhcCCchHH-HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355          161 S--KKEKLVIKSCFLIACLCTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE  228 (285)
Q Consensus       161 ~--~~~~v~~ka~~~l~~L~~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~  228 (285)
                      +  .+..++..|..++.+++..-+... .......+++.+...+..+   +++++..++.++..++...+.
T Consensus       190 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE---DIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHHHGG
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH
Confidence            3  468999999999998876533221 1122233567788888888   999999999999999877654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.1e-05  Score=69.07  Aligned_cols=200  Identities=9%  Similarity=0.092  Sum_probs=128.4

Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHH--HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355           23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAN--DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ  100 (285)
Q Consensus        23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~--~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q  100 (285)
                      .+...+..+.+.+.+.+.+..|+..+..++.......  .......++.+..++.+++++++..++.+++.+++..+..-
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            4555555666655566788888888888876543211  11222245667778899999999999999999998765422


Q ss_pred             HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH---------------------------------------
Q psy355          101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE---------------------------------------  141 (285)
Q Consensus       101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~---------------------------------------  141 (285)
                      ...+.....+.+...+.+ .++.++..|+..++.++.....                                       
T Consensus       252 ~~~l~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  330 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  330 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence            111222233444444453 5667777777777665421000                                       


Q ss_pred             ----------------h---HHHHHh---cCcH----HHHHHhhccCcHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcH
Q psy355          142 ----------------C---LKEFIK---RDGF----SVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMV  194 (285)
Q Consensus       142 ----------------~---~~~f~~---~~gi----~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v  194 (285)
                                      +   ...+..   ...+    +.+...+++++.++|..|+.+++.++.+. +......+ ..++
T Consensus       331 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~  409 (458)
T d1ibrb_         331 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAM  409 (458)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHH
T ss_pred             cchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHH
Confidence                            0   000111   1122    45556677889999999999999998652 22222222 3578


Q ss_pred             HHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +.++.++.++   ++.+|..|+.+|..++...+
T Consensus       410 ~~l~~~l~d~---~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         410 PTLIELMKDP---SVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHGGGCS---CHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence            9999999998   99999999999999986654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.00025  Score=61.92  Aligned_cols=151  Identities=8%  Similarity=0.139  Sum_probs=94.5

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHH-
Q psy355           27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNF-  102 (285)
Q Consensus        27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~~q~~-  102 (285)
                      .+..+.++..+...+..++..+..+++..+.. ..-.....++.++..+.+  ++..+|..|+++++++....+..... 
T Consensus       132 l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  211 (458)
T d1ibrb_         132 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE  211 (458)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            33344444444455566677776666443211 111111235677777765  56789999999999999766543221 


Q ss_pred             HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355          103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      ......++.+..++.+ .++.++..++.+++.++..++......+...-.+.+...+.+.+..++..|+.++..++
T Consensus       212 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         212 SERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHhhHHHHhcC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            2223356667777775 68899999999999999877664433333333445566667777778777777776664

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.0079  Score=56.17  Aligned_cols=188  Identities=11%  Similarity=0.128  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHcCC---HHHHHhhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhcCcHHH
Q psy355           38 KDICIGALDNLSDYVCSIDYANDFLKMGG---LPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNF-IIQTDFLNL  111 (285)
Q Consensus        38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg---~~~Lv~lL~--s~~~~vr~~A~~~lg~~a~nn~~~q~~-v~~~g~l~~  111 (285)
                      ...+..|+..|..+++..+......-...   ++.++..+.  .++..+|..|..+++++...-+..... ......++.
T Consensus       149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (861)
T d2bpta1         149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV  228 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence            45577788888888877654322111111   233333332  467899999999999998765543221 122335677


Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH------
Q psy355          112 LLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK------  185 (285)
Q Consensus       112 L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~------  185 (285)
                      +...+.+ .++.++..++.++..++..++.....++..-....+....++.+..++..+.-++..++.......      
T Consensus       229 l~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~  307 (861)
T d2bpta1         229 VCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF  307 (861)
T ss_dssp             HHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7788875 678999999999999988766654444433334455666777889999999888887764321111      


Q ss_pred             -----------HHHHHCCcHHHHHHhcccC----CCCCccHHHHHHHHHHHHHhcCh
Q psy355          186 -----------QVLLSMGMVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       186 -----------~~l~~~g~v~~L~~lL~~~----~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                                 .... ..+++.+...+...    +..+...+..+..+|..+....+
T Consensus       308 ~~~~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  363 (861)
T d2bpta1         308 PQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG  363 (861)
T ss_dssp             TTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred             hhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc
Confidence                       1111 12455666666543    12234566667777766665544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00088  Score=63.32  Aligned_cols=218  Identities=11%  Similarity=0.070  Sum_probs=137.8

Q ss_pred             HHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHH--H----------HHHcCCHHH
Q psy355            3 EANRGFLLDALNSMM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAN--D----------FLKMGGLPV   69 (285)
Q Consensus         3 ~e~~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~--~----------~~~~Gg~~~   69 (285)
                      .+.|+==++.|+++. .++..-+..++.++.+.+.+...|.-|.-.|...+...+...  .          =.+...-..
T Consensus        15 ~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~   94 (876)
T d1qgra_          15 RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNY   94 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHH
Confidence            344444444454443 233566777888888877777788888888877764322110  0          011112356


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHh-HHHHH
Q psy355           70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEEC-LKEFI  147 (285)
Q Consensus        70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~  147 (285)
                      ++.+|.+++. ++..++.+|+.++...-...++   -+.+|.|++.+.+ +....++..++.+++.++....+. .....
T Consensus        95 ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~  170 (876)
T d1qgra_          95 VLHTLGTETY-RPSSASQCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS  170 (876)
T ss_dssp             HHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred             HHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            7778877664 5667899999988531000000   2689999998865 344678889999999998754332 21111


Q ss_pred             hcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHH-HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          148 KRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQ-VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       148 ~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~-~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                       ...++.++..+.++  +..++..|..++.+.....+.... .....-+++.+...+..+   +.+++..++.+|..+..
T Consensus       171 -~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~v~~~~~~~l~~l~~  246 (876)
T d1qgra_         171 -NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             -HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence             23567788888654  578999888888877654322111 111112456777888887   89999999999999998


Q ss_pred             cChH
Q psy355          225 DSTE  228 (285)
Q Consensus       225 ~~~~  228 (285)
                      ..+.
T Consensus       247 ~~~~  250 (876)
T d1qgra_         247 LYYQ  250 (876)
T ss_dssp             HSGG
T ss_pred             HhHH
Confidence            8764

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.0035  Score=54.32  Aligned_cols=161  Identities=17%  Similarity=0.243  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHh--hcCcchHHHHHHcCCHHHHHhhhc----C-------CCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355           38 KDICIGALDNLSDY--VCSIDYANDFLKMGGLPVLQPLLE----G-------SDPELRWRAAETVADIVQNNPFSQNFII  104 (285)
Q Consensus        38 ~~~~~~al~~L~~l--v~~~dna~~~~~~Gg~~~Lv~lL~----s-------~~~~vr~~A~~~lg~~a~nn~~~q~~v~  104 (285)
                      ++....-|..|.--  .+.+++...| ..+|+..|+.+|.    .       .++..+..+.++|..+..+.+.....+-
T Consensus        17 ~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~   95 (343)
T d2bnxa1          17 DMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLE   95 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHc
Confidence            33333444444332  3567889999 5788998888774    1       1256888999999998865555555555


Q ss_pred             hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh------CChHhHHHHH------hcCcHHHHHHhhccC-cHHHHHHHH
Q psy355          105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR------DNEECLKEFI------KRDGFSVLLRCIQSK-KEKLVIKSC  171 (285)
Q Consensus       105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r------~~~~~~~~f~------~~~gi~~L~~~L~~~-~~~v~~ka~  171 (285)
                      ..+++..+...|.+ +...+|+.|+-.|+.+|-      |+....+++-      +.+-+.+++..|+++ +...+..+.
T Consensus        96 ~~~~i~~l~~~L~s-~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m  174 (343)
T d2bnxa1          96 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL  174 (343)
T ss_dssp             SSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHH
T ss_pred             ChHHHHHHHHccCC-CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHH
Confidence            66899999999986 678999999999988873      2333333332      345678999988876 588999999


Q ss_pred             HHHHHHhcCCc------hHHHHHHHCCcHHHHHHh
Q psy355          172 FLIACLCTDNN------QVKQVLLSMGMVEQMCVL  200 (285)
Q Consensus       172 ~~l~~L~~~~~------~~~~~l~~~g~v~~L~~l  200 (285)
                      .+|..++.+.+      ..+..+...|+.+.+-.+
T Consensus       175 ~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l  209 (343)
T d2bnxa1         175 QLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  209 (343)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHH
Confidence            99999998865      457788888888766554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0057  Score=57.49  Aligned_cols=156  Identities=8%  Similarity=0.138  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHHH
Q psy355           23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPFS   99 (285)
Q Consensus        23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~~   99 (285)
                      .+...+..+.+++.+...+..++..|.++++..+...-. .....++.++..+.+  ++..++..|..++.+.....+..
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            445555555565555667778899999888765432211 112346777887765  45789999999999988765543


Q ss_pred             HHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355          100 QNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC  178 (285)
Q Consensus       100 q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~  178 (285)
                      ..... ..-.++.+...+.+ +++.++..++.++..++..++.....++.....+.+...+.+....++..+...+..++
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~  287 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            22111 11245556666664 67899999999999999988877666665666777888888888899888888777776


Q ss_pred             c
Q psy355          179 T  179 (285)
Q Consensus       179 ~  179 (285)
                      .
T Consensus       288 ~  288 (876)
T d1qgra_         288 D  288 (876)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.057  Score=45.61  Aligned_cols=126  Identities=12%  Similarity=0.125  Sum_probs=92.7

Q ss_pred             HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC---cHHHHHHhhccCcHHHHHHHHHH
Q psy355           97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD---GFSVLLRCIQSKKEKLVIKSCFL  173 (285)
Q Consensus        97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~---gi~~L~~~L~~~~~~v~~ka~~~  173 (285)
                      +.....++....+..+.+.+.. ++-.+...|...+-.+..-++.....|+..+   -+.....+|.+++.-+|+.+.-+
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3344555555666666666665 5678888888888888777787777888765   34556788999999999999999


Q ss_pred             HHHHhcCCc--hHH-HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          174 IACLCTDNN--QVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       174 l~~L~~~~~--~~~-~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      ++.+.....  .+. +++-+..-+..++.+|++.   ...++-.|...+.-.+.+.
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~---sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---SRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc---hhhHHHHhhhHhhhhhcCC
Confidence            999986532  232 4444556778899999988   8888888887776665444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.92  E-value=0.00017  Score=59.60  Aligned_cols=147  Identities=16%  Similarity=0.099  Sum_probs=77.2

Q ss_pred             CCHHHHHhhhcCCCHHHHHHHHHHHHH-----Hhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH-----
Q psy355           65 GGLPVLQPLLEGSDPELRWRAAETVAD-----IVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS-----  133 (285)
Q Consensus        65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~-----~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs-----  133 (285)
                      -.+..|..|++.+++.||..|+..|+.     +.+ .++.++..+...=..+.|..++. +++..||..++.+++     
T Consensus        66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~-D~d~~VR~~aa~~~~~~~L~  144 (233)
T d1lrva_          66 SPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA-DRDYLVRAYVVQRIPPGRLF  144 (233)
T ss_dssp             SCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTT-CSSHHHHHHHHHHSCGGGGG
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhc-CCCHHHHHHHHhccchhHHH
Confidence            346677788888888888888776542     111 34455555544433455666666 366777776665422     


Q ss_pred             HHhhC-ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHH-----HHhcC-CchHHHHHHHCCcHHHHHHhcccCCC
Q psy355          134 CLVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA-----CLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDA  206 (285)
Q Consensus       134 ~l~r~-~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~-----~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~  206 (285)
                      .++.+ .+.....+...-|.+.|..++++++..||..++..+.     .++.. ++.++....+. ..+.++..|..+  
T Consensus       145 ~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~--  221 (233)
T d1lrva_         145 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEP--  221 (233)
T ss_dssp             GTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCC--
T ss_pred             HHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCC--
Confidence            12222 2223333444445666666777777777777665432     12211 23344444433 223344455544  


Q ss_pred             CCccHHHHHH
Q psy355          207 LDTEMNEHLL  216 (285)
Q Consensus       207 ~d~~~~e~al  216 (285)
                       ++.+|+.+.
T Consensus       222 -d~~VR~aA~  230 (233)
T d1lrva_         222 -DPEVRLAIA  230 (233)
T ss_dssp             -CHHHHHHHH
T ss_pred             -CHHHHHHHH
Confidence             555555544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.92  E-value=0.013  Score=50.34  Aligned_cols=182  Identities=14%  Similarity=0.140  Sum_probs=111.8

Q ss_pred             HHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----CC
Q psy355            3 EANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----SD   78 (285)
Q Consensus         3 ~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~~   78 (285)
                      ++-|+|+.+|+......+  -++-..+.+.+..-+..+....+..|...... + ...      +..+..++++    .+
T Consensus        71 ~~~r~~~lDal~~~GT~~--a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~P-t-~~~------l~~~~~l~~~~~~~~~  140 (336)
T d1lsha1          71 KDYRRWILDAVPAMATSE--ALLFLKRTLASEQLTSAEATQIVASTLSNQQA-T-RES------LSYARELLNTSFIRNR  140 (336)
T ss_dssp             HHHHHHHHHHHHHHCSHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCC-C-HHH------HHHHHHHHTCHHHHTC
T ss_pred             hhHHHHHHHHHHHhCCHH--HHHHHHHHHHcCCCCHHHHHHHHHHHhccCCC-C-HHH------HHHHHHHHcCcccccc
Confidence            456889989998885322  23444444556666666666777777755532 2 222      4445566664    57


Q ss_pred             HHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355           79 PELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG  151 (285)
Q Consensus        79 ~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g  151 (285)
                      +.++..|.-++|+++..    ++.|.     ...++.+...+..   ..+..-+..++.||+|+  |+|...        
T Consensus       141 ~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~~i--------  205 (336)
T d1lsha1         141 PILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--GQPNSI--------  205 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGGGH--------
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc--CCHhHH--------
Confidence            88999999999998742    22221     2244555544431   24556677789999997  456544        


Q ss_pred             HHHHHHhhcc-------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          152 FSVLLRCIQS-------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       152 i~~L~~~L~~-------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                       +.|..++.+       .+..+|..|.|++..+....|...        .+.+..++... ..++++|-.|...|
T Consensus       206 -~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~-~e~~EvRiaA~~~l  270 (336)
T d1lsha1         206 -KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNV-AIKSELRIRSCIVF  270 (336)
T ss_dssp             -HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             -HHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCC-CCChHHHHHHHHHH
Confidence             344455532       268999999999999987766332        22333333333 23678888777766

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.0011  Score=59.74  Aligned_cols=90  Identities=19%  Similarity=0.211  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhhcCcchHHH-HHHcCCHHHHHhhhcC
Q psy355            6 RGFLLDALNSMMVNVGAELEKIIKTLKEN--------QDQKDICIGALDNLSDYVCSIDYAND-FLKMGGLPVLQPLLEG   76 (285)
Q Consensus         6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~--------~~~~~~~~~al~~L~~lv~~~dna~~-~~~~Gg~~~Lv~lL~s   76 (285)
                      .=|-+.|.+ +..++++.+|+.+++|..+        +.+.....-|+.++.++|.-..+.+. +.+.||=..+++|++|
T Consensus       377 ~FW~EN~~k-f~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h  455 (477)
T d1ho8a_         377 GFWSDNIDE-FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH  455 (477)
T ss_dssp             HHHHHHSGG-GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC
T ss_pred             hHHHHHHHh-hcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcC
Confidence            347777755 7788999999999999742        11234577899999999988766665 5778888899999999


Q ss_pred             CCHHHHHHHHHHHHHHhhCC
Q psy355           77 SDPELRWRAAETVADIVQNN   96 (285)
Q Consensus        77 ~~~~vr~~A~~~lg~~a~nn   96 (285)
                      ++++||..|+.++..+..+|
T Consensus       456 ~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         456 SDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             SSHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999887543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.013  Score=52.58  Aligned_cols=167  Identities=13%  Similarity=0.142  Sum_probs=114.0

Q ss_pred             chHHHHHHcC--CHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-----HHHHHHHHhcCcHHHHHHhhcc-CCCHHHHH
Q psy355           56 DYANDFLKMG--GLPVLQPLLE-GSDPELRWRAAETVADIVQNN-----PFSQNFIIQTDFLNLLLTSIEH-DSNTTVQV  126 (285)
Q Consensus        56 dna~~~~~~G--g~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-----~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~  126 (285)
                      +.+..+.+.+  -++.++.+++ ++-..|..-++.++-|++...     ..+...++.++++|.+-.|... =+|+.+..
T Consensus       257 ~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~e  336 (477)
T d1ho8a_         257 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQ  336 (477)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHH
Confidence            3445555443  3777888775 678888889999999998642     2234445667777654444332 13555433


Q ss_pred             HHHHHHHHHhh----------------------CChHhH-HHH--------HhcC--cHHHHHHhhc----------cCc
Q psy355          127 KSLYAVSCLVR----------------------DNEECL-KEF--------IKRD--GFSVLLRCIQ----------SKK  163 (285)
Q Consensus       127 ~a~~ALs~l~r----------------------~~~~~~-~~f--------~~~~--gi~~L~~~L~----------~~~  163 (285)
                       .+-.|..+..                      =+|... +.|        -+.+  .+..|+++|+          +.|
T Consensus       337 -dl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D  415 (477)
T d1ho8a_         337 -DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  415 (477)
T ss_dssp             -HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             -HHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCC
Confidence             2333333221                      123222 223        2222  3567888886          347


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          164 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       164 ~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                      +.+..-||+=|+.++...|.-+..+-+.|+=..++.++.++   |++++..||.|+..++..+
T Consensus       416 ~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~---d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         416 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS---DSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS---SHHHHHHHHHHHHHHHHHS
T ss_pred             cceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999989999999999   9999999999999887543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.08  E-value=0.021  Score=42.94  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=60.9

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR  137 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r  137 (285)
                      ++..|.+-|++++|.++..|+.+|-.++.|. +.++..+...+.+..|.+++++.++..|+.+++..|-.-..
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            3566777889999999999999999999995 66788888889999999999877788999999877776554

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.046  Score=40.92  Aligned_cols=110  Identities=11%  Similarity=0.075  Sum_probs=77.9

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~  101 (285)
                      +.+.++..+++..+.++. .+.-++.+++.. .+.+.+     ++..|.+=|+|+++.++..|+.+|-.++.| .+.++.
T Consensus         9 ~e~~iekAT~~~l~~~dw-~~ileicD~I~~~~~~~k~-----a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~   82 (145)
T d1ujka_           9 LEARINRATNPLNKELDW-ASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD   82 (145)
T ss_dssp             HHHHHHHHTCTTCSSCCH-HHHHHHHHHHTSSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCH-HHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            344556666665433222 334445555533 222333     355566668899999999999999999999 499999


Q ss_pred             HHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhhCC
Q psy355          102 FIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      .+.+.+.+..|++++..     ..+..|+.+++..|-.-..+.
T Consensus        83 evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          83 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            99999999999999962     256789999988887765544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.84  E-value=0.14  Score=43.65  Aligned_cols=185  Identities=16%  Similarity=0.160  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhc----CcchHHHHHHcCCHHHHHh----hhc
Q psy355            6 RGFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVC----SIDYANDFLKMGGLPVLQP----LLE   75 (285)
Q Consensus         6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~----~~dna~~~~~~Gg~~~Lv~----lL~   75 (285)
                      -+||... ........+.|+...+.+..+.  .....+..++-.+..++.    +.+...    ...++.+..    .+.
T Consensus       108 ~~~l~~l-~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~----~~~~~~l~~~l~~~~~  182 (336)
T d1lsha1         108 TQIVAST-LSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSD  182 (336)
T ss_dssp             HHHHHHH-HHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHH
T ss_pred             HHHHHHH-hccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHhhc
Confidence            3455543 3333445677777777776543  223333444444444332    111111    112333333    445


Q ss_pred             CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHhhCChHhHHHHHhc
Q psy355           76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH------DSNTTVQVKSLYAVSCLVRDNEECLKEFIKR  149 (285)
Q Consensus        76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~------~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~  149 (285)
                      .++.+-+..++++|||+-  .|         +.++.|..++..      ..+..+|..|+||+.++....|.....+.  
T Consensus       183 ~~~~~~~~~~LkaLGN~g--~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l--  249 (336)
T d1lsha1         183 RAKEEEIVLALKALGNAG--QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIV--  249 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHT--CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHH--
T ss_pred             ccchHHHHHHHHHHhccC--CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHH--
Confidence            677788888999999986  33         357777777753      23568999999999999888775544333  


Q ss_pred             CcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355          150 DGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       150 ~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~  226 (285)
                            ..++.+  .+..+|..|..++-.   .+|..       ..+..+...+..+  .+.++.-.+...|.++....
T Consensus       250 ------~~i~~n~~e~~EvRiaA~~~lm~---t~P~~-------~~l~~i~~~l~~E--~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         250 ------LPIFLNVAIKSELRIRSCIVFFE---SKPSV-------ALVSMVAVRLRRE--PNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             ------HHHHHCTTSCHHHHHHHHHHHHH---TCCCH-------HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTCC
T ss_pred             ------HHHHcCCCCChHHHHHHHHHHHh---cCCCH-------HHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhCC
Confidence                  444443  378899888776643   34422       3566777777654  37888889999999988755

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.75  E-value=0.0025  Score=52.26  Aligned_cols=126  Identities=13%  Similarity=0.034  Sum_probs=69.0

Q ss_pred             hhhcCCCHHHHHHHHHH------HHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355           72 PLLEGSDPELRWRAAET------VADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE  145 (285)
Q Consensus        72 ~lL~s~~~~vr~~A~~~------lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~  145 (285)
                      .+|.+|+.++|..|++-      +.-+.-.++.++..+...=+.+.|..++. +++..||..++..+             
T Consensus        49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~-D~d~~VR~~aa~~l-------------  114 (233)
T d1lrva_          49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMF-DEDREVRITVADRL-------------  114 (233)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTT-CSCHHHHHHHHHHS-------------
T ss_pred             HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhc-CCChhHHHHHHhcc-------------
Confidence            48999999999888862      22122245555555544322233444444 35556665554433             


Q ss_pred             HHhcCcHHHHHHhhccCcHHHHHHHHHHH-----HHHhc-CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355          146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLI-----ACLCT-DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL  219 (285)
Q Consensus       146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l-----~~L~~-~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL  219 (285)
                           ..+.|..++.+++..||..++..+     .-++. .++.++..+...-..+.|..+++.+   ++.++..++..|
T Consensus       115 -----~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~---d~~VR~~aa~~L  186 (233)
T d1lrva_         115 -----PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDP---EPEVRRIVASRL  186 (233)
T ss_dssp             -----CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCS---SHHHHHHHHHHC
T ss_pred             -----CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCC---CHHHHHHHHHhc
Confidence                 234455566666667766665431     11111 2345555555444456666667666   777777776543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.048  Score=40.75  Aligned_cols=74  Identities=9%  Similarity=-0.016  Sum_probs=61.3

Q ss_pred             CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhhCC
Q psy355           66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus        66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      ++..|.+=|+|++|.++..|+.++-.++.|. +.++..+...+.+..|++++..     ..+..|+.+++..|-.-...+
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3455666688999999999999999999995 8888999999999999999973     356789999988877765544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.81  Score=38.30  Aligned_cols=151  Identities=13%  Similarity=0.209  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC---cHHHHHHh
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTS  115 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g---~l~~L~~L  115 (285)
                      +.-..+-.-|.+++.--.-|.-+.....+..+..+.+.++-+|..-|..++-.+-+.++..-..++..+   .+..+-+|
T Consensus       129 eiAl~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~L  208 (330)
T d1upka_         129 EIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKL  208 (330)
T ss_dssp             TTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHH
Confidence            444555555666665555566677778888899999999999999999999999999987666666654   66677788


Q ss_pred             hccCCCHHHHHHHHHHHHHHh--hCChHhHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHH
Q psy355          116 IEHDSNTTVQVKSLYAVSCLV--RDNEECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLL  189 (285)
Q Consensus       116 L~~~~~~~v~~~a~~ALs~l~--r~~~~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~  189 (285)
                      |.+ ++-.+|+.++--|+.+.  |.|......++.. .-+..++.+|++.+..+|-+|-..+.=++.+   .+.+...++
T Consensus       209 L~s-~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~  287 (330)
T d1upka_         209 LHS-ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL  287 (330)
T ss_dssp             TTC-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             hcC-CchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHH
Confidence            886 67899999999999998  4455555556643 3578899999999999999999888877665   234455554


Q ss_pred             H
Q psy355          190 S  190 (285)
Q Consensus       190 ~  190 (285)
                      .
T Consensus       288 ~  288 (330)
T d1upka_         288 K  288 (330)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.14  Score=38.39  Aligned_cols=110  Identities=12%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN  101 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~  101 (285)
                      +.+.++..+++..+.++-...+ ++.+++.. .+.+.+     ++..|.+=|++++|.++..|+.+|-.++.|. +.++.
T Consensus         3 le~~i~kAT~~~l~~~dw~~il-eicD~In~~~~~~k~-----a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~   76 (151)
T d1juqa_           3 LESWLNKATNPSNRQEDWEYII-GFCDQINKELEGPQI-----AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN   76 (151)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHH-HHHHHHHHSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHH-HHHHHHhcCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3445566666664333322222 23333321 122332     3556666678999999999999999999995 77788


Q ss_pred             HHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhhCC
Q psy355          102 FIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVRDN  139 (285)
Q Consensus       102 ~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r~~  139 (285)
                      .+.....+..|++++..     ..+..|+.+.+..|-.-....
T Consensus        77 evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          77 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            88888999999999974     246689999988887766544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.27  Score=46.42  Aligned_cols=138  Identities=12%  Similarity=0.121  Sum_probs=99.5

Q ss_pred             HHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHHHHHHHHhhC------
Q psy355           67 LPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVRD------  138 (285)
Q Consensus        67 ~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r~------  138 (285)
                      ++.+..+|. |.+|+.|.+|=.-|-.+- ++|         |.+..|++++.+.. +..+|.-|+-.+-|.++.      
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            456677654 688889999988887764 445         56777888877543 568999999888888753      


Q ss_pred             ----ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHH
Q psy355          139 ----NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNE  213 (285)
Q Consensus       139 ----~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e  213 (285)
                          -++..+..++.    .|+.+|.+++..+|...+.+++.++.. .|+..     .++++.|..++.++   ++..+.
T Consensus        74 ~~~~i~~e~k~~Ik~----~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~---~~~~~~  141 (959)
T d1wa5c_          74 GNHLLPANNVELIKK----EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSND---DMVTNK  141 (959)
T ss_dssp             SCBSSCHHHHHHHHH----HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSS---CTTHHH
T ss_pred             ccCCCCHHHHHHHHH----HHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhCCC---CHHHHH
Confidence                12333444433    445555567889999999999988764 23221     26788899999988   889999


Q ss_pred             HHHHHHHHHHhcC
Q psy355          214 HLLSALASLIKDS  226 (285)
Q Consensus       214 ~al~aL~~l~~~~  226 (285)
                      .++.+|..+++..
T Consensus       142 ~~L~~l~~i~k~~  154 (959)
T d1wa5c_         142 GVLTVAHSIFKRW  154 (959)
T ss_dssp             HHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998653

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.15  E-value=0.44  Score=40.47  Aligned_cols=108  Identities=11%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             HHhhccCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc-----------CcHHHHHHHHHHHHHHhcC
Q psy355          113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCTD  180 (285)
Q Consensus       113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~-----------~~~~v~~ka~~~l~~L~~~  180 (285)
                      +..|.+.....-..+.+..|.--.|++|.. .+.| ..+|+..|+.+|..           .+...+..+..++..++..
T Consensus         8 v~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~   86 (343)
T d2bnxa1           8 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN   86 (343)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc
Confidence            344444333333334444444446665543 5667 57899888887741           1467888999999999988


Q ss_pred             CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355          181 NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK  224 (285)
Q Consensus       181 ~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~  224 (285)
                      .+.....+-..+++..++..|.++   .+.++..|+..|..++-
T Consensus        87 ~~G~~~vl~~~~~i~~l~~~L~s~---~~~tr~~a~elL~~lc~  127 (343)
T d2bnxa1          87 KFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAAKLLSALCI  127 (343)
T ss_dssp             HHHHHHHHHSSSHHHHHHHTCCTT---SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcChHHHHHHHHccCCC---chHHHHHHHHHHHHHHh
Confidence            777777777889999999999998   99999999999988874

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.44  Score=35.27  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=80.5

Q ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHH
Q psy355          109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQV  187 (285)
Q Consensus       109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~  187 (285)
                      +..++.-..++...+.-..+.-.|+.+++..+....     .++..|..=|+++++.++..|..++-.++.+ ++.+...
T Consensus         9 ~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k-----~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~e   83 (145)
T d1ujka_           9 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE   83 (145)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            334444444332222334667778888877654322     2355677778899999999999999988877 7899999


Q ss_pred             HHHCCcHHHHHHhcccC---CCCCccHHHHHHHHHHHHHhcCh
Q psy355          188 LLSMGMVEQMCVLIDIE---DALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       188 l~~~g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +.+.+++..|+.++...   +..+..++++++..|..-....|
T Consensus        84 vas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          84 VGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            99999999999998631   11266899999999987765543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.32  Score=35.95  Aligned_cols=97  Identities=9%  Similarity=0.055  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      -.+.-.|+.+++..+....     ..+..|..=|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus        19 w~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k   93 (143)
T d1mhqa_          19 WSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK   93 (143)
T ss_dssp             HHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence            4556667777765544321     2345566778889999999999999888876 688888898899999999998742


Q ss_pred             ---CCCCccHHHHHHHHHHHHHhcCh
Q psy355          205 ---DALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       205 ---~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                         ...+..++++++..+...+...+
T Consensus        94 ~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          94 YLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence               12367899999999988776553

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.50  E-value=0.25  Score=46.62  Aligned_cols=179  Identities=11%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH------------HHHHHhc
Q psy355           39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS------------QNFIIQT  106 (285)
Q Consensus        39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~------------q~~v~~~  106 (285)
                      -.+..++..+..+++... ...+.  ..++.++.+|+++++.||..|++++..++......            +..+  .
T Consensus       473 ~lr~~~~~~i~~~~~~~~-~~~~~--~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l--~  547 (959)
T d1wa5c_         473 ILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST--E  547 (959)
T ss_dssp             HHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH--H
T ss_pred             HHHHHHHHHHHHHHhhcc-HHHHH--HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH--H
Confidence            345566666766665432 22222  35788899999999999999999999998532210            0011  1


Q ss_pred             CcHHHHHHhhccCCCHH----HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh----ccC-cHHHHHHHHHHHHHH
Q psy355          107 DFLNLLLTSIEHDSNTT----VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI----QSK-KEKLVIKSCFLIACL  177 (285)
Q Consensus       107 g~l~~L~~LL~~~~~~~----v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L----~~~-~~~v~~ka~~~l~~L  177 (285)
                      ..+..|+..+.......    ....++.+|+.++.........+. ...++.|...+    +.+ +......+.-+++.+
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l  626 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            23444555554322111    123366677766543222111111 01123333322    222 467777777777777


Q ss_pred             hcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355          178 CTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST  227 (285)
Q Consensus       178 ~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~  227 (285)
                      +.. +++....+. ..+++.+...+...   ..++.+.++..+..+...++
T Consensus       627 ~~~~~~~~~~~l~-~~l~p~i~~~~~~~---~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         627 LNYTQRQNLPLLV-DSMMPTFLTVFSED---IQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHTSCGGGHHHHH-HHHHHHHHHHHHTT---CTTTHHHHHHHHHHHHHHCS
T ss_pred             HHhcCchhHHHHH-HHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHhCC
Confidence            654 444444433 45677777878776   77788888888888776653

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=2.4  Score=31.25  Aligned_cols=107  Identities=14%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhh-cCCCHHHHHHHHHHHHHHhhCC-HHHH
Q psy355           24 LEKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVADIVQNN-PFSQ  100 (285)
Q Consensus        24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL-~s~~~~vr~~A~~~lg~~a~nn-~~~q  100 (285)
                      +.+.++..+++..+.++-...++ +.+++ .+.+.+.+     ++..|.+=| .+.++.++..|+.+|..++.|. +.++
T Consensus        13 ~~~~vekAT~~~l~~~dw~~il~-icD~In~~~~~~k~-----a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh   86 (153)
T d1elka_          13 VGQRIEKATDGSLQSEDWALNME-ICDIINETEEGPKD-----ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFH   86 (153)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHH-HHHHHHHSSSHHHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHcCCCCCcccHHHHHH-HHHHHhCCCcCHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHH
Confidence            45556666676654333333333 33333 22232333     355566645 5679999999999999999994 7888


Q ss_pred             HHHHhcCcHHHH-HHhhcc--CCCHHHHHHHHHHHHHHh
Q psy355          101 NFIIQTDFLNLL-LTSIEH--DSNTTVQVKSLYAVSCLV  136 (285)
Q Consensus       101 ~~v~~~g~l~~L-~~LL~~--~~~~~v~~~a~~ALs~l~  136 (285)
                      ..+.+.+.+..+ +..+..  ..+..|+.+++..|-...
T Consensus        87 ~evas~~Fl~~ll~~~~~~~~~~~~~Vk~kil~li~~W~  125 (153)
T d1elka_          87 VLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA  125 (153)
T ss_dssp             HHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            889888888875 444443  245578999887776654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.31  E-value=0.36  Score=35.69  Aligned_cols=94  Identities=9%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355          126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE  204 (285)
Q Consensus       126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~  204 (285)
                      -.+.-.|+.+++..+....     ..+..|.+-|+++++.++..|..++-.++.+ ++.+...+.+.+++..|..++.+.
T Consensus        23 w~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~   97 (145)
T d1dvpa1          23 WPSILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST   97 (145)
T ss_dssp             HHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCC
Confidence            4566677777776554322     2345677778899999999999999988876 577777887888999999988764


Q ss_pred             CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 ~~~d~~~~e~al~aL~~l~~~~  226 (285)
                        .+..++++++..+.......
T Consensus        98 --~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          98 --PHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHHHHHHHh
Confidence              26689999999988876544

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=1.1  Score=33.23  Aligned_cols=95  Identities=9%  Similarity=0.127  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC-
Q psy355          127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-  204 (285)
Q Consensus       127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~-  204 (285)
                      .+...|+.+++..+...+     .++..|.+=|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++... 
T Consensus        21 ~~ileicD~In~~~~~~k-----~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~   95 (151)
T d1juqa_          21 EYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY   95 (151)
T ss_dssp             HHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccC
Confidence            455566666665543322     2345667778888999999999999988876 678888888889999999998752 


Q ss_pred             --CCCCccHHHHHHHHHHHHHhcC
Q psy355          205 --DALDTEMNEHLLSALASLIKDS  226 (285)
Q Consensus       205 --~~~d~~~~e~al~aL~~l~~~~  226 (285)
                        +..+..++++++..+..-+...
T Consensus        96 ~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          96 LGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHc
Confidence              1125679999999988876554

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.45  E-value=9.6  Score=29.21  Aligned_cols=167  Identities=7%  Similarity=-0.065  Sum_probs=96.4

Q ss_pred             HHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC-CCHHH
Q psy355            3 EANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG-SDPEL   81 (285)
Q Consensus         3 ~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s-~~~~v   81 (285)
                      |++|+-.++.++.....+.+.+.+.+..|=+... -|.+..|+.-|.......+. .+      ++.+..++.+ ++-++
T Consensus        30 P~~r~laK~~~k~~~~~~~~~~~~l~~~L~~~~~-~E~r~~a~~ll~~~~~~~~~-~~------l~~~~~~~~~~~~Wd~  101 (213)
T d2b6ca1          30 PERQALSKQLLKESHTWPKEKLCQEIEAYYQKTE-REYQYVAIDLALQNVQRFSL-EE------VVAFKAYVPQKAWWDS  101 (213)
T ss_dssp             HHHHHHTHHHHHHHTTSCHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCH-HH------HHHGGGGTTTTCSHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcCch-HHHHHHHHHHHHHHHhccCH-HH------HHHHHHHHccCccHHH
Confidence            6777777788877754445555555544433222 46778888777776654332 12      4445556655 44555


Q ss_pred             HHHHHHHH-HHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355           82 RWRAAETV-ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ  160 (285)
Q Consensus        82 r~~A~~~l-g~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~  160 (285)
                      .-..+..+ |.+..+.+.         ..+.+.....+ .+.=+|+.|+-+.=...+...  ...     .+..+..++.
T Consensus       102 vD~~~~~i~~~~~~~~~~---------~~~~l~~w~~s-~~~w~rR~aiv~~l~~~~~~~--~~~-----~~~~~~~~~~  164 (213)
T d2b6ca1         102 VDAWRKFFGSWVALHLTE---------LPTIFALFYGA-ENFWNRRVALNLQLMLKEKTN--QDL-----LKKAIIYDRT  164 (213)
T ss_dssp             HHHHHHHHHHHHHHSGGG---------HHHHHHHHTTC-SSHHHHHHHHHTTTTCGGGCC--HHH-----HHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhhhh---------HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHccc--HHH-----HHHHHHHhCC
Confidence            55555444 334433322         23445555554 677777765433211122111  111     1345556677


Q ss_pred             cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355          161 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV  194 (285)
Q Consensus       161 ~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v  194 (285)
                      ++..-+|+...|+|+.+...+|+....+++...+
T Consensus       165 d~e~~i~kAigW~Lre~~k~~p~~v~~fl~~~~L  198 (213)
T d2b6ca1         165 TEEFFIQKAIGWSLRQYSKTNPQWVEELMKELVL  198 (213)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHSCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHCHHHHHHHHHhCCC
Confidence            7789999999999999999998777776655533