Psyllid ID: psy3567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MQVLTEDFGWDPSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHccccccEEEEccccccccHHHHHccccccEEEccccccccccHHHHHHHHcccEEEccccccccccHHHHcccccccccccccccccccHHHHcccccccccccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEccccccccccHHHHccccccEEEccccccccccccHHHHccccccEEEccccccccccccEEEccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccccccccHHHHHHccHHHHHHHccccccccHHHHHcccccEEEccccccccccHHHHHHHHHHcEEcccccccccccHHHHHHccccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccccccccccccEEEccccccccccccHHHccEEEEEccccccccccHHHHHHccccEEEcccccEEcccccHHHHHHccccEEEccccccccccHHHHHHHHcccEEEccccEEEc
Coil and Loop (DISEMBL)
mqvltedfgwdpsspskltlllpgkknrgliEGTIFVLKMGNSATKRHFETAKKTGVinlshqgfkefpDEMNELKAVLRTLDIsqnkiskfpldLASYQLLKSLtfdqnkieslpkdigtLEKLENVsgncnlikelplsfsklhnlkhlslsqnqlnkfptvlfnlqhldvldlsfnriesipdgiGKMKVIEMNLNknqichispdiseCVRLKILRLEENClainaiptciltssnvctlnvegnLFEMKAFqqldgynnymdselqrsglli
Flexible Loop (DISEMBL)
mqvltedfgwdpsspskltlllpgkknrgLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Low Complexity Region (SEG)
MQVLTEDFGWDpsspskltlllpgkkNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPlsfsklhnlkhlslsQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Disordered region (IsUnstruct)
******************TLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNY************
Disordered Region (DISOPRED)
******************TLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Disordered Region (DISEMBL)
MQVLTEDFGWDPSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Disordered Region (DISPRO)
*QVLTEDFGWDPSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVLTEDFGWDPSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q8N9N7	239	Leucine-rich repeat-conta	yes	N/A	0.823	0.953	0.532	2e-61
Q5FVI3	239	Leucine-rich repeat-conta	yes	N/A	0.823	0.953	0.528	3e-61
Q9D1G5	239	Leucine-rich repeat-conta	yes	N/A	0.823	0.953	0.524	7e-61
Q6DHL5	238	Leucine-rich repeat-conta	yes	N/A	0.823	0.957	0.508	3e-60
Q6INV3	238	Leucine-rich repeat-conta	N/A	N/A	0.823	0.957	0.5	2e-58
Q96II8	777	Leucine-rich repeat and c	no	N/A	0.743	0.265	0.303	3e-18
Q9Y4C4	1052	Malignant fibrous histioc	no	N/A	0.823	0.216	0.290	1e-17
Q14160	1630	Protein scribble homolog	no	N/A	0.711	0.120	0.285	3e-17
Q7SXW3	601	Leucine-rich repeat-conta	no	N/A	0.682	0.314	0.331	5e-17
Q80U72	1612	Protein scribble homolog	no	N/A	0.714	0.122	0.28	1e-16

>sp|Q8N9N7|LRC57_HUMAN Leucine-rich repeat-containing protein 57 OS=Homo sapiens GN=LRRC57 PE=1 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 164/229 (71%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP ++ +L + LRT+D+S NKI   P L +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+  LP +I  L+KLE +S N N ++ELP +F +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNNNKLTVLPDEICNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P  L +L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLKI
Sbjct: 121 GALPPQLCSLRHLDVMDLSKNQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLKI 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 229

Homo sapiens (taxid: 9606)

>sp|Q5FVI3|LRC57_RAT Leucine-rich repeat-containing protein 57 OS=Rattus norvegicus GN=Lrrc57 PE=2 SV=1

 Score =  235 bits (599), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/229 (52%), Positives = 163/229 (71%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP E+ +L + LRT+D+S NKI   P L +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+  LP ++  L+KLE +S N N ++ELP SF +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSSFGQLSALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P  L +L+HLDV+DLS N+I SIPD +G+++ IE+NLN+NQI  IS  IS C RLK+
Sbjct: 121 GALPPQLCSLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQISVRISCCPRLKV 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 229

Rattus norvegicus (taxid: 10116)

>sp|Q9D1G5|LRC57_MOUSE Leucine-rich repeat-containing protein 57 OS=Mus musculus GN=Lrrc57 PE=2 SV=1

 Score =  234 bits (596), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 163/229 (71%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP E+ +L + LRT+D+S NKI   P L +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+  LP ++  L+KLE +S N N ++ELP +F +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P  L  L+HLDV+DLS N+I SIPD +G+++ IE+NLN+NQI  +S  IS C RLK+
Sbjct: 121 GALPPQLCCLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQLSVKISCCPRLKV 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K F++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKFRELEGYDKYME 229

Mus musculus (taxid: 10090)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 162/228 (71%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY 99
           MGNSA K H ET++KTGV  L+ +G  EFP+++ +L A LRT+D+S NKI + P  + S+
Sbjct: 1   MGNSALKAHLETSQKTGVFQLTGKGLTEFPEDLQKLTANLRTVDLSNNKIEELPAFIGSF 60

Query: 100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
           Q LKS T   NK+ SLP DIG L+KLE +  N N +K+LP S  +L +L+ LSLS NQ  
Sbjct: 61  QHLKSFTISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFK 120

Query: 160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
           +FP+ L  L+ LDVLDLS N+I  +P  + +++ IE+NLN+NQI  ++ ++S   RLK+L
Sbjct: 121 EFPSGLGTLRQLDVLDLSKNQIRVVPAEVAELQAIEINLNQNQISSVTQEVSRTPRLKVL 180

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           RLEENCL +++IP  ILT S V  L+VEGNLFE+K  + L+GY+ YM+
Sbjct: 181 RLEENCLELSSIPLSILTDSQVSLLSVEGNLFEVKKMRDLEGYDKYME 228

Danio rerio (taxid: 7955)

>sp|Q6INV3|LRC57_XENLA Leucine-rich repeat-containing protein 57 OS=Xenopus laevis GN=lrrc57 PE=2 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/228 (50%), Positives = 157/228 (68%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY 99
           MGNSA K H ETA+KTGV  L+ +G  EFP+++  L   LRT+D+S NKI   P  +  +
Sbjct: 1   MGNSALKAHIETAQKTGVFQLTDKGLTEFPEDLQRLSGNLRTIDLSSNKIEVVPPMMGKF 60

Query: 100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
            LLKSL+ + N+I  LP ++  L+KLE +  N N I +LP  F +L  LK L+LS N+L 
Sbjct: 61  SLLKSLSLNNNRISRLPDELCKLKKLETLHLNGNQISQLPADFVQLLALKTLNLSGNRLK 120

Query: 160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
             P  LF L++LDV+DLS NRI++IPD +  ++ IE+NLN+NQI  IS +IS C RLK+L
Sbjct: 121 TLPAQLFKLRNLDVVDLSKNRIQAIPDEVSGLQAIELNLNQNQISQISVNISHCPRLKVL 180

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           RLEENCL ++ +P  IL+ S +  L VEGNLFE+K  + L+GY+ YM+
Sbjct: 181 RLEENCLELSMLPPSILSDSQISLLAVEGNLFEIKKLRDLEGYDKYME 228

Xenopus laevis (taxid: 8355)

>sp|Q96II8|LRCH3_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 118/214 (55%), Gaps = 8/214 (3%)

Query: 47  RHFETAKKTGVINLSHQGFKEFPDEM--NELKAVLRTLDISQNKISKFPLDLASYQLLKS 104
           R  E A  TGV++LS +  +EFP     ++L    R  D+S+N++S+ P++   +  L++
Sbjct: 51  RALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRA-DLSRNRLSEIPIEACHFVSLEN 109

Query: 105 LTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV 164
           L   QN I  +P+ I  L+ L  ++ + N +  LP+    L  LK L  S N+L   P  
Sbjct: 110 LNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNL-PLKVLIASNNKLVSLPEE 168

Query: 165 LFNLQHLDVLDLSFNRIESIPDGIGKMKVI-EMNLNKNQICHISPDISECVRLKILRLEE 223
           + +L+HL  LD+S N I++IP  IG ++ + ++N+ +N + H+  +++E   L ++RL+ 
Sbjct: 169 IGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPEELAE---LPLIRLDF 225

Query: 224 NCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ 257
           +C  I  IP C     ++ T+ ++ N  +    Q
Sbjct: 226 SCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQ 259

Homo sapiens (taxid: 9606)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 20/248 (8%)

Query: 14  SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTG-------VINLSHQGFK 66
           SP+   L+LP   N G IE     L +GN+  +   E  +  G       V+ L    F 
Sbjct: 50  SPASPQLVLPA--NLGDIEA----LNLGNNGLE---EVPEGLGSALGSLRVLVLRRNRFA 100

Query: 67  EFPDEMNELKAVLRTLDISQNKISKFPLDLAS-YQLLKSLTFDQNKIESLPKDIGTLEKL 125
             P  + EL   L  LD+S N+++    ++ S  + L+ L    N++ +LP  +G L  L
Sbjct: 101 RLPPAVAELGHHLTELDVSHNRLTALGAEVVSALRELRKLNLSHNQLPALPAQLGALAHL 160

Query: 126 ENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
           E +  + N +  LP S S L  L+ L +  NQL  FP  L  L  L+ LD+S NR+  +P
Sbjct: 161 EELDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLLQLVALEELDVSSNRLRGLP 220

Query: 186 DGIGKMKVIE-MNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTL 244
           + I  ++ ++ + L+  ++  +     E   L+ L L+ N   + A+P        +  L
Sbjct: 221 EDISALRALKILWLSGAELGTLPAGFCELASLESLMLDNN--GLQALPAQFSCLQRLKML 278

Query: 245 NVEGNLFE 252
           N+  NLFE
Sbjct: 279 NLSSNLFE 286

Homo sapiens (taxid: 9606)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 27/224 (12%)

Query: 53  KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
           K   + + S       PD   +L++ L  L ++   +   P D+ +   L +L   +N +
Sbjct: 105 KALEIADFSGNPLSRLPDGFTQLRS-LAHLALNDVSLQALPGDVGNLANLVTLELRENLL 163

Query: 113 ESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
           +SLP  +  L KLE +    N ++ LP +   L NL+ L L +NQL+  P  L NL+ L 
Sbjct: 164 KSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLV 223

Query: 173 VLDLSFNRIES-----------------------IPDGIGKMKVIE-MNLNKNQICHISP 208
            LD+S NR+E                        +PDGIG++K +  + +++N++C ++ 
Sbjct: 224 CLDVSENRLEELPAELGGLVLLTDLLLSQNLLRRLPDGIGQLKQLSILKVDQNRLCEVTE 283

Query: 209 DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
            I +C  L  L L EN L   A+P  +   + +  LNV+ N  E
Sbjct: 284 AIGDCENLSELILTENLLM--ALPRSLGKLTKLTNLNVDRNHLE 325

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 44  ATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLK 103
           A  R +E    T ++ LS    +  PD++  L A++  LDI  N++S  P  +   + L+
Sbjct: 72  AEDRWWEQTDLTKLL-LSSNKLQSIPDDVKLLPALV-VLDIHDNQLSSLPDSIGDLEQLQ 129

Query: 104 SLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT 163
            L    NK+  LP  +  L  L  +    NLI+++P    +L NL  L LS N L   P 
Sbjct: 130 KLILSHNKLTELPSGVWRLTNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPE 189

Query: 164 VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILRLE 222
            L NLQ+L  LDLS N+++S+P  I +MK + M + ++NQ+  I P +++   L+ L L 
Sbjct: 190 SLANLQNLVKLDLSCNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLR 249

Query: 223 ENCLA-INAIPTC 234
            N L  +  +P C
Sbjct: 250 HNKLRYLPELPCC 262

Danio rerio (taxid: 7955)

>sp|Q80U72|SCRIB_MOUSE Protein scribble homolog OS=Mus musculus GN=Scrib PE=1 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 27/225 (12%)

Query: 53  KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
           K   + + S       PD   +L++ L  L ++   +   P D+ +   L +L   +N +
Sbjct: 105 KALEIADFSGNPLSRLPDGFTQLRS-LAHLALNDVSLQALPGDVGNLANLVTLELRENLL 163

Query: 113 ESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
           +SLP  +  L KLE +    N ++ LP +   L NL+ L L +NQL+  P  L NL+ L 
Sbjct: 164 KSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLV 223

Query: 173 VLDLSFNRIES-----------------------IPDGIGKMKVIE-MNLNKNQICHISP 208
            LD+S NR+E                        +P+GIG++K +  + +++N++C ++ 
Sbjct: 224 CLDVSENRLEELPVELGGLALLTDLLLSQNLLQRLPEGIGQLKQLSILKVDQNRLCEVTE 283

Query: 209 DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253
            I +C  L  L L EN L   A+P  +   + +  LNV+ N  E+
Sbjct: 284 AIGDCENLSELILTENLL--TALPHSLGKLTKLTNLNVDRNHLEV 326

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
348579451	281	PREDICTED: LOW QUALITY PROTEIN: leucine-	0.938	0.925	0.498	2e-61
440898999	239	Leucine-rich repeat-containing protein 5	0.823	0.953	0.524	1e-60
441615576	263	PREDICTED: leucine-rich repeat-containin	0.826	0.870	0.530	2e-60
426233056	239	PREDICTED: leucine-rich repeat-containin	0.823	0.953	0.524	2e-60
397467924	263	PREDICTED: leucine-rich repeat-containin	0.826	0.870	0.530	2e-60
383864500	238	PREDICTED: leucine-rich repeat-containin	0.823	0.957	0.504	2e-60
156549874	238	PREDICTED: leucine-rich repeat-containin	0.823	0.957	0.521	2e-60
390480998	296	PREDICTED: leucine-rich repeat-containin	0.826	0.773	0.530	3e-60
403274482	239	PREDICTED: leucine-rich repeat-containin	0.823	0.953	0.532	4e-60
31874816	239	hypothetical protein [Homo sapiens]	0.823	0.953	0.532	7e-60

>gi|348579451|ref|XP_003475493.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 57-like [Cavia porcellus]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/269 (49%), Positives = 180/269 (66%), Gaps = 9/269 (3%)

Query: 3   VLTEDFGWDPSSPSKLTLLLPGK---KNRGLIEGTIFVLKMGNSATKRHFETAKKTGVIN 59
           V  E  G  P  P+++  LL G      R L  GT    KMGNSA + H ETA+KTGV  
Sbjct: 8   VRAEALGAHPR-PARVXDLLLGNLLFSERDLKRGT----KMGNSALRAHVETAQKTGVFQ 62

Query: 60  LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKD 118
           L  +G  EFP E+ +L + LRT+D+S NKI   P L +  + LLKSL+ + NK+  +P +
Sbjct: 63  LKDRGLTEFPAELQKLTSNLRTIDLSNNKIESLPPLLIGKFTLLKSLSLNSNKLTVVPDE 122

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
           +  L+KLE +S N N +++LP +F +L  LK LSLS NQL   P  L +L+HLDVLDLS 
Sbjct: 123 LCNLKKLEMLSLNNNHLRDLPATFGQLSALKTLSLSGNQLRALPPQLCSLRHLDVLDLSK 182

Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
           N+I SIPD IG+++VIE+NLN+NQI  IS  IS C RLK+LRLEENCL ++ +P  IL+ 
Sbjct: 183 NQIRSIPDLIGELQVIELNLNQNQISQISVKISSCPRLKVLRLEENCLELSMLPQSILSD 242

Query: 239 SNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 243 SQICLLAVEGNLFEIKKLRELEGYDKYME 271

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440898999|gb|ELR50382.1| Leucine-rich repeat-containing protein 57 [Bos grunniens mutus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 165/229 (72%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP E+ +L + LRT+D+S NKI   P + +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIENLPPMIIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+ +LP ++  L+KLE +S N N ++ELP +F +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNNNKLTALPDELCNLKKLETLSLNNNQLRELPSTFGQLSALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P  L +L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLK+
Sbjct: 121 RALPPQLCSLRHLDVVDLSKNQIRSIPDTVGELQVIELNLNQNQISQISVKISSCPRLKV 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 229

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|441615576|ref|XP_004088311.1| PREDICTED: leucine-rich repeat-containing protein 57 [Nomascus leucogenys]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 165/230 (71%), Gaps = 1/230 (0%)

Query: 39  KMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLA 97
           +MGNSA + H ETA+KTGV  L  +G  EFP ++ +L + LRT+D+S NKI   P L + 
Sbjct: 24  RMGNSALRAHVETAQKTGVFQLQDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIG 83

Query: 98  SYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ 157
            + LLKSL+ + NK+  LP +I  L+KLE +S N N ++ELP +F +L  LK LSLS NQ
Sbjct: 84  KFTLLKSLSLNSNKLTVLPDEICNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQ 143

Query: 158 LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK 217
           L   P  L +L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLK
Sbjct: 144 LGALPPQLCSLRHLDVMDLSKNQIRSIPDTVGELQVIELNLNQNQISQISVKISCCPRLK 203

Query: 218 ILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           ILRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 204 ILRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 253

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426233056|ref|XP_004010533.1| PREDICTED: leucine-rich repeat-containing protein 57 isoform 1 [Ovis aries] gi|426233058|ref|XP_004010534.1| PREDICTED: leucine-rich repeat-containing protein 57 isoform 2 [Ovis aries]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 166/229 (72%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP E+ +L + LRT+D+S NKI   P + +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIENLPPVIIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+ +LP ++  L+KLE +S N N ++ELP +F +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNNNKLTALPDELCNLKKLETLSLNNNQLRELPSTFGQLSALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P+ L +L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLK+
Sbjct: 121 RALPSQLCSLRHLDVVDLSKNQIRSIPDIVGELQVIELNLNQNQISQISVKISSCPRLKV 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 229

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397467924|ref|XP_003805650.1| PREDICTED: leucine-rich repeat-containing protein 57 isoform 1 [Pan paniscus] gi|410049068|ref|XP_003952688.1| PREDICTED: leucine-rich repeat-containing protein 57 [Pan troglodytes]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 165/230 (71%), Gaps = 1/230 (0%)

Query: 39  KMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLA 97
           +MGNSA + H ETA+KTGV  L  +G  EFP ++ +L + LRT+D+S NKI   P L + 
Sbjct: 24  RMGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIG 83

Query: 98  SYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ 157
            + LLKSL+ + NK+  LP +I  L+KLE +S N N ++ELP +F +L  LK LSLS NQ
Sbjct: 84  KFTLLKSLSLNNNKLTVLPDEICNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQ 143

Query: 158 LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK 217
           L   P  L +L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLK
Sbjct: 144 LGALPPQLCSLRHLDVMDLSKNQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLK 203

Query: 218 ILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           ILRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 204 ILRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 253

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383864500|ref|XP_003707716.1| PREDICTED: leucine-rich repeat-containing protein 57-like [Megachile rotundata]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 158/228 (69%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY 99
           MG+S  ++H+ETAKKTG + LS +   EFP ++  L  +LRTLD+S+NK ++ P D+ ++
Sbjct: 1   MGSSGLRQHYETAKKTGTLKLSQRKLDEFPHDLRALAPLLRTLDLSENKFTRIPDDIGNF 60

Query: 100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
            LLK L    NK+ +LP+ +G L KLE +  + N I+ +P S SKL  LKH++LS NQ+ 
Sbjct: 61  TLLKQLNISHNKLIALPEALGKLTKLEGLYASSNQIRSIPWSVSKLTRLKHVNLSDNQIT 120

Query: 160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
           +FPT+   L  LDVLDLS NRI +IPD    + V+E+NLN+NQ+  IS  ++ C RLK L
Sbjct: 121 EFPTMFCYLNFLDVLDLSKNRITTIPDAAASLHVVELNLNQNQVSTISEKLANCSRLKTL 180

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           RLEENCL + AIP+ IL  S +  L+VEGNLFEMK F  LDGY+ YM+
Sbjct: 181 RLEENCLQLVAIPSKILKDSKISVLSVEGNLFEMKQFADLDGYDTYME 228

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549874|ref|XP_001601190.1| PREDICTED: leucine-rich repeat-containing protein 57-like [Nasonia vitripennis]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/228 (52%), Positives = 155/228 (67%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY 99
           MGN+  K HFE AKKTG +NLS +   EFP ++  L ++LRTLD+S NK SK PLD+  +
Sbjct: 1   MGNTGFKEHFEVAKKTGTLNLSRRKLDEFPQQLASLVSLLRTLDLSDNKFSKLPLDIGKF 60

Query: 100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
            LLK L    N++  LP  +G L KLE ++ N N I  LP S SKL +LK ++LS N++ 
Sbjct: 61  TLLKQLNVSGNRLTELPDVLGNLVKLETLNANSNQISVLPASLSKLSHLKMVNLSDNRIT 120

Query: 160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
            FP +   L+HLDVLDLS NR+ S+PDG+ ++ V E+NLN+NQI  IS  I++C RLK L
Sbjct: 121 AFPLMFCGLKHLDVLDLSHNRLTSVPDGVAELHVTELNLNQNQISEISEKIADCPRLKTL 180

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           R+EENCL I +I   IL  S +  L VEGNLFEMK F  LDGY+ YM+
Sbjct: 181 RIEENCLQIKSIHRRILEDSKISNLAVEGNLFEMKRFPDLDGYDKYME 228

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390480998|ref|XP_002763996.2| PREDICTED: leucine-rich repeat-containing protein 57, partial [Callithrix jacchus]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 165/230 (71%), Gaps = 1/230 (0%)

Query: 39  KMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLA 97
           +MGNSA + H ETA+KTGV  L  +G  EFP ++ +L + LRT+D+S NKI   P L + 
Sbjct: 57  RMGNSALRAHVETAQKTGVFQLKDRGMTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIG 116

Query: 98  SYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ 157
            + LLKSL+ + NK+  LP +I +L+KLE +S N N ++ELP +F +L  LK LSLS NQ
Sbjct: 117 KFTLLKSLSLNNNKLTVLPDEICSLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQ 176

Query: 158 LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK 217
           L   P  L  L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLK
Sbjct: 177 LGALPPQLCTLRHLDVVDLSKNQIRSIPDTVGQLQVIELNLNQNQISQISVKISCCPRLK 236

Query: 218 ILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           ILRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 237 ILRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 286

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403274482|ref|XP_003929005.1| PREDICTED: leucine-rich repeat-containing protein 57 [Saimiri boliviensis boliviensis]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 164/229 (71%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP ++ +L + LRT+D+S NKI   P L +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+  LP +I +L+KLE +S N N ++ELP +F +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNNNKLTVLPDEICSLKKLETLSLNSNHLRELPSTFGQLAALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P  L  L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLKI
Sbjct: 121 GALPPQLCTLRHLDVVDLSKNQIRSIPDTVGELQVIELNLNQNQISQISVKISCCPRLKI 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 229

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|31874816|emb|CAD98097.1| hypothetical protein [Homo sapiens]

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 164/229 (71%), Gaps = 1/229 (0%)

Query: 40  MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
           MGNSA + H ETA+KTGV  L  +G  EFP ++ +L + LRT+D+S NKI   P L +  
Sbjct: 1   MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGK 60

Query: 99  YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
           + LLKSL+ + NK+  LP +I  L+KLE +S N N ++ELP +F +L  LK LSLS NQL
Sbjct: 61  FTLLKSLSLNSNKLTVLPDEICNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQL 120

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
              P  L +L+HLDV+DLS N+I SIPD +G+++VIE+NLN+NQI  IS  IS C RLKI
Sbjct: 121 GALPPQLCSLRHLDVMDLSKNQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLKI 180

Query: 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K  ++L+GY+ YM+
Sbjct: 181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYME 229

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
MGI|MGI:1913856	239	Lrrc57 "leucine rich repeat co	0.823	0.953	0.489	2.6e-54
ZFIN|ZDB-GENE-040718-372	238	lrrc57 "leucine rich repeat co	0.823	0.957	0.478	3.8e-53
TAIR|locus:2142773	262	AT5G07910 "AT5G07910" [Arabido	0.801	0.847	0.277	3.4e-22
UNIPROTKB|Q96II8	777	LRCH3 "Leucine-rich repeat and	0.714	0.254	0.286	2.1e-18
ZFIN|ZDB-GENE-071004-44	525	zgc:171915 "zgc:171915" [Danio	0.732	0.386	0.265	3.3e-18
MGI|MGI:1917394	778	Lrch3 "leucine-rich repeats an	0.714	0.254	0.266	8.5e-17
MGI|MGI:2443390	709	Lrch1 "leucine-rich repeats an	0.761	0.297	0.276	3.2e-16
UNIPROTKB|E2R260	582	SHOC2 "Uncharacterized protein	0.689	0.328	0.295	4.7e-16
UNIPROTKB|A6QLV3	582	SHOC2 "Leucine-rich repeat pro	0.689	0.328	0.295	6e-16
UNIPROTKB|Q9UQ13	582	SHOC2 "Leucine-rich repeat pro	0.689	0.328	0.295	6e-16

MGI|MGI:1913856 Lrrc57 "leucine rich repeat containing 57" [Mus musculus (taxid:10090)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 112/229 (48%), Positives = 153/229 (66%)

Query:    40 MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLAS 98
             MGNSA + H ETA+KTGV  L  +G  EFP E+ +L + LRT+D+S NKI   P L +  
Sbjct:     1 MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGK 60

Query:    99 YQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQL 158
             + LLKSL+ + NK+  LP ++  L+KLE +S N N ++ELP                NQL
Sbjct:    61 FTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQL 120

Query:   159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
                P  L  L+HLDV+DLS N+I SIPD +G+++ IE+NLN+NQI  +S  IS C RLK+
Sbjct:   121 GALPPQLCCLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQLSVKISCCPRLKV 180

Query:   219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
             LRLEENCL ++ +P  IL+ S +C L VEGNLFE+K F++L+GY+ YM+
Sbjct:   181 LRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKFRELEGYDKYME 229

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-372 lrrc57 "leucine rich repeat containing 57" [Danio rerio (taxid:7955)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 109/228 (47%), Positives = 152/228 (66%)

Query:    40 MGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY 99
             MGNSA K H ET++KTGV  L+ +G  EFP+++ +L A LRT+D+S NKI + P  + S+
Sbjct:     1 MGNSALKAHLETSQKTGVFQLTGKGLTEFPEDLQKLTANLRTVDLSNNKIEELPAFIGSF 60

Query:   100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLN 159
             Q LKS T   NK+ SLP DIG L+KLE +  N N +K+LP                NQ  
Sbjct:    61 QHLKSFTISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFK 120

Query:   160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
             +FP+ L  L+ LDVLDLS N+I  +P  + +++ IE+NLN+NQI  ++ ++S   RLK+L
Sbjct:   121 EFPSGLGTLRQLDVLDLSKNQIRVVPAEVAELQAIEINLNQNQISSVTQEVSRTPRLKVL 180

Query:   220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
             RLEENCL +++IP  ILT S V  L+VEGNLFE+K  + L+GY+ YM+
Sbjct:   181 RLEENCLELSSIPLSILTDSQVSLLSVEGNLFEVKKMRDLEGYDKYME 228

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2142773 AT5G07910 "AT5G07910" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 63/227 (27%), Positives = 116/227 (51%)

Query:    41 GNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQ 100
             G S   R     + TG++ L     K FPDE+ E++  +RTLD++ NKI+  P +++   
Sbjct:    10 GGSKANR-ISRWRSTGIVGLRDSKLKTFPDEVIEMERAVRTLDLTHNKIADVPGEISKLI 68

Query:   101 LLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNK 160
              ++ L    N +E LP ++G L+ L+ +  + N I  LP               +N L  
Sbjct:    69 NMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLPDELGQLVRLEQLSISRNMLIY 128

Query:   161 FPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNLNKNQICHISPDISECVRLKIL 219
              P  + +L++L +L++S NR++S+P+ +G    +E +  N N +  +   +   ++LK L
Sbjct:   129 LPDTIGSLRNLLLLNVSNNRLKSLPESVGSCASLEEVQANDNVVEELPASLCNLIQLKSL 188

Query:   220 RLEENCLAINAIPTCILTS-SNVCTLNVEGNLFEMKAFQQLDGYNNY 265
              L+ N   +N IP  +L    ++  L++  N   M  FQ ++GY ++
Sbjct:   189 SLDNN--QVNQIPDGLLIHCKSLQNLSLHNNPISMDQFQLMEGYQDF 233

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q96II8 LRCH3 "Leucine-rich repeat and calponin homology domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 59/206 (28%), Positives = 110/206 (53%)

Query:    47 RHFETAKKTGVINLSHQGFKEFPDEM--NELKAVLRTLDISQNKISKFPLDLASYQLLKS 104
             R  E A  TGV++LS +  +EFP     ++L    R  D+S+N++S+ P++   +  L++
Sbjct:    51 RALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRA-DLSRNRLSEIPIEACHFVSLEN 109

Query:   105 LTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTV 164
             L   QN I  +P+ I  L+ L  ++ + N +  LP                N+L   P  
Sbjct:   110 LNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIAS-NNKLVSLPEE 168

Query:   165 LFNLQHLDVLDLSFNRIESIPDGIGKMKVI-EMNLNKNQICHISPDISECVRLKILRLEE 223
             + +L+HL  LD+S N I++IP  IG ++ + ++N+ +N + H+  +++E   L ++RL+ 
Sbjct:   169 IGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPEELAE---LPLIRLDF 225

Query:   224 NCLAINAIPTCILTSSNVCTLNVEGN 249
             +C  I  IP C     ++ T+ ++ N
Sbjct:   226 SCNKITTIPVCYRNLRHLQTITLDNN 251

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-071004-44 zgc:171915 "zgc:171915" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 56/211 (26%), Positives = 113/211 (53%)

Query:    42 NSATKRHFETAKKTGVINLSHQGFKEFPDEM--NELKAVLRTLDISQNKISKFPLDLASY 99
             N +  R  + A  TG +NLS +  KEFP     ++L    R  D+S+N++++ P+++  +
Sbjct:    45 NRSLDRALDEAAATGGLNLSGRKLKEFPRSAAGHDLTDTTRA-DLSRNRLTELPVEVCMF 103

Query:   100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLN 159
               L++L   QN + SLP+ +  L+ L  ++ + N +  LP                N+L 
Sbjct:   104 VSLENLNLYQNCLRSLPESLINLQSLTYLNLSRNQLSTLPAHLCRLPLKVLIAC-NNKLV 162

Query:   160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVI-EMNLNKNQICHISPDISECVRLKI 218
               P  L  L+ L  LD+S N I+++P  IG+++ + ++N+ +N +  + P+++E   L +
Sbjct:   163 SLPEDLGKLRQLTELDVSCNEIQTLPPQIGQLEALRDLNIRRNHLVRLPPELAE---LPL 219

Query:   219 LRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
             +RL+ +C  + +IP C     ++ ++ ++ N
Sbjct:   220 VRLDFSCNKVTSIPVCYRNLRHLQSIILDNN 250

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1917394 Lrch3 "leucine-rich repeats and calponin homology (CH) domain containing 3" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 55/206 (26%), Positives = 107/206 (51%)

Query:    47 RHFETAKKTGVINLSHQGFKEFPDEM--NELKAVLRTLDISQNKISKFPLDLASYQLLKS 104
             R  E A  TGV++LS +  +EFP     ++L    R  D+S+N++S+ P++   +  L+S
Sbjct:    51 RALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRA-DLSRNRLSEIPMEACHFVSLES 109

Query:   105 LTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTV 164
             L   QN I  +P+ +  L+ L  ++ + N +  LP                N+L   P  
Sbjct:   110 LNLYQNCIRYIPEAVLNLQALTFLNISRNQLSTLPVHLCNLPLKVLIAS-NNKLVSLPEE 168

Query:   165 LFNLQHLDVLDLSFNRIESIPDGIGKMKVI-EMNLNKNQICHISPDISECVRLKILRLEE 223
             + +L+HL  LD+S N I+++P  IG ++ + + N+ +N +  +  +++E   + ++RL+ 
Sbjct:   169 IGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLRLPEELAE---VPLIRLDF 225

Query:   224 NCLAINAIPTCILTSSNVCTLNVEGN 249
             +C  I  IP C     ++  + ++ N
Sbjct:   226 SCNKITVIPVCYRNLRHLQVITLDNN 251

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2443390 Lrch1 "leucine-rich repeats and calponin homology (CH) domain containing 1" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 61/221 (27%), Positives = 110/221 (49%)

Query:    33 GTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEM---NELKAVLRTLDISQNKI 89
             GT F L + N   +R  E A  +G +NLS +  KEFP      ++L   +R  D+S+N++
Sbjct:    42 GTGFNLPL-NRGLERALEEAANSGGLNLSARKLKEFPRTTAPGHDLSDTVRA-DLSKNRL 99

Query:    90 SKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXX 149
              + P++L  +  L+ L    N I  +P+ I  L+ L +++ + N +  LP          
Sbjct:   100 VEVPMELCQFVSLEILNLYHNCIRVIPEAIVNLQMLTHLNLSRNQLSALPACLCGLPLKV 159

Query:   150 XXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVI-EMNLNKNQICHISP 208
                   N+L   P  +  L+ L  LD+S N I ++P  IG++K + E+N+ +N +  + P
Sbjct:   160 LIAS-NNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPP 218

Query:   209 DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
             ++   V L +++ + +C  +  IP C      +  L +E N
Sbjct:   219 EL---VDLPLVKFDFSCNKVLVIPVCFREMKQLQVLLLENN 256

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R260 SHOC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 58/196 (29%), Positives = 93/196 (47%)

Query:    60 LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI 119
             L+       PD ++ LK  LR LD+  NK+ + P  +     L +L    N+I ++ KDI
Sbjct:   153 LNENSLTSLPDSLDNLKK-LRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDI 211

Query:   120 GTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFN 179
               L KL  +S   N IK+LP                NQL   P  + N   +  LDL  N
Sbjct:   212 KNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHN 271

Query:   180 RIESIPDGIGKMKVIE-MNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
              +  +PD IG +  +  + L  N++  I   +++C  L+ L LE N   I+A+P  +L+S
Sbjct:   272 ELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENN--NISALPESLLSS 329

Query:   239 S-NVCTLNVEGNLFEM 253
                + +L +  N F++
Sbjct:   330 LVKLNSLTLARNCFQL 345

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

UNIPROTKB|A6QLV3 SHOC2 "Leucine-rich repeat protein SHOC-2" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 58/196 (29%), Positives = 92/196 (46%)

Query:    60 LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI 119
             LS       PD ++ LK  LR LD+  NK+ + P  +     L +L    N+I ++ KDI
Sbjct:   153 LSENSLTSLPDSLDNLKK-LRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDI 211

Query:   120 GTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFN 179
               L KL  +S   N IK+LP                NQL   P  + N   +  LDL  N
Sbjct:   212 KNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHN 271

Query:   180 RIESIPDGIGKMKVIE-MNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
              +  +PD IG +  +  + L  N++  I   +++C  L+ L LE N   I+ +P  +L+S
Sbjct:   272 ELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENN--NISTLPESLLSS 329

Query:   239 S-NVCTLNVEGNLFEM 253
                + +L +  N F++
Sbjct:   330 LVKLNSLTLARNCFQL 345

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISS

UNIPROTKB|Q9UQ13 SHOC2 "Leucine-rich repeat protein SHOC-2" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 58/196 (29%), Positives = 92/196 (46%)

Query:    60 LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI 119
             LS       PD ++ LK  LR LD+  NK+ + P  +     L +L    N+I ++ KDI
Sbjct:   153 LSENSLTSLPDSLDNLKK-LRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDI 211

Query:   120 GTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFN 179
               L KL  +S   N IK+LP                NQL   P  + N   +  LDL  N
Sbjct:   212 KNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHN 271

Query:   180 RIESIPDGIGKMKVIE-MNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
              +  +PD IG +  +  + L  N++  I   +++C  L+ L LE N   I+ +P  +L+S
Sbjct:   272 ELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENN--NISTLPESLLSS 329

Query:   239 S-NVCTLNVEGNLFEM 253
                + +L +  N F++
Sbjct:   330 LVKLNSLTLARNCFQL 345

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0007265 "Ras protein signal transduction" evidence=NAS

GO:0019888 "protein phosphatase regulator activity" evidence=TAS

GO:0019903 "protein phosphatase binding" evidence=IDA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N9N7	LRC57_HUMAN	No assigned EC number	0.5327	0.8231	0.9539	yes	N/A
Q6DHL5	LRC57_DANRE	No assigned EC number	0.5087	0.8231	0.9579	yes	N/A
Q9D1G5	LRC57_MOUSE	No assigned EC number	0.5240	0.8231	0.9539	yes	N/A
Q5FVI3	LRC57_RAT	No assigned EC number	0.5283	0.8231	0.9539	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	277
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 73.8 bits (181), Expect = 5e-15
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 1/153 (0%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            ++L +    + P  +  LK+ L+ LD+S NKI   P  L +   LK+L    N +  LP
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
           K +  L  L N+  + N I +LP     L  L+ L LS N + +  + L NL++L  L+L
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL 239

Query: 177 SFNRIESIPDGIGKMKVIE-MNLNKNQICHISP 208
           S N++E +P+ IG +  +E ++L+ NQI  IS 
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
             L++S N +   P  L+    L  L+          +++  L  L ++  N N ++   
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109

Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLFNL-QHLDVLDLSFNRIESIPDGIGKMKVIEM-N 197
               +L NL  L L  N +   P ++  L  +L  LDLS N+IES+P  +  +  ++  +
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169

Query: 198 LNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
           L+ N +  +   +S    L  L L  N   I+ +P  I   S +  L++  N
Sbjct: 170 LSFNDLSDLPKLLSNLSNLNNLDLSGN--KISDLPPEIELLSALEELDLSNN 219

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 33/214 (15%)

Query: 67  EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNK-IESLPKDIGTLEK 124
           E P+++    + L+ LD+  N +  K P  L +   L+ LT   N+ +  +P+++G ++ 
Sbjct: 155 EIPNDIGSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213

Query: 125 LE-------NVSGNC------------------NLIKELPLSFSKLHNLKHLSLSQNQLN 159
           L+       N+SG                    NL   +P S   L NL++L L QN+L+
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 160 -KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIE-MNLNKNQIC-HISPDISECVR 215
              P  +F+LQ L  LDLS N +   IP+ + +++ +E ++L  N     I   ++   R
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 216 LKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
           L++L+L  N  +   IP  +   +N+  L++  N
Sbjct: 334 LQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 8/120 (6%)

Query: 65  FKEFPDEMNELKAVLRTLDISQNKISK-FPLDLASYQLLKSLTFDQNKIES-LPKDIGTL 122
           F   PD     +  L  LD+S+N+ S   P  L S   L  L   +NK+   +P ++ + 
Sbjct: 465 FGGLPDSFGSKR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 123 EKLENV--SGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFN 179
           +KL ++  S N  L  ++P SFS++  L  L LSQNQL+ + P  L N++ L  +++S N
Sbjct: 523 KKLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 138 LPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIE 195
           +P   SKL +L+ ++LS N +    P  L ++  L+VLDLS+N    SIP+ +G++  + 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 196 -MNLNKN 201
            +NLN N
Sbjct: 494 ILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQ 169
           N +  LP  +  L  L+ +S +     +   +   L  L  L L+ N+L    + L  L 
Sbjct: 57  NTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELT 116

Query: 170 HLDVLDLSFNRIESIPDGIGKMK--VIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227
           +L  LDL  N I  IP  IG +K  + E++L+ N+I  +   +     LK L L  N   
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--D 174

Query: 228 INAIPTCILTSSNVCTLNVEGNLFEM 253
           ++ +P  +   SN+  L++ GN    
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISD 200

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI-ESLPKDIGTLEKLE--NVSGNCNLI 135
           L+ L +++NK      D    + L++L   +N+   ++P+ +G+L +L    +S N  L 
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLS 512

Query: 136 KELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMK- 192
            E+P   S    L  L LS NQL+ + P     +  L  LDLS N++   IP  +G ++ 
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 193 VIEMNLNKN 201
           ++++N++ N
Sbjct: 573 LVQVNISHN 581

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
           +LS     + P E+  L A L  LD+S N I +    L++ + L  L    NK+E LP+ 
Sbjct: 192 DLSGNKISDLPPEIELLSA-LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
           IG L  LE +  + N I  +  S   L NL+ L LS N L+    ++  L  L  L L+ 
Sbjct: 251 IGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 40/246 (16%)

Query: 67  EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEK 124
           E P E+  L + L  LD+  N ++   P  L + + L+ L   QNK+   +P  I +L+K
Sbjct: 227 EIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 125 LENVSGNCN-LIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE 182
           L ++  + N L  E+P    +L NL+ L L  N    K P  L +L  L VL L  N+  
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 183 -SIPDGIGK---MKVIEMNLNK------NQIC-----------------HISPDISECVR 215
             IP  +GK   + V++++ N         +C                  I   +  C  
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 216 LKILRLEENCLA------INAIPTCIL--TSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
           L+ +RL++N  +         +P       S+N     +    ++M + Q L    N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 268 SELQRS 273
             L  S
Sbjct: 466 GGLPDS 471

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 124 KLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRI 181
            L+++  + N +  +P  +F  L NLK L LS N L       F  L  L  LDLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 115 LPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLD 172
           +P DI  L  L++++ + N I+  +P S   + +L+ L LS N  N   P  L  L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 173 VLDLSFNRIES-IPDGIGKMKV--IEMNLNKNQ-ICHISPDISEC 213
           +L+L+ N +   +P  +G   +     N   N  +C I P +  C
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRAC 537

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
            NL+ L LS NQ+   P  L NL +L+ LDLS N+I  + 
Sbjct: 1   TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            + LS     E P+    L + L++LD+  NKIS  P +L   + L+ L+   N I +LP
Sbjct: 245 EMELSINRITELPER---LPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP 299

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
             + +     NV  N   +  LP +      LK L   +N L   P  L     L VLD+
Sbjct: 300 AHLPSGITHLNVQSNS--LTALPETLPP--GLKTLEAGENALTSLPASL--PPELQVLDV 353

Query: 177 SFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227
           S N+I  +P+ +    +  +++++N + ++  ++     L+I++   N L 
Sbjct: 354 SKNQITVLPETLPPT-ITTLDVSRNALTNLPENLPAA--LQIMQASRNNLV 401

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG 187
           NLK L LS N+L   P   F  L +L VLDLS N + SI   
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 69  PDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128
           P+  + L   LR L   +  +   P +     L+K L    +K+E L   + +L  L N+
Sbjct: 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVK-LQMQGSKLEKLWDGVHSLTGLRNI 639

Query: 129 S--GNCNLIKELPLSFSKLHNLKHLSLSQ-NQLNKFPTVLFNLQHLDVLDLSF-NRIESI 184
              G+ NL KE+P   S   NL+ L LS  + L + P+ +  L  L+ LD+S    +E +
Sbjct: 640 DLRGSKNL-KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697

Query: 185 PDGIGKMKVIEMNLNKNQICHISPDIS 211
           P GI    +  +NL+        PDIS
Sbjct: 698 PTGINLKSLYRLNLSGCSRLKSFPDIS 724

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 48/198 (24%)

Query: 64  GFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIG--- 120
             K FPD    +   +  LD+ +  I +FP +L   + L  L   + K E L + +    
Sbjct: 716 RLKSFPD----ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT 770

Query: 121 --------TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQ-NQLNKFPTVLFNLQHL 171
                   +L +L  +S   +L+ ELP S   LH L+HL +     L   PT + NL+ L
Sbjct: 771 PLMTMLSPSLTRL-FLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL 827

Query: 172 DVLDLS-FNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230
           + LDLS  +R+ + PD                   IS +IS+      L L      I  
Sbjct: 828 ESLDLSGCSRLRTFPD-------------------ISTNISD------LNLSRT--GIEE 860

Query: 231 IPTCILTSSNVCTLNVEG 248
           +P  I   SN+  L++ G
Sbjct: 861 VPWWIEKFSNLSFLDMNG 878

syringae 6; Provisional. Length = 1153

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 38.2 bits (88), Expect = 0.004
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 30/175 (17%)

Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
           L+ L+   N++ SLP     L KL   +     +  LP        L+ LS+S NQL   
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLP------SGLQELSVSDNQLASL 357

Query: 162 PTV---LFNL--------------QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQIC 204
           PT+   L+ L                L  L +S NR+ S+P    ++K  E+ ++ N++ 
Sbjct: 358 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK--ELMVSGNRLT 415

Query: 205 HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQL 259
            +    S  + L + R +     +  +P  ++  S+  T+N+EGN    +  Q L
Sbjct: 416 SLPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG0444|consensus	1255		99.89
KOG4194|consensus	873		99.88
KOG4194|consensus	873		99.87
KOG0444|consensus	1255		99.87
KOG0472|consensus	565		99.86
KOG0472|consensus	565		99.83
KOG0617|consensus	264		99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
KOG0617|consensus	264		99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
KOG0618|consensus	1081		99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
KOG0532|consensus	722		99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG4237|consensus	498		99.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.61
KOG0618|consensus	1081		99.6
KOG0532|consensus	722		99.58
KOG4237|consensus	498		99.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.45
KOG1259|consensus	490		99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
KOG1909|consensus	382		99.26
KOG3207|consensus	505		99.23
KOG1259|consensus	490		99.23
KOG1909|consensus	382		99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG3207|consensus	505		99.12
KOG4658|consensus	889		99.08
KOG0531|consensus	414		98.92
KOG1859|consensus	1096		98.91
KOG2982|consensus	418		98.82
KOG0531|consensus	414		98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG4658|consensus	889		98.68
PLN03150	623	hypothetical protein; Provisional	98.67
KOG1859|consensus	1096		98.66
PLN03150	623	hypothetical protein; Provisional	98.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.58
KOG4579|consensus	177		98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.5
KOG1644|consensus	233		98.45
KOG4579|consensus	177		98.41
PRK15386	426	type III secretion protein GogB; Provisional	98.39
KOG2120|consensus	419		98.29
KOG1644|consensus	233		98.26
KOG2982|consensus	418		98.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG2120|consensus	419		98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG3665|consensus	699		98.08
PRK15386	426	type III secretion protein GogB; Provisional	98.03
KOG3665|consensus	699		97.83
KOG2123|consensus	388		97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.06
KOG2123|consensus	388		96.93
KOG2739|consensus	260		96.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.53
KOG2739|consensus	260		96.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
KOG4308|consensus	478		95.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.3
KOG4308|consensus	478		95.0
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.76
KOG0473|consensus	326		94.32
smart00370	26	LRR Leucine-rich repeats, outliers.	94.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.03
KOG0473|consensus	326		93.35
KOG4341|consensus	483		92.91
smart00370	26	LRR Leucine-rich repeats, outliers.	91.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.68
KOG3864|consensus	221		85.82
KOG3864|consensus	221		80.38

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=8.5e-24  Score=205.98  Aligned_cols=205  Identities=26%  Similarity=0.412  Sum_probs=110.6

Q ss_pred             HhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCCCCC-cCCccccccCCCcEEeccCCcCc-ccCccccCcc
Q psy3567          47 RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLE  123 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~  123 (277)
                      ..++.+++|++|++++|.+. .+|..+..+ ++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.++
T Consensus       158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             hHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            34455555555555555544 444444444 55555555555544 33444555555555555555554 3444555555


Q ss_pred             cCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc-cCccccCCCCCCCEEEccCCCCc-ccCchhccce-eeEEEcc
Q psy3567         124 KLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLN  199 (277)
Q Consensus       124 ~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~  199 (277)
                      +|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..++ ++.|+++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            5555555555544 34445555555555555555554 34445555555556666555554 3444444442 5556666


Q ss_pred             CCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         200 KNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       200 ~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++|.+++
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcEEECCCCeeEe
Confidence            66555 34444555666666666666665 4555556666666666666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=5.1e-24  Score=207.56  Aligned_cols=237  Identities=26%  Similarity=0.411  Sum_probs=149.7

Q ss_pred             CCceeEecCCCCcCCCCCCce-------eeeccCCcchhHh--hhccCccCEEEeecCCCC-cCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTI-------FVLKMGNSATKRH--FETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~-------~~l~~~~~~~~~~--l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l   84 (277)
                      +.++.|++++|.+.|.+|.++       .++.+.++.+...  .+.+++|++|++++|.+. .+|..+..+ ++|++|++
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L  171 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDL  171 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEEC
Confidence            445555555555555444322       2333333333211  123555666666666655 445555444 66677777


Q ss_pred             cCCCCC-cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc-c
Q psy3567          85 SQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN-K  160 (277)
Q Consensus        85 ~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~-~  160 (277)
                      ++|.+. .+|..+.++++|++|++++|.+. .+|..++.+.+|++|++++|.+. .+|..++.+++|++|++++|.+. .
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            666654 45556666677777777766665 34666666777777777766665 45666777777777777777665 4


Q ss_pred             CccccCCCCCCCEEEccCCCCc-ccCchhccc-eeeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccC
Q psy3567         161 FPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKM-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILT  237 (277)
Q Consensus       161 ~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~~-~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  237 (277)
                      +|..++.+++|++|++++|.++ .+|..+..+ ++++|++++|.++ .+|..+..+++|+.|++++|.++ +.+|..+..
T Consensus       252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~  330 (968)
T PLN00113        252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT-GKIPVALTS  330 (968)
T ss_pred             cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC-CcCChhHhc
Confidence            5666667777777777777666 456666555 3777777777776 55666777777777777777776 566777777


Q ss_pred             CCCccEEEcCCCeeee
Q psy3567         238 SSNVCTLNVEGNLFEM  253 (277)
Q Consensus       238 ~~~L~~l~l~~n~~~~  253 (277)
                      +++|+.|++++|.+++
T Consensus       331 l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        331 LPRLQVLQLWSNKFSG  346 (968)
T ss_pred             CCCCCEEECcCCCCcC
Confidence            7777888887777764

>KOG0444|consensus

Probab=99.89  E-value=3.6e-25  Score=194.18  Aligned_cols=246  Identities=23%  Similarity=0.384  Sum_probs=178.9

Q ss_pred             hhhhcCCCCCCCCceeEecCCCCcCCC-CCCceee------eccCCcch---hHhhhccCccCEEEeecCCCCcCChhHH
Q psy3567           4 LTEDFGWDPSSPSKLTLLLPGKKNRGL-IEGTIFV------LKMGNSAT---KRHFETAKKTGVINLSHQGFKEFPDEMN   73 (277)
Q Consensus         4 l~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~------l~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~   73 (277)
                      |+...|-..+-|+++++.++.|++... +|.+++.      +.++.+.+   +..+...+++-+|+|++|+|..+|..++
T Consensus        67 L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf  146 (1255)
T KOG0444|consen   67 LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF  146 (1255)
T ss_pred             hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHH
Confidence            455556666678888888888888544 4555543      33444333   4677777888888888888888887777


Q ss_pred             HhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCc--------------------------ccCccccCcccCce
Q psy3567          74 ELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIE--------------------------SLPKDIGTLEKLEN  127 (277)
Q Consensus        74 ~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~--------------------------~~~~~~~~l~~L~~  127 (277)
                      ..+..|-+|++++|++..+|+.+..+..|+.|++++|.+.                          .+|.++..+.+|..
T Consensus       147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d  226 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD  226 (1255)
T ss_pred             HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence            6667777888888888888877777777777777777652                          24555667778888


Q ss_pred             eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccC--
Q psy3567         128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQIC--  204 (277)
Q Consensus       128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~--  204 (277)
                      +|+++|.+..+|..+.++.+|+.|++++|.++.+....+.+.+|++|++++|+++.+|..+..++ ++.|++.+|+++  
T Consensus       227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  227 VDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             ccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence            88888888888888888889999999988888776666777888888888888888887776663 777777777765  


Q ss_pred             cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCee
Q psy3567         205 HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF  251 (277)
Q Consensus       205 ~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~  251 (277)
                      .||..++.+.+|.++..++|.+.  -+|..++.|..|++|.|+.|.+
T Consensus       307 GiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  307 GIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             CCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccce
Confidence            66666666666666666666664  5566666666666666666644

>KOG4194|consensus

Probab=99.88  E-value=1.3e-23  Score=182.86  Aligned_cols=212  Identities=25%  Similarity=0.307  Sum_probs=146.4

Q ss_pred             CCceeEecCCCCcCCCC----C--CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLI----E--GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~----~--~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +.++++||+.|.++-.-    |  ..+.++.+.++++.    ..|..+.+|.+|.|++|+++.+|...|+-+++|+.|++
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence            45666777777664332    2  22355666665553    67888888999999999999999888885589999999


Q ss_pred             cCCCCCcCCc-cccccCCCcEEeccCCcCcccC-ccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccC
Q psy3567          85 SQNKISKFPL-DLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKF  161 (277)
Q Consensus        85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~  161 (277)
                      ..|+|..+.. .|.++++|+.|.+..|.|..+. ..|..+.+++++++..|.+..+.. ++.++.+|+.|++++|.+.++
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            9998876633 5788888888888888888763 467788888888888888877654 467778888888888887766


Q ss_pred             -ccccCCCCCCCEEEccCCCCcccCchhcc-c-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCcc
Q psy3567         162 -PTVLFNLQHLDVLDLSFNRIESIPDGIGK-M-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCL  226 (277)
Q Consensus       162 -~~~l~~~~~L~~L~l~~n~l~~l~~~~~~-~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~  226 (277)
                       +..+...++|++|+++.|.++.+++.... + .+++|.++.|+++.+.+. |..+++|..|||+.|.+
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence             45566677888888888888777655322 2 255555555555544432 33444444444444443

>KOG4194|consensus

Probab=99.87  E-value=1.4e-23  Score=182.71  Aligned_cols=200  Identities=25%  Similarity=0.343  Sum_probs=128.3

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCccc-CccccCcccCceeec
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSG  130 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l  130 (277)
                      .++++|+|++|+|+.+-.+-|..+.+|.+|.++.|+++++|.. |+++++|+.|++..|+|.-+ .-.|..+++|+.+.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            3444444444444433333333224444444444444444442 44455555555555555433 334555555555555


Q ss_pred             ccccccccch-hhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCccc--CchhccceeeEEEccCCccCcC
Q psy3567         131 NCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESI--PDGIGKMKVIEMNLNKNQICHI  206 (277)
Q Consensus       131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l--~~~~~~~~l~~L~l~~n~l~~l  206 (277)
                      ..|.+..+.+ .|..+.++++|++..|++..+. .+++.+++|++|+++.|.|..+  ..|-+..++.+|++++|+|+++
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            5555555543 3666777778888888777663 4566788888888888888854  3344445689999999999988


Q ss_pred             CcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         207 SPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       207 ~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++. +..+..|+.|+|++|.++ ..-...|..+++|++|||+.|.++.
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSW  379 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEE
Confidence            875 888888999999999887 3444567788899999999997763

>KOG0444|consensus

Probab=99.87  E-value=8.1e-24  Score=185.78  Aligned_cols=207  Identities=24%  Similarity=0.365  Sum_probs=107.9

Q ss_pred             cchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCccccC
Q psy3567          43 SATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGT  121 (277)
Q Consensus        43 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~  121 (277)
                      ..++..+-.+..|++|||++|++.++|..+-.. .+.-+|++++|+|.++|.. |.++..|-+||+++|++..+|+.+..
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            333455555555566666666666666555444 5555566666666666654 55666666666666666666666666


Q ss_pred             cccCceeecccccccccc-hhhhcCCCCCEEEccCCCCc--cCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEE
Q psy3567         122 LEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMN  197 (277)
Q Consensus       122 l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~  197 (277)
                      +..|++|.+++|++.... ..+..+.+|+.|.+++++-+  .+|..+..+.+|..++++.|.+..+|..++... ++.|+
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence            666666666666543110 01111222222222222211  234444444555555555555555555555442 55555


Q ss_pred             ccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         198 LNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       198 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      +++|+|+++....+...+|..|++|.|+++  .+|.+++.++.|+.|++.+|.++
T Consensus       252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  252 LSGNKITELNMTEGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             cCcCceeeeeccHHHHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCccc
Confidence            555555555555555555555555555554  55555555555555555555444

>KOG0472|consensus

Probab=99.86  E-value=2.2e-23  Score=174.27  Aligned_cols=238  Identities=29%  Similarity=0.433  Sum_probs=174.7

Q ss_pred             CCceeEecCCCCcCCCC--C--CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccC
Q psy3567          15 PSKLTLLLPGKKNRGLI--E--GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQ   86 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~--~--~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~   86 (277)
                      .++.-|++..|.++-..  |  ..+..++.+.+.+.    +...+++.+.+||+.+|+++++|+++..+ .+|..||+++
T Consensus       206 ~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLDlSN  284 (565)
T KOG0472|consen  206 ESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLDLSN  284 (565)
T ss_pred             hhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhhhhhcccC
Confidence            34555666666654321  1  12234455555553    45558888899999999999999888877 8889999999


Q ss_pred             CCCCcCCccccccCCCcEEeccCCcCcccCcc---------------------------------------c---cCccc
Q psy3567          87 NKISKFPLDLASYQLLKSLTFDQNKIESLPKD---------------------------------------I---GTLEK  124 (277)
Q Consensus        87 ~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~---------------------------------------~---~~l~~  124 (277)
                      |.|+.+|.+++++ +|+.|-+.+|.+..+-..                                       +   ....+
T Consensus       285 N~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  285 NDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             CccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence            9999888888888 888888887766311000                                       0   00011


Q ss_pred             --------------------------Cceeeccccc------------------------ccccchhhhcCCCCCEEEcc
Q psy3567         125 --------------------------LENVSGNCNL------------------------IKELPLSFSKLHNLKHLSLS  154 (277)
Q Consensus       125 --------------------------L~~L~l~~n~------------------------~~~l~~~~~~l~~L~~L~l~  154 (277)
                                                ...++++.|.                        +.-+|..++.+++|..|+++
T Consensus       364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~  443 (565)
T KOG0472|consen  364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS  443 (565)
T ss_pred             hhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence                                      1112333333                        33344556777888888998


Q ss_pred             CCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccC
Q psy3567         155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIP  232 (277)
Q Consensus       155 ~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~  232 (277)
                      +|-+.++|..++.+..|++++++.|++..+|...+... ++.+-.++|++..++++ +..+.+|+.||+.+|-+.  .+|
T Consensus       444 NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq--~IP  521 (565)
T KOG0472|consen  444 NNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ--QIP  521 (565)
T ss_pred             cchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh--hCC
Confidence            88888898888888889999999998888998887765 55566667899999888 899999999999999997  899


Q ss_pred             ccccCCCCccEEEcCCCeeeeccc
Q psy3567         233 TCILTSSNVCTLNVEGNLFEMKAF  256 (277)
Q Consensus       233 ~~~~~~~~L~~l~l~~n~~~~~~~  256 (277)
                      ..+.+|.++++|.++||+|..+..
T Consensus       522 p~LgnmtnL~hLeL~gNpfr~Pr~  545 (565)
T KOG0472|consen  522 PILGNMTNLRHLELDGNPFRQPRH  545 (565)
T ss_pred             hhhccccceeEEEecCCccCCCHH
Confidence            999999999999999999985443

>KOG0472|consensus

Probab=99.83  E-value=3.7e-23  Score=172.97  Aligned_cols=201  Identities=25%  Similarity=0.414  Sum_probs=144.5

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE  126 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~  126 (277)
                      +.+.++..++.++++.|.+.++|++++++ ..+..++..+|+++.+|+.+..+.++..+++.+|.+...|+..-.++.|+
T Consensus       108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~-~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~  186 (565)
T KOG0472|consen  108 EQIGSLISLVKLDCSSNELKELPDSIGRL-LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLK  186 (565)
T ss_pred             HHHhhhhhhhhhhccccceeecCchHHHH-hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHH
Confidence            55566666666666666666666666666 56666666666666666666666666667777776666666555577777


Q ss_pred             eeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhcc-c-eeeEEEccCCccC
Q psy3567         127 NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK-M-KVIEMNLNKNQIC  204 (277)
Q Consensus       127 ~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~-~-~l~~L~l~~n~l~  204 (277)
                      +++...|.+..+|+.++.+.+|.-|++..|++..+| .+..+..|.+++++.|.+..+|..... + .+..+|+.+|+++
T Consensus       187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence            777777777777777777777777777777777776 566667777777777777777776653 3 3777888888888


Q ss_pred             cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         205 HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       205 ~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      ++|..+.-+++|..||+|+|.++  .+|..++++ +|+.|.+.||++.
T Consensus       266 e~Pde~clLrsL~rLDlSNN~is--~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNNDIS--SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cCchHHHHhhhhhhhcccCCccc--cCCcccccc-eeeehhhcCCchH
Confidence            88888777788888888888776  778888887 7888888888765

>KOG0617|consensus

Probab=99.83  E-value=6.8e-23  Score=153.33  Aligned_cols=180  Identities=26%  Similarity=0.449  Sum_probs=157.4

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE  126 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~  126 (277)
                      ..+-.+..++.|.+++|+++.+|+.++.+ .+|+.|++.+|+++.+|.+++.+++|+.|++..|++..+|.+|+.++.|+
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHh-hhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            34556677888999999999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccc--ccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCcc
Q psy3567         127 NVSGNCNLIK--ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQI  203 (277)
Q Consensus       127 ~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l  203 (277)
                      .||++.|.+.  .+|..|..+..|+.|++++|.+..+|+.++++++|+.|.+..|.+-++|..++.+. +++|.+++|++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            9999999887  57888999999999999999999999999999999999999999999999998885 89999999999


Q ss_pred             CcCCcCccCCCC---CCEEEcCCCccc
Q psy3567         204 CHISPDISECVR---LKILRLEENCLA  227 (277)
Q Consensus       204 ~~l~~~l~~~~~---L~~L~l~~n~~~  227 (277)
                      +.+|+.++.+.-   =..+.+..|++.
T Consensus       186 ~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  186 TVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             eecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            999988765431   234444555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=8.9e-20  Score=169.27  Aligned_cols=183  Identities=24%  Similarity=0.263  Sum_probs=120.7

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccc
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN  133 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n  133 (277)
                      .|+.|++++|+++.+|..    +++|+.|++++|++..+|...   ..|+.|++++|.+..+|..   ..+|++|++++|
T Consensus       283 ~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N  352 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDN  352 (788)
T ss_pred             hcCEEECcCCcccccccc----ccccceeECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCC
Confidence            444455555555544431    144555555555555444321   2344455555555544421   135777777777


Q ss_pred             cccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCC
Q psy3567         134 LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISEC  213 (277)
Q Consensus       134 ~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~  213 (277)
                      .+..+|..   ..+|+.|++++|.+..+|..   ..+|+.|++++|.++.+|...  ..++.|++++|+++.+|...   
T Consensus       353 ~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~--s~L~~LdLS~N~LssIP~l~---  421 (788)
T PRK15387        353 QLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLP--SELKELMVSGNRLTSLPMLP---  421 (788)
T ss_pred             ccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCcc--cCCCEEEccCCcCCCCCcch---
Confidence            77766642   23566667777777766643   246888888888888777542  24788999999999888643   


Q ss_pred             CCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccccc
Q psy3567         214 VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQL  259 (277)
Q Consensus       214 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l  259 (277)
                      .+|+.|++++|.++  .+|..+.++++++.+++++|++++..+..+
T Consensus       422 ~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        422 SGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhhccCccc--ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            46888999999997  789999999999999999999998765544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.1e-19  Score=169.21  Aligned_cols=192  Identities=25%  Similarity=0.443  Sum_probs=115.1

Q ss_pred             cCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccccc
Q psy3567          55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNL  134 (277)
Q Consensus        55 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~  134 (277)
                      |+.|++++|++..+|..+.   .+|+.|++++|++..+|..+.  .+|+.|++++|++..+|..+.  .+|++|++++|.
T Consensus       243 L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~  315 (754)
T PRK15370        243 IQEMELSINRITELPERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS  315 (754)
T ss_pred             ccEEECcCCccCcCChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc
Confidence            4444444444444443221   234444444444444443322  244455555554444443321  234455555555


Q ss_pred             ccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCC
Q psy3567         135 IKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECV  214 (277)
Q Consensus       135 ~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~  214 (277)
                      +..+|..+  .++|+.|++++|.++.+|..+.  ++|+.|++++|.++.+|..+. ..+++|++++|+++.+|..+.  .
T Consensus       316 Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp-~~L~~LdLs~N~Lt~LP~~l~--~  388 (754)
T PRK15370        316 LTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP-PTITTLDVSRNALTNLPENLP--A  388 (754)
T ss_pred             cccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc-CCcCEEECCCCcCCCCCHhHH--H
Confidence            54444322  2467777777777777765543  578888888888887776553 357888888888888887654  3


Q ss_pred             CCCEEEcCCCccccCccCcccc----CCCCccEEEcCCCeeeeccccccccc
Q psy3567         215 RLKILRLEENCLAINAIPTCIL----TSSNVCTLNVEGNLFEMKAFQQLDGY  262 (277)
Q Consensus       215 ~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~l~l~~n~~~~~~~~~l~~~  262 (277)
                      .|+.|++++|.+.  .+|..+.    ..+.+..+++.+|+++...++.++.+
T Consensus       389 sL~~LdLs~N~L~--~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L  438 (754)
T PRK15370        389 ALQIMQASRNNLV--RLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL  438 (754)
T ss_pred             HHHHHhhccCCcc--cCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence            6888888888886  5565443    34788999999999987666655433

>KOG0617|consensus

Probab=99.80  E-value=1.9e-22  Score=150.89  Aligned_cols=185  Identities=28%  Similarity=0.463  Sum_probs=163.6

Q ss_pred             cCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCC
Q psy3567          67 EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLH  146 (277)
Q Consensus        67 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~  146 (277)
                      ++| +++.+ .+++.|.+++|.++.+|+.++.+.+|+.|++.+|+|+.+|.++..+++|++|+++-|++..+|.+|+.++
T Consensus        25 ~~~-gLf~~-s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   25 ELP-GLFNM-SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             hcc-cccch-hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence            454 35666 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEccCCCCc--cCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcCccCCCCCCEEEcCC
Q psy3567         147 NLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRLEE  223 (277)
Q Consensus       147 ~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~  223 (277)
                      .|+.||+++|++.  .+|..++.+..|+.|++++|.+.-+|..++.++ ++.|.+.+|.+-++|..++.+..|+.|.+.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence            9999999999998  678888889999999999999999999999885 9999999999999999999999999999999


Q ss_pred             CccccCccCccccCCC---CccEEEcCCCeeeecc
Q psy3567         224 NCLAINAIPTCILTSS---NVCTLNVEGNLFEMKA  255 (277)
Q Consensus       224 n~~~~~~~~~~~~~~~---~L~~l~l~~n~~~~~~  255 (277)
                      |.++  .+|..+.++.   +-+.+.+..|+|-...
T Consensus       183 nrl~--vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  183 NRLT--VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             ceee--ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            9998  7788777652   3344555666665443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=3e-18  Score=159.74  Aligned_cols=217  Identities=23%  Similarity=0.362  Sum_probs=147.6

Q ss_pred             CceeEecCCCCcCCC---CCCceeeeccCCcchh---HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCC
Q psy3567          16 SKLTLLLPGKKNRGL---IEGTIFVLKMGNSATK---RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKI   89 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i   89 (277)
                      +...|++++++++..   +|+.+..+.+.++.+.   ..+  .++|++|++++|+++.+|..+.   ++|+.|++++|++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L  253 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRI  253 (754)
T ss_pred             CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccccCChhhh---ccccEEECcCCcc
Confidence            345677777666532   2344555555554443   222  2467778888887777776443   4677788888877


Q ss_pred             CcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCC
Q psy3567          90 SKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQ  169 (277)
Q Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~  169 (277)
                      ..+|..+.  .+|+.|++++|++..+|..+.  .+|++|++++|.+..+|..+.  ++|+.|++++|.+..+|..+.  +
T Consensus       254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~  325 (754)
T PRK15370        254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--P  325 (754)
T ss_pred             CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--c
Confidence            77776553  467788888887777766553  467888888887777765432  367777788887777765443  5


Q ss_pred             CCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       170 ~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      +|+.|++++|.++.+|..+. ..++.|++++|+++.+|..+.  ++|+.|++++|.++  .+|..+.  ..|+.|++++|
T Consensus       326 sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        326 GLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT--NLPENLP--AALQIMQASRN  398 (754)
T ss_pred             cceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC--CCCHhHH--HHHHHHhhccC
Confidence            78888888888887776553 357888888888887776553  57888888888876  6666554  36888888888


Q ss_pred             eee
Q psy3567         250 LFE  252 (277)
Q Consensus       250 ~~~  252 (277)
                      .++
T Consensus       399 ~L~  401 (754)
T PRK15370        399 NLV  401 (754)
T ss_pred             Ccc
Confidence            776

>KOG0618|consensus

Probab=99.77  E-value=2.7e-20  Score=169.62  Aligned_cols=237  Identities=23%  Similarity=0.349  Sum_probs=190.5

Q ss_pred             CCCCceeEecCCCCcCCC----CCCceeeeccCCcch---hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEcc
Q psy3567          13 SSPSKLTLLLPGKKNRGL----IEGTIFVLKMGNSAT---KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDIS   85 (277)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~----~~~~~~~l~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~   85 (277)
                      ..++++.|+...|.+...    .|..+..+.++.+.+   +..++.|.+++.+...+|+++.+|..++.. .+|+.|.+.
T Consensus       217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~-~~L~~l~~~  295 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI-TSLVSLSAA  295 (1081)
T ss_pred             cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh-hhHHHHHhh
Confidence            345666677777766522    234445555555433   488899999999999999999999999999 999999999


Q ss_pred             CCCCCcCCccccccCCCcEEeccCCcCcccCcccc--------------------------CcccCceeecccccccc-c
Q psy3567          86 QNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIG--------------------------TLEKLENVSGNCNLIKE-L  138 (277)
Q Consensus        86 ~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--------------------------~l~~L~~L~l~~n~~~~-l  138 (277)
                      +|.++.+|+...++..|+.|++..|.+..+|..+-                          .++.|+.|.+.+|.+.+ .
T Consensus       296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            99999999999999999999999999986665321                          23445666667777663 2


Q ss_pred             chhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcCccCCCCC
Q psy3567         139 PLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDISECVRL  216 (277)
Q Consensus       139 ~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L  216 (277)
                      -+.+..+++|+.|++++|++.++|. .+.++..|++|++++|+++.+|.++..+. +++|....|++..+| .+.+++.|
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQL  454 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcc
Confidence            3357788999999999999999986 45689999999999999999999988876 899999999999999 78899999


Q ss_pred             CEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         217 KILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      +.+|++.|.++...+|..... ++|++||++||...
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL  489 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence            999999999985555554443 79999999999643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=7e-18  Score=156.76  Aligned_cols=202  Identities=21%  Similarity=0.251  Sum_probs=157.7

Q ss_pred             CCceeEecCCCCcCCC--CCCceeeeccCCcchh--------------------HhhhccCccCEEEeecCCCCcCChhH
Q psy3567          15 PSKLTLLLPGKKNRGL--IEGTIFVLKMGNSATK--------------------RHFETAKKTGVINLSHQGFKEFPDEM   72 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~--~~~~~~~l~~~~~~~~--------------------~~l~~~~~L~~L~l~~~~i~~~~~~~   72 (277)
                      +++++|++++|.++..  .|+.+..+.+..+.+.                    ..-...+.|+.|++++|+++.+|.. 
T Consensus       242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l-  320 (788)
T PRK15387        242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-  320 (788)
T ss_pred             CCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCC-
Confidence            6788888888877643  2344444444443322                    1112236899999999999998862 


Q ss_pred             HHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEE
Q psy3567          73 NELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLS  152 (277)
Q Consensus        73 ~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~  152 (277)
                         +..|+.|++++|+++.+|..   ..+|++|++++|++..+|..   ..+|+.|++++|.+..+|..   ..+|+.|+
T Consensus       321 ---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~Ld  388 (788)
T PRK15387        321 ---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELI  388 (788)
T ss_pred             ---cccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEE
Confidence               25788999999999988852   25799999999999988753   35688899999999988754   35799999


Q ss_pred             ccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccC
Q psy3567         153 LSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP  232 (277)
Q Consensus       153 l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~  232 (277)
                      +++|.+..+|...   ++|+.|++++|.++.+|....  .++.|++++|+++.+|..+..+++|+.|++++|+++ +..+
T Consensus       389 Ls~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~~--~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls-~~~~  462 (788)
T PRK15387        389 VSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLPS--GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS-ERTL  462 (788)
T ss_pred             ecCCcccCCCCcc---cCCCEEEccCCcCCCCCcchh--hhhhhhhccCcccccChHHhhccCCCeEECCCCCCC-chHH
Confidence            9999999887543   679999999999998886432  478899999999999999999999999999999998 5555


Q ss_pred             ccc
Q psy3567         233 TCI  235 (277)
Q Consensus       233 ~~~  235 (277)
                      ..+
T Consensus       463 ~~L  465 (788)
T PRK15387        463 QAL  465 (788)
T ss_pred             HHH
Confidence            554

>PLN03210 Resistant to P

Probab=99.68  E-value=1.2e-15  Score=150.42  Aligned_cols=130  Identities=24%  Similarity=0.373  Sum_probs=65.4

Q ss_pred             HhhhccCccCEEEeecCCC------C-cCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccc
Q psy3567          47 RHFETAKKTGVINLSHQGF------K-EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI  119 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i------~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~  119 (277)
                      .+|..+++|+.|.+..+..      . .+|+++..++.+|+.|.+.++++..+|..+ ...+|++|++.++.+..+|..+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence            4566677777776655422      1 455555555455666666666665555554 3455555555555555555555


Q ss_pred             cCcccCceeeccccc-ccccchhhhcCCCCCEEEccCCC-CccCccccCCCCCCCEEEccC
Q psy3567         120 GTLEKLENVSGNCNL-IKELPLSFSKLHNLKHLSLSQNQ-LNKFPTVLFNLQHLDVLDLSF  178 (277)
Q Consensus       120 ~~l~~L~~L~l~~n~-~~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~~L~l~~  178 (277)
                      ..+++|++++++++. +..+| .++.+++|++|++++|. +..+|..+..+++|+.|++++
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            555555555554432 22333 23344444444444432 223344444444444444443

syringae 6; Provisional

>KOG0532|consensus

Probab=99.65  E-value=5.2e-18  Score=147.80  Aligned_cols=176  Identities=26%  Similarity=0.424  Sum_probs=163.8

Q ss_pred             hccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceee
Q psy3567          50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS  129 (277)
Q Consensus        50 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  129 (277)
                      ..+......|++.|++.++|..+..+ ..|..+.+..|.+..+|..++++..|++++++.|++..+|..++.++ |+.+.
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f-~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAF-VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHH-HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence            34555678999999999999887776 78999999999999999999999999999999999999998887776 99999


Q ss_pred             cccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcC
Q psy3567         130 GNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD  209 (277)
Q Consensus       130 l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~  209 (277)
                      +++|++..+|..++...+|..||.+.|.+..+|..++.+.+|+.|.+.+|++..+|.....++|..||+++|+++.||.+
T Consensus       150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~  229 (722)
T KOG0532|consen  150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVD  229 (722)
T ss_pred             EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchh
Confidence            99999999999999889999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             ccCCCCCCEEEcCCCccc
Q psy3567         210 ISECVRLKILRLEENCLA  227 (277)
Q Consensus       210 l~~~~~L~~L~l~~n~~~  227 (277)
                      |.+|+.|++|-|.+|+++
T Consensus       230 fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhheeeeeccCCCC
Confidence            999999999999999997

>PLN03210 Resistant to P

Probab=99.64  E-value=9.1e-15  Score=144.30  Aligned_cols=229  Identities=23%  Similarity=0.315  Sum_probs=136.2

Q ss_pred             CCceeEecCCCCcCCCCC-----CceeeeccCCcc---hhHhhhccCccCEEEeecCC-CCcCChhHHHhhccccEEEcc
Q psy3567          15 PSKLTLLLPGKKNRGLIE-----GTIFVLKMGNSA---TKRHFETAKKTGVINLSHQG-FKEFPDEMNELKAVLRTLDIS   85 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~-----~~~~~l~~~~~~---~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~   85 (277)
                      .++.+|+++++.+...+.     ..+..+.+..+.   ..+.++.+++|++|++++|. +..+|..+..+ ++|+.|+++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc-CCCCEEeCC
Confidence            466777777776643321     233444444321   11346667777777777763 55777666655 677777777


Q ss_pred             CC-CCCcCCccccccCCCcEEeccCC---------------------cCcccCccc------------------------
Q psy3567          86 QN-KISKFPLDLASYQLLKSLTFDQN---------------------KIESLPKDI------------------------  119 (277)
Q Consensus        86 ~~-~i~~~~~~~~~l~~L~~L~l~~~---------------------~i~~~~~~~------------------------  119 (277)
                      +| .+..+|..+ ++++|++|++++|                     .+..+|..+                        
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            75 345555543 4555555555544                     333333221                        


Q ss_pred             ------cCcccCceeeccccc-ccccchhhhcCCCCCEEEccCC-CCccCccccCCCCCCCEEEccCC-CCcccCchhcc
Q psy3567         120 ------GTLEKLENVSGNCNL-IKELPLSFSKLHNLKHLSLSQN-QLNKFPTVLFNLQHLDVLDLSFN-RIESIPDGIGK  190 (277)
Q Consensus       120 ------~~l~~L~~L~l~~n~-~~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~l~~~~~L~~L~l~~n-~l~~l~~~~~~  190 (277)
                            ...++|+.|++++|. +..+|..++.+++|+.|++++| .+..+|... .+++|+.|++++| .+..+|...  
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~--  845 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--  845 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc--
Confidence                  011244455554443 2345656666666666666654 344555443 4566666666665 333444321  


Q ss_pred             ceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       191 ~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      ..+++|++++|.++.+|.++..+++|+.|++++|.-. ..+|..+..+++|+.++++++
T Consensus       846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L-~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL-QRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc-CccCcccccccCCCeeecCCC
Confidence            1467788888888888888888888888888885433 367777777888888888876

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=3.8e-16  Score=133.78  Aligned_cols=235  Identities=21%  Similarity=0.256  Sum_probs=151.2

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCC-------hhHHHhhccccEEEccC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFP-------DEMNELKAVLRTLDISQ   86 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-------~~~~~~~~~L~~L~l~~   86 (277)
                      ...+++++++++.++..-..          .+...+...+.+++++++++.+...+       ..+.. .++|+.|++++
T Consensus        22 l~~L~~l~l~~~~l~~~~~~----------~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~   90 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAK----------ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSD   90 (319)
T ss_pred             HhhccEEeecCCCCcHHHHH----------HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccC
Confidence            34466777777766532111          12345666777888888888766322       22333 36888888888


Q ss_pred             CCCCc-CCccccccCC---CcEEeccCCcCcc-----cCccccCc-ccCceeeccccccc-----ccchhhhcCCCCCEE
Q psy3567          87 NKISK-FPLDLASYQL---LKSLTFDQNKIES-----LPKDIGTL-EKLENVSGNCNLIK-----ELPLSFSKLHNLKHL  151 (277)
Q Consensus        87 ~~i~~-~~~~~~~l~~---L~~L~l~~~~i~~-----~~~~~~~l-~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L  151 (277)
                      |.+.. .+..+..+..   |++|++++|++..     +...+..+ ++|+.+++++|.+.     .++..+..+.+|++|
T Consensus        91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L  170 (319)
T cd00116          91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL  170 (319)
T ss_pred             CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence            88763 3334444444   8888888888762     23345566 78888888888876     234456677788888


Q ss_pred             EccCCCCc-----cCccccCCCCCCCEEEccCCCCcc-----cCchhccc-eeeEEEccCCccCcC-----CcCc-cCCC
Q psy3567         152 SLSQNQLN-----KFPTVLFNLQHLDVLDLSFNRIES-----IPDGIGKM-KVIEMNLNKNQICHI-----SPDI-SECV  214 (277)
Q Consensus       152 ~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~~-~l~~L~l~~n~l~~l-----~~~l-~~~~  214 (277)
                      ++++|.+.     .++..+...++|++|++++|.++.     ++..+... ++++|++++|.++..     ...+ ...+
T Consensus       171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~  250 (319)
T cd00116         171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI  250 (319)
T ss_pred             ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence            88888877     233445556788888888888762     22233333 488888888887731     1111 1236


Q ss_pred             CCCEEEcCCCcccc---CccCccccCCCCccEEEcCCCeeeecccccc
Q psy3567         215 RLKILRLEENCLAI---NAIPTCILTSSNVCTLNVEGNLFEMKAFQQL  259 (277)
Q Consensus       215 ~L~~L~l~~n~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l  259 (277)
                      .|++|++++|.++.   ..+...+..+++|+++++++|.++.+..+.+
T Consensus       251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~  298 (319)
T cd00116         251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL  298 (319)
T ss_pred             CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence            88899998888852   2333455566788899999998886644433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237|consensus

Probab=99.62  E-value=3.5e-17  Score=137.06  Aligned_cols=222  Identities=24%  Similarity=0.331  Sum_probs=143.4

Q ss_pred             CCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccC-CCCCcCCcc-ccccCCCcEE
Q psy3567          32 EGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQ-NKISKFPLD-LASYQLLKSL  105 (277)
Q Consensus        32 ~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~-~~~l~~L~~L  105 (277)
                      |+++..+.+..+.+.    ++|+.+++|+.|||++|.|+.+.+..|+....+..|.+.+ |+|+.+|.. |.++..++.|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            444444444444332    6677777777777777777777666666556665554444 677766653 5556555555


Q ss_pred             eccCCcCccc-CccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCC-------------------------
Q psy3567         106 TFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQL-------------------------  158 (277)
Q Consensus       106 ~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l-------------------------  158 (277)
                      .+.-|.+.-+ ...++.++++..|.+..|.+..++. .|..+..++++.++.|.+                         
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            5555555433 2245555555555555555554443 344444444444433321                         


Q ss_pred             ------------------------------------ccC-c-cccCCCCCCCEEEccCCCCcccCchhcc-c-eeeEEEc
Q psy3567         159 ------------------------------------NKF-P-TVLFNLQHLDVLDLSFNRIESIPDGIGK-M-KVIEMNL  198 (277)
Q Consensus       159 ------------------------------------~~~-~-~~l~~~~~L~~L~l~~n~l~~l~~~~~~-~-~l~~L~l  198 (277)
                                                          ..+ | ..+..+++|+++++++|+++.+.+..+. . .+++|.+
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                                000 1 1245688999999999999987655443 2 5889999


Q ss_pred             cCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         199 NKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       199 ~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      ..|++..+... |..+..|+.|+|.+|+|+ ...|..|....+|.+|++-+|+|...
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCc
Confidence            99999887764 778889999999999998 56777888888999999999988753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.61  E-value=2.4e-16  Score=135.00  Aligned_cols=206  Identities=19%  Similarity=0.234  Sum_probs=151.9

Q ss_pred             HhhhccCccCEEEeecCCCC-----cCChhHHHhhccccEEEccCCCCCc-------CCccccccCCCcEEeccCCcCcc
Q psy3567          47 RHFETAKKTGVINLSHQGFK-----EFPDEMNELKAVLRTLDISQNKISK-------FPLDLASYQLLKSLTFDQNKIES  114 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~~L~~L~l~~~~i~~-------~~~~~~~l~~L~~L~l~~~~i~~  114 (277)
                      ..+..++.|+.++++++.++     .+++.+... +.+++++++++.+..       ++..+..+++|++|++++|.+..
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            45677788999999999985     344444444 679999999987763       23446778899999999999873


Q ss_pred             -cCccccCcc---cCceeecccccccc-----cchhhhcC-CCCCEEEccCCCCc-----cCccccCCCCCCCEEEccCC
Q psy3567         115 -LPKDIGTLE---KLENVSGNCNLIKE-----LPLSFSKL-HNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDLSFN  179 (277)
Q Consensus       115 -~~~~~~~l~---~L~~L~l~~n~~~~-----l~~~~~~l-~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n  179 (277)
                       .+..+..+.   +|++|++++|.+..     +...+..+ ++|+.+++++|.++     .++..+..+++|++|++++|
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence             333444444   49999999998872     33456677 89999999999988     33445556789999999999


Q ss_pred             CCcc-----cCchhccc-eeeEEEccCCccC-----cCCcCccCCCCCCEEEcCCCccccCccCccccC----CCCccEE
Q psy3567         180 RIES-----IPDGIGKM-KVIEMNLNKNQIC-----HISPDISECVRLKILRLEENCLAINAIPTCILT----SSNVCTL  244 (277)
Q Consensus       180 ~l~~-----l~~~~~~~-~l~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~l  244 (277)
                      .++.     ++..+... .+++|++++|.++     .+...+..+++|++|++++|.++...+......    .+.|++|
T Consensus       176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence            9872     22223322 4899999999987     344557778999999999999873222221122    3789999


Q ss_pred             EcCCCeeee
Q psy3567         245 NVEGNLFEM  253 (277)
Q Consensus       245 ~l~~n~~~~  253 (277)
                      ++++|.++.
T Consensus       256 ~l~~n~i~~  264 (319)
T cd00116         256 SLSCNDITD  264 (319)
T ss_pred             EccCCCCCc
Confidence            999999873

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618|consensus

Probab=99.60  E-value=3.2e-17  Score=149.86  Aligned_cols=196  Identities=22%  Similarity=0.329  Sum_probs=141.6

Q ss_pred             ccCccCEEEeecCCCCcCChhHHHhhcc-ccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCc-ccCccccCcccCce
Q psy3567          51 TAKKTGVINLSHQGFKEFPDEMNELKAV-LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE-SLPKDIGTLEKLEN  127 (277)
Q Consensus        51 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~  127 (277)
                      ..+.|++|+|..|++.++|+.++..... ++.|..+.+.++..|.. =..++.|+.|++.+|.++ ...+.+.+++.|+.
T Consensus       308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            3444455555555555555443333222 44444444444444421 223466788888888887 45677889999999


Q ss_pred             eecccccccccch-hhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCc
Q psy3567         128 VSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICH  205 (277)
Q Consensus       128 L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~  205 (277)
                      |+++.|++..+|+ .+.+++.|++|++++|++..+|..+..+..|++|...+|.+..+| .+..+ .++.+|++.|+++.
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence            9999999999986 489999999999999999999999999999999999999999999 45555 59999999999994


Q ss_pred             C--CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         206 I--SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       206 l--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      +  +.... .++|++||++||.-. ..-...+..++++..+++.-+
T Consensus       467 ~~l~~~~p-~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  467 VTLPEALP-SPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhCC-CcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence            4  33332 289999999999733 122345666777777777666

>KOG0532|consensus

Probab=99.58  E-value=4.1e-17  Score=142.30  Aligned_cols=204  Identities=27%  Similarity=0.407  Sum_probs=182.0

Q ss_pred             hHhhhccCccCEEEeecCCCCcCChhHHHh-hccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCccc
Q psy3567          46 KRHFETAKKTGVINLSHQGFKEFPDEMNEL-KAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEK  124 (277)
Q Consensus        46 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~  124 (277)
                      ...+.....-.+|.|++.+++++|..-+.. .......+++.|++..+|..++.+..|+.+.++.|.+..+|.+++.+..
T Consensus        43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~  122 (722)
T KOG0532|consen   43 ERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEA  122 (722)
T ss_pred             hHHHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhH
Confidence            356666667788999999999888654442 3556678999999999999999999999999999999999999999999


Q ss_pred             CceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCcc
Q psy3567         125 LENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQI  203 (277)
Q Consensus       125 L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l  203 (277)
                      |.+++++.|.+..+|..+..++ |+.|.+++|+++.+|..++....|..|+.+.|.+..+|..++.+ +++.+.+..|++
T Consensus       123 lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  123 LTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL  201 (722)
T ss_pred             HHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh
Confidence            9999999999999998776665 88899999999999999998899999999999999999988776 589999999999


Q ss_pred             CcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         204 CHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       204 ~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ..+|..+. .-.|..||++.|++.  .+|.+|.+|..|++|-|.+|++..
T Consensus       202 ~~lp~El~-~LpLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  202 EDLPEELC-SLPLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhCCHHHh-CCceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCC
Confidence            99999988 567999999999998  899999999999999999998874

>KOG4237|consensus

Probab=99.54  E-value=6.6e-16  Score=129.49  Aligned_cols=127  Identities=30%  Similarity=0.355  Sum_probs=95.8

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccC-CcCcccCc-cccCcccCceeec
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQ-NKIESLPK-DIGTLEKLENVSG  130 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~-~~i~~~~~-~~~~l~~L~~L~l  130 (277)
                      ..+.++|..|.|+.+|++.|+-.++|+.|++++|+|+.+ |..|..+..+..|.+.+ |+|+.+|+ .|+++..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            446688888888888888887778888888888888866 44688888877766655 78888876 6778888888888


Q ss_pred             ccccccccc-hhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCC
Q psy3567         131 NCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNR  180 (277)
Q Consensus       131 ~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~  180 (277)
                      .-|.+.-++ ..|..++++..|.+.+|.+..++. .+..+..++++.+..|.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            888877665 457888888888888888777765 44456677777666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.47  E-value=1.1e-13  Score=122.21  Aligned_cols=192  Identities=29%  Similarity=0.454  Sum_probs=136.2

Q ss_pred             EEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccC-CCcEEeccCCcCcccCccccCcccCceeecccccc
Q psy3567          57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQ-LLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLI  135 (277)
Q Consensus        57 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~  135 (277)
                      .+++.++.+..-...+... +.++.|++.++++..+++....+. +|+.|++++|.+..++..++.+++|+.|+++.|.+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~-~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLEL-TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcc-cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            4677777664333344444 567778888888877777766664 78888888888877777777788888888888888


Q ss_pred             cccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcCccCCC
Q psy3567         136 KELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDISECV  214 (277)
Q Consensus       136 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~  214 (277)
                      ..++...+..+.|+.|++++|++..+|........|+++.+++|.+...+..+...+ +..+.+.+|++..++..++.++
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            877766667777888888888888777655555567778888776555555554443 6666677777777777777777


Q ss_pred             CCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         215 RLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      +++.|++++|.++  .++. +....+++.+++++|.+.
T Consensus       256 ~l~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         256 NLETLDLSNNQIS--SISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccceecccccccc--cccc-ccccCccCEEeccCcccc
Confidence            7888888888776  4444 667777888888877665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.45  E-value=1.2e-13  Score=122.05  Aligned_cols=179  Identities=31%  Similarity=0.483  Sum_probs=158.1

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhc-cccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccC
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKA-VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKL  125 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L  125 (277)
                      ..+...+.++.+++.++.++.+++..... . +|+.|++++|++..+|..+..++.|+.|++++|.+..++......+.|
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~-~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPPLIGLL-KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhhhcccceeEEecCCcccccCccccccc-hhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence            44555578999999999999999876654 4 899999999999999888899999999999999999998887789999


Q ss_pred             ceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccC
Q psy3567         126 ENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQIC  204 (277)
Q Consensus       126 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~  204 (277)
                      +.+++++|.+..+|........|+++.+++|.....+..+..+.++..+.+..|++..++..++.+. ++++++++|+++
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            9999999999999977667778999999999777777788888999999999999888777777775 999999999999


Q ss_pred             cCCcCccCCCCCCEEEcCCCccc
Q psy3567         205 HISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       205 ~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      .++. ++...+++.+++++|.+.
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccc-ccccCccCEEeccCcccc
Confidence            9988 888899999999999876

>KOG1259|consensus

Probab=99.27  E-value=2.5e-12  Score=105.00  Aligned_cols=204  Identities=21%  Similarity=0.211  Sum_probs=114.1

Q ss_pred             HhhhccCccCEEEeecC-------CCC--cCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCccc--
Q psy3567          47 RHFETAKKTGVINLSHQ-------GFK--EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL--  115 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~-------~i~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~--  115 (277)
                      ..+.-+.+|+.|-.++.       +|.  .+|..+... .+|..+.+++|.-..+..-...-|-|+.+...+..+...  
T Consensus       176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f-~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~  254 (490)
T KOG1259|consen  176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAF-RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS  254 (490)
T ss_pred             HHHHhhhheeEEEecCCCCCCccccccccccccchHHh-hhhheeeeeccchhheeceeecCchhheeeeeccccccccc
Confidence            34455566666665553       222  333333333 556666666665443333333334455555544443311  


Q ss_pred             --Cc--------------------cccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCE
Q psy3567         116 --PK--------------------DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV  173 (277)
Q Consensus       116 --~~--------------------~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~  173 (277)
                        |.                    ....+..|+++|+++|.+..+-.+..-+++++.|++++|.+..+.. +..+++|+.
T Consensus       255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~  333 (490)
T KOG1259|consen  255 LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQL  333 (490)
T ss_pred             ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceE
Confidence              10                    1223445667777777777666666666777777777777766643 556677777


Q ss_pred             EEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         174 LDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       174 L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      ||+++|.++.+..|-..+ ++.+|.++.|.|..+. .++.+-+|..||+++|+|.-..-...++++|-|+.+.|.+|++.
T Consensus       334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            777777776665554433 3666667766666553 24455566677777776652222244566666666667776665


Q ss_pred             e
Q psy3567         253 M  253 (277)
Q Consensus       253 ~  253 (277)
                      .
T Consensus       413 ~  413 (490)
T KOG1259|consen  413 G  413 (490)
T ss_pred             c
Confidence            3

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=6.9e-12  Score=97.05  Aligned_cols=127  Identities=30%  Similarity=0.412  Sum_probs=41.8

Q ss_pred             cCceeecccccccccchhhh-cCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhc-cc-eeeEEEccC
Q psy3567         124 KLENVSGNCNLIKELPLSFS-KLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIG-KM-KVIEMNLNK  200 (277)
Q Consensus       124 ~L~~L~l~~n~~~~l~~~~~-~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~-~~-~l~~L~l~~  200 (277)
                      ++++|++.+|.+..+. .++ .+.+|+.|++++|.+.+++ .+..++.|++|++++|.++.++..+. .+ .+++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            3444555555544442 222 3455566666666665553 34455666666666666665544332 22 366666666


Q ss_pred             CccCcCCc--CccCCCCCCEEEcCCCccccCccC--ccccCCCCccEEEcCCCeeeec
Q psy3567         201 NQICHISP--DISECVRLKILRLEENCLAINAIP--TCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       201 n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      |+|..+..  .+..+++|++|++.+|++....-.  ..+..+|+|+.||  +..++.+
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD--~~~V~~~  153 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD--GQDVTEE  153 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET--TEETTS-
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC--CEEccHH
Confidence            66665443  366788899999999988722111  1356678888864  4444443

>KOG1909|consensus

Probab=99.26  E-value=2.4e-13  Score=112.58  Aligned_cols=229  Identities=23%  Similarity=0.278  Sum_probs=145.1

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCC----cCChhHHHh------hccccEEE
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK----EFPDEMNEL------KAVLRTLD   83 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~~~~~~~~~------~~~L~~L~   83 (277)
                      ...++.++|+||.+.-.-...+          .+.+.+-++|+..++++-.-.    ++|+.+.-+      +++|++++
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i----------~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAI----------AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHH----------HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence            4577889999998765533332          245666677777777764222    455433222      25778888


Q ss_pred             ccCCCCC-cCCc----cccccCCCcEEeccCCcCccc--------------CccccCcccCceeeccccccccc-----c
Q psy3567          84 ISQNKIS-KFPL----DLASYQLLKSLTFDQNKIESL--------------PKDIGTLEKLENVSGNCNLIKEL-----P  139 (277)
Q Consensus        84 l~~~~i~-~~~~----~~~~l~~L~~L~l~~~~i~~~--------------~~~~~~l~~L~~L~l~~n~~~~l-----~  139 (277)
                      |++|-+. .-++    -++++..|++|.+.+|.+...              .+..+.-+.|+.+..++|++..-     .
T Consensus        99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen   99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence            8887766 2222    255677788888888777522              12234556677888888877643     3


Q ss_pred             hhhhcCCCCCEEEccCCCCcc-----CccccCCCCCCCEEEccCCCCc-----ccCchhccce-eeEEEccCCccC----
Q psy3567         140 LSFSKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKMK-VIEMNLNKNQIC----  204 (277)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~~-l~~L~l~~n~l~----  204 (277)
                      ..|...+.|+.+.+..|.+..     +..++..++.|+.|++.+|.++     .+...+..++ ++++++++|.+.    
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA  258 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence            346666778888887777651     2345567788888888888776     2334444444 778888888776    


Q ss_pred             -cCCcCc-cCCCCCCEEEcCCCccccC---ccCccccCCCCccEEEcCCCeee
Q psy3567         205 -HISPDI-SECVRLKILRLEENCLAIN---AIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       205 -~l~~~l-~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                       .+...+ ...|+|..+.+.+|.++..   .+..++...+.|.+|+|++|.+.
T Consensus       259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence             232332 2357888888888887621   23334556778888888888883

>KOG3207|consensus

Probab=99.23  E-value=1.7e-12  Score=110.54  Aligned_cols=63  Identities=21%  Similarity=0.247  Sum_probs=26.7

Q ss_pred             ccCccCEEEeecCCCCcCCh-hHHHhhccccEEEccCCCCCc---CCccccccCCCcEEeccCCcCc
Q psy3567          51 TAKKTGVINLSHQGFKEFPD-EMNELKAVLRTLDISQNKISK---FPLDLASYQLLKSLTFDQNKIE  113 (277)
Q Consensus        51 ~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~i~~---~~~~~~~l~~L~~L~l~~~~i~  113 (277)
                      ++++|+.+.|.++.+...+. ...+.+++++.|++++|-+..   +.....++++|+.|+++.|++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            34444555555555443331 122223555555555543331   1112234455555555555443

>KOG1259|consensus

Probab=99.23  E-value=1.3e-12  Score=106.51  Aligned_cols=207  Identities=20%  Similarity=0.286  Sum_probs=149.2

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC------------------------ccccccCCCc
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP------------------------LDLASYQLLK  103 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~------------------------~~~~~l~~L~  103 (277)
                      .+.-+++|+.+.++.+.-.++..-... .|.|+++..++..++..|                        ..+.-.+-|+
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~-kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt  287 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENIVDIELL-KPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT  287 (490)
T ss_pred             chHHhhhhheeeeeccchhheeceeec-CchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence            344556666666666654444332222 266777777666554211                        0122346689


Q ss_pred             EEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcc
Q psy3567         104 SLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIES  183 (277)
Q Consensus       104 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~  183 (277)
                      ++|++.|.|..+.++..-.+.++.|+++.|++..+.. +..+++|+.||+++|.++++..+-..+.+.++|.++.|.+..
T Consensus       288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             hccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence            9999999999999999999999999999999998754 888999999999999999886655578899999999999886


Q ss_pred             cCchhccc-eeeEEEccCCccCcCCc--CccCCCCCCEEEcCCCccccCccCcccc----CC-CCccEEEcCCCeeeecc
Q psy3567         184 IPDGIGKM-KVIEMNLNKNQICHISP--DISECVRLKILRLEENCLAINAIPTCIL----TS-SNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       184 l~~~~~~~-~l~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~----~~-~~L~~l~l~~n~~~~~~  255 (277)
                      +.. ++.+ ++..||+.+|+|..+..  .++++|.|.++.|.+|++.  .+++.-.    .+ ..-.++.|.+-.-+..+
T Consensus       367 LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~--~~vdYRTKVLa~FGERaSE~~LD~~~~~~~E  443 (490)
T KOG1259|consen  367 LSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA--GSVDYRTKVLARFGERASEISLDNEPGNQQE  443 (490)
T ss_pred             hhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc--ccchHHHHHHHHHhhhhhheecCCCCcchhh
Confidence            654 3333 58899999999997764  4899999999999999997  4554322    22 23345666665555444


Q ss_pred             cccc
Q psy3567         256 FQQL  259 (277)
Q Consensus       256 ~~~l  259 (277)
                      +..+
T Consensus       444 LDTV  447 (490)
T KOG1259|consen  444 LDTV  447 (490)
T ss_pred             hhHH
Confidence            4443

>KOG1909|consensus

Probab=99.21  E-value=1.3e-12  Score=108.35  Aligned_cols=180  Identities=22%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             HhhhccCccCEEEeecCCCC-cCChhHHHh---hccccEEEccCCCCCcCCc--------------cccccCCCcEEecc
Q psy3567          47 RHFETAKKTGVINLSHQGFK-EFPDEMNEL---KAVLRTLDISQNKISKFPL--------------DLASYQLLKSLTFD  108 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~---~~~L~~L~l~~~~i~~~~~--------------~~~~l~~L~~L~l~  108 (277)
                      +++..+++|++++|++|.|. ..++.+..+   +..|++|.+.+|.+.....              -...-+.|+.+...
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            45555566666666666555 222211111   3556666666665542111              12233556666666


Q ss_pred             CCcCccc-----CccccCcccCceeecccccccc-----cchhhhcCCCCCEEEccCCCCc-----cCccccCCCCCCCE
Q psy3567         109 QNKIESL-----PKDIGTLEKLENVSGNCNLIKE-----LPLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDV  173 (277)
Q Consensus       109 ~~~i~~~-----~~~~~~l~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~  173 (277)
                      +|++..-     ...+...+.|+.+.+..|.+..     +...+..+++|+.||+.+|-++     .+...+..|+.|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            6665522     2334555566666666665541     1234555666666666666555     23344455566666


Q ss_pred             EEccCCCCc-----ccCchhcc--ceeeEEEccCCccC-----cCCcCccCCCCCCEEEcCCCcc
Q psy3567         174 LDLSFNRIE-----SIPDGIGK--MKVIEMNLNKNQIC-----HISPDISECVRLKILRLEENCL  226 (277)
Q Consensus       174 L~l~~n~l~-----~l~~~~~~--~~l~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~  226 (277)
                      +.+++|.+.     .+...+..  .++..+.+.+|.|+     .+..++...+.|..|++++|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            666666554     11111211  13556666666665     2333344455666666666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=2.3e-11  Score=94.16  Aligned_cols=111  Identities=26%  Similarity=0.311  Sum_probs=44.9

Q ss_pred             hhcCCCCCEEEccCCCCccCccccC-CCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCc-cCCCCCCEE
Q psy3567         142 FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDI-SECVRLKIL  219 (277)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~~l~-~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l-~~~~~L~~L  219 (277)
                      +.+..++++|++.+|.+..+. .++ .+.+|+.|++++|.++.++..-....+++|++++|+|+.+...+ ..+++|++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            445567899999999999884 565 58899999999999998765333335999999999999997665 468999999


Q ss_pred             EcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       220 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++++|++..-.--..+..+++|+.|++.+|++..
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            9999999733333567889999999999999974

>KOG3207|consensus

Probab=99.12  E-value=1.3e-11  Score=105.19  Aligned_cols=180  Identities=26%  Similarity=0.249  Sum_probs=135.1

Q ss_pred             hhhccCccCEEEeecCCCCcCC--hhHHHhhccccEEEccCCCCCcCCcc--ccccCCCcEEeccCCcCc--ccCccccC
Q psy3567          48 HFETAKKTGVINLSHQGFKEFP--DEMNELKAVLRTLDISQNKISKFPLD--LASYQLLKSLTFDQNKIE--SLPKDIGT  121 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~l~~L~~L~l~~~~i~--~~~~~~~~  121 (277)
                      ....|+.++.|||++|-|..+-  ..+..-+++|+.|+++.|.+.....+  -..+++|+.|.++.|.++  .+-.....
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            5678999999999999777332  12333349999999999988744332  235788999999999998  33345667


Q ss_pred             cccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCccCc--cccCCCCCCCEEEccCCCCccc--Cch------hcc
Q psy3567         122 LEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLNKFP--TVLFNLQHLDVLDLSFNRIESI--PDG------IGK  190 (277)
Q Consensus       122 l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l~~n~l~~l--~~~------~~~  190 (277)
                      +++++.|++..|... .-.....-+..|+.||+++|++-.++  ...+.++.|..|.++.|+++++  |+.      .--
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            899999999988522 22223455678999999999998876  5677899999999999999843  433      112


Q ss_pred             ceeeEEEccCCccCcCCc--CccCCCCCCEEEcCCCccc
Q psy3567         191 MKVIEMNLNKNQICHISP--DISECVRLKILRLEENCLA  227 (277)
Q Consensus       191 ~~l~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~  227 (277)
                      .+++.|++..|++..++.  .+..+++|+.+.+..|.++
T Consensus       301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            368899999999987765  3677888999998888886

>KOG4658|consensus

Probab=99.08  E-value=1.2e-10  Score=110.89  Aligned_cols=225  Identities=20%  Similarity=0.278  Sum_probs=126.6

Q ss_pred             CcchhhhcC-CCCCCC---CceeEecCCCCcCCCCC-----CceeeeccCCcchh--HhhhccCccCEEEeecCC--CCc
Q psy3567           1 MQVLTEDFG-WDPSSP---SKLTLLLPGKKNRGLIE-----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQG--FKE   67 (277)
Q Consensus         1 ~~~l~~~~~-~~~~~~---~l~~l~l~~~~~~~~~~-----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~--i~~   67 (277)
                      |||+++||+ |+...-   ....+--.+.+++. .|     .....++..++.+.  ..=..++.|++|-+.++.  +..
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~  561 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE  561 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence            899999998 433210   11122222222222 22     12233443333332  122334568888888875  667


Q ss_pred             CChhHHHhhccccEEEccCC-CCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc-cchhhhcC
Q psy3567          68 FPDEMNELKAVLRTLDISQN-KISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKL  145 (277)
Q Consensus        68 ~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l  145 (277)
                      ++..++...+.|++||+++| .+..+|..++.+.+|++|+++++.+..+|.+++.+..|.+|++..+.... +|.....+
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence            77777776688888888876 45688888888888888888888888888888888888888887666543 33445558


Q ss_pred             CCCCEEEccCCCCcc---CccccCCCCCCCEEEccCCCC---cccCchhccce-eeEEEccCCccCcCCcCccCCCCCCE
Q psy3567         146 HNLKHLSLSQNQLNK---FPTVLFNLQHLDVLDLSFNRI---ESIPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKI  218 (277)
Q Consensus       146 ~~L~~L~l~~n~l~~---~~~~l~~~~~L~~L~l~~n~l---~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L~~  218 (277)
                      .+|++|.+.......   .-..+..+..|+.+.......   ..+-....... .+.+.+.++.....+..++.+.+|+.
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~  721 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEE  721 (889)
T ss_pred             ccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcce
Confidence            888888876654221   112223344444444432221   01100000001 11222223334445555666666666


Q ss_pred             EEcCCCcc
Q psy3567         219 LRLEENCL  226 (277)
Q Consensus       219 L~l~~n~~  226 (277)
                      |.+.++.+
T Consensus       722 L~i~~~~~  729 (889)
T KOG4658|consen  722 LSILDCGI  729 (889)
T ss_pred             EEEEcCCC
Confidence            66666655

>KOG0531|consensus

Probab=98.92  E-value=8.7e-11  Score=104.36  Aligned_cols=196  Identities=28%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             ccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeec
Q psy3567          51 TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSG  130 (277)
Q Consensus        51 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l  130 (277)
                      .+..++.+.+..+.+..+-..+..+ .+++.|++.+|.|..+...+..+++|++|++++|.|+.+. .+..+..|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccc-cceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence            4455555666666666533223333 6677777777777766655666777777777777776653 3344555777777


Q ss_pred             ccccccccchhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcC
Q psy3567         131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD  209 (277)
Q Consensus       131 ~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~  209 (277)
                      .+|.+..+. .+..++.|+.+++++|.+..+... ...+.+++.+.+.+|.+..+...-....+..+++..|.++.+...
T Consensus       148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l  226 (414)
T KOG0531|consen  148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL  226 (414)
T ss_pred             ccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc
Confidence            777777654 344466777777777777766442 345666777777777665433221111223335555555543221


Q ss_pred             ccCCC--CCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         210 ISECV--RLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       210 l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      . ...  .|+.+++++|.+.  .++..+..+..+..+++.+|.++
T Consensus       227 ~-~~~~~~L~~l~l~~n~i~--~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  227 N-ELVMLHLRELYLSGNRIS--RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             c-cchhHHHHHHhcccCccc--cccccccccccccccchhhcccc
Confidence            1 111  2555666666554  22233444455555555555444

>KOG1859|consensus

Probab=98.91  E-value=2.5e-11  Score=109.49  Aligned_cols=127  Identities=28%  Similarity=0.283  Sum_probs=80.4

Q ss_pred             cCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchh-ccceeeEEEccCCc
Q psy3567         124 KLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKMKVIEMNLNKNQ  202 (277)
Q Consensus       124 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~~l~~L~l~~n~  202 (277)
                      .|...++++|.+..+-.++.-++.++.|++++|++.++. .+..++.|.+||++.|.++.+|.-. ...++..|.+.+|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~  243 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA  243 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence            455566666766665556666677777777777777664 5666777777777777777665432 22346677777777


Q ss_pred             cCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         203 ICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       203 l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      ++.+-. +.++++|..||+++|.+....--..++.+..|+.|+|.||++-
T Consensus       244 l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  244 LTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            776532 4566777777777777652221234555667777777777654

>KOG2982|consensus

Probab=98.82  E-value=1.4e-09  Score=88.87  Aligned_cols=106  Identities=20%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             ccCEEEeecCCCCcC--ChhHHHhhccccEEEccCCCCC---cCCccccccCCCcEEeccCCcCcccCccc-cCcccCce
Q psy3567          54 KTGVINLSHQGFKEF--PDEMNELKAVLRTLDISQNKIS---KFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLEN  127 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~~~i~---~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-~~l~~L~~  127 (277)
                      .+..+.+.++.|-..  ...+...++.++.+|+.+|.|+   .+...+.++|.|+.|+++.|.+.....++ ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344555555555422  1223333466666666666665   23333456666666666666665443333 35556666


Q ss_pred             eeccccccc--ccchhhhcCCCCCEEEccCCCCc
Q psy3567         128 VSGNCNLIK--ELPLSFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus       128 L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~l~  159 (277)
                      +.+.+..+.  .+...+..+|++++|.++.|++.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            666665554  33444555666666666666443

>KOG0531|consensus

Probab=98.82  E-value=6.2e-10  Score=98.92  Aligned_cols=176  Identities=25%  Similarity=0.344  Sum_probs=111.9

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN  127 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~  127 (277)
                      .++.++++..+++.+|.|..+...+..+ .+|++|++++|.|+.+.+ +..++.|+.|++.+|.|..+. .+..+..|+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~-~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSL-VNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSLKL  166 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhh-hcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhhhc
Confidence            3677788888888888888776544445 788888888888876543 455666888888888887664 3444777888


Q ss_pred             eecccccccccchh-hhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc--eeeEEEccCCccC
Q psy3567         128 VSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQIC  204 (277)
Q Consensus       128 L~l~~n~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~--~l~~L~l~~n~l~  204 (277)
                      ++++.|.+..+... ...+.+++.+.+.+|.+..+ ..+.....+..+++..|.++.+...-...  .++++++.+|++.
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc
Confidence            88888888776543 46677777788888776655 22223334444456666555332211111  2556666666666


Q ss_pred             cCCcCccCCCCCCEEEcCCCccc
Q psy3567         205 HISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       205 ~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      .++..+...+.+..+++..|.+.
T Consensus       246 ~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  246 RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cccccccccccccccchhhcccc
Confidence            55544555566666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=2.7e-09  Score=68.14  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCc
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNK  111 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~  111 (277)
                      +|++|++++|+++.+|+..+..+++|++|++++|++..+++ .|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45566666666666665555544666666666666665543 35666666666666554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=1.3e-08  Score=64.95  Aligned_cols=58  Identities=26%  Similarity=0.415  Sum_probs=46.4

Q ss_pred             eeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCee
Q psy3567         193 VIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF  251 (277)
Q Consensus       193 l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~  251 (277)
                      +++|++++|+++.+|.. +..+++|++|++++|+++ ..-+..+..+++|++|++++|++
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            67788888888888864 778888999999988887 34456788888899999888864

...

>KOG4658|consensus

Probab=98.68  E-value=1.3e-08  Score=97.34  Aligned_cols=202  Identities=19%  Similarity=0.281  Sum_probs=139.9

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCC--CCcCCcc-ccccCCCcEEeccCC-cCcccCccccCcc
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNK--ISKFPLD-LASYQLLKSLTFDQN-KIESLPKDIGTLE  123 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~-~~~l~~L~~L~l~~~-~i~~~~~~~~~l~  123 (277)
                      ...+....+.+.+.++.+..++....  ++.+++|-+..|.  +..++.. |..++.|++||+++| .+..+|..++.+.
T Consensus       518 ~~~~~~~~rr~s~~~~~~~~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  518 QVKSWNSVRRMSLMNNKIEHIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             cccchhheeEEEEeccchhhccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            34455677899999999987776432  2679999999986  6666664 788999999999977 6778999999999


Q ss_pred             cCceeecccccccccchhhhcCCCCCEEEccCCCCc-cCccccCCCCCCCEEEccCCCCc---ccCchhccc-eeeEEEc
Q psy3567         124 KLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE---SIPDGIGKM-KVIEMNL  198 (277)
Q Consensus       124 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~l~---~l~~~~~~~-~l~~L~l  198 (277)
                      +|++|+++++.+..+|.++.++.+|.+|++..+... .+|.....+++|++|.+......   ..-..+..+ .|+.+..
T Consensus       596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999999999999999999999999999887654 44555556999999999766532   111222222 1333333


Q ss_pred             cCCccCcCCcCccCCCCCC----EEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         199 NKNQICHISPDISECVRLK----ILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       199 ~~n~l~~l~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      ..... .+-..+..++.|.    .+.+.++..  ...+..+..+.+++.|.+.++.....
T Consensus       676 ~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  676 TISSV-LLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             ecchh-HhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCCchh
Confidence            22222 1112222233322    233222222  24556777888999999999877643

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=5e-08  Score=90.88  Aligned_cols=105  Identities=25%  Similarity=0.395  Sum_probs=73.8

Q ss_pred             CCEEEccCCCCc-cCccccCCCCCCCEEEccCCCCc-ccCchhccce-eeEEEccCCccC-cCCcCccCCCCCCEEEcCC
Q psy3567         148 LKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQIC-HISPDISECVRLKILRLEE  223 (277)
Q Consensus       148 L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~  223 (277)
                      ++.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..++.++ |+.|++++|+++ .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            566777777776 56667777777777777777776 5666666664 777777777777 5666677777788888877


Q ss_pred             CccccCccCccccCC-CCccEEEcCCCeeee
Q psy3567         224 NCLAINAIPTCILTS-SNVCTLNVEGNLFEM  253 (277)
Q Consensus       224 n~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~  253 (277)
                      |.++ +.+|..+... .++..+++.+|...+
T Consensus       500 N~l~-g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLS-GRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             Cccc-ccCChHHhhccccCceEEecCCcccc
Confidence            7777 6777766543 355667777775433

>KOG1859|consensus

Probab=98.66  E-value=4.1e-10  Score=101.80  Aligned_cols=126  Identities=25%  Similarity=0.347  Sum_probs=103.3

Q ss_pred             CCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCC
Q psy3567         100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN  179 (277)
Q Consensus       100 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n  179 (277)
                      -.|...+++.|++..+..++.-++.++.|+++.|.+..+. .+..+++|++||+++|.+..+|..-..-..|+.|.+++|
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence            4577778888999888889999999999999999998775 788999999999999999988753333345999999999


Q ss_pred             CCcccCchhccce-eeEEEccCCccCcCCcC--ccCCCCCCEEEcCCCccc
Q psy3567         180 RIESIPDGIGKMK-VIEMNLNKNQICHISPD--ISECVRLKILRLEENCLA  227 (277)
Q Consensus       180 ~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n~~~  227 (277)
                      .++.+.. +.+++ ++.||+++|-+.....-  ++.+..|+.|+|.||++-
T Consensus       243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9886643 34454 88999999988865543  677889999999999885

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=1.3e-07  Score=88.11  Aligned_cols=104  Identities=27%  Similarity=0.467  Sum_probs=86.9

Q ss_pred             CCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc-cCccccCCCCCCCEEEcc
Q psy3567         101 LLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLS  177 (277)
Q Consensus       101 ~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~  177 (277)
                      .++.|+++++.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++.+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788899999887 56788899999999999999887 78888999999999999999988 678888899999999999


Q ss_pred             CCCCc-ccCchhccc--eeeEEEccCCccC
Q psy3567         178 FNRIE-SIPDGIGKM--KVIEMNLNKNQIC  204 (277)
Q Consensus       178 ~n~l~-~l~~~~~~~--~l~~L~l~~n~l~  204 (277)
                      +|.++ .+|..++..  .+..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            99888 678777653  3567888887643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.58  E-value=1.6e-08  Score=81.88  Aligned_cols=208  Identities=16%  Similarity=0.167  Sum_probs=120.6

Q ss_pred             HhhhccCccCEEEeecCCCC-----cCChhHHHhhccccEEEccCCCCC----cC-------CccccccCCCcEEeccCC
Q psy3567          47 RHFETAKKTGVINLSHQGFK-----EFPDEMNELKAVLRTLDISQNKIS----KF-------PLDLASYQLLKSLTFDQN  110 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~~L~~L~l~~~~i~----~~-------~~~~~~l~~L~~L~l~~~  110 (277)
                      ..+..+..++.++|++|.|.     .+...+..- .+|+...+++--..    .+       .+.+.++|+++.+++++|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~-~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANV-RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhh-cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            44555677777888888776     233333333 55666555543222    12       233556778888888887


Q ss_pred             cCcc-cCc----cccCcccCceeecccccccccch-----h---------hhcCCCCCEEEccCCCCccCccc-----cC
Q psy3567         111 KIES-LPK----DIGTLEKLENVSGNCNLIKELPL-----S---------FSKLHNLKHLSLSQNQLNKFPTV-----LF  166 (277)
Q Consensus       111 ~i~~-~~~----~~~~l~~L~~L~l~~n~~~~l~~-----~---------~~~l~~L~~L~l~~n~l~~~~~~-----l~  166 (277)
                      .+.. .|+    -+.....|.+|.+++|+++.+..     .         ...-+.|+.+.++.|++...+..     +.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            7752 222    34566677888888887774421     1         12345688888888877644332     22


Q ss_pred             CCCCCCEEEccCCCCc--ccCch-----hccceeeEEEccCCccCc-----CCcCccCCCCCCEEEcCCCccccCccCcc
Q psy3567         167 NLQHLDVLDLSFNRIE--SIPDG-----IGKMKVIEMNLNKNQICH-----ISPDISECVRLKILRLEENCLAINAIPTC  234 (277)
Q Consensus       167 ~~~~L~~L~l~~n~l~--~l~~~-----~~~~~l~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~~~~~~~~  234 (277)
                      ....|.++.+..|+|.  .+.--     .....+..||+++|-++.     +...+..++.|+.|.+..|.+........
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            3457788888888776  12111     122247778888888772     33345566677888888777663332222


Q ss_pred             ccC-----CCCccEEEcCCCeeeecc
Q psy3567         235 ILT-----SSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       235 ~~~-----~~~L~~l~l~~n~~~~~~  255 (277)
                      +..     .|+|..|....|...+..
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCce
Confidence            221     356677766666555444

>KOG4579|consensus

Probab=98.53  E-value=3.4e-09  Score=77.12  Aligned_cols=57  Identities=25%  Similarity=0.366  Sum_probs=22.6

Q ss_pred             CCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcCccCCCCCCEEEcCCCcc
Q psy3567         170 HLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRLEENCL  226 (277)
Q Consensus       170 ~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~  226 (277)
                      ..+++++++|.++++|..+..++ ++.++++.|.+...|..+..+.++..|+.-+|..
T Consensus        78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            33334444444444443333332 3334444444443333333344444444444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.50  E-value=1.9e-08  Score=81.49  Aligned_cols=169  Identities=21%  Similarity=0.247  Sum_probs=94.5

Q ss_pred             CCCceeEecCCCCcCCCCCCcee-------eeccCC------cch-----------hHhhhccCccCEEEeecCCCC-cC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIF-------VLKMGN------SAT-----------KRHFETAKKTGVINLSHQGFK-EF   68 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~-------~l~~~~------~~~-----------~~~l~~~~~L~~L~l~~~~i~-~~   68 (277)
                      ...+++++|+||.++..-+..++       .+.+.+      +..           .+++-+|+.+++++|++|.|. .+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            45788899999988766443331       111111      000           166667777777777777776 45


Q ss_pred             ChhHHHh---hccccEEEccCCCCCcCCcc--------------ccccCCCcEEeccCCcCcccCc-----cccCcccCc
Q psy3567          69 PDEMNEL---KAVLRTLDISQNKISKFPLD--------------LASYQLLKSLTFDQNKIESLPK-----DIGTLEKLE  126 (277)
Q Consensus        69 ~~~~~~~---~~~L~~L~l~~~~i~~~~~~--------------~~~l~~L~~L~l~~~~i~~~~~-----~~~~l~~L~  126 (277)
                      |+.+..+   ...|.+|.+++|.+..+...              .++-|.|+.+....|++...+.     .+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            5443332   25667777777766533321              1234566666666666654332     233345666


Q ss_pred             eeecccccccc--c----chhhhcCCCCCEEEccCCCCcc-----CccccCCCCCCCEEEccCCCCc
Q psy3567         127 NVSGNCNLIKE--L----PLSFSKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       127 ~L~l~~n~~~~--l----~~~~~~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~l~  182 (277)
                      .+.+..|.+..  +    -..+..+.+|+.||+.+|-++.     +...+..|+.|+.|.+.+|-++
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            66666666652  1    1224445666667776666651     2334455666666666666554

>KOG1644|consensus

Probab=98.45  E-value=3.7e-07  Score=70.87  Aligned_cols=121  Identities=18%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             CCCceeEecCCCCcC-----CCCCCceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccC
Q psy3567          14 SPSKLTLLLPGKKNR-----GLIEGTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQ   86 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~-----~~~~~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~   86 (277)
                      +...++++|++..+.     |.+-..+..+.+.++.+.  ..|..++.|.+|.+++|+|+.+.+.+....+++..|.+.+
T Consensus        18 ~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   18 SVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             hccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            445666777776542     222234444555555553  5667777777777777777777777777767777777777


Q ss_pred             CCCCcCCc--cccccCCCcEEeccCCcCcccC----ccccCcccCceeeccccc
Q psy3567          87 NKISKFPL--DLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNCNL  134 (277)
Q Consensus        87 ~~i~~~~~--~~~~l~~L~~L~l~~~~i~~~~----~~~~~l~~L~~L~l~~n~  134 (277)
                      |++..+.+  .+..++.|++|.+-+|.++...    .-+..+++|+.||+..-.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77775443  3566777777777777766432    134556666666654433

>KOG4579|consensus

Probab=98.41  E-value=2.8e-08  Score=72.39  Aligned_cols=94  Identities=29%  Similarity=0.417  Sum_probs=59.0

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE  126 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~  126 (277)
                      ..+.....|+..++++|.++.+|+.+...++.+++|++.+|.++.+|..++.++.|+.++++.|.+...|..+..+.++-
T Consensus        47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD  126 (177)
T ss_pred             HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence            34455556666667777666666666555556666666666666666666666666666666666666666555555666


Q ss_pred             eeecccccccccch
Q psy3567         127 NVSGNCNLIKELPL  140 (277)
Q Consensus       127 ~L~l~~n~~~~l~~  140 (277)
                      .|+..+|....++.
T Consensus       127 ~Lds~~na~~eid~  140 (177)
T KOG4579|consen  127 MLDSPENARAEIDV  140 (177)
T ss_pred             HhcCCCCccccCcH
Confidence            66655555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.39  E-value=1.4e-06  Score=75.93  Aligned_cols=135  Identities=18%  Similarity=0.303  Sum_probs=86.4

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCC-CCCcCCccccccCCCcEEeccCC-cCcccCccccCccc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN-KISKFPLDLASYQLLKSLTFDQN-KIESLPKDIGTLEK  124 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~l~~  124 (277)
                      ..+..+++++.|++++|.++.+|    .++++|+.|.+++| .++.+|..+.  .+|++|++++| .+..+|.      .
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s  113 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S  113 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence            44667899999999999999998    35578999999886 4556666542  57999999988 6666654      3


Q ss_pred             Cceeeccccccc---ccchhhhcCCCCCEEEccCCCCc---cCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEc
Q psy3567         125 LENVSGNCNLIK---ELPLSFSKLHNLKHLSLSQNQLN---KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL  198 (277)
Q Consensus       125 L~~L~l~~n~~~---~l~~~~~~l~~L~~L~l~~n~l~---~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l  198 (277)
                      |+.|++.++...   .+|.      +|+.|.+.+++..   .++..+  .++|++|++++|....+|..+. ..++.|++
T Consensus       114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP-~SLk~L~l  184 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP-ESLQSITL  184 (426)
T ss_pred             cceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc-ccCcEEEe
Confidence            666666665543   3333      3555655432211   111111  1468888888776655444332 24677777


Q ss_pred             cCCc
Q psy3567         199 NKNQ  202 (277)
Q Consensus       199 ~~n~  202 (277)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            6653

>KOG2120|consensus

Probab=98.29  E-value=1.7e-08  Score=82.68  Aligned_cols=170  Identities=14%  Similarity=0.151  Sum_probs=87.8

Q ss_pred             ccCEEEeecCCCC--cCChhHHHhhccccEEEccCCCCCc-CCccccccCCCcEEeccCC-cCccc--CccccCcccCce
Q psy3567          54 KTGVINLSHQGFK--EFPDEMNELKAVLRTLDISQNKISK-FPLDLASYQLLKSLTFDQN-KIESL--PKDIGTLEKLEN  127 (277)
Q Consensus        54 ~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~l~~~-~i~~~--~~~~~~l~~L~~  127 (277)
                      .++.+||++..|+  .+-.-+.. +.+|+.|.+.++++.+ +...+++-..|+.++++.+ .++..  .--+..+..|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~-C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQ-CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHH-HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4667777777666  22222223 3677777777776652 3334566667777777765 34432  113455666777


Q ss_pred             eecccccccc--cchhhhcC-CCCCEEEccCCCCc----cCccccCCCCCCCEEEccCC-CCc-ccCchhccce-eeEEE
Q psy3567         128 VSGNCNLIKE--LPLSFSKL-HNLKHLSLSQNQLN----KFPTVLFNLQHLDVLDLSFN-RIE-SIPDGIGKMK-VIEMN  197 (277)
Q Consensus       128 L~l~~n~~~~--l~~~~~~l-~~L~~L~l~~n~l~----~~~~~l~~~~~L~~L~l~~n-~l~-~l~~~~~~~~-l~~L~  197 (277)
                      |+++.+.+..  +.-.+... ++|..|+++++.-.    .+.--...+++|.+||+++| .++ .....+..++ ++++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            7777666552  21122222 35666666665322    11111234667777777666 333 2222333443 56666


Q ss_pred             ccCCccC--cCCcCccCCCCCCEEEcCCC
Q psy3567         198 LNKNQIC--HISPDISECVRLKILRLEEN  224 (277)
Q Consensus       198 l~~n~l~--~l~~~l~~~~~L~~L~l~~n  224 (277)
                      ++.|..-  .--..+...|+|++|+.-|+
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            6555422  11122455566666665443

>KOG1644|consensus

Probab=98.26  E-value=2.5e-06  Score=66.33  Aligned_cols=99  Identities=23%  Similarity=0.318  Sum_probs=45.7

Q ss_pred             CEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc--eeeEEEccCCccCcCCcC--ccCCCCCCEEEcCCC
Q psy3567         149 KHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQICHISPD--ISECVRLKILRLEEN  224 (277)
Q Consensus       149 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~--~l~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n  224 (277)
                      ..+|+++|.+..+ ..+..++.|.+|.+++|.|+.+...+...  .+..|.+.+|.|.++...  +..||.|+.|.+-+|
T Consensus        45 d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   45 DAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             ceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence            3344444443333 12233444444444444444443333222  144444555554444322  455666666666666


Q ss_pred             ccccCccCc--cccCCCCccEEEcCC
Q psy3567         225 CLAINAIPT--CILTSSNVCTLNVEG  248 (277)
Q Consensus       225 ~~~~~~~~~--~~~~~~~L~~l~l~~  248 (277)
                      +++...-..  .+..+|+++.||.++
T Consensus       124 pv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  124 PVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             chhcccCceeEEEEecCcceEeehhh
Confidence            665221111  234556666666554

>KOG2982|consensus

Probab=98.23  E-value=5.1e-07  Score=74.20  Aligned_cols=201  Identities=16%  Similarity=0.181  Sum_probs=131.2

Q ss_pred             hccCccCEEEeecCCCCcCCh--hHHHhhccccEEEccCCCCCcCCccc-cccCCCcEEeccCCcCc--ccCccccCccc
Q psy3567          50 ETAKKTGVINLSHQGFKEFPD--EMNELKAVLRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIE--SLPKDIGTLEK  124 (277)
Q Consensus        50 ~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~-~~l~~L~~L~l~~~~i~--~~~~~~~~l~~  124 (277)
                      ..++.++.+||.+|.|+...+  .+..-+|.|++|+++.|++...-... ....+|+.|.+.++.+.  .....+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            557788999999999995543  22223489999999999887332222 46678999999999876  33456778899


Q ss_pred             Cceeecccccccccc---hhhhcC-CCCCEEEccCCCCccC--ccccC-CCCCCCEEEccCCCCcccCch--hccce-ee
Q psy3567         125 LENVSGNCNLIKELP---LSFSKL-HNLKHLSLSQNQLNKF--PTVLF-NLQHLDVLDLSFNRIESIPDG--IGKMK-VI  194 (277)
Q Consensus       125 L~~L~l~~n~~~~l~---~~~~~l-~~L~~L~l~~n~l~~~--~~~l~-~~~~L~~L~l~~n~l~~l~~~--~~~~~-l~  194 (277)
                      ++++.++.|.+..+-   ...... +.+.++.+..|.....  ...++ .++++..+.+..|.++.....  ....+ +.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            999999999776432   112222 2455666666543311  01122 357788888888877643222  11222 44


Q ss_pred             EEEccCCccCcCCcC--ccCCCCCCEEEcCCCccccCcc----Cc--cccCCCCccEEEcCCCeeee
Q psy3567         195 EMNLNKNQICHISPD--ISECVRLKILRLEENCLAINAI----PT--CILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       195 ~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n~~~~~~~----~~--~~~~~~~L~~l~l~~n~~~~  253 (277)
                      -|.++.|+|.++...  +..++.|+.|.+++|++. ..+    +.  .++++++++.|+  |..++.
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~-d~l~~~err~llIaRL~~v~vLN--GskIss  291 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS-DPLRGGERRFLLIARLTKVQVLN--GSKISS  291 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCccc-ccccCCcceEEEEeeccceEEec--Ccccch
Confidence            678888999877653  788899999999999876 222    21  355677777764  335553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.2e-06  Score=51.63  Aligned_cols=38  Identities=32%  Similarity=0.577  Sum_probs=21.8

Q ss_pred             cccEEEccCCCCCcCCccccccCCCcEEeccCCcCccc
Q psy3567          78 VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL  115 (277)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~  115 (277)
                      +|++|++++|+|+.+|+.+.++++|++|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45666666666666655566666666666666665544

...

>KOG2120|consensus

Probab=98.17  E-value=2e-08  Score=82.31  Aligned_cols=149  Identities=20%  Similarity=0.226  Sum_probs=83.2

Q ss_pred             CCcEEeccCCcCc--ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCC-CCccCc--cccCCCCCCCEE
Q psy3567         101 LLKSLTFDQNKIE--SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQN-QLNKFP--TVLFNLQHLDVL  174 (277)
Q Consensus       101 ~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n-~l~~~~--~~l~~~~~L~~L  174 (277)
                      .++++|+++..|+  .+-.-+..+.+|+.+.+.++.+. .+...+++-..|+.++++.+ .+++..  -.+.+++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4777788777776  23334556777777777777776 35556677777888888765 344322  234567778888


Q ss_pred             EccCCCCc--ccCchhc--cceeeEEEccCCccC----cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567         175 DLSFNRIE--SIPDGIG--KMKVIEMNLNKNQIC----HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV  246 (277)
Q Consensus       175 ~l~~n~l~--~l~~~~~--~~~l~~L~l~~n~l~----~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  246 (277)
                      ++++|.+.  .+.-.+.  ..++..|++++.+-.    .+..-...|++|.+|||++|..-.......+.+++-|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88887664  1111111  113555555554311    222224456666666666654221233334445555555555


Q ss_pred             CCC
Q psy3567         247 EGN  249 (277)
Q Consensus       247 ~~n  249 (277)
                      +.+
T Consensus       346 sRC  348 (419)
T KOG2120|consen  346 SRC  348 (419)
T ss_pred             hhh
Confidence            554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=3e-06  Score=49.86  Aligned_cols=38  Identities=47%  Similarity=0.671  Sum_probs=21.2

Q ss_pred             CCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc
Q psy3567         147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI  184 (277)
Q Consensus       147 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l  184 (277)
                      +|++|++++|++..+|+.++++++|++|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45566666666666555555666666666666655544

...

>KOG3665|consensus

Probab=98.08  E-value=2.1e-06  Score=80.43  Aligned_cols=130  Identities=23%  Similarity=0.300  Sum_probs=91.5

Q ss_pred             cCccCEEEeecCCCC--cCChhHHHhhccccEEEccCCCCC--cCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567          52 AKKTGVINLSHQGFK--EFPDEMNELKAVLRTLDISQNKIS--KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN  127 (277)
Q Consensus        52 ~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~  127 (277)
                      -.+|+.|++++...-  ..|..++..+|.|+.|.+.+-.+.  ++..-..++++|+.||++++.++.+ .++..+++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            357788888886433  667777777888999888877654  2233356788888889999888877 56778888888


Q ss_pred             eecccccccccc--hhhhcCCCCCEEEccCCCCccCcc-------ccCCCCCCCEEEccCCCCc
Q psy3567         128 VSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNKFPT-------VLFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       128 L~l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~~~~-------~l~~~~~L~~L~l~~n~l~  182 (277)
                      |.+.+-.+..-.  ..+..+++|+.||+++......+.       .-..++.|+.||.+++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            887766665322  346778888888888875553321       1124778888888776665

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.03  E-value=3.4e-05  Score=67.38  Aligned_cols=129  Identities=18%  Similarity=0.239  Sum_probs=87.0

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCC-cCcccCccccCcccCceeecccc-cccccchhhhcCCCCCEEEcc
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQN-KIESLPKDIGTLEKLENVSGNCN-LIKELPLSFSKLHNLKHLSLS  154 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~  154 (277)
                      .+++.|++++|.+..+|.   -..+|+.|.++++ .++.+|..+  ..+|++|.+++| .+..+|.      .|+.|++.
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~  120 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK  120 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence            889999999999988882   2246999999885 556666655  357999999877 5555553      47777777


Q ss_pred             CCCCc---cCccccCCCCCCCEEEccCCC-Cc--ccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCc
Q psy3567         155 QNQLN---KFPTVLFNLQHLDVLDLSFNR-IE--SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENC  225 (277)
Q Consensus       155 ~n~l~---~~~~~l~~~~~L~~L~l~~n~-l~--~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~  225 (277)
                      .+...   .+|.      +|+.|.+..+. ..  .+|. .....|++|++.+|....+|..+.  .+|+.|.++.+.
T Consensus       121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCcccccCcc------hHhheecccccccccccccc-ccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence            66543   3443      45666664332 11  2221 111258999999998777776554  589999998763

>KOG3665|consensus

Probab=97.83  E-value=3.5e-06  Score=78.98  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CCCcEEeccCCcCc--ccCcccc-CcccCceeeccccccc--ccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEE
Q psy3567         100 QLLKSLTFDQNKIE--SLPKDIG-TLEKLENVSGNCNLIK--ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL  174 (277)
Q Consensus       100 ~~L~~L~l~~~~i~--~~~~~~~-~l~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L  174 (277)
                      .+|++|++++...-  ..+..++ .+|+|+.|.+.+-.+.  ++......+++|..||+++++++.+ .+++.+++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            45666666654322  1222222 3566666665554443  2223345566666666666666655 455566666666


Q ss_pred             EccCCCCcccCch--hccce-eeEEEccCCccCcCC-------cCccCCCCCCEEEcCCCccccCccCccccCCCCccEE
Q psy3567         175 DLSFNRIESIPDG--IGKMK-VIEMNLNKNQICHIS-------PDISECVRLKILRLEENCLAINAIPTCILTSSNVCTL  244 (277)
Q Consensus       175 ~l~~n~l~~l~~~--~~~~~-l~~L~l~~n~l~~l~-------~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  244 (277)
                      .+.+-.+..-...  ++.++ |+.||++......-+       ++-..+|.|+.||.|+..+....+...+...++|+++
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            6665555432221  23332 555666554433211       1223367777788777766622222223334555544


Q ss_pred             E
Q psy3567         245 N  245 (277)
Q Consensus       245 ~  245 (277)
                      .
T Consensus       281 ~  281 (699)
T KOG3665|consen  281 A  281 (699)
T ss_pred             h
Confidence            4

>KOG2123|consensus

Probab=97.11  E-value=2.1e-05  Score=64.37  Aligned_cols=106  Identities=23%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             CCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcC--ccCCCCCCEEEcCC
Q psy3567         146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD--ISECVRLKILRLEE  223 (277)
Q Consensus       146 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~  223 (277)
                      .+.+.|++++|.++.+ .....++.|+.|.|+-|.|+.+......-+|++|+|..|.|..+...  +.++|+|+.|.|..
T Consensus        19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            3444555555555544 12224555666666666665554322222366666666666655543  56778888888888


Q ss_pred             CccccCccCc-----cccCCCCccEEEcCCCeeeecc
Q psy3567         224 NCLAINAIPT-----CILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       224 n~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      |+-- +.-+.     .+.-+|+|++||  +-.++.++
T Consensus        98 NPCc-~~ag~nYR~~VLR~LPnLkKLD--nv~VteeE  131 (388)
T KOG2123|consen   98 NPCC-GEAGQNYRRKVLRVLPNLKKLD--NVPVTEEE  131 (388)
T ss_pred             CCcc-cccchhHHHHHHHHcccchhcc--CccccHHH
Confidence            8765 33332     244567777763  33444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.06  E-value=0.0012  Score=48.32  Aligned_cols=103  Identities=20%  Similarity=0.343  Sum_probs=47.9

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccC
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKL  125 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L  125 (277)
                      .|..+++++.+.+.. .+..+++..+..+.+++.+.+.++ +..++. .|.+++.++.+.+.+ .+..++. .+..+.++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            466666777777664 466666666666556777777663 555544 366666677777754 4443432 45556666


Q ss_pred             ceeecccccccccch-hhhcCCCCCEEEccC
Q psy3567         126 ENVSGNCNLIKELPL-SFSKLHNLKHLSLSQ  155 (277)
Q Consensus       126 ~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~  155 (277)
                      +.+.+..+ +..++. .|... +++.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            66666443 344432 34444 566665544

>KOG2123|consensus

Probab=96.93  E-value=6.4e-05  Score=61.60  Aligned_cols=79  Identities=28%  Similarity=0.290  Sum_probs=40.4

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc--cccCcccCceeecc
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK--DIGTLEKLENVSGN  131 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~  131 (277)
                      +.++|++.||.+..+.  +..-++.|++|.|+-|.|+.+.+ +..+.+|++|+|..|.|..+.+  -+.++++|+.|.+.
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            4455555555555443  12222555555555555554432 4455555555555555554432  34555555555555


Q ss_pred             cccc
Q psy3567         132 CNLI  135 (277)
Q Consensus       132 ~n~~  135 (277)
                      .|+.
T Consensus        97 ENPC  100 (388)
T KOG2123|consen   97 ENPC  100 (388)
T ss_pred             cCCc
Confidence            5543

>KOG2739|consensus

Probab=96.55  E-value=0.0016  Score=52.97  Aligned_cols=82  Identities=27%  Similarity=0.264  Sum_probs=37.9

Q ss_pred             CCCCCEEEccCCCCccCccccCCCCCCCEEEccCC--CCc-ccCchhcc-ceeeEEEccCCccCcCCcC--ccCCCCCCE
Q psy3567         145 LHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN--RIE-SIPDGIGK-MKVIEMNLNKNQICHISPD--ISECVRLKI  218 (277)
Q Consensus       145 l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n--~l~-~l~~~~~~-~~l~~L~l~~n~l~~l~~~--l~~~~~L~~  218 (277)
                      ...|+.+++.+..++++. .+-.+++|+.|.++.|  ++. .++-..-. ..++++.++.|++..+...  +....+|..
T Consensus        42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            344444444444444331 2234556666666666  322 22221111 2355566666655532221  344455556


Q ss_pred             EEcCCCccc
Q psy3567         219 LRLEENCLA  227 (277)
Q Consensus       219 L~l~~n~~~  227 (277)
                      |++..|..+
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            665555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.53  E-value=0.009  Score=43.64  Aligned_cols=12  Identities=33%  Similarity=0.586  Sum_probs=3.8

Q ss_pred             ccccCCCcEEec
Q psy3567          96 LASYQLLKSLTF  107 (277)
Q Consensus        96 ~~~l~~L~~L~l  107 (277)
                      |.++.+++.+.+
T Consensus        31 F~~~~~l~~i~~   42 (129)
T PF13306_consen   31 FSNCTSLKSINF   42 (129)
T ss_dssp             TTT-TT-SEEEE
T ss_pred             cccccccccccc
Confidence            333333333333

>KOG2739|consensus

Probab=96.52  E-value=0.00093  Score=54.27  Aligned_cols=105  Identities=22%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCC--CCC-cCCccccccCCCcEEeccCCcCccc--CccccCcc
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN--KIS-KFPLDLASYQLLKSLTFDQNKIESL--PKDIGTLE  123 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~--~i~-~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~l~  123 (277)
                      ...+..+..+++.+..++.+.. +-.+ ++|++|.++.|  ++. .++.....+++|+++.+++|+|..+  -..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~-~P~L-p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN-FPKL-PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeeccc-CCCc-chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            3444455555555555553321 1122 56677777666  332 2233334446677777777766542  12344455


Q ss_pred             cCceeecccccccccc----hhhhcCCCCCEEEccC
Q psy3567         124 KLENVSGNCNLIKELP----LSFSKLHNLKHLSLSQ  155 (277)
Q Consensus       124 ~L~~L~l~~n~~~~l~----~~~~~l~~L~~L~l~~  155 (277)
                      +|..|++.+|....+-    ..|.-+++|++|+-.+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            5556666666555432    1244556666655544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0037  Score=30.58  Aligned_cols=14  Identities=36%  Similarity=0.686  Sum_probs=5.5

Q ss_pred             cEEEccCCCCCcCC
Q psy3567          80 RTLDISQNKISKFP   93 (277)
Q Consensus        80 ~~L~l~~~~i~~~~   93 (277)
                      ++|++++|+++.+|
T Consensus         3 ~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    3 EYLDLSGNNLTSIP   16 (22)
T ss_dssp             SEEEETSSEESEEG
T ss_pred             cEEECCCCcCEeCC
Confidence            33444444333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308|consensus

Probab=95.78  E-value=2.9e-05  Score=69.87  Aligned_cols=175  Identities=20%  Similarity=0.276  Sum_probs=87.3

Q ss_pred             ccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCcc-----cCccccCc-ccCceeeccccccc-----ccchhh
Q psy3567          79 LRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIES-----LPKDIGTL-EKLENVSGNCNLIK-----ELPLSF  142 (277)
Q Consensus        79 L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l-~~L~~L~l~~n~~~-----~l~~~~  142 (277)
                      +..+++.+|.+..     +...+...+.|..|++++|.+..     +-..+... ..+++|.+..+.+.     .++..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4445555555442     12223444555556666555541     11112221 33444554444443     123344


Q ss_pred             hcCCCCCEEEccCCCCc-----cCccccC----CCCCCCEEEccCCCCcc-----cCchhcc--ceeeEEEccCCccC--
Q psy3567         143 SKLHNLKHLSLSQNQLN-----KFPTVLF----NLQHLDVLDLSFNRIES-----IPDGIGK--MKVIEMNLNKNQIC--  204 (277)
Q Consensus       143 ~~l~~L~~L~l~~n~l~-----~~~~~l~----~~~~L~~L~l~~n~l~~-----l~~~~~~--~~l~~L~l~~n~l~--  204 (277)
                      .....++.+++..|.+.     .++..+.    ...++++|.+.+|.++.     +...+..  ....++++.+|.+.  
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            44555666666666553     1122222    34566777777776651     1111111  12445677777665  


Q ss_pred             ---cCCcCccCC-CCCCEEEcCCCccccC---ccCccccCCCCccEEEcCCCeeee
Q psy3567         205 ---HISPDISEC-VRLKILRLEENCLAIN---AIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       205 ---~l~~~l~~~-~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                         .+.+.+..+ ..+++++++.|.++..   .+...+..++.++++.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence               233444444 5677777777777622   333445556677777777777664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.30  E-value=0.0078  Score=29.41  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=11.8

Q ss_pred             CCcEEeccCCcCcccCcccc
Q psy3567         101 LLKSLTFDQNKIESLPKDIG  120 (277)
Q Consensus       101 ~L~~L~l~~~~i~~~~~~~~  120 (277)
                      +|++|++++|+++.+|.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35666666666666655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308|consensus

Probab=95.00  E-value=7.5e-05  Score=67.21  Aligned_cols=173  Identities=23%  Similarity=0.300  Sum_probs=101.3

Q ss_pred             cCEEEeecCCCCcCC-hhHHH---hhccccEEEccCCCCCc-----CCcccccc-CCCcEEeccCCcCcc-----cCccc
Q psy3567          55 TGVINLSHQGFKEFP-DEMNE---LKAVLRTLDISQNKISK-----FPLDLASY-QLLKSLTFDQNKIES-----LPKDI  119 (277)
Q Consensus        55 L~~L~l~~~~i~~~~-~~~~~---~~~~L~~L~l~~~~i~~-----~~~~~~~l-~~L~~L~l~~~~i~~-----~~~~~  119 (277)
                      +..+.+.+|.+..-. +.+..   ..+.|..|++++|.+..     +...+... +.+++|++..|.++.     +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777777766221 11111   13667777777777761     11222232 456667777776652     33445


Q ss_pred             cCcccCceeecccccccc-----cchhhh----cCCCCCEEEccCCCCcc-----CccccCCCCC-CCEEEccCCCCccc
Q psy3567         120 GTLEKLENVSGNCNLIKE-----LPLSFS----KLHNLKHLSLSQNQLNK-----FPTVLFNLQH-LDVLDLSFNRIESI  184 (277)
Q Consensus       120 ~~l~~L~~L~l~~n~~~~-----l~~~~~----~l~~L~~L~l~~n~l~~-----~~~~l~~~~~-L~~L~l~~n~l~~l  184 (277)
                      .....++.++++.|.+..     ++..+.    ...++++|.+.+|.++.     +...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            556677777777777642     222233    45677888888877662     1223334444 66678888876622


Q ss_pred             -----Cchhccc--eeeEEEccCCccC-----cCCcCccCCCCCCEEEcCCCccc
Q psy3567         185 -----PDGIGKM--KVIEMNLNKNQIC-----HISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       185 -----~~~~~~~--~l~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                           ...+...  .+++++++.|.|+     .+...+..++.++.+.++.|.++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                 2222222  3677888888887     34555667778888888888776

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.76  E-value=0.019  Score=26.11  Aligned_cols=14  Identities=14%  Similarity=0.337  Sum_probs=4.9

Q ss_pred             cCEEEeecCCCCcC
Q psy3567          55 TGVINLSHQGFKEF   68 (277)
Q Consensus        55 L~~L~l~~~~i~~~   68 (277)
                      |++|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444433

...

>KOG0473|consensus

Probab=94.32  E-value=0.0023  Score=51.37  Aligned_cols=89  Identities=19%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE  126 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~  126 (277)
                      ..+....+.+.||++.+++..+-..+..+ +.+..|+++.|++..+|..+.++..++.++...|..+..|.+++..+.++
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence            56677777888888888877666665555 77778888888888888888888888888888888888888888888888


Q ss_pred             eeeccccccc
Q psy3567         127 NVSGNCNLIK  136 (277)
Q Consensus       127 ~L~l~~n~~~  136 (277)
                      ++++-.+.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            8887777644

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.03  E-value=0.044  Score=27.79  Aligned_cols=21  Identities=14%  Similarity=0.235  Sum_probs=13.3

Q ss_pred             CccCEEEeecCCCCcCChhHH
Q psy3567          53 KKTGVINLSHQGFKEFPDEMN   73 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~   73 (277)
                      ++|+.|++++|+|+.+|+..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.03  E-value=0.044  Score=27.79  Aligned_cols=21  Identities=14%  Similarity=0.235  Sum_probs=13.3

Q ss_pred             CccCEEEeecCCCCcCChhHH
Q psy3567          53 KKTGVINLSHQGFKEFPDEMN   73 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~   73 (277)
                      ++|+.|++++|+|+.+|+..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666666554

>KOG0473|consensus

Probab=93.35  E-value=0.0021  Score=51.57  Aligned_cols=83  Identities=22%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCC
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN  156 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n  156 (277)
                      ...+.||++.|++..+-..|..+..+..++++.|.+..+|+.++....+..++...|.....|.++.+.+.++++++-++
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence            67778888888777776677777888888888888888888888887788888888888888888888888888877776


Q ss_pred             CCc
Q psy3567         157 QLN  159 (277)
Q Consensus       157 ~l~  159 (277)
                      .+.
T Consensus       122 ~~~  124 (326)
T KOG0473|consen  122 EFF  124 (326)
T ss_pred             cch
Confidence            644

>KOG4341|consensus

Probab=92.91  E-value=0.0076  Score=52.35  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=29.3

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCC-CC-cCChhHHHhhccccEEEccCC
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQG-FK-EFPDEMNELKAVLRTLDISQN   87 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~-i~-~~~~~~~~~~~~L~~L~l~~~   87 (277)
                      ..+++|.++|+.--+.-+            +...-..++++..|.+.++. ++ ..-..+.+.+++++++++..|
T Consensus       138 g~lk~LSlrG~r~v~~ss------------lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSS------------LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC  200 (483)
T ss_pred             cccccccccccccCCcch------------hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence            356667666665433321            12334455566655555553 22 111233444455566655553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.57  E-value=0.2  Score=25.27  Aligned_cols=17  Identities=47%  Similarity=0.686  Sum_probs=7.7

Q ss_pred             CCCEEEccCCCCcccCc
Q psy3567         170 HLDVLDLSFNRIESIPD  186 (277)
Q Consensus       170 ~L~~L~l~~n~l~~l~~  186 (277)
                      +|++|++++|.++.+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.57  E-value=0.2  Score=25.27  Aligned_cols=17  Identities=47%  Similarity=0.686  Sum_probs=7.7

Q ss_pred             CCCEEEccCCCCcccCc
Q psy3567         170 HLDVLDLSFNRIESIPD  186 (277)
Q Consensus       170 ~L~~L~l~~n~l~~l~~  186 (277)
                      +|++|++++|.++.+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.68  E-value=0.12  Score=25.60  Aligned_cols=19  Identities=21%  Similarity=0.244  Sum_probs=9.3

Q ss_pred             CCccEEEcCCCeeeecccc
Q psy3567         239 SNVCTLNVEGNLFEMKAFQ  257 (277)
Q Consensus       239 ~~L~~l~l~~n~~~~~~~~  257 (277)
                      ++|++|++++|.++.+.++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4556666666665554443

...

>KOG3864|consensus

Probab=85.82  E-value=0.16  Score=40.13  Aligned_cols=59  Identities=15%  Similarity=0.242  Sum_probs=35.0

Q ss_pred             CCCCCEEEcCCCc-cccCccCccccCCCCccEEEcCCCeeeeccccccccchhhhhhhhhccCCC
Q psy3567         213 CVRLKILRLEENC-LAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLL  276 (277)
Q Consensus       213 ~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~~~~~~~~~~~~~~~~  276 (277)
                      .++|+.|++++|+ |+.+.+ .++.++++|+.|.+.+=    +...........++..+|+|-|+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l----~~v~~~e~~~~~Le~aLP~c~I~  209 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDL----PYVANLELVQRQLEEALPKCDIV  209 (221)
T ss_pred             ccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCc----hhhhchHHHHHHHHHhCccccee
Confidence            3677888888775 664333 56667777777776652    22333444445555556666553

>KOG3864|consensus

Probab=80.38  E-value=0.47  Score=37.54  Aligned_cols=17  Identities=12%  Similarity=0.302  Sum_probs=8.4

Q ss_pred             HhhhccCccCEEEeecC
Q psy3567          47 RHFETAKKTGVINLSHQ   63 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~   63 (277)
                      ..+..++.++.|.+.+|
T Consensus       119 e~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  119 EHLRDLRSIKSLSLANC  135 (221)
T ss_pred             HHHhccchhhhheeccc
Confidence            34444455555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		6e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 32/165 (19%)
Query: 67  EFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT 121
            F +++ +LK       L  LDIS NK+S   + LA    L+SL    N+I  +   +G 
Sbjct: 161 SFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGI 218
Query: 122 LEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
           L  L+ +S N N +K++                          L +L +L  LDL+ N+I
Sbjct: 219 LTNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQI 254
Query: 182 ESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
            ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 255 SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 298

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 32/165 (19%)
Query: 67  EFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT 121
            F +++ +LK       L  LDIS NK+S   + LA    L+SL    N+I  +   +G 
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGI 219
Query: 122 LEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
           L  L+ +S N N +K++                          L +L +L  LDL+ N+I
Sbjct: 220 LTNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQI 255
Query: 182 ESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
            ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 299

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 68  FPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTL 122
           F +++ +LK       L  LDIS NK+S   + LA    L+SL    N+I  +   +G L
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGIL 215
Query: 123 EKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
             L+ +S N N +K++                          L +L +L  LDL+ N+I 
Sbjct: 216 TNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQIS 251
Query: 183 SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 294

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 68  FPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTL 122
           F +++ +LK       L  LDIS NK+S   + LA    L+SL    N+I  +   +G L
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGIL 215
Query: 123 EKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
             L+ +S N N +K++                          L +L +L  LDL+ N+I 
Sbjct: 216 TNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQIS 251
Query: 183 SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 294

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 55  TGVINLSHQGFKEFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
           +G+ +L    F    +++ +LK       L  LDIS NK+S   + LA    L+SL    
Sbjct: 148 SGLTSLQQLSFSS--NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATN 204
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQ 169
           N+I  +   +G L  L+ +S N N +K++                          L +L 
Sbjct: 205 NQISDITP-LGILTNLDELSLNGNQLKDIG------------------------TLASLT 239
Query: 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           +L  LDL+ N+I ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 295

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 55  TGVINLSHQGFKEFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
           +G+ +L    F    +++ +LK       L  LDIS NK+S   + LA    L+SL    
Sbjct: 148 SGLTSLQQLSFSS--NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATN 204
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQ 169
           N+I  +   +G L  L+ +S N N +K++                          L +L 
Sbjct: 205 NQISDITP-LGILTNLDELSLNGNQLKDIG------------------------TLASLT 239
Query: 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           +L  LDL+ N+I ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 295

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 55  TGVINLSHQGFKEFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
           +G+ +L    F    +++ +LK       L  LDIS NK+S   + LA    L+SL    
Sbjct: 148 SGLTSLQQLNFSS--NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATN 204
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQ 169
           N+I  +   +G L  L+ +S N N +K++                          L +L 
Sbjct: 205 NQISDITP-LGILTNLDELSLNGNQLKDIG------------------------TLASLT 239
Query: 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           +L  LDL+ N+I ++    G  K+ E+ L  NQI +ISP ++    L  L L EN L
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 8e-29
 Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 16/206 (7%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            + L      +FPD+   L   L+ + I    + + P  +  +  L++LT  +N + +LP
Sbjct: 85  ALELRSVPLPQFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

Query: 117 KDIGTLEKLE--NVSGNCNLIKELP---------LSFSKLHNLKHLSLSQNQLNKFPTVL 165
             I +L +L   ++   C  + ELP              L NL+ L L    +   P  +
Sbjct: 144 ASIASLNRLRELSIRA-CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202

Query: 166 FNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNL-NKNQICHISPDISECVRLKILRLEE 223
            NLQ+L  L +  + + ++   I  +  + E++L     + +  P       LK L L +
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL-K 261

Query: 224 NCLAINAIPTCILTSSNVCTLNVEGN 249
           +C  +  +P  I   + +  L++ G 
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 1e-27
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 15/207 (7%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF-DQNKIESL 115
            + +   G  E PD M +    L TL +++N +   P  +AS   L+ L+     ++  L
Sbjct: 108 HMTIDAAGLMELPDTMQQFAG-LETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 116 PKDIGTLEKLENVSG---------NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
           P+ + + +      G             I+ LP S + L NLK L +  + L+     + 
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226

Query: 167 NLQHLDVLDLS-FNRIESIPDGIGKMK-VIEMNL-NKNQICHISPDISECVRLKILRLEE 223
           +L  L+ LDL     + + P   G    +  + L + + +  +  DI    +L+ L L  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-R 285

Query: 224 NCLAINAIPTCILTSSNVCTLNVEGNL 250
            C+ ++ +P+ I      C + V  +L
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 4e-23
 Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 15/184 (8%)

Query: 79  LRTLDISQNKISKFP--LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
            +    +   +      L+ A+     +L      +   P     L  L++++ +   + 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS-FNRIESIPDGIGKMKVI- 194
           ELP +  +   L+ L+L++N L   P  + +L  L  L +     +  +P+ +       
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 195 ---------EMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245
                     + L    I  +   I+    LK L++  + L  +A+   I     +  L+
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELD 235

Query: 246 VEGN 249
           + G 
Sbjct: 236 LRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF-DQNKIESLPK 117
            L   G +  P  +  L+  L++L I  + +S     +     L+ L       + + P 
Sbjct: 189 RLEWTGIRSLPASIANLQN-LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 118 DIGTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQN-QLNKFPTVLFNLQHLDVLD 175
             G    L+ +   +C+ +  LPL   +L  L+ L L     L++ P+++  L    ++ 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 176 LSFNRIESIPD 186
           +  +    +  
Sbjct: 308 VPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 12/159 (7%)

Query: 98  SYQLLKSLTF----DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSL 153
            +                +      +   ++  N               +  +N +  + 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYN---ADRNRWHSAWRQANSNNPQIETR 63

Query: 154 SQNQLNKFPTVLFNLQH--LDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDI 210
           +   L     +L +        L+L    +   PD   ++  +  M ++   +  +   +
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123

Query: 211 SECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
            +   L+ L L  N L   A+P  I + + +  L++   
Sbjct: 124 QQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 13/142 (9%), Positives = 38/142 (26%), Gaps = 9/142 (6%)

Query: 112 IESLPKDIGTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170
           + S           EN+       ++        L   +    +            N  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYH---DVLSQWQRHYNADRNRWHSAWRQANSNN 57

Query: 171 LDVLDLSFNRIESIPDGIGKMKV---IEMNLNKNQICHISPDISECVRLKILRLEENCLA 227
             +   +   +++  D +        + + L    +            L+ + ++   L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL- 116

Query: 228 INAIPTCILTSSNVCTLNVEGN 249
              +P  +   + + TL +  N
Sbjct: 117 -MELPDTMQQFAGLETLTLARN 137

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (263), Expect = 6e-26
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 21/175 (12%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
           V+ ++       P+    L      LD   N++S  P   AS   LK L  D N++  LP
Sbjct: 84  VLEITQNALISLPELPASL----EYLDACDNRLSTLPELPAS---LKHLDVDNNQLTMLP 136

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
           +    LE + N   N   +  LP       +L+ LS+  NQL   P +  +L+ LD   +
Sbjct: 137 ELPALLEYI-NADNN--QLTMLP---ELPTSLEVLSVRNNQLTFLPELPESLEALD---V 187

Query: 177 SFNRIESIPDGIGKMK-----VIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           S N +ES+P    +        I     +N+I HI  +I        + LE+N L
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (263), Expect = 7e-26
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 23/221 (10%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
            L+       PD +      +  L+I+QN +   P   AS   L+ L    N++ +LP+ 
Sbjct: 65  QLNRLNLSSLPDNLPPQ---ITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPEL 118

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
             +L+ L +V  N   +  LP   +    L++++   NQL   P +  +L+   VL +  
Sbjct: 119 PASLKHL-DVDNNQ--LTMLPELPA---LLEYINADNNQLTMLPELPTSLE---VLSVRN 169

Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK----ILRLEENCLAINAIPTC 234
           N++  +P+    ++   ++++ N +  +          +      R  EN +    IP  
Sbjct: 170 NQLTFLPELPESLE--ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT--HIPEN 225

Query: 235 ILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGL 275
           IL+    CT+ +E N    +  + L       D    R   
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 34/193 (17%)

Query: 81  TLDISQNKISKFPLDLASY----QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
           + +   N IS    D  S     +       ++N+  SL K+   + +   +  N   + 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNLS 72

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV-----------------LDLSFN 179
            LP +      +  L ++QN L   P +  +L++LD                  LD+  N
Sbjct: 73  SLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNN 130

Query: 180 RIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSS 239
           ++  +P+    ++ I  N + NQ+  +    +    L++L +  N L    +P       
Sbjct: 131 QLTMLPELPALLEYI--NADNNQLTMLPELPT---SLEVLSVRNNQL--TFLPELP---E 180

Query: 240 NVCTLNVEGNLFE 252
           ++  L+V  NL E
Sbjct: 181 SLEALDVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 25/185 (13%)

Query: 59  NLSHQGFKEFPDEM----------NELKAV------LRTLDISQNKISKFPLDLASYQLL 102
           ++ +      P+            N+L  +      L  L +  N+++  P    S   L
Sbjct: 126 DVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPES---L 182

Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNL----IKELPLSFSKLHNLKHLSLSQNQL 158
           ++L    N +ESLP         E            I  +P +   L     + L  N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
           +       +L                    G+   +   L          +    V    
Sbjct: 243 SSRIR--ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

Query: 219 LRLEE 223
              E 
Sbjct: 301 HAFEH 305

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDVLDLSFNRIESIPDGIGKMKV 193
           + L  +   +L       N ++      F      +   +   + N   S+       + 
Sbjct: 3   IMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 194 IEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
            E+ LN+  +  +  ++    ++ +L + +N L   ++P      +++  L+   N   
Sbjct: 62  SELQLNRLNLSSLPDNL--PPQITVLEITQNALI--SLPELP---ASLEYLDACDNRLS 113

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 5e-24
 Identities = 55/245 (22%), Positives = 89/245 (36%), Gaps = 51/245 (20%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-----LDLASYQL---------L 102
            + +S       P     L   L         +   P     L +   QL         L
Sbjct: 85  TLEVSGNQLTSLPVLPPGLLE-LSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGL 143

Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP 162
           + L+   N++ SLP     L KL     N   +  LP+  S    L+ LS+S NQL   P
Sbjct: 144 QELSVSDNQLASLPALPSELCKL-WAYNNQ--LTSLPMLPS---GLQELSVSDNQLASLP 197

Query: 163 TVLFNLQHLDV-----------------LDLSFNRIESIPDGIGKMKVIEMNLNKNQICH 205
           T+   L  L                   L +S NR+ S+P    ++K  E+ ++ N++  
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK--ELMVSGNRLTS 255

Query: 206 ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE------MKAFQQL 259
           +    S    L  L +  N L    +P  ++  S+  T+N+EGN         ++     
Sbjct: 256 LPMLPS---GLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 260 DGYNN 264
            GY+ 
Sbjct: 311 PGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 2e-21
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 44/234 (18%)

Query: 57  VINLSHQGFKEFPDEM-----------NELKAV------LRTLDISQNKISKFPLDLASY 99
           V+N+   G    PD +           N L ++      LRTL++S N+++  P+     
Sbjct: 44  VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPG- 102

Query: 100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
             L  L+   N +  LP     L KL  + G  N +  LP+       L+ LS+S NQL 
Sbjct: 103 --LLELSIFSNPLTHLPALPSGLCKL-WIFG--NQLTSLPVLPP---GLQELSVSDNQLA 154

Query: 160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
             P +   L  L   +   N++ S+P     ++  E++++ NQ+  +    S    L  L
Sbjct: 155 SLPALPSELCKLWAYN---NQLTSLPMLPSGLQ--ELSVSDNQLASLPTLPS---ELYKL 206

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLF-----EMKAFQQLDGYNNYMDS 268
               N L   ++P      S +  L V GN            ++L    N + S
Sbjct: 207 WAYNNRL--TSLPALP---SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 255

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 2e-20
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 26/191 (13%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
              L++ ++ ++  P  L     + +L    N + SLP     L  L  VSGN   +  L
Sbjct: 42  NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTL-EVSGNQ--LTSL 96

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
           P+    L  L   S     L   P+    L     L +  N++ S+P     ++  E+++
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPS---GLCK---LWIFGNQLTSLPVLPPGLQ--ELSV 148

Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF-----EM 253
           + NQ+  +    S    L  L    N L   ++P      S +  L+V  N         
Sbjct: 149 SDNQLASLPALPS---ELCKLWAYNNQL--TSLPMLP---SGLQELSVSDNQLASLPTLP 200

Query: 254 KAFQQLDGYNN 264
               +L  YNN
Sbjct: 201 SELYKLWAYNN 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 4e-18
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 13/192 (6%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
           ++S       P   +EL      L    N+++  P   +    LK L    N++ SLP  
Sbjct: 187 SVSDNQLASLPTLPSEL----YKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVL 239

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
              L++L  VSGN   +  LP+       L  LS+ +NQL + P  L +L     ++L  
Sbjct: 240 PSELKEL-MVSGN--RLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293

Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
           N +        +        +   I       S     + L L      + A       +
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 239 SNVCTLNVEGNL 250
                   E N 
Sbjct: 354 DRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 4e-11
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLN 199
           +     +    L++ ++ L   P  L    H+  L +  N + S+P    +++ +   ++
Sbjct: 34  MRACLNNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL--EVS 89

Query: 200 KNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF-----EMK 254
            NQ+  +       + L I       L   A+P+       +C L + GN          
Sbjct: 90  GNQLTSLPVLPPGLLELSIFSNPLTHLP--ALPS------GLCKLWIFGNQLTSLPVLPP 141

Query: 255 AFQQLDGYNNYMDS 268
             Q+L   +N + S
Sbjct: 142 GLQELSVSDNQLAS 155

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 25/221 (11%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIES 114
            + L +   +E P++       +  L  S NK+   P    +  +  + S+ F  NKI S
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 115 LPKDIGT------LEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFP----- 162
             ++I              V+ + N I++ P   F+    +  + LS N +   P     
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 163 ---TVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIE-MNLNKNQICHISPDISECVRL 216
                  N   L  +DL FN++ S+ D      +  +  M+++ N             +L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778

Query: 217 KILRLEENCLAIN-----AIPTCILTSSNVCTLNVEGNLFE 252
           K   +     A         PT I T  ++  L +  N   
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 22/210 (10%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
           I             +  L   L+ +  + +  +   + +              + E+   
Sbjct: 430 IGNLTNRITFISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDY---AKQYENEEL 485

Query: 118 DIGTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQL----------NKFPTVLF 166
               L+ L +V   NC  + +LP     L  L+ L+++ N+            +      
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 167 NLQHLDVLDLSFNRIESIPD--GIGKMKVIE-MNLNKNQICHISPDISECVRLKILRLEE 223
               + +  + +N +E  P    + KM  +  ++   N++ H+       V+L  L+L+ 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDY 604

Query: 224 NCLAINAIPTCILT-SSNVCTLNVEGNLFE 252
           N   I  IP      +  V  L    N  +
Sbjct: 605 N--QIEEIPEDFCAFTDQVEGLGFSHNKLK 632

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESL 115
                  +    D+ +     ++   +  N + +FP   +  ++  L  L    NK+  L
Sbjct: 530 AAQLKADWTRLADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

Query: 116 PKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF--NLQHLD 172
               GT  KL ++  + N I+E+P    +    ++ L  S N+L   P +    ++  + 
Sbjct: 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 173 VLDLSFNRIESIPDGIGK-------MKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
            +D S+N+I S    I         +    + L+ N+I     ++ +    +  + L  N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 225 CL------AINAIPTCILTSSNVCTLNVEGN 249
            +      ++         +  + T+++  N
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 26/194 (13%)

Query: 57  VINLSHQGFKEFPDEMNELKAV-----LRTLDISQNKISKFPLDLASY-QLLKSLTFDQN 110
            ++ S+         ++            T+ +S N+I KFP +L +    + ++    N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 111 KIESLPKD--------IGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNK 160
            + S+P++              L  +    N +  L      + L  L ++ +S N  + 
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 161 FPTVLFNLQHLDVLDLSFNRI-------ESIPDGIGKMKVIEM-NLNKNQICHISPDISE 212
           FPT   N   L    +   R           P GI     +    +  N I  +   ++ 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827

Query: 213 CVRLKILRLEENCL 226
             +L IL + +N  
Sbjct: 828 --QLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.1 bits (213), Expect = 4e-19
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 20/169 (11%)

Query: 57  VINLSHQGFKEFPDEMNELKAV-------LRTLDISQNKISKFPLDLASYQL--LKSLTF 107
            I LS+      P+   + K         L T+D+  NK++    D  +  L  L ++  
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760

Query: 108 DQNKIESLPKDIGTLEKLENVS-------GNCNLIKELPLSFSKLHNLKHLSLSQNQLNK 160
             N   S P       +L+              ++++ P   +   +L  L +  N + K
Sbjct: 761 SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

Query: 161 FPTVLFNLQHLDVLDLSFNRIESIPDG--IGKMKVIEMNLNKNQICHIS 207
               L     L +LD++ N   SI        ++     L  ++   I 
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 21/206 (10%), Positives = 59/206 (28%), Gaps = 14/206 (6%)

Query: 57  VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ------ 109
            ++L+  G K   PD + +L   L+ L    +  +         +L   ++ ++      
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 110 ---NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
                     + +   + L++       +K +            +    N++      + 
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 167 NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
            L  L ++  + +        +           + +        S    L  + L     
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPN 503

Query: 227 AINAIPTCILTSSNVCTLNVEGNLFE 252
            +  +P  +     + +LN+  N   
Sbjct: 504 -MTQLPDFLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 3/138 (2%)

Query: 96  LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLS 154
            A   + ++L     +  S   +        N +   ++  + P +       +  LSL+
Sbjct: 272 KALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLA 331

Query: 155 QNQL-NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISEC 213
                 + P  +  L  L VL    +         G  ++   ++++ +   I     + 
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP-DMSEERKHRIRMHYKKM 390

Query: 214 VRLKILRLEENCLAINAI 231
                 RL  + L  +AI
Sbjct: 391 FLDYDQRLNLSDLLQDAI 408

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 4e-22
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 13/197 (6%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIKE 137
           + TL  + N IS+        Q  K++    NKI  L     G   +++ +    N I  
Sbjct: 101 IETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 138 LPLS--FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
           +  +   +    L+HL+L  N +      +     L  LDLS N++  +         + 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVT 217

Query: 196 M-NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTL------NVEG 248
             +L  N++  I   +     L+   L  N      +      +  V T+       + G
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 249 NLFEMKAFQQLDGYNNY 265
              E      L  Y  Y
Sbjct: 278 QNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 39/239 (16%), Positives = 87/239 (36%), Gaps = 36/239 (15%)

Query: 49  FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTF 107
            +   +  +  ++    K+    + +    ++ LD+S N +S+     LA +  L+ L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF- 166
             N +     D+ +L  L  +  N N ++EL        +++ L  + N +++       
Sbjct: 66  SSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRGQ 120

Query: 167 NLQHLD---------------------VLDLSFNRIESIPDG--IGKMKVIEM-NLNKNQ 202
             +++                       LDL  N I+++           +E  NL  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 203 ICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM--KAFQQL 259
           I  +   +    +LK L L  N   +  +     +++ V  +++  N   +  KA +  
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 5/153 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
           ++ LD+  N+I        +     L+ L    N I  +   +    KL+ +  + N + 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLA 204

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
            +   F     +  +SL  N+L      L   Q+L+  DL  N            K   +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 197 -NLNKNQICHISPDISE-CVRLKILRLEENCLA 227
             + K  +  ++    E C    +      C  
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L++  N I         +  LK+L    NK+  +  +  +   +  +S   N +  +
Sbjct: 171 LEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             +     NL+H  L  N  +      F  ++  V  ++   ++ +     +   +    
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 199 NKNQICHISPDISECVRLKILRLEENCLA 227
           +    C    D+      +++ L  +   
Sbjct: 290 HYGAYC--CEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHL 171
           ++ +      + +      + +K+   S      N+K L LS N L++           L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
           ++L+LS N +    D      +  ++LN N +     ++     ++ L    N   I+ +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNN--ISRV 114

Query: 232 PTCILTS 238
                  
Sbjct: 115 SCSRGQG 121

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 6e-21
 Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 11/174 (6%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           LRTLD++ N + +      S   +++L    N I  +       +  +N+    N I  L
Sbjct: 82  LRTLDLNNNYVQELL-VGPS---IETLHAANNNISRVS--CSRGQGKKNIYLANNKITML 135

Query: 139 P-LSFSKLHNLKHLSLSQNQLNKFPTVLF--NLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
             L       +++L L  N+++         +   L+ L+L +N I  +   +   K+  
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

Query: 196 MNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
           ++L+ N++  + P+      +  + L  N   +  I   +  S N+   ++ GN
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGN 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.0 bits (187), Expect = 8e-16
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 12/183 (6%)

Query: 49  FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTF 107
            +   +  +  ++    K+    + +    ++ LD+S N +S+    DLA +  L+ L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFN 167
             N +     D+ +L  L  +  N N ++EL        +++ L  + N +++       
Sbjct: 66  SSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG- 119

Query: 168 LQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD--ISECVRLKILRLEE 223
            Q    + L+ N+I  + D   G   +V  ++L  N+I  ++     +    L+ L L+ 
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 224 NCL 226
           N +
Sbjct: 179 NFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 10/178 (5%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            +NL +    +   ++   K  L+TLD+S NK++    +  S   +  ++   NK+  + 
Sbjct: 173 HLNLQYNFIYDVKGQVVFAK--LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLD 175
           K +   + LE+     N      L      N +  ++++  + K             +  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 176 LSFNRIESIPDGI-------GKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
                 E +P           + +   ++   ++   +  +     R + +   +   
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHL 171
           ++ +      + +      + +K+   S      N+K L LS N L++           L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
           ++L+LS N +    D      +  ++LN N +     ++     ++ L    N   I+ +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNN--ISRV 114

Query: 232 PTCILTS 238
                  
Sbjct: 115 SCSRGQG 121

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG-IGKMK 192
           I E+  +    +  K   ++ + L +    L  +  ++  LDLS N +  I    +    
Sbjct: 2   IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 193 VIEM-NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
            +E+ NL+ N +     D+     L+ L L  N +        +L   ++ TL+   N
Sbjct: 59  KLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANN 109

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 6e-20
 Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 14/183 (7%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS----GNCN 133
           L  L + +  ++  P + L+    L  L      I ++     + ++L  +      +  
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWP 211

Query: 134 LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GK 190
            +  +  +     NL  LS++   L   P +   +L +L  L+LS+N I +I   +    
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 191 MKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEG 248
           +++ E+ L   Q+  + P        L++L +  N   +  +   +  S  N+ TL ++ 
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN--QLTTLEESVFHSVGNLETLILDS 329

Query: 249 NLF 251
           N  
Sbjct: 330 NPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 32/182 (17%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL 115
            +    + F   P+ +       R LD+ +N+I     D  AS+  L+ L  ++N + ++
Sbjct: 15  AVLCHRKRFVAVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 116 PKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVL 174
                                  P +F+ L NL+ L L  N+L   P  +F  L +L  L
Sbjct: 72  E----------------------PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 175 DLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAI 231
           D+S N+I  + D +      +  + +  N + +IS    S    L+ L LE+    + +I
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSI 167

Query: 232 PT 233
           PT
Sbjct: 168 PT 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQI 203
             + L L +N++       F +  HL+ L+L+ N + ++  G       +  + L  N++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 204 CHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLF---EMKAFQQ 258
             I   + +    L  L + EN   I  +   +     N+ +L V  N       +AF  
Sbjct: 93  KLIPLGVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 259 L 259
           L
Sbjct: 151 L 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 8e-20
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L   ++S N +S   + +A    ++ L    N I  +        +L  +    N + + 
Sbjct: 188 LFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT 241

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKVIEM- 196
                    L  + LS N+L K     F  +Q L+ L +S NR+ ++      +  +++ 
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
           +L+ N + H+  +  +  RL+ L L+ N  +I  +         +  L +  N
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHN--SIVTLKLSTH--HTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 28/205 (13%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
            + +    + + K P   L S++ ++ L  +  +IE +          ++ +    N I+
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 137 ELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MK 192
            LP   F  +  L  L L +N L+  P  +F N   L  L +S N +E I D   +    
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 193 VIEMNLNKNQICHISPD-----------------ISECVRLKILRLEENCLAINAIPTCI 235
           +  + L+ N++ H+                    ++  + ++ L    N  +IN +   +
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN--SINVVRGPV 224

Query: 236 LTSSNVCTLNVEGN-LFEMKAFQQL 259
                +  L ++ N L +       
Sbjct: 225 N--VELTILKLQHNNLTDTAWLLNY 247

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 14/194 (7%)

Query: 85  SQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELP-LSF 142
            Q +   F  +  +    K +TF  + +  LP  +  +  ++E ++ N   I+E+   +F
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 89

Query: 143 SKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLN 199
           +  H ++ L +  N +   P  +F N+  L VL L  N + S+P GI     K+  ++++
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149

Query: 200 KNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN----LFEMK 254
            N +  I  D       L+ L+L  N   +  +   ++   ++   NV  N    L    
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSN--RLTHVDLSLIP--SLFHANVSYNLLSTLAIPI 205

Query: 255 AFQQLDGYNNYMDS 268
           A ++LD  +N ++ 
Sbjct: 206 AVEELDASHNSINV 219

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 10/130 (7%)

Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
           +  +         + +     + +       L +  ++    + +  +P  +     +V 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 195 EMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFE 252
            +NLN  QI  I     +    ++ L +  N  AI  +P  +  +   +  L +E N   
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 253 M---KAFQQL 259
                 F   
Sbjct: 131 SLPRGIFHNT 140

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 9e-20
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  L ++ NK++     L + + L  L  D+NKI+ L   +  L+KL+++S   N I ++
Sbjct: 67  VTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI 124

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
                 L  L+ L L  N++    TVL  L  LD L L  N+I  I    G  K+  + L
Sbjct: 125 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182

Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAI 231
           +KN I  +   ++    L +L L         I
Sbjct: 183 SKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 2e-18
 Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
               ++ +  ++           +  +  + + I+S+ + I  L  +  +  N N + ++
Sbjct: 23  TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 80

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L NL  L L +N++    + L +L+ L  L L  N I  I   +   ++  + L
Sbjct: 81  K-PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 138

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
             N+I  I+  +S   +L  L LE+N
Sbjct: 139 GNNKITDITV-LSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  +  + + I      +     +  L  + NK+  + K +  L+ L  +  + N IK+L
Sbjct: 45  IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL 102

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             S   L  LK LSL  N ++     L +L  L+ L L  N+I  I       K+  ++L
Sbjct: 103 S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 160

Query: 199 NKNQICHISPDISECVRLKILRLEENCLA-INAIP-----TCILTSSNVCTLNVEGNLFE 252
             NQI  I P ++   +L+ L L +N ++ + A+        +   S  C      +   
Sbjct: 161 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 253 MKAFQQLDGYNNYMDSELQRS 273
           +     +   +  + +    S
Sbjct: 220 LVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 125 LENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI 184
           +         IK++             +L +  +    T    L  +D +  + + I+S+
Sbjct: 1   MGETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 185 PDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILRLEEN 224
             GI  +  +    LN N++  I P ++    L  L L+EN
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 23/209 (11%)

Query: 65  FKEFPDEMNELKAVLRTLDISQ-NKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLE 123
           +K    + + LK  L  +++     ++K P  L +   ++ +    N+  S  +     +
Sbjct: 238 YKTEDLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 124 KLENVSGNCNLIK-----------ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
            L +      +              +  S  K+  L  L    NQL        +   L 
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356

Query: 173 VLDLSFNRIESIPDGIGKM--KVIEMNLNKNQICHISP--DISECVRLKILRLEENCL-- 226
            L+L++N+I  IP        +V  ++   N++ +I    D      +  +    N +  
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 227 ----AINAIPTCILTSSNVCTLNVEGNLF 251
                 + +        NV ++N+  N  
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 22/186 (11%)

Query: 60  LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD 118
           +  + F        +    + ++++S N+ISKFP +  ++   L S+    N +  +PK+
Sbjct: 417 VDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 119 --------IGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNKFPTVLFNL 168
                         L ++    N + +L      + L  L  + LS N  +KFPT   N 
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535

Query: 169 QHLDVLDLSFNRIES-------IPDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILR 220
             L    +   R           P+GI     +    +  N I  ++  I+    + +L 
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP--NISVLD 593

Query: 221 LEENCL 226
           +++N  
Sbjct: 594 IKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 35/196 (17%)

Query: 79  LRTLDISQNKISKF-PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE--NVSGN---- 131
           L    I+ +   K              +    N I  + K +  L KL    +  +    
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 132 --------------CNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDL 176
                             K   L +  L +L  + +       K PT L  L  + ++++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 177 SFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCIL 236
           + NR  S                         D     +++I+ +  N L    + T + 
Sbjct: 281 ACNRGISGEQLKD-------------DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 237 TSSNVCTLNVEGNLFE 252
               +  L    N  E
Sbjct: 328 KMKKLGMLECLYNQLE 343

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 34/160 (21%)

Query: 60  LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPK 117
           +     K+  +        L ++D+  NK++K   D  +  L  L  +    N     P 
Sbjct: 472 IPKNSLKDENENFKNTYL-LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 118 DIGTLEKLE--------NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF-PTVLFNL 168
                  L+        +  GN   ++E P   +   +L  L +  N + K    +  N+
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI 589

Query: 169 QHLDV---------------------LDLSFNRIESIPDG 187
             LD+                       L +++ + I   
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 21/206 (10%), Positives = 55/206 (26%), Gaps = 18/206 (8%)

Query: 58  INLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFP----------LDLASYQLLKSLT 106
           ++L   G     PD + +L   L  L +  +                      +    + 
Sbjct: 86  LSLEGFGASGRVPDAIGQLTE-LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 107 FDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
           + +  ++  P++    + +++   +    K +  S         +    N +      + 
Sbjct: 145 YQKTFVDYDPRED-FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM 203

Query: 167 NLQHLDVLDLSFNRIE-SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENC 225
            L  L    +  +           + +  E      Q             L  + +    
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYA---QQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 226 LAINAIPTCILTSSNVCTLNVEGNLF 251
             +  +PT +     +  +NV  N  
Sbjct: 261 N-LTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 19/151 (12%)

Query: 132 CNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-----SIP 185
                +  +S +    +  LSL     + + P  +  L  L+VL L  +  +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 186 DGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAIN----AIPTCILTSSNV 241
            GI      E    K ++ +    +    R     L ++C+  +    +I      +   
Sbjct: 127 KGISANMSDE-QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 242 CTLNVEGN--------LFEMKAFQQLDGYNN 264
             +    N        +  +   +Q    N+
Sbjct: 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  L ++  K++     +     L+ L  + N+I  +   +  L KL N+    N I ++
Sbjct: 46  ITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI 103

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMN 197
             +   L NL+ L L+++ ++     L NL  +  L+L  N   S    +  M  +  + 
Sbjct: 104 S-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161

Query: 198 LNKNQICHISPDISECVRLKILRLEEN 224
           + ++++  ++P I+    L  L L  N
Sbjct: 162 VTESKVKDVTP-IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.8 bits (203), Expect = 4e-18
 Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 6/149 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L+++ N+I+     L++   L +L    NKI  +   +  L  L  +  N + I ++
Sbjct: 68  LEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI 125

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-N 197
               + L  +  L+L  N      + L N+  L+ L ++ ++++ +   I  +  +   +
Sbjct: 126 S-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLS 183

Query: 198 LNKNQICHISPDISECVRLKILRLEENCL 226
           LN NQI  ISP ++    L       N +
Sbjct: 184 LNYNQIEDISP-LASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 5e-17
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
                + +  ++   +     + +  L     K+ S+   I  L  LE ++ N N I ++
Sbjct: 24  GIRAVLQKASVTD-VVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI 81

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               S L  L +L +  N++      L NL +L  L L+ + I  I       K+  +NL
Sbjct: 82  S-PLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNL 139

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
             N        +S    L  L + E+
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP----------LDLASYQL------- 101
           NL           ++ +   L  L ++++K+              L L   Q+       
Sbjct: 138 NLGANHNLSDLSPLSNMTG-LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA 196

Query: 102 ----LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ 157
               L   T   N+I  +   +  + +L ++    N I +L    + L  L  L +  NQ
Sbjct: 197 SLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQ 254

Query: 158 LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISECVR 215
           ++     + +L  L +L++  N+I  I   +  +  +  + LN NQ+ +   + I     
Sbjct: 255 ISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 216 LKILRLEENCL 226
           L  L L +N +
Sbjct: 313 LTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
             +L      I  +  D   L +          + ++  +  +L ++  L ++  ++   
Sbjct: 2   AATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI 59

Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRL 221
              +  L +L+ L+L+ N+I  I      +K+  + +  N+I  IS  +     L+ L L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYL 117

Query: 222 EENCL 226
            E+ +
Sbjct: 118 NEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L+I  N+IS     +     LK L    N+I  +   +  L +L ++  N N +   
Sbjct: 245 LTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNE 302

Query: 139 PLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
            +     L NL  L LSQN +      L +L  +D  D +   I+
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKE 137
           L+ L++  N+IS     L +   L SL  + N++ +   + IG L  L  +  + N I +
Sbjct: 267 LKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 138 LPLSFSKLHNLKHLSLSQNQLNK 160
           +    + L  +     +   + K
Sbjct: 326 IR-PLASLSKMDSADFANQVIKK 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 33/189 (17%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            + L++ G    P+    L+    +L  S N +++ P    S   LKSL  D N +++L 
Sbjct: 75  ELELNNLGLSSLPELPPHLE----SLVASCNSLTELPELPQS---LKSLLVDNNNLKALS 127

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV--- 173
                LE L  VS N   +++LP        LK + +  N L K P +  +L+ +     
Sbjct: 128 DLPPLLEYL-GVSNNQ--LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 183

Query: 174 ----------------LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK 217
                           +    N ++ +PD    ++   +    N +  + P++     L 
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNNILEEL-PELQNLPFLT 240

Query: 218 ILRLEENCL 226
            +  + N L
Sbjct: 241 TIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 42/223 (18%)

Query: 60  LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-------LDLASYQL-------LKSL 105
                  E P E   +K+       + ++  +          ++A  +L          L
Sbjct: 18  RHSSNLTEMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 106 TFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165
             +   + SLP+    LE L   S  CN + ELP     L +L   + +   L+  P +L
Sbjct: 77  ELNNLGLSSLPELPPHLESL-VAS--CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133

Query: 166 ----------------FNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD 209
                            N   L ++D+  N ++ +PD    ++   +    NQ+  + P+
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE--FIAAGNNQLEEL-PE 190

Query: 210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
           +     L  +  + N  ++  +P       ++ ++    N+ E
Sbjct: 191 LQNLPFLTAIYADNN--SLKKLPDLP---LSLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 36/213 (16%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
           +I++ +   K+ PD    L      +    N++ + P +L +   L ++  D N ++ LP
Sbjct: 157 IIDVDNNSLKKLPDLPPSL----EFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP 211

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV--- 173
               +LE +     N  +++ELP     L  L  +    N L   P +  +L+ L+V   
Sbjct: 212 DLPLSLESI-VAGNN--ILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267

Query: 174 --------------LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
                         LD+S N    + +    +    +N + N+I  +         L+ L
Sbjct: 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLY--YLNASSNEIRSLCDLPP---SLEEL 322

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
            +  N L    +P        +  L    N   
Sbjct: 323 NVSNNKL--IELPALP---PRLERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 27/194 (13%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
           +N+      + P+    L      LD+S+N  S       +   L  L    N+I SL  
Sbjct: 262 LNVRDNYLTDLPELPQSL----TFLDVSENIFSGLSELPPN---LYYLNASSNEIRSLCD 314

Query: 118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
              +LE+L NVS N   + ELP   +    L+ L  S N L + P +  NL+    L + 
Sbjct: 315 LPPSLEEL-NVSNNK--LIELP---ALPPRLERLIASFNHLAEVPELPQNLK---QLHVE 365

Query: 178 FNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILT 237
           +N +   PD    ++ + MN +  ++            LK L +E N L     P     
Sbjct: 366 YNPLREFPDIPESVEDLRMNSHLAEV------PELPQNLKQLHVETNPL--REFPDIP-- 415

Query: 238 SSNVCTLNVEGNLF 251
             +V  L +     
Sbjct: 416 -ESVEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 30/199 (15%), Positives = 73/199 (36%), Gaps = 28/199 (14%)

Query: 68  FPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTL---- 122
           F +  N     L+      + +++ P++  + +         ++ E + P   G      
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 123 ---------EKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV 173
                     +   +  N   +  LP       +L+ L  S N L + P +  +L+ L V
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLV 118

Query: 174 LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPT 233
            + +   +  +P  +       + ++ NQ+  + P++     LKI+ ++ N  ++  +P 
Sbjct: 119 DNNNLKALSDLPPLL-----EYLGVSNNQLEKL-PELQNSSFLKIIDVDNN--SLKKLPD 170

Query: 234 CILTSSNVCTLNVEGNLFE 252
                 ++  +    N  E
Sbjct: 171 LP---PSLEFIAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            +N+S+    E P     L+     L  S N +++ P    +   LK L  + N +   P
Sbjct: 321 ELNVSNNKLIELPALPPRLE----RLIASFNHLAEVPELPQN---LKQLHVEYNPLREFP 373

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
               ++E L       + + E+P       NLK L +  N L +FP +  +++    L +
Sbjct: 374 DIPESVEDLRM----NSHLAEVP---ELPQNLKQLHVETNPLREFPDIPESVED---LRM 423

Query: 177 SFNRIESIPDGIGKM--KVIEMNLNKNQICH 205
           +  R+    +   +   K+ +     +   H
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 6e-19
 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 18/214 (8%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY-QLLKSLTFDQNKIESL 115
            +++           +  L   ++ + +  +K+   P   + + + L+ L   +N +   
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 116 ----PKDIGTLEKLE--NVSGNC-NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNL 168
                   G    L+   +S N    +++       L NL  L +S+N  +  P      
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409

Query: 169 QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAI 228
           + +  L+LS   I  +   I +  +  ++++ N +   S  +    RL+ L +  N   +
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQ-TLEVLDVSNNNLDSFSLFLP---RLQELYISRNK--L 463

Query: 229 NAIPTCILTSSNVCTLNVEGNL---FEMKAFQQL 259
             +P   L    +  + +  N         F +L
Sbjct: 464 KTLPDASL-FPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 12/189 (6%)

Query: 48  HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLT 106
            F+     G+ + +        +        +R L I Q  +        +  + +K +T
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 107 FDQNKIESLPKDIGT-LEKLE--NVSGNC--NLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
            + +K+  +P      L+ LE  ++S N       +         +L+ L LSQN L   
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 162 PTVLF---NLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLK 217
                    L++L  LD+S N    +PD      K+  +NL+   I  +   I +   L+
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ--TLE 434

Query: 218 ILRLEENCL 226
           +L +  N L
Sbjct: 435 VLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 32/177 (18%)

Query: 55  TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE 113
           +GV +   + F   P     L A +++LD+S NKI+     DL +   L+ L    ++I 
Sbjct: 7   SGVCDGRSRSFTSIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLD 172
           ++  D                      +F  L +L+HL LS N L+   +  F  L  L 
Sbjct: 64  TIEGD----------------------AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 173 VLDLSFNRIESIPDG--IGKM-KVIEMNL-NKNQICHISP-DISECVRLKILRLEEN 224
            L+L  N  +++        +  +  + + N      I   D +    L  L ++  
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            +++S   F   PD     +  +R L++S   I      +     L+ L    N ++S  
Sbjct: 391 SLDISRNTFHPMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT--LEVLDVSNNNLDSFS 447

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLD 175
             +  L++L  +S N   +K LP   S    L  + +S+NQL   P  +F  L  L  + 
Sbjct: 448 LFLPRLQEL-YISRN--KLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 176 LSFNRI 181
           L  N  
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 36/203 (17%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L     ++S+   D  +   L      ++ + S    + T+           L  +L
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLD---------------------- 172
              +S L  +K +++  +++   P        +L+ LD                      
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 173 --VLDLSFNRIESIPDGIGKM----KVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
              L LS N + S+      +     +  +++++N    +        +++ L L     
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-- 420

Query: 227 AINAIPTCILTSSNVCTLNVEGN 249
            I  + TCI  +  V  L+V  N
Sbjct: 421 GIRVVKTCIPQTLEV--LDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 31/233 (13%), Positives = 87/233 (37%), Gaps = 29/233 (12%)

Query: 49  FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP------------LDL 96
            ++ +    + L         +   ++ + +R L++    +++F             +  
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 97  ASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP---------LSFSKLHN 147
            +++         N++  L + I  L ++E      N + +           L   +   
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 148 LKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQIC 204
           ++ L + Q  L    + ++  L+ +  + +  +++  +P    +    +  ++L++N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 205 HISPDISEC----VRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGNLFE 252
                 S C      L+ L L +N L ++      +LT  N+ +L++  N F 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 31/256 (12%), Positives = 77/256 (30%), Gaps = 53/256 (20%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-------------LDLASYQL-- 101
            ++LS               + L+ L++  N                   L + + +   
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 102 ------------LKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELP-LSFSKLHN 147
                       L  L      + +     + ++  + +++ + +    L  +    L +
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 148 LKHLSLSQNQLNKFPTVLF------------NLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
           +++L L    L +F                   +   + D SFN +  +   I ++  +E
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 196 M-NLNKNQICHISPD----ISECVRLKILRLEENCLAINAI----PTCILTSSNVCTLNV 246
             +   N +   +P     +SE  +++ + +    +    +     T       V  + V
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 247 EGN---LFEMKAFQQL 259
           E +   L      Q L
Sbjct: 318 ENSKVFLVPCSFSQHL 333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 17/194 (8%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSG----NCNL 134
           LR LD+S N       +    + L+ L F  + ++ +  +      LE +        N 
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTNT 436

Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKF--PTVLFNLQHLDVLDLSFNRIESIPDGI--GK 190
             +    F  L +L  L ++ N         V  N  +L  LDLS  ++E I  G+    
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 191 MKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEG 248
            ++  +N++ N +  +     ++   L  L    N   I      +     ++   N+  
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN--RIETSKGILQHFPKSLAFFNLTN 554

Query: 249 NLF----EMKAFQQ 258
           N      E + F Q
Sbjct: 555 NSVACICEHQKFLQ 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 9e-19
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 32/227 (14%)

Query: 57  VINLSHQGFKEFPDE-----------MNELKAV----------LRTLDISQNKISKFPLD 95
                 Q   + PD+            N LK +          L+ LD+S+ +I      
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 96  -LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLS 152
                  L +L    N I+S        L  LEN+      +  L      +L  LK L+
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 153 LSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGI------GKMKVIEMNLNKNQIC 204
           ++ N ++  K P    NL +L  +DLS+N I++I               + ++++ N I 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 205 HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251
            I     + ++L  L L  N  + N + TC+   + +    +    F
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 8e-17
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 14/204 (6%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESL 115
            ++L+    K   D     K   ++L I + ++ +FP LDL     LKSLT   NK    
Sbjct: 289 AMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSIS 343

Query: 116 PKDIGTLEKLE--NVSGNC-NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
            K +  L  L   ++S N  +       S    ++L+HL LS N           L+ L 
Sbjct: 344 FKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 173 VLDLSFNRIESIPDGI---GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAI 228
            LD   + ++ + +        K++ ++++          I      L  L++  N    
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 229 NAIPTCILTSSNVCTLNVEGNLFE 252
           N +      ++N+  L++     E
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 33/179 (18%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP--LDLASYQLLKSLTFDQNKIES 114
            ++LS  G          L+  L+ LD   + + +        S + L  L       + 
Sbjct: 380 HLDLSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 115 LPKDI-GTLEKLE--NVSGNC-----------------------NLIKELP-LSFSKLHN 147
               I   L  L    ++GN                          ++++    F  LH 
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 148 LKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MKVIEMNLNKNQI 203
           L+ L++S N L    +  +  L  L  LD SFNRIE+    +      +   NL  N +
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 18/188 (9%)

Query: 57  VINLSHQGFKEFPDE----MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
            ++LS+   +         + E   V  +LD+S N I            L  LT   N  
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 113 -----ESLPKDIGTLEKLENVSG---NCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF-- 161
                ++  +++  L     + G   +   ++    S    L ++          N F  
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 162 -PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILR 220
                  L ++  + L+   I+ + D     K   +++ + Q+        +   LK L 
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLT 334

Query: 221 LEENCLAI 228
           L  N  +I
Sbjct: 335 LTMNKGSI 342

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 57  VINLSHQGFKEF--PDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE 113
            + ++   FK+    +        L  LD+S+ ++ +       +   L+ L    N + 
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTN-LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 114 SLPKD-IGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHL 171
            L       L  L  +  + N I+    +      +L   +L+ N +         LQ +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570

Query: 172 DVLDLSFNRIESI 184
                    +E +
Sbjct: 571 KEQKQFLVNVEQM 583

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQI 203
                      +L+K P  + +      +DLSFN ++ +         ++  ++L++ +I
Sbjct: 11  VPNITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68

Query: 204 CHISPD-ISECVRLKILRLEENCL 226
             I          L  L L  N +
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPI 92

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLP 116
           +    +  +E PD ++      R L++ +N+I           + L+ L   +N I ++ 
Sbjct: 48  VICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 117 KDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDV 173
                 L  L  +    N +  +P  +F  L  LK L L  N +   P+  F  +  L  
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 174 LDLS-FNRIESIPDGI--GKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230
           LDL    R+  I +G   G   +  +NL    +  I P+++  ++L  L L  N   ++A
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGN--HLSA 221

Query: 231 IPTCILTS-SNVCTLNVEGNL---FEMKAFQQL 259
           I         ++  L +  +     E  AF  L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 7e-17
 Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 12/192 (6%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L  L +S+N I    +        L +L    N++ ++P      L KL+ +    N I+
Sbjct: 90  LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

Query: 137 ELPL-SFSKLHNLKHLSLSQ-NQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKV 193
            +P  +F+++ +L+ L L +  +L+      F  L +L  L+L+   +  IP+    +K+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209

Query: 194 IEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLF 251
            E++L+ N +  I P      + L+ L + ++   I  I      +  ++  +N+  N  
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 252 EM---KAFQQLD 260
            +     F  L 
Sbjct: 268 TLLPHDLFTPLH 279

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 99  YQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQN 156
                 +   +  +  +P  I      L N+  N   I+ +   SF  L +L+ L LS+N
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLL-NLHEN--QIQIIKVNSFKHLRHLEILQLSRN 98

Query: 157 QLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SE 212
            +       F  L +L+ L+L  NR+ +IP+G      K+ E+ L  N I  I     + 
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 213 CVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLF-EMKAFQQL 259
              L+ L L      ++ I        SN+  LN+      E+     L
Sbjct: 159 IPSLRRLDL-GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIK 136
           L  LD+S N +S            L+ L   Q++I+ + ++    L+ L  ++   N + 
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 137 ELPLS-FSKLHNLKHLSLSQNQLN 159
            LP   F+ LH+L+ + L  N  N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPWN 292

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L   ++S N +S   + +A    ++ L    N I  +        +L  +    N + + 
Sbjct: 194 LFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT 247

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKVIEM- 196
                    L  + LS N+L K     F  +Q L+ L +S NR+ ++      +  +++ 
Sbjct: 248 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
           +L+ N + H+  +  +  RL+ L L+ N  +I  +         +  L +  N
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHN--SIVTLKLSTH--HTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 4e-18
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 28/205 (13%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
            + +    + + K P   L S++ ++ L  +  +IE +          ++ +    N I+
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 137 ELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MK 192
            LP   F  +  L  L L +N L+  P  +F N   L  L +S N +E I D   +    
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 193 VIEMNLNKNQICHISPD-----------------ISECVRLKILRLEENCLAINAIPTCI 235
           +  + L+ N++ H+                    ++  + ++ L    N  +IN +   +
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN--SINVVRGPV 230

Query: 236 LTSSNVCTLNVEGN-LFEMKAFQQL 259
                +  L ++ N L +       
Sbjct: 231 N--VELTILKLQHNNLTDTAWLLNY 253

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 3/149 (2%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
           L  L +  N ++     L +Y  L  +    N++E +       +++LE +  + N +  
Sbjct: 234 LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKMKVIEM 196
           L L    +  LK L LS N L            L+ L L  N I ++       +K + +
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352

Query: 197 NLNKNQICHISPDISECVRLKILRLEENC 225
           + N      +        R  +   +++C
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQHC 381

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 8/148 (5%)

Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
            Q + + +  ++       +V  +              L+N K ++   + + K P  L 
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 167 -NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLE 222
            + + +++L+L+  +IE I          + ++ +  N I ++ P +      L +L LE
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 223 ENCLAINAIPTCILTS-SNVCTLNVEGN 249
            N   ++++P  I  +   + TL++  N
Sbjct: 132 RN--DLSSLPRGIFHNTPKLTTLSMSNN 157

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 11/185 (5%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L+ LD+S+ +I         S   L +L    N I+SL       L  L+ +      + 
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 137 ELP-LSFSKLHNLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGIG---- 189
            L       L  LK L+++ N +   K P    NL +L+ LDLS N+I+SI         
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 190 --KMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVE 247
              +  + ++L+ N +  I P   + +RL  L L  N  ++N + TCI   + +    + 
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 248 GNLFE 252
              F 
Sbjct: 234 LGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 6e-17
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 49  FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFD 108
           F         +L     +   D         + L++   K  +FP      + LK LTF 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTL--KLKSLKRLTFT 333

Query: 109 QNKIESLPKDIGTLEKLE--NVSGNC-NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165
            NK  +   ++  L  LE  ++S N  +       S     +LK+L LS N +    +  
Sbjct: 334 SNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 166 FNLQHLDVLDLSFNRIESIPDGI---GKMKVIEMNLNKNQICHISPDI-SECVRLKILRL 221
             L+ L+ LD   + ++ + +         +I ++++          I +    L++L++
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 222 EENCLAINAIPTCILTSSNVCTLNVEGN 249
             N    N +P       N+  L++   
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.8 bits (179), Expect = 9e-15
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIES 114
            ++LS  G          L+  L  LD   + + +         L  L  L         
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 115 LPKDI-GTLEKLE--NVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQ 169
               I   L  LE   ++GN +  +   P  F++L NL  L LSQ QL +     F +L 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 170 HLDVLDLSFNRIESIPDGI 188
            L VL+++ N+++S+PDGI
Sbjct: 495 SLQVLNMASNQLKSVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 33/231 (14%), Positives = 66/231 (28%), Gaps = 38/231 (16%)

Query: 57  VINLSHQGFKEFPDE----MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
            ++LS    +         ++++  +  +LD+S N ++           L  LT   N  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 113 --ESLPKDIGTLEKLE------NVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF-- 161
               +   I  L  LE          N   +++   S    L NL         L+ +  
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 162 --PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHIS------------ 207
               +   L ++    L    IE + D         + L   +                 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 208 --------PDISECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN 249
                       +   L+ L L  N L+     +      +++  L++  N
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
           L  L IS+ K++  P DL     L  L  D NKI+++  +      KL  +    N I+ 
Sbjct: 174 LNYLRISEAKLTGIPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 138 LP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-------- 188
           +   S S L  L+ L L  N+L++ P  L +L+ L V+ L  N I  +            
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 189 --GKMKVIEMNLNKNQICHISPDISECVR-LKILRLEEN 224
                  I +  N      + P    CV     ++    
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 12/166 (7%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIKE 137
           LR +  S   +   P +++       L    N I  L KD    L+ L  +    N I +
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 138 L-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
           +   +FS L  L+ L +S+N L + P  L     L  L +  NRI  +P G+  G   + 
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 195 EMNLNKNQICH--ISPDISECVRLKILRLEENCLAINAIPTCILTS 238
            + +  N + +    P   + ++L  LR+ E    +  IP  +  +
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--KLTGIPKDLPET 194

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-------GTLEKLENVSGN 131
           LR L +  NK+S+ P  L   +LL+ +    N I  +  +                +S  
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 132 CNLIKEL---PLSFSKLHNLKHLSLSQNQ 157
            N +      P +F  + +   +     +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 5e-18
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 8/162 (4%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L  LD+++ +I     D   S   L +L    N +  + +      + L+++      I 
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 137 EL-PLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPDGI----GK 190
            +  +       L+ L L  N ++       F  + L VLD   N I  +         +
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP 232
              + +NLN N I  I P   +    + L        +    
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 79  LRTLDISQNKISKFPLD---LASYQLLKSLTFDQNKIESLPKDI-GTLEKLE--NVSGNC 132
           LR LD+S + I         L +   L+SL    N+  SL  +      +LE  +++   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESI----PDG 187
             +K+    F  LH LK L+LS + L+     LF  L  L  L+L  N          + 
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 188 IGKMKVIEM-NLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245
           +  +  +E+  L+   +  I     +    +  + L  N   + +     L+      LN
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN--RLTSSSIEALSHLKGIYLN 529

Query: 246 VEGNLFE 252
           +  N   
Sbjct: 530 LASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKEL 138
           +T +     +++ P  L +    + L F  N + ++       L  L  +      I  +
Sbjct: 15  KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 139 -PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
              +F   H L  L L+ N L           + L  L      I SI       +  + 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 195 EMNLNKNQICHISPD-ISECVRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGN 249
            + L  N I  I         +LK+L  + N +  ++      L  +   +LN+ GN
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 34/204 (16%), Positives = 77/204 (37%), Gaps = 13/204 (6%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP---LDLASYQLLKSLTFDQNKIES 114
           +NL+            +  AV ++L+    +        L  ++ Q L   TF+    E 
Sbjct: 184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 115 LPKDI---GTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170
           +   +        +E+++   +    +   +F     L+ L L+   L++ P+ L  L  
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST 302

Query: 171 LDVLDLSFNRIESIPD----GIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           L  L LS N+ E++          +  + +  N  ++   +  +     L+ L L  + +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 227 -AINAIPTCILTSSNVCTLNVEGN 249
              +     +   S++ +LN+  N
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 38/210 (18%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIK 136
           L+ L   Q  IS      L + + L+SL    N I S+        EKL+ +    N I 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 137 EL-PLSFSKLHNLKH--LSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI------------ 181
            L     S L    +  L+L+ N +       F+      L+    +             
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 182 ------------------ESIPDGIGKMKVIEMNLNKNQICHISPDI-SECVRLKILRLE 222
                              ++ +G+ +M V  +NL K+   +IS +       L+ L L 
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 223 ENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
                ++ +P+ ++  S +  L +  N FE
Sbjct: 287 AT--HLSELPSGLVGLSTLKKLVLSANKFE 314

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD----IGTLEKLENVSGNCN 133
           L+ L++S + +             L+ L    N            + TL +LE +  +  
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 134 LIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI 188
            +  +   +F+ L  + H+ LS N+L        +      L+L+ N I  I   +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 8e-18
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 38/209 (18%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDIGTLEKLENVSGNCNLI 135
           L  L +S N +S       S     SL +     N + ++  +   LE+LE++    + +
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113

Query: 136 KELPLS--FSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLD----------------- 172
           K++     F  L NL +L +S          +F    +L+ L                  
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 173 -----VLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
                 LDLS  ++E +          +  +N++ N    +          L++L    N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 225 CLAINAIPTCILTS--SNVCTLNVEGNLF 251
              I       L    S++  LN+  N F
Sbjct: 234 --HIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 32/179 (17%), Positives = 70/179 (39%), Gaps = 12/179 (6%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKEL 138
             +  +   ++  P  + S      L  + NK++SLP  +   L +L  +S + N +   
Sbjct: 10  TEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 139 PL---SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG---IGKMK 192
                S     +LK+L LS N +    +    L+ L+ LD   + ++ + +    +    
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 193 VIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN 249
           +I ++++          I +    L++L++  N          I T   N+  L++   
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L  LD+SQ ++ +       S   L+ L    N   SL       L  L+ +  + N I 
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 137 ELPLS-FSKL-HNLKHLSLSQNQLN 159
                       +L  L+L+QN   
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  L ++ NK++     LA+ + L  L  D+NK++ L   +  L+KL+++S   N I ++
Sbjct: 70  VTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI 127

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
                 L  L+ L L  N++    TVL  L  LD L L  N+I  I    G  K+  + L
Sbjct: 128 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
           +KN I  +   ++    L +L L   
Sbjct: 186 SKNHISDLRA-LAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
               ++ +  ++           +  +  + + I+S+ + I  L  +  +  N N + ++
Sbjct: 26  TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 83

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMN 197
               + L NL  L L +N++    + L +L+ L  L L  N I  I +G+  + ++  + 
Sbjct: 84  K-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLY 140

Query: 198 LNKNQICHISPDISECVRLKILRLEEN 224
           L  N+I  I+  +S   +L  L LE+N
Sbjct: 141 LGNNKITDITV-LSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 6e-15
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 5/148 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  +  + + I      +     +  L  + NK+  + K +  L+ L  +  + N +K+L
Sbjct: 48  IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL 105

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             S   L  LK LSL  N ++     L +L  L+ L L  N+I  I       K+  ++L
Sbjct: 106 S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163

Query: 199 NKNQICHISPDISECVRLKILRLEENCL 226
             NQI  I P ++   +L+ L L +N +
Sbjct: 164 EDNQISDIVP-LAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L++L +  N IS     L     L+SL    NKI  +   +  L KL+ +S   N I ++
Sbjct: 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 171

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L  L++L LS+N ++     L  L++LDVL+L      + P       V+   +
Sbjct: 172 V-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 199 NKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCI 235
                  ++P+ IS+    +   ++ +        + I
Sbjct: 230 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
               IK++  S          +L +  +    T    L  +D +  + + I+S+  GI  
Sbjct: 10  VPTPIKQIF-SDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQY 66

Query: 191 MKVIEM-NLNKNQICHISPDISECVRLKILRLEEN 224
           +  +    LN N++  I P ++    L  L L+EN
Sbjct: 67  LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKE 137
               D S  K+++ P DL +   +  L    N++  L   +     +L ++    N I +
Sbjct: 6   HEVADCSHLKLTQVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 138 L-PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKV 193
           L P    KL  LK L+L  N+L++     F    +L  L L  N I+ I +     +  +
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 194 IEMNLNKNQICHISPD-ISECVRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGNLF 251
           I ++L+ N +         +   L+ L L  N + A+ +    I  +S++  L +  N  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 252 E 252
           +
Sbjct: 184 K 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 14/184 (7%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIE 113
            ++LSH G              L+ L +S NKI     +        SL       N+I+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 114 SL-PKDIGTLEKLE--NVSGNC--NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-- 166
              P     + +L    ++       + E         ++++LSLS +QL+      F  
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 167 -NLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLE 222
               +L +LDLS+N +  + +     + ++    L  N I H+    +     ++ L L+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 223 ENCL 226
            +  
Sbjct: 305 RSFT 308

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL--PKDIGTLEKLE--NVSGNCN 133
           L  L++++NKISK   D  +    L+ L    N+I      ++   LE +    +S N  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-K 441

Query: 134 LIKELPLSFSKLHNLKHLSLSQNQL---NKFPTVLFNLQHLDVLDLSFNRIESIPDGI-- 188
            ++    SF+ + +L+ L L +  L   +  P+    L++L +LDLS N I +I D +  
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 189 GKMKVIEMNLNKNQICHISPD---------ISECVRLKILRLEENCLAINAIPTCILTSS 239
           G  K+  ++L  N +  +            +     L IL LE N               
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLF 560

Query: 240 NVCTLNVEGNLFE 252
            +  +++  N   
Sbjct: 561 ELKIIDLGLNNLN 573

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 22/219 (10%)

Query: 57  VINLSHQGFKEFPDEM--NELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE 113
            ++LS+       +          L  LD+S N ++    D  A    L+    + N I+
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 114 SL-PKDIGTLEKLE--NVSGN--------CNLIKELPLSFSKLHNLKHLSLSQNQLNKFP 162
            L    +  L  +   N+  +         +L K    SF  L  L+HL++  N +    
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 163 TVLF-NLQHLDVLDLSFNRIESIP------DGIGKMKVIEMNLNKNQICHISPD-ISECV 214
           + +F  L +L  L LS +              +    +  +NL KN+I  I  D  S   
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 215 RLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253
            L++L L  N +             N+  + +  N +  
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 16/147 (10%)

Query: 57  VINLSH---QGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKI 112
            + L     +     P     L+  L  LD+S N I+    D L   + L+ L    N +
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 113 ESLPKD---------IGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKF- 161
             L K          +  L  L  ++   N   E+    F  L  LK + L  N LN   
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGI 188
            +V  N   L  L+L  N I S+   +
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 16/168 (9%)

Query: 57  VINLSHQGFKEFPDE-MNELKAVLRTLDISQNKISKFPLD---------LASYQLLKSLT 106
           +++LS+       D+ +  L+  L  LD+  N +++             L     L  L 
Sbjct: 484 ILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 107 FDQNKIESLPKD-IGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV 164
            + N  + +P +    L +L+ +    N +  L    F+   +LK L+L +N +      
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 165 LF--NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDI 210
           +F    ++L  LD+ FN  +   + I       +N     I  +S   
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNW-INETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQIC 204
           + +    S  +L + P  L    ++ VL+L+ N++  +P     +  ++  +++  N I 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 205 HISPD-ISECVRLKILRLEEN 224
            + P+   +   LK+L L+ N
Sbjct: 63  KLEPELCQKLPMLKVLNLQHN 83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 67  EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEK 124
           + P  ++     L +L +S N +S   P  L S   L+ L    N +E  +P+++  ++ 
Sbjct: 409 KIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 125 LENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE 182
           LE +     +L  E+P   S   NL  +SLS N+L  + P  +  L++L +L LS N   
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 183 -SIPDGIGKMKVIE-MNLNKNQI---------------------CHISPDISECVRLKIL 219
            +IP  +G  + +  ++LN N                             I      K  
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 220 RLEENCLAIN-AIPTCILTSSNVCTLNVEGNLF 251
               N L         +   S     N+   ++
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 39/232 (16%)

Query: 57  VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIE-S 114
            +++S      +F   ++     L+ L+IS N+    P+     + L+ L+  +NK    
Sbjct: 227 HLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGE 284

Query: 115 LPKDI-GTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPT-VLFNLQH 170
           +P  + G  + L  +     +    +P  F     L+ L+LS N  + + P   L  ++ 
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 171 LDVLDLSFNRIE-SIPDGIGKMK----------------------------VIEMNLNKN 201
           L VLDLSFN     +P+ +  +                             + E+ L  N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 202 QIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
                I P +S C  L  L L  N L+   IP+ + + S +  L +  N+ E
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 19/211 (9%)

Query: 57  VINLSHQGFK----EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
            I+LS +            +  L   L +L +S + I+           L SL   +N +
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTG-LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 113 E-SLP--KDIGTLEKLENVS-GNCNLIKELPLS-FSKLHNLKHLSLSQNQLN-KFPTVLF 166
              +     +G+   L+ ++  +  L     +S   KL++L+ L LS N ++        
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 167 ---NLQHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRL 221
                  L  L +S N+I   +   + +   +  ++++ N      P + +C  L+ L +
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 230

Query: 222 EENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
             N L+       I T + +  LN+  N F 
Sbjct: 231 SGNKLS-GDFSRAISTCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 69  PDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLE 126
            +++N L       +I+             +   +  L    N +   +PK+IG++  L 
Sbjct: 601 SEQLNRLST-RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 127 --NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE- 182
             N+  N ++   +P     L  L  L LS N+L+ + P  +  L  L  +DLS N +  
Sbjct: 660 ILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 183 SIPDG 187
            IP+ 
Sbjct: 719 PIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 20/187 (10%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIE-SLPKDIGTLEKLENVS----G 130
           L+ L++S N +  FP  ++    L SL       N I  +        +    +      
Sbjct: 128 LKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGI 188
              +  ++ +S  +  NL+ L +S N  +   P  L +   L  LD+S N++       I
Sbjct: 187 GNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243

Query: 189 GKMKVIE-MNLNKNQI-CHISPDISECVRLKILRLEENCLAINAIPTCILTS-SNVCTLN 245
                ++ +N++ NQ    I P       L+ L L EN      IP  +  +   +  L+
Sbjct: 244 STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLD 300

Query: 246 VEGNLFE 252
           + GN F 
Sbjct: 301 LSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 32/176 (18%)

Query: 57  VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS---------------------KFPL 94
           ++ LS+  F    P E+ + ++ L  LD++ N  +                     K  +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576

Query: 95  DLASYQLLKSLTFDQNKIE---SLPKDIGTLEKLE--NVSGNCNLIKELPLSFSKLHNLK 149
            + +  + K      N +E      + +  L      N++           +F    ++ 
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-VYGGHTSPTFDNNGSMM 635

Query: 150 HLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIE-MNLNKNQ 202
            L +S N L+   P  + ++ +L +L+L  N I  SIPD +G ++ +  ++L+ N+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 12/155 (7%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTF----DQNKIESLPKDI-GTLEKLENVSGNCN 133
           LR L +  N I   P    ++  + SL      +  K+E + +     L  L+ ++    
Sbjct: 149 LRELWLRNNPIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 134 LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GK 190
            IK++P + + L  L+ L +S N   +     F  L  L  L +  +++  I      G 
Sbjct: 207 NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 191 MKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
             ++E+NL  N +  +  D+ +    L  L L  N
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 35/187 (18%)

Query: 54  KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKI 112
           +   +  + +G  E P  +    +  R L++ +N I             L+ L   +N I
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 113 ESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHL 171
             +                         +F+ L +L  L L  N L   P+  F  L  L
Sbjct: 112 RQIE----------------------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149

Query: 172 DVLDLSFNRIESIPDGI----GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCL 226
             L L  N IESIP         +  +++     ++ +IS         LK L L     
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMC-- 206

Query: 227 AINAIPT 233
            I  +P 
Sbjct: 207 NIKDMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIK 136
           L  L++S N   +           LK L    +++  + ++    L  L  ++   N + 
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 137 ELPLS-FSKLHNLKHLSLSQNQLN 159
            LP   F+ L  L  L L  N  N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
           L  + I+   I+  P  L     L  L  D NKI  +       L  L  +  + N I  
Sbjct: 173 LSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

Query: 138 LP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-------- 188
           +   S +   +L+ L L+ N+L K P  L + +++ V+ L  N I +I            
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 189 GKMKVIEMNLNKNQICH--ISPDISECVR-LKILRLEEN 224
            K     ++L  N + +  I P    CV     ++L   
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 18/191 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
           LR +  S   + K P DL        L    NKI  +       L+ L  +    N I +
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 138 L-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
           + P +F+ L  L+ L LS+NQL + P  +   + L  L +  N I  +   +  G  ++I
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 195 EMNLNKNQI--CHISPDI-SECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251
            + L  N +    I         +L  +R+ +    I  IP  +    ++  L+++GN  
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGLP--PSLTELHLDGNKI 204

Query: 252 EM---KAFQQL 259
                 + + L
Sbjct: 205 TKVDAASLKGL 215

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
           L  L +S N IS      LA+   L+ L  + NK+  +P  +   + ++ V  + N I  
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277

Query: 138 LP-------LSFSKLHNLKHLSLSQNQLNKF---PTVLFNLQHLDVLDLSFNR 180
           +           +K  +   +SL  N +  +   P+    +     + L   +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 5e-17
 Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  LDIS NK+S     LA    L+SL    N+I  +   +G L  L+ +S N N +K++
Sbjct: 179 LERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI 236

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             + + L NL  L L+ NQ++     L  L  L  L L  N+I +I    G   +  + L
Sbjct: 237 G-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
           N+NQ+  ISP IS    L  L L  N
Sbjct: 295 NENQLEDISP-ISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L +  N+IS     LA    L +L  ++N++E +   I  L+ L  ++   N I ++
Sbjct: 267 LTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI 324

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               S L  L+ L    N+++   + L NL +++ L    N+I  +       ++ ++ L
Sbjct: 325 S-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGL 382

Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250
           N     +   +      + I    +N       P  I    +    ++  NL
Sbjct: 383 NDQAWTNAPVNYKAN--VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 6/146 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           + TL   +  I      +     L  + F  N++  +   +  L KL ++  N N I ++
Sbjct: 48  VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L NL  L+L  NQ+      L NL +L+ L+LS N I  I    G   + +++ 
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
             NQ+  + P ++    L+ L +  N
Sbjct: 164 G-NQVTDLKP-LANLTTLERLDISSN 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 18/194 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
                + +  ++   +       + +L  D+  I+S+   +  L  L  ++ + N + ++
Sbjct: 26  KMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI 83

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMN 197
                 L  L  + ++ NQ+      L NL +L  L L  N+I  I   +  +  +  + 
Sbjct: 84  T-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140

Query: 198 LNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN-------L 250
           L+ N I  IS  +S    L+ L        +  +       + +  L++  N       L
Sbjct: 141 LSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANL----TTLERLDISSNKVSDISVL 195

Query: 251 FEMKAFQQLDGYNN 264
            ++   + L   NN
Sbjct: 196 AKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQ 169
             I  +  D   L +          + +   S + L  +  L   +  +      +  L 
Sbjct: 12  TPINQIFTDTA-LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLN 68

Query: 170 HLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           +L  ++ S N++  I   +  + K++++ +N NQI  I+P ++    L  L L  N +
Sbjct: 69  NLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 2/107 (1%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L+ L    NK+S     LA+   +  L+   N+I  L   +  L ++  +  N       
Sbjct: 333 LQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNA 390

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
           P+++    ++ +   +       P  + +       D+++N      
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 1/102 (0%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  L    N+IS     LA+   +  L  +     + P +      + N   N       
Sbjct: 355 INWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNR 180
           P + S   +     ++ N  +    V +       +      
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 7e-17
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           + TL      ++     +     L  L    N+I  L   +  L K+  +  + N +K +
Sbjct: 43  ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV 100

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             + + L ++K L L+  Q+      L  L +L VL L  N+I +I    G   +  +++
Sbjct: 101 S-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
              Q+  ++P ++   +L  L+ ++N
Sbjct: 159 GNAQVSDLTP-LANLSKLTTLKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 7e-16
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           +  L++S N +      +A  Q +K+L     +I  +   +  L  L+ +  + N I  +
Sbjct: 87  ITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI 144

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L NL++LS+   Q++     L NL  L  L    N+I  I        +IE++L
Sbjct: 145 S-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
             NQI  +SP ++    L I+ L   
Sbjct: 203 KNNQISDVSP-LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L++  N+I+     L +   +  L    N ++++   I  L+ ++ +      I ++
Sbjct: 65  LIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV 122

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L NL+ L L  NQ+      L  L +L  L +   ++  +       K+  +  
Sbjct: 123 T-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
           + N+I  ISP ++    L  + L+ N
Sbjct: 181 DDNKISDISP-LASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L+ L +  N+I+     LA    L+ L+    ++  L   +  L KL  +  + N I ++
Sbjct: 131 LQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L NL  + L  NQ++     L N  +L ++ L+   I + P       V+   +
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

Query: 199 NKNQICHISPD 209
                  I+P 
Sbjct: 247 KGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
              +   ++ +         L+ +  +S     +  +      L+NL  L L  NQ+   
Sbjct: 21  AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL 78

Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILR 220
              L NL  +  L+LS N ++++   I  ++ I+  +L   QI  ++P ++    L++L 
Sbjct: 79  A-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLY 135

Query: 221 LEEN 224
           L+ N
Sbjct: 136 LDLN 139

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L TL    NKIS     LAS   L  +    N+I  +   +     L  V+     I   
Sbjct: 175 LTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQ 232

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD 186
           P+ ++    + ++    +     P  + +       +L++N    I +
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 8e-17
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 18/199 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
              ++  +  ++  P DL        L   +N + +          +L  ++ +   + +
Sbjct: 12  HLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIE 195
           L +    L  L  L LS NQL   P +   L  L VLD+SFNR+ S+P G   G  ++ E
Sbjct: 70  LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 196 MNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN---- 249
           + L  N++  + P + +   +L+ L L  N   +  +P  +L    N+ TL ++ N    
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 250 ----LFEMKAFQQLDGYNN 264
                F          + N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 67  EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE 126
             P  + +L   L  L I+   +S                       ++P  +  ++ L 
Sbjct: 92  PIPPAIAKLTQ-LHYLYITHTNVS----------------------GAIPDFLSQIKTLV 128

Query: 127 --NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLD-VLDLSFNRIE 182
             + S N  L   LP S S L NL  ++   N+++   P    +   L   + +S NR+ 
Sbjct: 129 TLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 183 -SIPDGIGKMKVIEMNLNKNQI-CHISPDISECVRLKILRLEENCL 226
             IP     + +  ++L++N +    S         + + L +N L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 32/188 (17%)

Query: 67  EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEK 124
             PD ++++K  L TLD S N +S   P  ++S   L  +TFD N+I  ++P   G+  K
Sbjct: 116 AIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 125 LE---NVS------------GNCNLIK----------ELPLSFSKLHNLKHLSLSQNQLN 159
           L     +S             N NL            +  + F    N + + L++N L 
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 160 -KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIEM-NLNKNQICHISPDISECVRL 216
                 +   ++L+ LDL  NRI  ++P G+ ++K +   N++ N +C   P      R 
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 217 KILRLEEN 224
            +     N
Sbjct: 294 DVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 102 LKSLTFDQNKIE---SLPKDIGTLEKLE--NVSGNCNLIKELPLSFSKLHNLKHLSLSQN 156
           + +L      +     +P  +  L  L    + G  NL+  +P + +KL  L +L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 157 QLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKM-KVIEMNLNKNQIC-HISPDISE 212
            ++   P  L  ++ L  LD S+N +  ++P  I  +  ++ +  + N+I   I      
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 213 CVRL-KILRLEENCL 226
             +L   + +  N L
Sbjct: 172 FSKLFTSMTISRNRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLN---KFPTVLFNLQHLDVLDLS-FNRIE-SIP 185
           N   +  L  + ++ + + +L LS   L      P+ L NL +L+ L +   N +   IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 186 DGIGKM-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCT 243
             I K+ ++  + +    +   I   +S+   L  L    N L    +P  I +  N+  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVG 153

Query: 244 LNVEGNLF 251
           +  +GN  
Sbjct: 154 ITFDGNRI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS----GNCNL 134
           L+ LD+S N +     +    + L+ L F  + ++ +  +      L N+      + + 
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHT 433

Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKF--PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM 191
                  F+ L +L+ L ++ N   +   P +   L++L  LDLS  ++E + P     +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 192 K-VIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
             +  +N++ N    +          L++L    N +  +         S++  LN+  N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 250 LF 251
            F
Sbjct: 554 DF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 12/203 (5%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
             +L     +   D         + L++   K  +FP        LK LTF  NK  +  
Sbjct: 286 SFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAF 341

Query: 117 KDIGTLEKLE--NVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV 173
            ++  L  LE  ++S N    K     S     +LK+L LS N +    +    L+ L+ 
Sbjct: 342 SEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 174 LDLSFNRIESIPDG--IGKMKVIEM-NLNKNQICHISPD-ISECVRLKILRLEENCLAIN 229
           LD   + ++ + +      ++ +   +++            +    L++L++  N    N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 230 AIPTCILTSSNVCTLNVEGNLFE 252
            +P       N+  L++     E
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 9/153 (5%)

Query: 81  TLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVS-GNCNLIKEL 138
           T    +    K P +L      K+L    N +  L      +  +L+ +    C +    
Sbjct: 11  TYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG-IGKMK-VIE 195
             ++  L +L  L L+ N +       F  L  L  L      + S+ +  IG +K + E
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 196 MNLNKNQI--CHISPDISECVRLKILRLEENCL 226
           +N+  N I    +    S    L+ L L  N +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 38/234 (16%)

Query: 57  VINLSHQGFKEFPDE----MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
            ++LS    +         ++++  +  +LD+S N ++           L  LT   N  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 113 -----ESLPKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKF----- 161
                ++  + +  LE    V G       L     S L  L +L++ + +L        
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 162 --PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD---------- 209
               +   L ++    L    IE + D         + L   +                 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 210 ----------ISECVRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGNLFE 252
                       +   L+ L L  N L            ++++  L++  N   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           ++  +   + I      +  +  LK L    N+I  L   +  L KLE +S N N +K L
Sbjct: 43  VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL 100

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             +      L  L L  N+L    + L +L++L++L +  N+++SI       K+  ++L
Sbjct: 101 --NGIPSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDL 157

Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
           + N+I +    ++   ++  + L   
Sbjct: 158 HGNEITNTGG-LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L+ L +S N+IS     L     L+ L+ ++N++++L  +      L  +  + N +++ 
Sbjct: 65  LKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT 121

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
             S   L NL+ LS+  N+L     +L  L  L+VLDL  N I +        KV  ++L
Sbjct: 122 D-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179

Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245
              +  +             L +       +         SN  +  
Sbjct: 180 TGQKCVN-----EPVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
               I ++      L N    +L +  +    +    L  +   +   + I+S+      
Sbjct: 5   RPTPINQVF-PDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQFF 62

Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA-INAIPTCILTSSNVCTLNVEG- 248
             + E++L+ NQI  +SP + +  +L+ L +  N L  +N IP+  L+   +    +   
Sbjct: 63  TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT 121

Query: 249 -NLFEMKAFQQLDGYNNYMDS 268
            +L  +K  + L   NN + S
Sbjct: 122 DSLIHLKNLEILSIRNNKLKS 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 2/108 (1%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L I  NK+      L     L+ L    N+I +    +  L+K+  +          
Sbjct: 130 LEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD 186
           P+ +     + +     +     P  + N        + +       +
Sbjct: 188 PVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKI-ESL 115
                    E P +   L      L     K+        + +  L+ +   QN + E +
Sbjct: 14  FLCQESKVTEIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 116 P----KDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQ 169
                 ++  L ++       N +  +    F  L NL++L +S   +   P V   +  
Sbjct: 71  EADVFSNLPKLHEIR--IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 170 HLDVLDLSFN-RIESIPDGI---GKMKVIEMNLNKNQICHISPDISECVRLKILRLEEN 224
              +LD+  N  I +I          + + + LNKN I  I        +L  L L +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 75  LKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNC 132
           L      L +++N I +         QL +    D N +E LP D+         +  + 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNR 180
             I  LP      L  L+  S     L K PT L  L  L    L++  
Sbjct: 212 TRIHSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEASLTYPS 257

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 38/207 (18%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
            + LD+S N +         S+  L+ L   + +I+++      +L  L  +    N I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 ELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDV------------------ 173
            L L +FS L +L+ L   +  L             L+ L+V                  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 174 ----LDLSFNRIESIPDGI------GKMKVIEMNLNKNQICHISPDISECVRLKILRLEE 223
               LDLS N+I+SI            +  + ++L+ N +  I P   + +RLK L L+ 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

Query: 224 NCLAINAIPTCILTS-SNVCTLNVEGN 249
           N   + ++P  I    +++  + +  N
Sbjct: 210 N--QLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQI 203
           + K+L LS N L    +  F +   L VLDLS   I++I DG       +  + L  N I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 204 CHISPDI-SECVRLKILRLEEN 224
             ++    S    L+ L   E 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVET 110

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 7/153 (4%)

Query: 79  LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDIGT-LEKLENVSGNCNLIK 136
           LR L ++ NK+   P  +    + L++L    NK+++LP  +   L  L  +  + N +K
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122

Query: 137 ELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMK 192
            LP   F  L  L +LSL  N+L   P  +F  L  L  L L  N+++ +P+G      +
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 193 VIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
           +  + L+ NQ+  +         +LK+L+L+EN
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 133 NLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI-- 188
           N +  LP   F +L  L+ L L+ N+L   P  +F  L++L+ L ++ N+++++P G+  
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106

Query: 189 GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
             + + E+ L++NQ+  + P +     +L  L L  N
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 36/183 (19%)

Query: 79  LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
              LD+S N +S+   +    +L  L SL    N +  +  +                  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------------------ 82

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKV 193
               +F  + NL++L LS N L+     LF +LQ L+VL L  N I  +         ++
Sbjct: 83  ----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138

Query: 194 IEMNLNKNQICHISPDI----SECVRLKILRLEENCLAINAIPTCI---LTSSNVCTLNV 246
            ++ L++NQI     ++    ++  +L +L L  N   +  +P      L +     L +
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--KLKKLPLTDLQKLPAWVKNGLYL 196

Query: 247 EGN 249
             N
Sbjct: 197 HNN 199

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 18/185 (9%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLE--NVSGNCNLIK 136
           R        +++ P  L +    + L    N I ++       LE+L+   +      + 
Sbjct: 7   RIAFYRFCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESI---PDGIGKMK 192
               +F  L NL+ L L  +++       F  L HL  L L F  +            +K
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 193 VIEM-NLNKNQICHISPD--ISECVRLKILRLEENCLAINAIPTCI---LTSSNVCTLNV 246
            +   +L+KNQI  +       +   LK +    N   I  +       L    +   ++
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--QIFLVCEHELEPLQGKTLSFFSL 181

Query: 247 EGNLF 251
             N  
Sbjct: 182 AANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 7/208 (3%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY-QLLKSLTFDQNKIESL 115
            ++LSH         + E    L+ L+++ NKI+K   +       L+ L    N +  L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 116 PKDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV 173
                  L K+  +    N I  +   +F  L  L+ L L  N L         +  +  
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPD 385

Query: 174 LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPT 233
           + LS N++ ++P       +I ++ N+ +   I   +     L+IL L +N  +  +   
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 234 CILTSSNVCTLNVEGNLFEMKAFQQLDG 261
               + ++  L +  N+ ++    +L  
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCW 473

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)

Query: 79  LRTLDISQNKISKFPLD--LASYQLLKSLTFDQNKIESLPKD--IGTLEKLENVSGNCNL 134
              + +S+N++    +   L     L+ L  +QN+  S   D        LE +    N+
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 135 IKELPLS------FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG 187
           ++    +      F  L +L+ L L+ N LN  P  +F +L  L  L L+ NR+  +   
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

Query: 188 IGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
                +  +++++NQ+   +PD+   V L +L +  N  
Sbjct: 523 DLPANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 5e-13
 Identities = 41/207 (19%), Positives = 82/207 (39%), Gaps = 18/207 (8%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL 115
           V+NL++    +  DE       L+ L++S N + +           +  +   +N I  +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 116 PKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174
                  LEKL+ +    N +  +      + ++  + LS N+L   P +         +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANL---I 406

Query: 175 DLSFNRIESIPDG--IGKMKVIEM-NLNKNQICHISPD--ISECVRLKILRLEEN---CL 226
            LS NR+E++     + ++  +++  LN+N+    S D   SE   L+ L L EN     
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 227 AINAIPTCILTS-SNVCTLNVEGNLFE 252
               +   +    S++  L +  N   
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 39/231 (16%)

Query: 57  VINLSHQGFKEFPDEMNELKAV--LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKI 112
            + L   G  +   +    + +  L  LD+S+N+I    L  +  +L  LKS+ F  N+I
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 113 ESLPKDIGTLEKLENVS------GNCNLIKELPLSFSKLHN------LKHLSLSQNQLNK 160
             + +    LE L+  +         +L   + + + K  N      L+ L +S N    
Sbjct: 161 FLVCEH--ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 161 FPTVLFN-------------LQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQI 203
             T  F+               H+      F+ I+        G+ +  V  ++L+   +
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 204 CHISPDISECV-RLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFE 252
             ++  + E +  LK+L L  N   IN I         N+  LN+  NL  
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 79  LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKD------IGTLEKLENVSG 130
           L+ L ++QN+ S    D    +   L+ L   +N ++   +          L  L+ +  
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 131 NCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIG 189
           N N +  LP   FS L  L+ LSL+ N+L           +L++LD+S N++ +    + 
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDVF 546

Query: 190 KMKVIEMNLNKNQICHIS 207
               +    +   IC   
Sbjct: 547 VSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 32/196 (16%), Positives = 53/196 (27%), Gaps = 30/196 (15%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
           LR LD+  +KI     D       L  L      +                         
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK------------------- 115

Query: 138 LPLSFSKLHNLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPD----GIGKM 191
               F  L  L  L LS+NQ+           L  L  +D S N+I  + +     +   
Sbjct: 116 -DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 192 KVIEMNLNKNQICHISPD--ISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEG 248
            +   +L  N +               + + LE   ++ N     I    SN  + +   
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 249 NLFEMKAFQQLDGYNN 264
           +L             +
Sbjct: 235 SLILAHHIMGAGFGFH 250

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 38/239 (15%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD---LASYQLLKSLTFDQNKIE 113
           +++L          +  +    L  L +    +S   L      + + L  L   +N+I 
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 114 SLP--KDIGTLEKLENVSGNCNLIKELP-LSFSKLH--NLKHLSLSQNQLNKFPTVLF-- 166
           SL      G L  L+++  + N I  +       L    L   SL+ N L    +V +  
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 167 -----NLQHLDVLDLSFNRIESIPDGI--------------GKMKVIEMNLNKNQICHIS 207
                    L++LD+S N       G                   ++      + I    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 208 PDI---SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFEM---KAFQQL 259
            +         ++ L L      + ++ + +  +  ++  LN+  N       +AF  L
Sbjct: 257 QNTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 32/135 (23%)

Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI----------------- 188
            + +        L + P VL   +    L LSFN I ++                     
Sbjct: 4   FDGRIAFYRFCNLTQVPQVLNTTER---LLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 189 ----------GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILT 237
                         +  ++L  ++I  + PD       L  LRL    L+   +      
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 238 S-SNVCTLNVEGNLF 251
           +   +  L++  N  
Sbjct: 121 NLKALTRLDLSKNQI 135

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 79  LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           ++T D+S++KI      + + +  L+ LT  QN+I  +  +    L  L  ++ + N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 137 ELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
            +    F  L  L+ L LS N +       F  L +L  L L  N+++S+PDGI
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 21/191 (10%)

Query: 55  TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKI 112
              ++LS     E  +        L+ L + Q        +     L  L  L  D N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 113 ESLPKDI-GTLEKLENVSGNCNLIKELPL---SFSKLHNLKHLSLSQNQLNKFP--TVLF 166
             L       L  LE ++     +    L    F  L +L+ L L  N + K    +   
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 167 NLQHLDVLDLSFNRIESIPDGI----GKMKVIEMNLNKNQICHISPDISE---------C 213
           N++   VLDL+FN+++SI +             + L+   +  ++               
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 214 VRLKILRLEEN 224
             +  L L  N
Sbjct: 212 TSITTLDLSGN 222

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 51  TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQ 109
            A      +LS          +      L  L ++QN+I+K   +       L  L   Q
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 110 NKIESLPKDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF- 166
           N + S+   +   L+KLE +  + N I+ L   SF  L NLK L+L  NQL   P  +F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 167 NLQHLDVLDLSFN 179
            L  L  + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           + TLD+S N            + +    FD      +   I +       S      K+ 
Sbjct: 214 ITTLDLSGNGFK---------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 139 P-LSFSKLH--NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMK 192
              +F  L    +K   LS++++      +F +   L+ L L+ N I  I D    G   
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324

Query: 193 VIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN 249
           ++++NL++N +  I   +     +L++L L  N   I A+         N+  L ++ N
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN--HIRALGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 38/207 (18%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI--GTLEKLENVSGNCN 133
           L  L ++Q  +    L    ++ L SL       N I+ +        + +   +    N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 134 LIKELP-LSFSKLH--NLKHLSLSQNQLNKFPT---------VLFNLQHLDVLDLSFNRI 181
            +K +           +   L LS   L                F    +  LDLS N  
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 182 ESIPDG-----IGKMKVIEMNLNKNQICHIS------PDISECV-------RLKILRLEE 223
           +          I   K+  + L+ +     S       D             +K   L +
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 224 NCLAINAIPTCILTS-SNVCTLNVEGN 249
           + +   A+   + +  +++  L +  N
Sbjct: 285 SKIF--ALLKSVFSHFTDLEQLTLAQN 309

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIE-SIPDGI--GKMKVIEMNLNKNQ 202
           ++ ++ LS N + +     F  LQ L  L +        I +    G   +I + L+ NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 203 ICHISPDI-SECVRLKILRLEENCLAINAIP 232
              +     +    L++L L +  L    + 
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L TL + +  + +           L+ L    N +++LP D    L  L ++  + N I 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 137 ELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
            +P  +F  LH+L  L L QN++       F +L  L  L L  N + ++P   
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 33/181 (18%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLP 116
            +   QG +  P  +    A  + + +  N+IS  P     + + L  L    N +  + 
Sbjct: 16  TSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN-QLNKFPTVLF-NLQHLDVL 174
                                   +F+ L  L+ L LS N QL       F  L  L  L
Sbjct: 73  ----------------------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 175 DLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAI 231
            L    ++ +  G+  G   +  + L  N +  +  D   +   L  L L  N   I+++
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSV 168

Query: 232 P 232
           P
Sbjct: 169 P 169

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 17/182 (9%)

Query: 59  NLSHQGFKEFPDEM-NELKAVLRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIES-- 114
           N+S      +  E+   LK  L+ L I+Q     F  +    +  L +L    N      
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 115 ------LPKDIGTLEKLENVSGN--CNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
                  P    TL+ L  +                +    L+ L LS N L        
Sbjct: 190 GLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 167 --NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEEN 224
                 L+ L+LSF  ++ +P G+   K+  ++L+ N++    P   E  ++  L L+ N
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPA-KLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN 306

Query: 225 CL 226
             
Sbjct: 307 PF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-----LDLASYQLLKSLTFDQNK 111
           V++++      F  E   +   L TLD+S N           L    +  L+ L      
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 112 IESLPKDIGTLEKLE------NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165
           +E+       L          ++S N         S      L  L+LS   L + P  L
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272

Query: 166 FNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQI 203
                L VLDLS+NR++  P      +V  ++L  N  
Sbjct: 273 P--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 20/213 (9%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI---ESL 115
                 F +    ++  +  +R   I    +    L +     L+ LT +  ++      
Sbjct: 55  EADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA-LRVLGISGLQELTLENLEVTGTAPP 113

Query: 116 PKDIGTLEKLENVSGNCNLIKELPLSFSKLHN-----LKHLSLSQNQLNKFP-TVLFNLQ 169
           P    T   L  ++             ++L       LK LS++Q     F    +    
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 170 HLDVLDLSFNRIESIPDGIGKM------KVIEMNLNKNQICHISPDISEC----VRLKIL 219
            L  LDLS N        I  +       +  + L    +   S   S      V+L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
            L  N L   A        S + +LN+     +
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 7e-15
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
           R L ++   ++     L    L+  L    N++ +LP  +  L  LE +  + N ++ + 
Sbjct: 444 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502

Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPDGIGKMKVI 194
              + L  L+ L L  N+L +   +  L +   L +L+L  N +        ++  +
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 1e-13
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 52/219 (23%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ-------- 109
             L     + +  +    +  L   ++S  K +    +L S + L+ L  +         
Sbjct: 331 CVLLKDRPECWCRDSATDEQ-LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 389

Query: 110 ------NKIESLPKDIGTLEKLENVSG--------------------------------N 131
                 + +    + +     L+ V                                   
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 132 CNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM 191
              +  L     +L  + HL LS N+L   P  L  L+ L+VL  S N +E++  G+  +
Sbjct: 450 HKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANL 507

Query: 192 KVIE-MNLNKNQICHIS--PDISECVRLKILRLEENCLA 227
             ++ + L  N++   +    +  C RL +L L+ N L 
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 7e-07
 Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 4/169 (2%)

Query: 82  LDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK-ELPL 140
             + +++   +  D A+ + L        K   L  ++ + ++L+ +          + L
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390

Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNK 200
               L  L +   +    +    V            S   +E+    +    V  ++L  
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
             +  +   + + + +  L L  N   + A+P  +     +  L    N
Sbjct: 451 KDLTVL-CHLEQLLLVTHLDLSHNR--LRALPPALAALRCLEVLQASDN 496

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 35/203 (17%)

Query: 55  TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE 113
            G+   S       P     L   +++LD+S N+I+     DL     L++L    N I 
Sbjct: 33  NGICKGSSGSLNSIPSG---LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89

Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLD 172
           ++ +D                      SFS L +L+HL LS N L+   +  F  L  L 
Sbjct: 90  TIEED----------------------SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 173 VLDLSFNRIESIPDGIG----KMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLA 227
            L+L  N  +++ +           I    N +    I     +    L+ L ++ +   
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-- 185

Query: 228 INAIPTCILTS-SNVCTLNVEGN 249
           + +     L S  NV  L +   
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMK 208

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 26/189 (13%), Positives = 64/189 (33%), Gaps = 21/189 (11%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTF----DQNKIESLPKDI-GTLEKLENVSGNCN 133
           L  L++  N       + + +  L  L      + +    + +     L  LE +  + +
Sbjct: 126 LTFLNLLGNPYKTLG-ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 134 LIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDV--LDLSFNRIESIPD 186
            ++     S   + N+ HL L   Q      +      +++ L++   DL       +  
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 187 G-----IGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS-SN 240
           G     I K     + +    +  +   +++   L  L    N   + ++P  I    ++
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN--QLKSVPDGIFDRLTS 302

Query: 241 VCTLNVEGN 249
           +  + +  N
Sbjct: 303 LQKIWLHTN 311

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 80  RTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSG---NCNL 134
             L ++ N+ +         +L  L+ + F  NKI  +    G  E    V+      N 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNR 92

Query: 135 IKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI---- 188
           ++ +    F  L +LK L L  N++       F  L  + +L L  N+I ++  G     
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 189 GKMKVIEMNLNKNQI---CHI 206
             +  +  NL  N     C++
Sbjct: 153 HSLSTL--NLLANPFNCNCYL 171

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           LR ++ S NKI+            +  +    N++E++   +   LE L+ +    N I 
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

Query: 137 ELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
            +   SF  L +++ LSL  NQ+       F  L  L  L+L  N
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 133 NLIKELPLS--FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI- 188
           N    L  +  F KL  L+ ++ S N++       F     ++ + L+ NR+E++   + 
Sbjct: 42  NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101

Query: 189 -GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
            G   +  + L  N+I  +  D       +++L L +N
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 27/150 (18%)

Query: 80  RTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
             + + QN I   P    + Y+ L+ +    N+I  L  D                    
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA------------------- 75

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MKVIE 195
              F  L +L  L L  N++ + P  LF  L  L +L L+ N+I  +     +    +  
Sbjct: 76  ---FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132

Query: 196 MNLNKNQICHISPDI-SECVRLKILRLEEN 224
           ++L  N++  I+    S    ++ + L +N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 26/113 (23%)

Query: 79  LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
           LR +D+S N+IS+   D A   L  L SL    NKI  LPK +                 
Sbjct: 58  LRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSL----------------- 99

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
                F  L +L+ L L+ N++N      F +L +L++L L  N++++I  G 
Sbjct: 100 -----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 79  LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L +L +  NKI++ P  L      L+ L  + NKI  L  D    L  L  +S   N ++
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 137 ELPL-SFSKLHNLKHLSLSQNQLN 159
            +   +FS L  ++ + L+QN   
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS-GNCNLIKE 137
           L  + ++   ++     +     +K LT +     +    I  L  LE +     ++  +
Sbjct: 46  LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 138 LPLSFSKLHNLKHLSLSQNQL-NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
              + S L +L  L +S +   +   T +  L  ++ +DLS+N   +    +  +  ++ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 197 -NLNKNQICHISPDISECVRLKILRLEEN 224
            N+  + +      I +  +L  L     
Sbjct: 164 LNIQFDGVHDYRG-IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKE 137
           ++ L I+    + +   ++    L+ L      + S    ++  L  L  +  + +   +
Sbjct: 68  IKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 138 LPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
             L+  + L  +  + LS N        L  L  L  L++ F+ +          K+ ++
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186

Query: 197 NLNKNQI 203
                 I
Sbjct: 187 YAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 79  LRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVS-GNCNLI 135
           L  L I    ++   + +L+    L  L    +  + S+   I TL K+ ++       I
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 136 KELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI 184
            ++      L  LK L++  + ++ +   + +   L+ L      I   
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 14/130 (10%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
            +   N     +      ++ +++++L +++L+   +    T +    ++  L ++    
Sbjct: 22  FKAYLNGLLGQSSTA--NITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78

Query: 182 ESIPDGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCILTSS 239
            +  + I  +  +  + +    +     P++S    L +L +  +    + +   I T  
Sbjct: 79  TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLP 136

Query: 240 NVCTLNVEGN 249
            V ++++  N
Sbjct: 137 KVNSIDLSYN 146

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 12/177 (6%)

Query: 55  TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE 113
             +++ S++     P +   L    + L +SQN IS+  + D++    L+ L    N+I 
Sbjct: 33  ESMVDYSNRNLTHVPKD---LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89

Query: 114 SLPKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP-TVLF-NLQH 170
           SL   +    + LE +  + N ++ +      + +L+HL LS N  +  P    F NL  
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 171 LDVLDLSFNRIESIPDGI---GKMKVIEMNLNKNQICHISPDISECVRLKILRLEEN 224
           L  L LS  +   +         +  I ++L    I     +  +     +L L  +
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESLP- 116
           ++ +Q F    + +  + A +    +S +      +           L F QN       
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFN-----LQHL 171
           +   TL++L+ +    N +K          N+  L      LN   +  ++      + +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
            VL+LS N +          KV  ++L+ N+I  I  D++    L+ L +  N L
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 28/138 (20%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
              L+ +QN  +       ++ + L++L   +N +++  K     + + ++      +  
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 138 LP------------------LSFSKLH---------NLKHLSLSQNQLNKFPTVLFNLQH 170
           L                   LS + L           +K L L  N++   P  + +LQ 
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474

Query: 171 LDVLDLSFNRIESIPDGI 188
           L  L+++ N+++S+PDG+
Sbjct: 475 LQELNVASNQLKSVPDGV 492

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 79  LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
           LR L +S N+I      +    Q L+ L    N+++++      +  L ++  + N    
Sbjct: 78  LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDV 135

Query: 138 LPLS--FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV--LDLSFNRIESIPDG---IGK 190
           LP+   F  L  L  L LS  +  +   +     HL    LDL    I+        I  
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195

Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250
             V+ +  + N +  +  ++S    L  L+L    L        +   S +       N+
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
           L TLD+S N ++    D        +  L    N +           K++ +  + N I 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM 463

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
            +P   + L  L+ L+++ NQL   P  +F  L  L  + L  N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 131 NCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
           + N I EL +   S L  L+ L LS N++      +F   Q L+ LD+S NR+++I    
Sbjct: 60  SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP 119

Query: 189 GKMKVIEMNLNKNQICHI--SPDISECVRLKILRLEENCL 226
               +  ++L+ N    +    +     +L  L L     
Sbjct: 120 MA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 147 NLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGI-GKMKVIEM-NLNKNQI 203
             K LSLSQN +++     +  L  L VL LS NRI S+   +    + +E  +++ N++
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 204 CHISPDISECVRLKILRLEENCL 226
            +IS        L+ L L  N  
Sbjct: 113 QNISCC--PMASLRHLDLSFNDF 133

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 43/225 (19%), Positives = 76/225 (33%), Gaps = 10/225 (4%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESL 115
           +++ S  G    P +   L      L+ISQN IS+    D+ S   L+ L    N+I+ L
Sbjct: 4   LVDRSKNGLIHVPKD---LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 116 PKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP--TVLFNLQHLD 172
              +    ++LE +  + N + ++        NLKHL LS N  +  P      N+  L 
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 173 VLDLSFNRIESIP-DGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
            L LS   +E      I  + + ++ L   +      D           L          
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 232 PTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLL 276
              +  S          N+  +    +   + + +        L 
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 33/201 (16%), Positives = 78/201 (38%), Gaps = 10/201 (4%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY-QLLKSLTFDQNKIESLPK 117
            +    F      + E+ + +   + + +      +   S       L F  N +     
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 118 DI-GTLEKLENVSGNCNLIKELPLS---FSKLHNLKHLSLSQNQLNKFPT--VLFNLQHL 171
           +  G L +LE +    N +KEL       +++ +L+ L +SQN ++           + L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
             L++S N +          ++  ++L+ N+I  I   + +   L+ L +  N   + ++
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN--QLKSV 459

Query: 232 PTCILTS-SNVCTLNVEGNLF 251
           P  I    +++  + +  N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 23/210 (10%), Positives = 64/210 (30%), Gaps = 12/210 (5%)

Query: 63  QGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL----LKSLTFDQNKIESLPKD 118
               +           L  ++ + N   +    +    +    + ++             
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 119 IGT-LEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLD 175
            GT L+ L       ++        +    N+   + + +       +  + +     LD
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 176 LSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDIS---ECVRLKILRLEENCLAINA 230
            S N +            ++  + L  NQ+  +S       +   L+ L + +N ++ + 
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 231 IPTCILTSSNVCTLNVEGNLFEMKAFQQLD 260
                  + ++ +LN+  N+     F+ L 
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L +L++S N ++           +K L    NKI+S+PK +  LE L+ ++   N +K +
Sbjct: 401 LLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459

Query: 139 PL-SFSKLHNLKHLSLSQNQLN 159
           P   F +L +L+ + L  N  +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWD 481

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 79  LRTLDISQNKISKFPLD-LASYQLLKSLTFDQN-KIESLPKDIGTLEKLENVS----GNC 132
            +TL + +  +   P    ++   +  +    +  ++ L     +   L  V+     N 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNT 90

Query: 133 NLIKELPLS-FSKLHNLKHLSLSQNQLNKFP--TVLFNLQHLDVLDLSFN-RIESIPDGI 188
             +  +      +L  LK L +    L  FP  T +++     +L+++ N  + SIP   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 189 GK---MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP 232
            +    + + + L  N    +        +L  + L +N   +  I 
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKY-LTVID 196

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 88  KISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHN 147
              +    +A+      L      IE +   + TL+  ++++ + N I+++  S S + N
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMEN 71

Query: 148 LKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-NLNKNQICHI 206
           L+ LSL +N + K   +      L+ L +S+N+I S+  GI K+  + +  ++ N+I + 
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW 130

Query: 207 SP--DISECVRLKILRLEENCLAINAIPTC 234
                ++   +L+ L L  N L  +     
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 59  NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
           +      ++    ++ LKA  + L +S N I K    L+  + L+ L+  +N I+ +   
Sbjct: 31  HGMIPPIEKMDATLSTLKA-CKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENL 88

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDL 176
               + LE +  + N I  L     KL NL+ L +S N++  +  +  L  L  L+ L L
Sbjct: 89  DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

Query: 177 SFNRIESIPD 186
           + N + +   
Sbjct: 148 AGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           LR L + +N I K     A    L+ L    N+I SL   I  L  L  +  + N I   
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW 130

Query: 139 P--LSFSKLHNLKHLSLSQNQLNKF-----------PTVLFNLQHLDVLD 175
                 + L  L+ L L+ N L                V+  L +L  LD
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKF 161
             L  D N+   +PK++   + L  +  + N I  L   SFS +  L  L LS N+L   
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 162 PTVLFN-LQHLDVLDLSFNRIESIPDGI 188
           P   F+ L+ L +L L  N I  +P+G 
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGA 121

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 82  LDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPL 140
           L +  N+ +  P +L++Y+ L  +    N+I +L       + +L  +  + N ++ +P 
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 141 -SFSKLHNLKHLSLSQNQLNKFPTVLFN----LQHL 171
            +F  L +L+ LSL  N ++  P   FN    L HL
Sbjct: 96  RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI- 188
           + N    +P   S   +L  + LS N+++      F N+  L  L LS+NR+  IP    
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98

Query: 189 -GKMKVIEMNLNKNQI 203
            G   +  ++L+ N I
Sbjct: 99  DGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 151 LSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISP 208
           L L  NQ    P  L N +HL ++DLS NRI ++ +     M +++ + L+ N++  I P
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 209 DI-SECVRLKILRLEEN 224
                   L++L L  N
Sbjct: 96  RTFDGLKSLRLLSLHGN 112

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI-GTLEKLENVSGNCNLI 135
           + L +  N+I+K       +  L +L       N++ +LP  +  +L +L  +    N +
Sbjct: 43  QILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 136 KELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG 187
             LP + F +L +LK L +  N+L + P  +  L HL  L L  N+++SIP G
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
           + L    N+I  L   +  +L  L+ +    N +  LP+  F  L  L  L L  NQL  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 161 FPTVLFN-LQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQ 202
            P+ +F+ L HL  L +  N++  +P GI ++  +  + L++NQ
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 55  TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQNK 111
           T  ++L   G     D        L  L++  N++      +  +  L  L       N+
Sbjct: 37  TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--FDDLTELGTLGLANNQ 94

Query: 112 IESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-L 168
           + SLP  +   L +L+ +    N +K LP   F +L  LK L L+ NQL   P   F+ L
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 169 QHLDVLDLSFNRIESIPDG 187
            +L  L LS N+++S+P G
Sbjct: 155 TNLQTLSLSTNQLQSVPHG 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 103 KSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
           + L      + +L       L KL  ++ + N ++ L    F  L  L  L L+ NQL  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 161 FPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRL 216
            P  +F +L  LD L L  N+++S+P G+     K+ E+ LN NQ+  I      +   L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 217 KILRLEENCL 226
           + L L  N L
Sbjct: 158 QTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 79  LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
           L TL ++ N+++  PL +      L  L    N+++SLP  +   L KL+ +  N N ++
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 137 ELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
            +P   F KL NL+ LSLS NQL   P   F  L  L  + L  N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 28/168 (16%)

Query: 79  LRTLDISQNKISKFP--------------------LDLASYQLLKSLTFDQNKIESLPKD 118
           L +LD   + I+                       LDL+    L  L  D NK+ +L   
Sbjct: 44  LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-- 101

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
           +  L KL  ++ + N + +L    S+   L +L+ ++N L +    + +   L  LD   
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157

Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
           N+  +  D   + ++  ++ + N+I  +  D+S+   L  L  + N +
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 12/149 (8%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L    NK++   LD+     L  L  D NK+  L   +     L  ++   N + E+
Sbjct: 87  LTYLACDSNKLTN--LDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI 142

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-N 197
            +  S    L  L    N+       +     L  LD SFN+I  +   + + K++   N
Sbjct: 143 DV--SHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLN 197

Query: 198 LNKNQICHISPDISECVRLKILRLEENCL 226
            + N I  +  D+++ ++L  L    N L
Sbjct: 198 CDTNNITKL--DLNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 15/182 (8%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  LD   NK     LD+     L +L    NKI  L  D+   + L  ++ + N I +L
Sbjct: 150 LTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL 206

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               ++   L  L  S N+L +    +  L  L   D S N +  +       K+  ++ 
Sbjct: 207 D--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS-KLTTLHC 261

Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFEMKAFQ 257
            +  +  I  D++   +L              I    +T  + +  L+ +          
Sbjct: 262 IQTDLLEI--DLTHNTQLIYF----QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315

Query: 258 QL 259
           Q 
Sbjct: 316 QN 317

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 13/159 (8%)

Query: 68  FPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN 127
           FPD+ N    V    ++         +       L SL    + I  +   I  L  L  
Sbjct: 15  FPDD-NFASEVAAAFEMQATD----TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTK 68

Query: 128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG 187
           +    N I  L    S+  NL +L+   N+L      +  L  L  L+   N++  +   
Sbjct: 69  LICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS 124

Query: 188 IGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
                +  +N  +N +  I  D+S   +L  L    N  
Sbjct: 125 QNP-LLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 16/189 (8%)

Query: 58  INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
            + S     E           L TL   Q  + +  +DL     L     +  +      
Sbjct: 238 FDCSVNPLTELDVSTLSK---LTTLHCIQTDLLE--IDLTHNTQLIYFQAEGCRKIKEL- 291

Query: 118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
           D+    +L  +      I EL    S+   L +L L+  +L +    + +   L  L   
Sbjct: 292 DVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCV 347

Query: 178 FNRIESIPDGIGKMKVIEMNLNKNQICHISPDI------SECVRLKILRLEENCLAINAI 231
              I+          +      + Q   +  +       +  V   +L    N + I   
Sbjct: 348 NAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407

Query: 232 PTCILTSSN 240
              +   + 
Sbjct: 408 DGGVYDQAT 416

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI-GTLEKLENVSGNCNLI 135
             LD+  N +   P     +  L SLT      NK++SLP  +   L  L  ++ + N +
Sbjct: 31  TYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 136 KELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
           + LP   F KL  LK L+L+ NQL   P  +F+ L  L  L L  N+++S+PDG+
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 55  TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKI 112
           T  ++L     K  P+ + +    L  L +  NK+   P  + + +L  L  L    N++
Sbjct: 30  TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTNQL 88

Query: 113 ESLPKDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQ 169
           +SLP  +   L +L+ ++ N N ++ LP   F KL  LK L L QNQL   P  +F  L 
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 170 HLDVLDLSFN 179
            L  + L  N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 111 KIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFN-LQ 169
              S+P  I       ++  N +L       F +L +L  L L  N+L   P  +FN L 
Sbjct: 18  GRTSVPTGIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 170 HLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCL 226
            L  L+LS N+++S+P+G+     ++ E+ LN NQ+  +   +  +  +LK LRL +N L
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI-GTLEKLENVSGNCNL 134
           L  L ++ N++   P  +  +  L +L      +N+++SLP  +   L  L  ++   N 
Sbjct: 87  LTYLILTGNQLQSLPNGV--FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 135 IKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
           ++ LP   F KL NL  L LS NQL   P  +F+ L  L  L L  N+++S+PDG+
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE 137
           +  +  + + I      +     ++ L    NK+  +       L  L  +    N ++ 
Sbjct: 43  IDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQS 99

Query: 138 LPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI----GKM 191
           LP   F KL NLK L L +NQL   P  +F+ L +L  L+L+ N+++S+P G+      +
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159

Query: 192 KVIEMNLNKNQ 202
              E++L+ NQ
Sbjct: 160 T--ELDLSYNQ 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 79  LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLI 135
           L+ L + +N++   P  +   +L  L  L    N+++SLPK +   L  L  +  + N +
Sbjct: 111 LKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

Query: 136 KELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF----NLQHL 171
           + LP   F KL  LK L L QNQL   P  +F    +LQ++
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
              LI++    ++     + L L   ++     +   L   D +D S N I  + DG   
Sbjct: 5   TAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPL 62

Query: 191 MKVIE-MNLNKNQICHISPDISE-CVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG 248
           ++ ++ + +N N+IC I   + +    L  L L  N L        + +  ++  L +  
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 249 N 249
           N
Sbjct: 123 N 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
            R LD+   KI       A+     ++ F  N+I  L      L +L+ +  N N I  +
Sbjct: 21  DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79

Query: 139 -PLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPD 186
                  L +L  L L+ N L +   +  L +L+ L  L +  N + +   
Sbjct: 80  GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT-LEKLENVSGNCNLIKE 137
              +D S N+I K        + LK+L  + N+I  + + +   L  L  +    N + E
Sbjct: 44  FDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

Query: 138 LP--LSFSKLHNLKHLSLSQNQLNKFP----TVLFNLQHLDVLDLSFNRIE 182
           L      + L +L +L + +N +         V++ +  + VLD    +++
Sbjct: 103 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 12/126 (9%)

Query: 105 LTFDQ-NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT 163
           LT +   +            +   +      I  +    + L     +  S N++ K   
Sbjct: 4   LTAELIEQAAQYTN----AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 164 VLFNLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQICHISPDISE---CVRLKI 218
               L+ L  L ++ NRI  I +G+ +    + E+ L  N +  +  D+        L  
Sbjct: 60  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTY 117

Query: 219 LRLEEN 224
           L +  N
Sbjct: 118 LCILRN 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 103 KSLTFDQNKIESLPKD--IGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLN 159
             L  + N++  +  D   G L  L  +    N +  +  + F    +++ L L +N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 160 KFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
           +    +F  L  L  L+L  N+I  +  G 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGS 121

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 80  RTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
             L ++ N++ +   D    +L  L  L   +N++  +  +       ++ +    N IK
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 137 ELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
           E+    F  LH LK L+L  NQ++      F +L  L  L+L+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 151 LSLSQNQLNKFPT--VLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHI 206
           L L+ N+L +  +  +   L HL  L+L  N++  I      G   + E+ L +N+I  I
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 207 SPDI-SECVRLKILRLEEN 224
           S  +     +LK L L +N
Sbjct: 94  SNKMFLGLHQLKTLNLYDN 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
             L  + NK++SLP  +   L +L  +S + N I+ LP   F KL  L  L L +N+L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 161 FPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
            P  +F  L  L  L L  N+++S+PDGI
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGI 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 80  RTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
             L++  NK+   P  +      L  L+  QN+I+SLP  +   L KL  +  + N ++ 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 138 LPLS-FSKLHNLKHLSLSQNQLNKFPTVLF----NLQHL 171
           LP   F KL  LK L+L  NQL   P  +F    +LQ +
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 69  PDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128
           P  + EL      LD  ++   K     A +  L+ L+     + S+  ++  L KL+ +
Sbjct: 23  PAAVREL-----VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKL 76

Query: 129 SGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIP 185
             + N I     +   KL NL HL+LS N+L    T+  L  L+ L  LDL    + ++ 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 186 D 186
           D
Sbjct: 137 D 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNL 198
            + + +  L  L   ++   K   +     +L+ L L    + S+   + K+  ++ + L
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLEL 78

Query: 199 NKNQICHISPDISE-CVRLKILRLEENCLA 227
           ++N+I      ++E    L  L L  N L 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 9e-09
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 137 ELPLSFSKLHNLKHLSLS-QNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMK 192
           +         NL  L +  Q  L          L  L  L +  + +  +         +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 193 VIEMNLNKNQICHISPDISECVRLKILRLEEN 224
           +  +NL+ N +  +S    + + L+ L L  N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 24/105 (22%)

Query: 79  LRTLDIS-QNKISKFPL-DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
           L  L I  Q  +    L DL     L++LT  ++ +  +  D                  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------------ 74

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
               +F     L  L+LS N L            L  L LS N +
Sbjct: 75  ----AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL- 138
             LD S++   K       ++ L+ L+     + S+  ++  L KL+ +  + N +    
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL 80

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPD 186
            +   K  NL HL+LS N++    T+  L  L++L  LDL    + ++ D
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 147 NLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNLNKNQI 203
           ++K L L  ++ N  K   +    + L+ L      + SI   + K+  ++ + L+ N++
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV 76

Query: 204 CHISPDISE-CVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN------------L 250
                 ++E C  L  L L  N +   +    +    N+ +L++                
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 251 FEMKAFQQLDGYN 263
             +     LDGY+
Sbjct: 137 KLLPQLTYLDGYD 149

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF 161
           KSL        S+P  I T    + +    N I +L    F +L  L  L L  NQL   
Sbjct: 19  KSLA-------SVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 162 PTVLFN-LQHLDVLDLSFNRIESIPDGI 188
           P  +F+ L  L  L L+ N+++SIP G 
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGA 97

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
           + L    N+I  L   +   L +L  +  + N +  LP   F KL  L  LSL+ NQL  
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 161 FPTVLF----NLQHL 171
            P   F    +L H+
Sbjct: 93  IPRGAFDNLKSLTHI 107

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF 161
             L        S+P  I T    + +  N N I +L    F  L NL+ L  + N+L   
Sbjct: 22  IRLA-------SVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 162 PTVLF-NLQHLDVLDLSFNRIESIPDGI 188
           PT +F  L  L  LDL+ N ++SIP G 
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGA 100

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
           + L  + N+I  L   +   L  L+ +  N N +  +P   F KL  L  L L+ N L  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 161 FPTVLF----NLQHL 171
            P   F    +L H+
Sbjct: 96  IPRGAFDNLKSLTHI 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 48/248 (19%), Positives = 81/248 (32%), Gaps = 68/248 (27%)

Query: 47  RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLA-SYQLLKSL 105
           +H    K T +I  S    +  P E    + +   L +       FP        LL  +
Sbjct: 348 KHVNCDKLTTIIESSLNVLE--PAEY---RKMFDRLSV-------FPPSAHIPTILLSLI 395

Query: 106 TFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFS-KLHNLKHLSLSQNQLNKFPTV 164
            FD   I+S    +  + KL   S    L+++ P   +  + ++ +L L     N+    
Sbjct: 396 WFD--VIKSDVMVV--VNKLHKYS----LVEKQPKESTISIPSI-YLELKVKLENE--YA 444

Query: 165 LFNLQHLDVLDLSFNRIESIP---------DG-----IGK-MKVIEMNLNKNQICHISPD 209
           L    H  ++D  +N  ++           D      IG  +K IE          +  D
Sbjct: 445 L----HRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYM-DS 268
               +  KI        A  +I            LN           QQL  Y  Y+ D+
Sbjct: 500 FR-FLEQKIRHDSTAWNASGSI------------LNT---------LQQLKFYKPYICDN 537

Query: 269 ELQRSGLL 276
           + +   L+
Sbjct: 538 DPKYERLV 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 102/292 (34%)

Query: 32  EGTIFVLKMGNSATKRHFETAKKTGVI----NLSHQGFKEF----------PDEMNELKA 77
           +  IF L + N  +           V+     L +Q    +             ++ ++A
Sbjct: 181 DFKIFWLNLKNCNSPE--------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 78  VLRTL--------------DISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLE 123
            LR L              ++   K      +L+   LL   T  +   + L     T  
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILL--TTRFKQVTDFLSAATTTHI 289

Query: 124 KLENVSG---------------NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNL 168
            L++ S                +C   ++LP      +    LS+    +        N 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPR-RLSIIAESIRDGLATWDNW 347

Query: 169 QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISP-DISEC-VRLKILRLEENCL 226
           +H++   L+               +IE +LN      + P +  +   RL +     +  
Sbjct: 348 KHVNCDKLT--------------TIIESSLN-----VLEPAEYRKMFDRLSVFPPSAH-- 386

Query: 227 AINAIPTCILTSSNVCTL--NVEGNLFEMKAFQQLDGYNNYMDSELQRSGLL 276
               IPT +L       +  +V  +   +            + ++L +  L+
Sbjct: 387 ----IPTILL-----SLIWFDVIKSDVMV------------VVNKLHKYSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.16

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=8.5e-28  Score=205.71  Aligned_cols=221  Identities=23%  Similarity=0.313  Sum_probs=168.4

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL   94 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~   94 (277)
                      +++++|++++|.++ .+|+.              +.++++|++|++++|.++.+|..+..+ ++|++|++++|++..+|.
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~--------------l~~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~Ls~n~l~~lp~  144 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQ--------------AFRLSHLQHMTIDAAGLMELPDTMQQF-AGLETLTLARNPLRALPA  144 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSC--------------GGGGTTCSEEEEESSCCCCCCSCGGGG-TTCSEEEEESCCCCCCCG
T ss_pred             cceeEEEccCCCch-hcChh--------------hhhCCCCCEEECCCCCccchhHHHhcc-CCCCEEECCCCccccCcH
Confidence            46777777777776 44443              355778888888888888888777666 788888888888888887


Q ss_pred             cccccCCCcEEeccCCcCc-ccCcccc---------CcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccc
Q psy3567          95 DLASYQLLKSLTFDQNKIE-SLPKDIG---------TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV  164 (277)
Q Consensus        95 ~~~~l~~L~~L~l~~~~i~-~~~~~~~---------~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~  164 (277)
                      .+.++++|++|++++|.+. .+|..+.         .+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence            8888888888888886443 5555544         37888888888888888887788888888888888888888777


Q ss_pred             cCCCCCCCEEEccCCCCc-ccCchhccce-eeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCc
Q psy3567         165 LFNLQHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNV  241 (277)
Q Consensus       165 l~~~~~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  241 (277)
                      ++.+++|++|++++|.+. .+|..++.++ +++|++++|++. .+|..+..+++|++|++++|.+. +.+|..+.+++++
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L  303 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPAN  303 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTT
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch-hhccHHHhhccCc
Confidence            777888888888887665 5676666654 888888887654 67777888888888888888877 6888888888888


Q ss_pred             cEEEcCCCeee
Q psy3567         242 CTLNVEGNLFE  252 (277)
Q Consensus       242 ~~l~l~~n~~~  252 (277)
                      +.+++..+.+.
T Consensus       304 ~~l~l~~~~~~  314 (328)
T 4fcg_A          304 CIILVPPHLQA  314 (328)
T ss_dssp             CEEECCGGGSC
T ss_pred             eEEeCCHHHHH
Confidence            88888776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.3e-27  Score=203.34  Aligned_cols=224  Identities=23%  Similarity=0.295  Sum_probs=186.0

Q ss_pred             CCceeEecCCCCcCC--CCCCceeeeccCCcchhHhhhccCccCEEEeec-CCCC-cCChhHHHhhccccEEEccCCCCC
Q psy3567          15 PSKLTLLLPGKKNRG--LIEGTIFVLKMGNSATKRHFETAKKTGVINLSH-QGFK-EFPDEMNELKAVLRTLDISQNKIS   90 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~-~~i~-~~~~~~~~~~~~L~~L~l~~~~i~   90 (277)
                      .++++|++++|.+.+  .+|+              .|..++.|++|++++ |++. .+|+.+..+ ++|++|++++|++.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~--------------~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~  114 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS--------------SLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVS  114 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG--------------GGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCE
T ss_pred             ceEEEEECCCCCccCCcccCh--------------hHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeC
Confidence            467778888888877  5444              467788999999995 7777 677777666 88999999999988


Q ss_pred             -cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCC-CCCEEEccCCCCc-cCcccc
Q psy3567          91 -KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLH-NLKHLSLSQNQLN-KFPTVL  165 (277)
Q Consensus        91 -~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~-~L~~L~l~~n~l~-~~~~~l  165 (277)
                       .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+. .+|..+
T Consensus       115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence             77888899999999999999988 56888889999999999999987 7788888887 8999999999888 667777


Q ss_pred             CCCCCCCEEEccCCCCcc-cCchhccce-eeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567         166 FNLQHLDVLDLSFNRIES-IPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCT  243 (277)
Q Consensus       166 ~~~~~L~~L~l~~n~l~~-l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (277)
                      ..+. |++|++++|.++. .|..+..++ +++|++++|+++..+..+..+++|++|++++|.++ +.+|..+..+++|++
T Consensus       195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHS  272 (313)
T ss_dssp             GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCE
T ss_pred             hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCE
Confidence            7776 9999999998884 455565554 88999999999876666788899999999999998 678888999999999


Q ss_pred             EEcCCCeeeecc
Q psy3567         244 LNVEGNLFEMKA  255 (277)
Q Consensus       244 l~l~~n~~~~~~  255 (277)
                      |++++|.+++..
T Consensus       273 L~Ls~N~l~~~i  284 (313)
T 1ogq_A          273 LNVSFNNLCGEI  284 (313)
T ss_dssp             EECCSSEEEEEC
T ss_pred             EECcCCcccccC
Confidence            999999988643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=4.3e-27  Score=222.53  Aligned_cols=240  Identities=24%  Similarity=0.353  Sum_probs=168.5

Q ss_pred             CCceeEecCCCCcCCCCCCce------eeeccCCcch----hHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEE
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTI------FVLKMGNSAT----KRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLD   83 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~   83 (277)
                      +++++|++++|.+.+.+|..+      ..+.+.++.+    +..+..+++|++|++++|++. .+|..+..+ ++|++|+
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~  472 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLI  472 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEE
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEE
Confidence            456666666666666555333      3444555433    356667777777777777776 555555544 6777777


Q ss_pred             ccCCCCC-cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc-
Q psy3567          84 ISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN-  159 (277)
Q Consensus        84 l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~-  159 (277)
                      +++|++. .+|..+.++++|++|++++|++. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+. 
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            7777776 55666777777777777777776 45667777777777777777776 56777777777777777777665 


Q ss_pred             cCccc----------------------------------------------------------------------cCCCC
Q psy3567         160 KFPTV----------------------------------------------------------------------LFNLQ  169 (277)
Q Consensus       160 ~~~~~----------------------------------------------------------------------l~~~~  169 (277)
                      .+|..                                                                      ++.++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            33332                                                                      22345


Q ss_pred             CCCEEEccCCCCc-ccCchhccce-eeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567         170 HLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV  246 (277)
Q Consensus       170 ~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  246 (277)
                      +|+.|++++|.++ .+|..++.++ ++.|++++|+++ .+|..++.+++|+.||+++|+++ +.+|..+..++.|++|++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEEC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEEC
Confidence            6777888888777 5777777764 788888888887 77777888888888888888887 678888888888888888


Q ss_pred             CCCeeeeccc
Q psy3567         247 EGNLFEMKAF  256 (277)
Q Consensus       247 ~~n~~~~~~~  256 (277)
                      ++|++++..+
T Consensus       712 s~N~l~g~iP  721 (768)
T 3rgz_A          712 SNNNLSGPIP  721 (768)
T ss_dssp             CSSEEEEECC
T ss_pred             cCCcccccCC
Confidence            8888877543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.4e-27  Score=224.25  Aligned_cols=257  Identities=25%  Similarity=0.340  Sum_probs=210.4

Q ss_pred             CceeEecCCCCcCCCCCC--------ceeeeccCCcch----hHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEE
Q psy3567          16 SKLTLLLPGKKNRGLIEG--------TIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTL   82 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~--------~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L   82 (277)
                      ++++|++++|.+.|.+++        .+..+.+.++.+    +..+..+++|++|++++|+++ .+|..+..+ ++|++|
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  447 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDL  447 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCCEE
Confidence            566666666666555433        344555555433    467889999999999999988 667666666 899999


Q ss_pred             EccCCCCC-cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc
Q psy3567          83 DISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus        83 ~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~  159 (277)
                      ++++|++. .+|..+..+++|++|++++|++. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            99999988 67888999999999999999998 56888999999999999999998 67888999999999999999998


Q ss_pred             -cCccccCCCCCCCEEEccCCCCc-ccCchhcc-----------------------------------------------
Q psy3567         160 -KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGK-----------------------------------------------  190 (277)
Q Consensus       160 -~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~-----------------------------------------------  190 (277)
                       .+|..++.+++|+.|++++|.++ .+|..++.                                               
T Consensus       528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  607 (768)
T 3rgz_A          528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL  607 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred             CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence             67888999999999999999887 56654321                                               


Q ss_pred             -----------------------c-eeeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEE
Q psy3567         191 -----------------------M-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN  245 (277)
Q Consensus       191 -----------------------~-~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  245 (277)
                                             . .++.|++++|+++ .+|..++.+++|+.|++++|.++ +.+|..+..+++|+.|+
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEE
Confidence                                   1 3678999999998 78889999999999999999999 89999999999999999


Q ss_pred             cCCCeeeecc---------ccccccchhhhhhhhhccC
Q psy3567         246 VEGNLFEMKA---------FQQLDGYNNYMDSELQRSG  274 (277)
Q Consensus       246 l~~n~~~~~~---------~~~l~~~~~~~~~~~~~~~  274 (277)
                      +++|.+++..         ++.++...|.+.+.+|..|
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence            9999999753         3444555666666666544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.1e-27  Score=203.21  Aligned_cols=208  Identities=21%  Similarity=0.312  Sum_probs=187.6

Q ss_pred             cCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecc
Q psy3567          52 AKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGN  131 (277)
Q Consensus        52 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~  131 (277)
                      ...++.|+++++.++.+|+.++.+ ++|++|++++|.+..+|..+.++++|++|++++|.+..+|..++.+++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            478999999999999999998886 9999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-cccchhhh---------cCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccC
Q psy3567         132 CNLI-KELPLSFS---------KLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNK  200 (277)
Q Consensus       132 ~n~~-~~l~~~~~---------~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~  200 (277)
                      +|.. ..+|..+.         .+++|++|++++|.+..+|..++.+++|++|++++|.++.+|..++.++ +++|++++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence            8654 46776654         4999999999999999999999999999999999999999998887774 99999999


Q ss_pred             CccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccccccc
Q psy3567         201 NQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDG  261 (277)
Q Consensus       201 n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~  261 (277)
                      |++. .+|..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+..++.+..
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            8866 77888999999999999999988 799999999999999999999887755544433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.9e-26  Score=195.22  Aligned_cols=224  Identities=18%  Similarity=0.266  Sum_probs=191.3

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcC---ChhHHHhhccccEEEccCCCCCc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEF---PDEMNELKAVLRTLDISQNKISK   91 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~i~~   91 (277)
                      +++++|++++|.++. +|.             ..|.++++|++|++++|.++.+   +..+... ++|++|++++|.+..
T Consensus        28 ~~l~~L~L~~n~l~~-i~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~   92 (306)
T 2z66_A           28 SSATRLELESNKLQS-LPH-------------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT   92 (306)
T ss_dssp             TTCCEEECCSSCCCC-CCT-------------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEEE
T ss_pred             CCCCEEECCCCccCc-cCH-------------hHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCcccc
Confidence            466777777776652 222             2367899999999999999855   5666655 999999999999999


Q ss_pred             CCccccccCCCcEEeccCCcCcccCc--cccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCcc--CccccC
Q psy3567          92 FPLDLASYQLLKSLTFDQNKIESLPK--DIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNK--FPTVLF  166 (277)
Q Consensus        92 ~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~--~~~~l~  166 (277)
                      +|..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+... +..+..+++|++|++++|.+..  +|..+.
T Consensus        93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  172 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  172 (306)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence            99889999999999999999998764  788999999999999998855 4568899999999999999985  678888


Q ss_pred             CCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCC-Ccc
Q psy3567         167 NLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSS-NVC  242 (277)
Q Consensus       167 ~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~  242 (277)
                      .+++|++|++++|.++.+ |..+..+ ++++|++++|+++.++. .+..+++|+.|++++|.++ +..|..+..++ +|+
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLA  251 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC-BCSSSSCCCCCTTCC
T ss_pred             hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc-ccCHHHHHhhhccCC
Confidence            999999999999999976 5566665 49999999999998876 5888999999999999998 67778888884 999


Q ss_pred             EEEcCCCeeeec
Q psy3567         243 TLNVEGNLFEMK  254 (277)
Q Consensus       243 ~l~l~~n~~~~~  254 (277)
                      +|++++|++++.
T Consensus       252 ~L~L~~N~~~~~  263 (306)
T 2z66_A          252 FLNLTQNDFACT  263 (306)
T ss_dssp             EEECTTCCEECS
T ss_pred             EEEccCCCeecc
Confidence            999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=5.9e-27  Score=199.22  Aligned_cols=222  Identities=21%  Similarity=0.304  Sum_probs=194.9

Q ss_pred             CCCCceeEecCC-CCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCCCCC
Q psy3567          13 SSPSKLTLLLPG-KKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS   90 (277)
Q Consensus        13 ~~~~l~~l~l~~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~i~   90 (277)
                      ..+.+++|++++ |.+.+.+|.              .|.++++|++|++++|+++ .+|..+..+ ++|++|++++|.+.
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~--------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~  138 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPP--------------AIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALS  138 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCG--------------GGGGCTTCSEEEEEEECCEEECCGGGGGC-TTCCEEECCSSEEE
T ss_pred             CCCCCCeeeCCCCCcccccCCh--------------hHhcCCCCCEEECcCCeeCCcCCHHHhCC-CCCCEEeCCCCccC
Confidence            357899999995 888877665              4577899999999999999 778777777 99999999999998


Q ss_pred             -cCCccccccCCCcEEeccCCcCc-ccCccccCcc-cCceeeccccccc-ccchhhhcCCCCCEEEccCCCCcc-Ccccc
Q psy3567          91 -KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLE-KLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLNK-FPTVL  165 (277)
Q Consensus        91 -~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~-~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~l  165 (277)
                       .+|..+..+++|++|++++|++. .+|..+..+. .|++|++++|.+. .+|..+..+. |++|++++|.+.. .|..+
T Consensus       139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred             CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence             77888999999999999999998 7788999998 9999999999998 6788888887 9999999999984 56778


Q ss_pred             CCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567         166 FNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCT  243 (277)
Q Consensus       166 ~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (277)
                      ..+++|++|++++|.++..+..+... ++++|++++|+++ .+|..+..+++|++|++++|.++ +.+|.. .++++|+.
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~-~~l~~L~~  295 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQG-GNLQRFDV  295 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCCS-TTGGGSCG
T ss_pred             hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc-ccCCCC-ccccccCh
Confidence            88999999999999998554445555 5999999999999 88888999999999999999998 677776 78899999


Q ss_pred             EEcCCCeee
Q psy3567         244 LNVEGNLFE  252 (277)
Q Consensus       244 l~l~~n~~~  252 (277)
                      +++++|+.-
T Consensus       296 l~l~~N~~l  304 (313)
T 1ogq_A          296 SAYANNKCL  304 (313)
T ss_dssp             GGTCSSSEE
T ss_pred             HHhcCCCCc
Confidence            999999743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=2.1e-26  Score=213.58  Aligned_cols=230  Identities=23%  Similarity=0.308  Sum_probs=140.5

Q ss_pred             CCCCceeEecCCCCcCCCCCCce------eeeccCCcc------hhHhhhcc------CccCEEEeecCCCCcCCh--hH
Q psy3567          13 SSPSKLTLLLPGKKNRGLIEGTI------FVLKMGNSA------TKRHFETA------KKTGVINLSHQGFKEFPD--EM   72 (277)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~------~~~~l~~~------~~L~~L~l~~~~i~~~~~--~~   72 (277)
                      ..+++++|++++|.+.+.+|..+      ..+.+.++.      ++..+..+      ++|++|++++|+++.+|+  .+
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence            34678899999999988888644      556666664      44556665      888899999998888887  66


Q ss_pred             HHhhccccEEEccCCCCC-cCCccccccCCCcEEeccCCcCcccCccccCccc-CceeecccccccccchhhhcCC--CC
Q psy3567          73 NELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEK-LENVSGNCNLIKELPLSFSKLH--NL  148 (277)
Q Consensus        73 ~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~n~~~~l~~~~~~l~--~L  148 (277)
                      ..+ ++|++|++++|++. .+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.+..+|..+...+  +|
T Consensus       327 ~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          327 QKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             TTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             ccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence            666 78888888888887 777 677777777777777777766666666666 7777777666665554443322  34


Q ss_pred             CEEEccCC-------------------------------CCccCccccC-CCCCCCEEEccCCCCcccCchhccc-----
Q psy3567         149 KHLSLSQN-------------------------------QLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKM-----  191 (277)
Q Consensus       149 ~~L~l~~n-------------------------------~l~~~~~~l~-~~~~L~~L~l~~n~l~~l~~~~~~~-----  191 (277)
                      ++|++++|                               .+..+|..+. .+++|++|++++|.++.+|......     
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            44444444                               4333333222 2444444444444444444332210     


Q ss_pred             ----eeeEEEccCCccCcCCcCcc--CCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567         192 ----KVIEMNLNKNQICHISPDIS--ECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV  246 (277)
Q Consensus       192 ----~l~~L~l~~n~l~~l~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  246 (277)
                          .+++|++++|+++.+|..+.  .+++|+.|++++|.++  .+|..+.++++|++|++
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEEC
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCC--CcChhhhcCCCCCEEEC
Confidence                34455555555555554443  5555555555555554  24555555555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=4.5e-26  Score=216.32  Aligned_cols=232  Identities=23%  Similarity=0.340  Sum_probs=145.0

Q ss_pred             CCCCceeEecCCCCcCCCCCCce------eeeccCCcc------hhHhhhccC-------ccCEEEeecCCCCcCCh--h
Q psy3567          13 SSPSKLTLLLPGKKNRGLIEGTI------FVLKMGNSA------TKRHFETAK-------KTGVINLSHQGFKEFPD--E   71 (277)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~------~~~~l~~~~-------~L~~L~l~~~~i~~~~~--~   71 (277)
                      ..+++++|++++|.+.+.+|..+      ..+.+..+.      ++..+..++       +|++|++++|+++.+|+  .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            34678899999999988888644      556666664      445555555       88999999998888887  6


Q ss_pred             HHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCccc-CceeecccccccccchhhhcCCC--C
Q psy3567          72 MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEK-LENVSGNCNLIKELPLSFSKLHN--L  148 (277)
Q Consensus        72 ~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~n~~~~l~~~~~~l~~--L  148 (277)
                      +..+ ++|+.|++++|++..+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.+..+|..+..++.  |
T Consensus       569 l~~L-~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          569 LQKM-VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             HTTC-TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             hhcC-CCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence            6666 78888888888888777 777888888888888888777777777777 77777777777666544433321  4


Q ss_pred             CEEEccCC-----------------------------CCccCccccC-CCCCCCEEEccCCCCcccCchhccc-------
Q psy3567         149 KHLSLSQN-----------------------------QLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKM-------  191 (277)
Q Consensus       149 ~~L~l~~n-----------------------------~l~~~~~~l~-~~~~L~~L~l~~n~l~~l~~~~~~~-------  191 (277)
                      +.|++++|                             .+..+|..+. .+++|+.|++++|.++.+|..+...       
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            44444443                             3333333322 3445555555555555444433221       


Q ss_pred             --eeeEEEccCCccCcCCcCcc--CCCCCCEEEcCCCccccCccCccccCCCCccEEEcCC
Q psy3567         192 --KVIEMNLNKNQICHISPDIS--ECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG  248 (277)
Q Consensus       192 --~l~~L~l~~n~l~~l~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  248 (277)
                        .+++|++++|+++.+|..+.  .+++|+.|++++|.++  .+|..+..+++|+.|++++
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS--SFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCS--SCCCGGGGCTTCCEEECCC
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCC--ccchhhhcCCCCCEEECCC
Confidence              34555555555555555444  4555555555555554  2444444555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=7e-27  Score=216.71  Aligned_cols=204  Identities=20%  Similarity=0.278  Sum_probs=145.2

Q ss_pred             hHhhhccCccCEEEeecCCCCc------------------CChhHH--HhhccccEEEccCCCCC-cCCccccccCCCcE
Q psy3567          46 KRHFETAKKTGVINLSHQGFKE------------------FPDEMN--ELKAVLRTLDISQNKIS-KFPLDLASYQLLKS  104 (277)
Q Consensus        46 ~~~l~~~~~L~~L~l~~~~i~~------------------~~~~~~--~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~  104 (277)
                      +..++++++|++|++++|+++.                  +|+.+.  .+ ++|++|++++|++. .+|..+.++++|++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            3567788888888888888887                  787776  66 78888888888765 66777888888888


Q ss_pred             EeccCCc-Ccc--cCccccCc------ccCceeecccccccccch--hhhcCCCCCEEEccCCCCc-cCccccCCCCCCC
Q psy3567         105 LTFDQNK-IES--LPKDIGTL------EKLENVSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLD  172 (277)
Q Consensus       105 L~l~~~~-i~~--~~~~~~~l------~~L~~L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~  172 (277)
                      |++++|+ ++.  +|..++.+      ++|++|++++|.+..+|.  .++.+++|++|++++|.+. .+| .++.+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            8888887 764  66666655      778888888888777777  7777888888888888777 676 666666777


Q ss_pred             EEEccCCCCcccCchhccc-e-eeEEEccCCccCcCCcCccCCC--CCCEEEcCCCccccCccCcccc-------CCCCc
Q psy3567         173 VLDLSFNRIESIPDGIGKM-K-VIEMNLNKNQICHISPDISECV--RLKILRLEENCLAINAIPTCIL-------TSSNV  241 (277)
Q Consensus       173 ~L~l~~n~l~~l~~~~~~~-~-l~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~-------~~~~L  241 (277)
                      +|++++|.++.+|..+..+ + +++|++++|+++.+|..+...+  +|+.|++++|.++ +..|..+.       .+++|
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCE
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCC
Confidence            7777777776666665554 3 6677777777776666655433  6666666666666 45555555       45566


Q ss_pred             cEEEcCCCeee
Q psy3567         242 CTLNVEGNLFE  252 (277)
Q Consensus       242 ~~l~l~~n~~~  252 (277)
                      ++|++++|.++
T Consensus       436 ~~L~Ls~N~l~  446 (636)
T 4eco_A          436 SSINLSNNQIS  446 (636)
T ss_dssp             EEEECCSSCCC
T ss_pred             CEEECcCCccC
Confidence            66666666555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=197.51  Aligned_cols=220  Identities=21%  Similarity=0.280  Sum_probs=185.5

Q ss_pred             CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEec
Q psy3567          33 GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTF  107 (277)
Q Consensus        33 ~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l  107 (277)
                      +.+..+.+.++.+.    ..|..+++|++|++++|.++.+++..+..+++|++|++++|+++.+++ .|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            33444444444432    567889999999999999998887666655999999999999998877 5899999999999


Q ss_pred             cCCcCcccCc-cccCcccCceeeccc-ccccccch-hhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc
Q psy3567         108 DQNKIESLPK-DIGTLEKLENVSGNC-NLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI  184 (277)
Q Consensus       108 ~~~~i~~~~~-~~~~l~~L~~L~l~~-n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l  184 (277)
                      ++|.+..++. .+..+++|++|++++ +.+..++. .|..+++|++|++++|.+..+| .+..+++|++|++++|.++.+
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCcc
Confidence            9999998865 788999999999988 55666665 5899999999999999999987 477899999999999999976


Q ss_pred             -Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         185 -PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       185 -~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                       |..+..+ .+++|++++|+++.++. .+..+++|+.|++++|.++ ...+..+..+++|+.|++++|++...
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCC
Confidence             5556666 49999999999998765 5889999999999999998 44445678899999999999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=6.1e-25  Score=187.99  Aligned_cols=231  Identities=17%  Similarity=0.274  Sum_probs=133.9

Q ss_pred             CceeEecCCCCcCCC---CCCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcC-ChhHHHhhccccEEEccCC
Q psy3567          16 SKLTLLLPGKKNRGL---IEGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEF-PDEMNELKAVLRTLDISQN   87 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~~   87 (277)
                      .++.++++++.+...   +++.+..+.+.++.+.    ..|..+++|++|++++|+++.+ |..+..+ ++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCCCEEECCCC
Confidence            344455555544321   2344455555544432    3466667777777777777655 3333333 66777777777


Q ss_pred             CCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccc---cchhhhcCCCCCEEEccCCCCccCcc
Q psy3567          88 KISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE---LPLSFSKLHNLKHLSLSQNQLNKFPT  163 (277)
Q Consensus        88 ~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~---l~~~~~~l~~L~~L~l~~n~l~~~~~  163 (277)
                      +++.+|..+.  ++|++|++++|.+..++. .+..+++|+++++++|.+..   .+..+..+++|++|++++|.+..+|.
T Consensus       111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~  188 (330)
T 1xku_A          111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  188 (330)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence            7666665443  566666666666665543 45666666666666666642   23456666666666666666666554


Q ss_pred             ccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCC
Q psy3567         164 VLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSN  240 (277)
Q Consensus       164 ~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  240 (277)
                      .+.  ++|++|++++|.++.+ +..+..+ .+++|++++|+++.++. .+..+++|++|++++|.++  .+|..+..+++
T Consensus       189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~  264 (330)
T 1xku_A          189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKY  264 (330)
T ss_dssp             SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSS
T ss_pred             ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCC
Confidence            443  5666666666666644 3334444 36666666666665544 3555666666666666665  55555666666


Q ss_pred             ccEEEcCCCeeee
Q psy3567         241 VCTLNVEGNLFEM  253 (277)
Q Consensus       241 L~~l~l~~n~~~~  253 (277)
                      |++|++++|.++.
T Consensus       265 L~~L~l~~N~i~~  277 (330)
T 1xku_A          265 IQVVYLHNNNISA  277 (330)
T ss_dssp             CCEEECCSSCCCC
T ss_pred             cCEEECCCCcCCc
Confidence            6666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.8e-25  Score=198.02  Aligned_cols=234  Identities=19%  Similarity=0.245  Sum_probs=191.0

Q ss_pred             eEecCCCCcCCC---CCCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc
Q psy3567          19 TLLLPGKKNRGL---IEGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK   91 (277)
Q Consensus        19 ~l~l~~~~~~~~---~~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~   91 (277)
                      .++.++.+++..   +++.+..+.+.++.+.    ..|..+++|++|++++|+++.+++..+..+++|++|++++|+++.
T Consensus        58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred             EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence            344444444321   2344555555554442    567889999999999999998876555555999999999999998


Q ss_pred             CCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeeccc-ccccccch-hhhcCCCCCEEEccCCCCccCccccCC
Q psy3567          92 FPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNC-NLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFN  167 (277)
Q Consensus        92 ~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~-n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~l~~  167 (277)
                      +++. |..+++|++|++++|.+..++. .+..+++|++|++++ +.+..++. .|..+++|++|++++|.+..+| .+..
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~  216 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTP  216 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTT
T ss_pred             cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccc
Confidence            8775 8899999999999999998865 788999999999987 56667765 5889999999999999999886 4778


Q ss_pred             CCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEE
Q psy3567         168 LQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTL  244 (277)
Q Consensus       168 ~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  244 (277)
                      +++|++|++++|.++.+ |..+..+ ++++|++++|+++.++. .+..+++|+.|++++|.++ ...+..+..+++|++|
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEE
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEE
Confidence            89999999999999976 5556666 49999999999997754 5889999999999999998 4444567889999999


Q ss_pred             EcCCCeeeec
Q psy3567         245 NVEGNLFEMK  254 (277)
Q Consensus       245 ~l~~n~~~~~  254 (277)
                      ++++|++...
T Consensus       296 ~L~~Np~~Cd  305 (452)
T 3zyi_A          296 HLHHNPWNCD  305 (452)
T ss_dssp             ECCSSCEECS
T ss_pred             EccCCCcCCC
Confidence            9999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=2e-25  Score=195.30  Aligned_cols=110  Identities=21%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEE
Q psy3567         142 FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKIL  219 (277)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L  219 (277)
                      +..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|.....+ .+++|++++|+++.+|..+..+++|+.|
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  323 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence            44555666666666665544 445555666666666666666555444433 3666666666666666666666666666


Q ss_pred             EcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       220 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      ++++|.++  .++  +..+++|++|++++|++++..
T Consensus       324 ~L~~N~i~--~~~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          324 YLDHNSIV--TLK--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             ECCSSCCC--CCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             ECCCCccc--eeC--chhhccCCEEEcCCCCccchh
Confidence            66666665  232  455666777777777666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=9.5e-25  Score=183.03  Aligned_cols=202  Identities=22%  Similarity=0.283  Sum_probs=168.1

Q ss_pred             cCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccCCc-Cccc-CccccCcccCcee
Q psy3567          52 AKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQNK-IESL-PKDIGTLEKLENV  128 (277)
Q Consensus        52 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~-i~~~-~~~~~~l~~L~~L  128 (277)
                      .+++++|++++++++.+++..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            35789999999999988765444448999999999999866 5578899999999999997 7777 6678889999999


Q ss_pred             eccccccccc-chhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccC
Q psy3567         129 SGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       129 ~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~  204 (277)
                      ++++|.+..+ +..+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..+ .+++|++++|+++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            9999998877 45688899999999999999987654 67889999999999999977664 5555 4999999999999


Q ss_pred             cC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         205 HI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       205 ~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      .+ |..+..+++|+.|++++|.++ +..+..+..+++|++|++++|++...
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccCC
Confidence            76 667888999999999999998 33335688899999999999998853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=9e-25  Score=207.43  Aligned_cols=236  Identities=19%  Similarity=0.325  Sum_probs=175.8

Q ss_pred             CCCceeEecCCCC-cCC-CCCC-------------ceeeeccCCcch---hH--hhhccCccCEEEeecCCCCcCChhHH
Q psy3567          14 SPSKLTLLLPGKK-NRG-LIEG-------------TIFVLKMGNSAT---KR--HFETAKKTGVINLSHQGFKEFPDEMN   73 (277)
Q Consensus        14 ~~~l~~l~l~~~~-~~~-~~~~-------------~~~~l~~~~~~~---~~--~l~~~~~L~~L~l~~~~i~~~~~~~~   73 (277)
                      .+++++|++++|. ++| .+|.             .+..+.+.++.+   +.  .+..+++|++|++++|+++.+| .+.
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~  592 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG  592 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence            4577777777776 776 5553             455555555443   23  5777777777777777777776 444


Q ss_pred             HhhccccEEEccCCCCCcCCccccccCC-CcEEeccCCcCcccCccccC-------------------------------
Q psy3567          74 ELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESLPKDIGT-------------------------------  121 (277)
Q Consensus        74 ~~~~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~~~i~~~~~~~~~-------------------------------  121 (277)
                      .+ ++|+.|++++|++..+|..+.++++ |++|++++|.+..+|..+..                               
T Consensus       593 ~L-~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          593 TN-VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TT-SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             CC-CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            44 6777777777777777766777776 77777777766655543322                               


Q ss_pred             cccCceeecccccccccchhh-hcCCCCCEEEccCCCCccCccccCCCC--------CCCEEEccCCCCcccCchhc--c
Q psy3567         122 LEKLENVSGNCNLIKELPLSF-SKLHNLKHLSLSQNQLNKFPTVLFNLQ--------HLDVLDLSFNRIESIPDGIG--K  190 (277)
Q Consensus       122 l~~L~~L~l~~n~~~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~l~~~~--------~L~~L~l~~n~l~~l~~~~~--~  190 (277)
                      ..+|++|++++|.+..+|..+ ..+++|+.|++++|.+..+|..+....        +|++|++++|.++.+|..++  .
T Consensus       672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~  751 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT  751 (876)
T ss_dssp             CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred             CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence            235777777777777777654 478899999999999998887665432        89999999999999988876  5


Q ss_pred             c-eeeEEEccCCccCcCCcCccCCCCCCEEEcCC------CccccCccCccccCCCCccEEEcCCCeee
Q psy3567         191 M-KVIEMNLNKNQICHISPDISECVRLKILRLEE------NCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       191 ~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      + .++.|++++|+++.+|..+..+++|+.|++++      |.+. +.+|..+.++++|+.|++++|.++
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~L~  819 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL-RQWPTGITTCPSLIQLQIGSNDIR  819 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCCC
T ss_pred             CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccc-ccChHHHhcCCCCCEEECCCCCCC
Confidence            5 49999999999999998888999999999976      6666 688888999999999999999884

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=5.9e-25  Score=188.25  Aligned_cols=233  Identities=18%  Similarity=0.264  Sum_probs=114.2

Q ss_pred             ceeEecCCCCcCCC---CCCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCC
Q psy3567          17 KLTLLLPGKKNRGL---IEGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKI   89 (277)
Q Consensus        17 l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i   89 (277)
                      ++.++++++++...   +++.+..+.+.++.+.    ..|..+++|++|++++|+++.+++..+..+++|++|++++|++
T Consensus        35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  114 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL  114 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence            44455555544311   1233444444443332    3455555566666666655544332222225555666655555


Q ss_pred             CcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccc---cchhhhcC--------------------
Q psy3567          90 SKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE---LPLSFSKL--------------------  145 (277)
Q Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~---l~~~~~~l--------------------  145 (277)
                      ..+|..+.  ++|++|++++|.+..++. .+..+++|++|++++|.+..   .+..+..+                    
T Consensus       115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~  192 (332)
T 2ft3_A          115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP  192 (332)
T ss_dssp             CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC
T ss_pred             CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc
Confidence            55554433  455555555555554433 34555555555555555431   12223333                    


Q ss_pred             CCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcC
Q psy3567         146 HNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLE  222 (277)
Q Consensus       146 ~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~  222 (277)
                      ++|++|++++|.+..++ ..+..+++|++|++++|.++.++. .+..+ .+++|++++|+++.+|..+..+++|+.|+++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence            34555555555555443 344455555555565555554433 23333 2555666666665555555555566666666


Q ss_pred             CCccccCccCccccC------CCCccEEEcCCCeee
Q psy3567         223 ENCLAINAIPTCILT------SSNVCTLNVEGNLFE  252 (277)
Q Consensus       223 ~n~~~~~~~~~~~~~------~~~L~~l~l~~n~~~  252 (277)
                      +|.++ ..-+..+..      .+.++.+++++|++.
T Consensus       273 ~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCCC-ccChhHccccccccccccccceEeecCccc
Confidence            66554 111222222      234555666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2.2e-24  Score=185.66  Aligned_cols=233  Identities=21%  Similarity=0.277  Sum_probs=119.9

Q ss_pred             CCCceeEecCCCCcCCCCC----CceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN   87 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~   87 (277)
                      .+++++|++++|.+++..+    +.+..+.+.++.+.  +.+..+++|++|++++|.++.+++ +..+ ++|+.|++++|
T Consensus        65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l-~~L~~L~l~~n  142 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL-TKMYSLNLGAN  142 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC-TTCCEEECTTC
T ss_pred             cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC-CceeEEECCCC
Confidence            4456666666666554321    33344444444332  345566666666666666665554 3333 55555555555


Q ss_pred             CCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch---------------------hhhcCC
Q psy3567          88 KISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL---------------------SFSKLH  146 (277)
Q Consensus        88 ~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~---------------------~~~~l~  146 (277)
                      .....++.+..+++|++|++++|.+..++. +..+++|+++++++|.+..++.                     .+..++
T Consensus       143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  221 (347)
T 4fmz_A          143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMT  221 (347)
T ss_dssp             TTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             CCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCC
Confidence            333222334455555555555555444332 4445555555555555444332                     134444


Q ss_pred             CCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCc
Q psy3567         147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENC  225 (277)
Q Consensus       147 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~  225 (277)
                      +|++|++++|.+..++. +..+++|++|++++|.++.++. +..+ ++++|++++|+++.++ .+..+++|+.|++++|.
T Consensus       222 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred             cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChh-HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc
Confidence            55555555555554433 4455555555555555554432 2222 3556666666655552 34555666666666666


Q ss_pred             cccCccCccccCCCCccEEEcCCCeeee
Q psy3567         226 LAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++ +..+..+..+++|++|++++|+++.
T Consensus       299 l~-~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          299 LG-NEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CC-GGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CC-CcChhHhhccccCCEEEccCCcccc
Confidence            55 3444555566666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=4.8e-26  Score=196.66  Aligned_cols=219  Identities=16%  Similarity=0.207  Sum_probs=142.5

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc--cccCccc
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK--DIGTLEK  124 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~  124 (277)
                      .|..+++|++|++++|+++.+++..+..+++|++|++++|+++.++.. +.++++|++|++++|.+..++.  .+..+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            456666666666666666655443233236666666666666666554 5666666666666666666654  5566666


Q ss_pred             Cceeecccc-cccccc-hhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhcc-c-eeeEEEcc
Q psy3567         125 LENVSGNCN-LIKELP-LSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIGK-M-KVIEMNLN  199 (277)
Q Consensus       125 L~~L~l~~n-~~~~l~-~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~~-~-~l~~L~l~  199 (277)
                      |++|++++| .+..++ ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|..... . .+++|+++
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence            666666666 344443 3466666666666666666644 45555666666666666666655544321 2 36666666


Q ss_pred             CCccCc--------------------------------CCcCccCCCCCCEEEcCCCccccCccCcc-ccCCCCccEEEc
Q psy3567         200 KNQICH--------------------------------ISPDISECVRLKILRLEENCLAINAIPTC-ILTSSNVCTLNV  246 (277)
Q Consensus       200 ~n~l~~--------------------------------l~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l~l  246 (277)
                      +|+++.                                +|..+..+++|+.|++++|.++  .+|.. +..+++|++|++
T Consensus       231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred             CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHHhcCCCCCEEEe
Confidence            666654                                4445678899999999999998  67776 578999999999


Q ss_pred             CCCeeeecc--ccccccchhhhhh
Q psy3567         247 EGNLFEMKA--FQQLDGYNNYMDS  268 (277)
Q Consensus       247 ~~n~~~~~~--~~~l~~~~~~~~~  268 (277)
                      ++|++++..  ++.+..+.+....
T Consensus       309 ~~N~~~~~~~~l~~l~~~~~~~~~  332 (353)
T 2z80_A          309 HTNPWDCSCPRIDYLSRWLNKNSQ  332 (353)
T ss_dssp             CSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred             eCCCccCcCCCcHHHHHHHHhccc
Confidence            999999764  5555555544433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=2.6e-24  Score=184.06  Aligned_cols=232  Identities=21%  Similarity=0.319  Sum_probs=196.1

Q ss_pred             CCceeEecCCCCcCCCCC------CceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +.++.|++++|.+++..+      +.+..+.+.++.+    +..|..+++|++|++++|+++.+|..++   ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence            678899999999887755      3446677776554    3678999999999999999999997654   78999999


Q ss_pred             cCCCCCcCCc-cccccCCCcEEeccCCcCcc---cCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCcc
Q psy3567          85 SQNKISKFPL-DLASYQLLKSLTFDQNKIES---LPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNK  160 (277)
Q Consensus        85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~  160 (277)
                      ++|++..++. .+.++++|++|++++|.+..   .+..+..+++|++|++++|.+..+|..+.  ++|++|++++|.+..
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc
Confidence            9999998776 48999999999999999873   36678899999999999999998886654  799999999999997


Q ss_pred             C-ccccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccC-cccc
Q psy3567         161 F-PTVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP-TCIL  236 (277)
Q Consensus       161 ~-~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~  236 (277)
                      + +..+..+++|++|++++|.++.++. .+..+ .+++|++++|+++.+|..+..+++|++|++++|.++  .++ ..+.
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~--~~~~~~f~  284 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS--AIGSNDFC  284 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC--CCCTTSSS
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC--ccChhhcC
Confidence            6 5678889999999999999997654 55555 499999999999999999999999999999999998  333 3343


Q ss_pred             C------CCCccEEEcCCCeeee
Q psy3567         237 T------SSNVCTLNVEGNLFEM  253 (277)
Q Consensus       237 ~------~~~L~~l~l~~n~~~~  253 (277)
                      .      .+.++.+++++|++..
T Consensus       285 ~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          285 PPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CcccccccccccceEeecCcccc
Confidence            2      3689999999998864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=6.8e-25  Score=202.06  Aligned_cols=110  Identities=21%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEE
Q psy3567         142 FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKIL  219 (277)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L  219 (277)
                      +..+++|+.|++++|.+..+ |..++.+++|+.|++++|.++.+|.....+ .+++|++++|.++.+|..+..+++|+.|
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  329 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence            45556666666666666644 445566666667777666666665555444 3666777777777666666666677777


Q ss_pred             EcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       220 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      ++++|.++  .++  +..+++|+.|++++|++++..
T Consensus       330 ~L~~N~l~--~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          330 YLDHNSIV--TLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             ECCSSCCC--CCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             ECCCCCCC--CcC--hhhcCCCCEEEeeCCCCCChh
Confidence            77777665  222  455667777777777776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=6.5e-25  Score=196.84  Aligned_cols=240  Identities=22%  Similarity=0.256  Sum_probs=173.6

Q ss_pred             CCceeEecCCCCcCCCCCC------ceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIEG------TIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +.++.|++++|.+++..+.      .+..+.+.++.+    +..|.++++|++|++++|+++.+|+..+..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            5788899999988876553      345666666544    367888899999999999999888765554588999999


Q ss_pred             cCCCCCcC-CccccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccC
Q psy3567          85 SQNKISKF-PLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKF  161 (277)
Q Consensus        85 ~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~  161 (277)
                      ++|++..+ +..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            99988855 44688888999999999888866 4578888888888888888887764 477788888888888777655


Q ss_pred             cc-ccCCCCC------------------------CCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCC
Q psy3567         162 PT-VLFNLQH------------------------LDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISEC  213 (277)
Q Consensus       162 ~~-~l~~~~~------------------------L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~  213 (277)
                      +. .+..+++                        |++|++++|.++.+|.. +..+ .+++|++++|+++.++.. +..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            33 3444444                        44555555555555532 3333 377777777777766543 6677


Q ss_pred             CCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         214 VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       214 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      ++|+.|++++|.++ +..|..+..+++|++|++++|.++...
T Consensus       272 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~  312 (477)
T 2id5_A          272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLE  312 (477)
T ss_dssp             TTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred             ccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeC
Confidence            77777777777776 455667777788888888888776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.2e-24  Score=183.02  Aligned_cols=200  Identities=25%  Similarity=0.363  Sum_probs=173.2

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN  127 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~  127 (277)
                      +++++++++++++++.++.+|+.+.   ++++.|++++|.+..++ ..+..+++|++|++++|.+..++.. +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            5667889999999999999987653   67999999999998664 4688999999999999999887654 78899999


Q ss_pred             eecccccccccchhhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccC
Q psy3567         128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~  204 (277)
                      |++++|.+..+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|... ..+ ++++|++++|+++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99999999999888889999999999999999886 45778999999999999999887664 344 5999999999999


Q ss_pred             cCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         205 HISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       205 ~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      .+|.. +..+++|+.|++++|.++  .+|..+...++|+.+++++|++...
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCccCc
Confidence            99876 577899999999999997  7888888888999999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=4.3e-24  Score=183.76  Aligned_cols=230  Identities=19%  Similarity=0.296  Sum_probs=176.1

Q ss_pred             CCCCceeEecCCCCcCCCCC----CceeeeccCCcch---hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEcc
Q psy3567          13 SSPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSAT---KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDIS   85 (277)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~   85 (277)
                      ..+++++|++++|.+.+..+    +.+..+.+..+..   ...+..+++|++|++++|.+..+++ +..+ ++|++|+++
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l-~~L~~L~l~  185 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL-TDLYSLSLN  185 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC-TTCSEEECT
T ss_pred             CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccC-CCCCEEEcc
Confidence            34566666666666554422    3334444444322   2446777777778888777776665 3344 778888888


Q ss_pred             CCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCcccc
Q psy3567          86 QNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL  165 (277)
Q Consensus        86 ~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l  165 (277)
                      +|++..++. +..+++|+++++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+ +.+
T Consensus       186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~  261 (347)
T 4fmz_A          186 YNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAV  261 (347)
T ss_dssp             TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGG
T ss_pred             CCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhH
Confidence            888777665 7778888888888888876654 7888999999999999998876 88999999999999999987 467


Q ss_pred             CCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC-cCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567         166 FNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCILTSSNVCT  243 (277)
Q Consensus       166 ~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (277)
                      ..+++|++|++++|.++.++. +..+ .+++|++++|+++..+ ..+..+++|+.|++++|+++  .++. +..+++|++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~-~~~l~~L~~  337 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT--DIRP-LASLSKMDS  337 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC--CCGG-GGGCTTCSE
T ss_pred             hcCCCcCEEEccCCccCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc--cccC-hhhhhccce
Confidence            789999999999999998754 4444 5999999999999665 45889999999999999998  3333 888999999


Q ss_pred             EEcCCCeee
Q psy3567         244 LNVEGNLFE  252 (277)
Q Consensus       244 l~l~~n~~~  252 (277)
                      +++++|.++
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=195.00  Aligned_cols=243  Identities=20%  Similarity=0.249  Sum_probs=171.9

Q ss_pred             CCCCCCceeEecCCCCcCCCCCC------ceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhcccc
Q psy3567          11 DPSSPSKLTLLLPGKKNRGLIEG------TIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLR   80 (277)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~   80 (277)
                      +...+++++|++++|.+++..|.      .+..+.+.++.+.    ..|..+++|++|++++|++..+++..+..+++|+
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            33456778888888877766543      3455556555442    3466777778888887777765444334347777


Q ss_pred             EEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccch-hhhc-------------
Q psy3567          81 TLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPL-SFSK-------------  144 (277)
Q Consensus        81 ~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~-~~~~-------------  144 (277)
                      +|++++|.+..++ ..|..+++|++|++++|.+..++. .+..+++|+.|++++|.+..++. .+..             
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            7777777776543 356777777777777777766543 45566666666666655554322 2333             


Q ss_pred             -----------CCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcC-CcC
Q psy3567         145 -----------LHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHI-SPD  209 (277)
Q Consensus       145 -----------l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l-~~~  209 (277)
                                 ..+|++|++++|.+..+|. .+..+++|++|++++|.++.++.. +..+ ++++|++++|+++.+ +..
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA  291 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred             cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence                       3366677777777777763 577899999999999999977654 4444 599999999999977 456


Q ss_pred             ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       210 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      +..+++|+.|++++|.++ ...+..+..+++|++|++++|++.+.
T Consensus       292 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          292 FRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             BTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             hcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccCc
Confidence            899999999999999998 34345678899999999999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=2.1e-24  Score=192.29  Aligned_cols=132  Identities=23%  Similarity=0.284  Sum_probs=104.0

Q ss_pred             ccCceeeccccccccc-chhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEc
Q psy3567         123 EKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNL  198 (277)
Q Consensus       123 ~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l  198 (277)
                      ++|+++++++|.+..+ |..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.+ +..+..+ .+++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            3456666666665543 45678888999999999998876 45777889999999999999876 4445555 4999999


Q ss_pred             cCCccCcC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         199 NKNQICHI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       199 ~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      ++|+++.+ |..+..+++|++|++++|.++ +..+..+..+++|++|++++|++++..
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCC
Confidence            99999977 556889999999999999998 333345678999999999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=1.5e-24  Score=193.21  Aligned_cols=238  Identities=18%  Similarity=0.244  Sum_probs=158.9

Q ss_pred             CCceeEecCCCCcCCCCCCc------eeeeccCCcch-----hHhhhccCccCEEEeecCCCCcC-ChhHHHhhccccEE
Q psy3567          15 PSKLTLLLPGKKNRGLIEGT------IFVLKMGNSAT-----KRHFETAKKTGVINLSHQGFKEF-PDEMNELKAVLRTL   82 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~------~~~l~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L   82 (277)
                      +++++|++++|.+++..|..      +.++.+.++..     +..|..+++|++|++++|+++.+ |..+..+ ++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL-ANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC-TTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc-ccCCEE
Confidence            56777888888777665543      34555555533     24577777888888888877755 3334444 777777


Q ss_pred             EccCCCCCc-CCcc--ccccCCCcEEeccCCcCccc-Ccc-ccCcccCceeecccccccccc-hhhhc------------
Q psy3567          83 DISQNKISK-FPLD--LASYQLLKSLTFDQNKIESL-PKD-IGTLEKLENVSGNCNLIKELP-LSFSK------------  144 (277)
Q Consensus        83 ~l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~i~~~-~~~-~~~l~~L~~L~l~~n~~~~l~-~~~~~------------  144 (277)
                      ++++|+++. ++..  +.++++|++|++++|.+..+ |.. +..+++|++|++++|.+..++ ..+..            
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            777777763 2332  66777777777777777765 333 666777777777776665332 11211            


Q ss_pred             ----------------------CC--------------------------------------------------------
Q psy3567         145 ----------------------LH--------------------------------------------------------  146 (277)
Q Consensus       145 ----------------------l~--------------------------------------------------------  146 (277)
                                            ++                                                        
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence                                  12                                                        


Q ss_pred             -------CCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCC-cCccCCCC
Q psy3567         147 -------NLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHIS-PDISECVR  215 (277)
Q Consensus       147 -------~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~  215 (277)
                             +|++|++++|.+..+ |..+..+++|++|++++|.++.+ |..+..+ .+++|++++|+++.++ ..+..+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence                   344444444444432 44566778888888888888865 4455555 4888888888888764 45778888


Q ss_pred             CCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         216 LKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      |++|++++|.++ +..|..+..+++|++|++++|.++..
T Consensus       349 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          349 LEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             CCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCEEECCCCccc-ccChhhccccccccEEECCCCccccC
Confidence            888888888887 45577788888888888888888753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=2.8e-24  Score=184.10  Aligned_cols=233  Identities=20%  Similarity=0.300  Sum_probs=183.7

Q ss_pred             CCceeEecCCCCcCCCCCC------ceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIEG------TIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +.++.|++++|.+++..+.      .+..+.+.++.+    +..|..+++|++|++++|+++.+|+.++   ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence            5789999999988876553      346666766554    3678899999999999999999987654   68999999


Q ss_pred             cCCCCCcCCcc-ccccCCCcEEeccCCcCcc---cCccccCc--------------------ccCceeecccccccccc-
Q psy3567          85 SQNKISKFPLD-LASYQLLKSLTFDQNKIES---LPKDIGTL--------------------EKLENVSGNCNLIKELP-  139 (277)
Q Consensus        85 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~---~~~~~~~l--------------------~~L~~L~l~~n~~~~l~-  139 (277)
                      ++|++..++.. +.++++|++|++++|.+..   .+..+..+                    ++|++|++++|.+..++ 
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH
Confidence            99999987764 8889999999999988852   23333332                    46677777777777665 


Q ss_pred             hhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcC-ccC----
Q psy3567         140 LSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISE----  212 (277)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~-l~~----  212 (277)
                      ..+..+++|++|++++|.+..++. .+..+++|++|++++|.++.+|..+..++ +++|++++|+++.++.. +..    
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG  290 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence            568899999999999999998764 67789999999999999999999887775 99999999999988764 433    


Q ss_pred             --CCCCCEEEcCCCccccC-ccCccccCCCCccEEEcCCCe
Q psy3567         213 --CVRLKILRLEENCLAIN-AIPTCILTSSNVCTLNVEGNL  250 (277)
Q Consensus       213 --~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~l~l~~n~  250 (277)
                        .+.|+.+++++|++... ..|..+..+++++.+++++|.
T Consensus       291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence              36799999999998633 334568889999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.2e-24  Score=200.47  Aligned_cols=241  Identities=17%  Similarity=0.144  Sum_probs=200.5

Q ss_pred             CCCCCCCceeEecCCCCcCCCCC----CceeeeccCCcch--hHhhhccCccCEEEeecCCCCcC---ChhHHHhhcccc
Q psy3567          10 WDPSSPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSAT--KRHFETAKKTGVINLSHQGFKEF---PDEMNELKAVLR   80 (277)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~   80 (277)
                      +++..+++++|++++|.+ +.+|    +.+..+.+..+..  ...+..+++|++|++++|+++.+   |..+..+ ++|+
T Consensus       302 ~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~  379 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLR  379 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCC
T ss_pred             hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC-Cccc
Confidence            455566888888888888 5665    2334444444422  23567889999999999999865   6666555 8999


Q ss_pred             EEEccCCCCCcCCccccccCCCcEEeccCCcCcccC--ccccCcccCceeecccccccc-cchhhhcCCCCCEEEccCCC
Q psy3567          81 TLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP--KDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQ  157 (277)
Q Consensus        81 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~  157 (277)
                      +|++++|.+..+|..+..+++|++|++++|.+...+  ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.
T Consensus       380 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             EEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             EeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence            999999999988888999999999999999998764  478899999999999999885 56678999999999999999


Q ss_pred             Ccc--CccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccccCccC
Q psy3567         158 LNK--FPTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNKNQICHI-SPDISECVRLKILRLEENCLAINAIP  232 (277)
Q Consensus       158 l~~--~~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~  232 (277)
                      +..  +|..+..+++|++|++++|.++.+ |..+..++ +++|++++|+++.+ |..+..+++|+.|++++|.++  .+|
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p  537 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSK  537 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEE
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccC
Confidence            985  677888999999999999999965 55566664 99999999999976 667999999999999999997  788


Q ss_pred             ccccCCC-CccEEEcCCCeeeec
Q psy3567         233 TCILTSS-NVCTLNVEGNLFEMK  254 (277)
Q Consensus       233 ~~~~~~~-~L~~l~l~~n~~~~~  254 (277)
                      ..+..++ +|+++++++|++.+.
T Consensus       538 ~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          538 GILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             SCGGGSCTTCCEEECCSCCCCCS
T ss_pred             HhHhhhcccCcEEEccCCCcccC
Confidence            8888887 599999999999863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.9e-25  Score=189.82  Aligned_cols=233  Identities=18%  Similarity=0.140  Sum_probs=184.7

Q ss_pred             CCceeEecCCCCcCCCCCCc----eeeeccCCcch-----hHhhh-------ccCccCEEEeecCCCC-cCChhHH-Hhh
Q psy3567          15 PSKLTLLLPGKKNRGLIEGT----IFVLKMGNSAT-----KRHFE-------TAKKTGVINLSHQGFK-EFPDEMN-ELK   76 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~----~~~l~~~~~~~-----~~~l~-------~~~~L~~L~l~~~~i~-~~~~~~~-~~~   76 (277)
                      ++++++++++|.+  .+|.+    +..+.+..+.+     +..+.       .+++|++|++++|+++ .+|..++ ...
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            4567788888887  55543    33444444333     23333       6899999999999998 6777652 334


Q ss_pred             ccccEEEccCCCCCcCCcccccc-----CCCcEEeccCCcCcccC-ccccCcccCceeecccccccc---cchhh--hcC
Q psy3567          77 AVLRTLDISQNKISKFPLDLASY-----QLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKE---LPLSF--SKL  145 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l-----~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~---l~~~~--~~l  145 (277)
                      ++|++|++++|+++.+|..+..+     ++|++|++++|.+..++ ..++.+++|++|++++|.+..   ++..+  ..+
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            89999999999999887777777     89999999999999876 689999999999999998653   34444  889


Q ss_pred             CCCCEEEccCCCCccCc---cc-cCCCCCCCEEEccCCCCcccC--chhccc-eeeEEEccCCccCcCCcCccCCCCCCE
Q psy3567         146 HNLKHLSLSQNQLNKFP---TV-LFNLQHLDVLDLSFNRIESIP--DGIGKM-KVIEMNLNKNQICHISPDISECVRLKI  218 (277)
Q Consensus       146 ~~L~~L~l~~n~l~~~~---~~-l~~~~~L~~L~l~~n~l~~l~--~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~  218 (277)
                      ++|++|++++|.+..++   .. +..+++|++|++++|.++..+  .....+ .+++|++++|+++.+|..+.  ++|++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~  278 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV  278 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence            99999999999998543   23 346799999999999999644  223333 59999999999999998876  89999


Q ss_pred             EEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       219 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      |++++|+++  .+|. +..+++|++|++++|++++.
T Consensus       279 L~Ls~N~l~--~~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          279 LDLSYNRLD--RNPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EECCSSCCC--SCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             EECCCCCCC--CChh-HhhCCCCCEEeccCCCCCCC
Confidence            999999998  4566 88999999999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.6e-25  Score=188.54  Aligned_cols=216  Identities=21%  Similarity=0.260  Sum_probs=174.1

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP   93 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~   93 (277)
                      .+++++|++++|.+++..+              ..|..+++|++|++++|.++.+++ +..+ ++|++|++++|+++.++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l-~~L~~L~Ls~n~l~~l~   96 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISA--------------ADLAPFTKLELLNLSSNVLYETLD-LESL-STLRTLDLNNNYVQELL   96 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCH--------------HHHTTCTTCCEEECTTSCCEEEEE-ETTC-TTCCEEECCSSEEEEEE
T ss_pred             CCCCCEEECcCCccCcCCH--------------HHhhCCCcCCEEECCCCcCCcchh-hhhc-CCCCEEECcCCcccccc
Confidence            3467778888887765432              356778888888888888886665 4444 88888888888877655


Q ss_pred             ccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCc-ccc-CCCCC
Q psy3567          94 LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFP-TVL-FNLQH  170 (277)
Q Consensus        94 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~l-~~~~~  170 (277)
                      .    .++|++|++++|++..++..  .+++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+ ..+++
T Consensus        97 ~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           97 V----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             E----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             C----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence            3    37888888888888876543  36789999999999987754 6888999999999999998763 444 36889


Q ss_pred             CCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCe
Q psy3567         171 LDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL  250 (277)
Q Consensus       171 L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  250 (277)
                      |++|++++|.++.++......++++|++++|+++.+|..+..+++|+.|++++|.++  .+|..+..+++|+.|++++|+
T Consensus       171 L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCC
T ss_pred             CCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCC
Confidence            999999999999776555444699999999999999888989999999999999997  678888899999999999999


Q ss_pred             eee
Q psy3567         251 FEM  253 (277)
Q Consensus       251 ~~~  253 (277)
                      ++.
T Consensus       249 ~~~  251 (317)
T 3o53_A          249 FHC  251 (317)
T ss_dssp             CBH
T ss_pred             ccC
Confidence            983

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.6e-24  Score=183.36  Aligned_cols=203  Identities=18%  Similarity=0.214  Sum_probs=177.3

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC---CccccccCCCcEEeccCCcCcccCccccCcccCceee
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF---PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS  129 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  129 (277)
                      +++++|++++|+++.+|+.++..+++|++|++++|+++.+   +..+..+++|++|++++|.+..++..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            5789999999999999987655559999999999999855   5667789999999999999999998899999999999


Q ss_pred             cccccccccch--hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcc--cCchhccce-eeEEEccCCcc
Q psy3567         130 GNCNLIKELPL--SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIES--IPDGIGKMK-VIEMNLNKNQI  203 (277)
Q Consensus       130 l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~--l~~~~~~~~-l~~L~l~~n~l  203 (277)
                      +++|.+..++.  .+..+++|++|++++|.+... +..+..+++|++|++++|.++.  +|..+..++ +++|++++|++
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            99999998764  689999999999999999855 5567789999999999999985  677777764 99999999999


Q ss_pred             CcC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeeccc
Q psy3567         204 CHI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAF  256 (277)
Q Consensus       204 ~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  256 (277)
                      +.+ |..+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++...
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCH
Confidence            987 556889999999999999998 3444578889999999999999987443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=4.2e-24  Score=181.23  Aligned_cols=198  Identities=17%  Similarity=0.307  Sum_probs=156.7

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN  127 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~  127 (277)
                      .+.++++|++|+++++.++.++ .+..+ ++|++|++++|++..+++ +..+++|++|++++|.+..++ .+..+++|++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l-~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIE-GVQYL-NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             cHHHcCCcCEEEeeCCCccCch-hhhcc-CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence            3456778888888888888876 34444 888888888888887777 888888888888888887765 5778888888


Q ss_pred             eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcC
Q psy3567         128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHI  206 (277)
Q Consensus       128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l  206 (277)
                      |++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+ ++++|++++|+++.+
T Consensus       112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence            8888888887764 7888888888888888887765 6778888888888888887766 4444 488888888888877


Q ss_pred             CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeeccc
Q psy3567         207 SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAF  256 (277)
Q Consensus       207 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  256 (277)
                      +. +..+++|++|++++|.++  .++ .+..+++|++|++++|+++....
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             hh-hcCCCCCCEEEccCCccC--ccc-cccCCCCCCEEEccCCeeecCCe
Confidence            76 777888888888888887  344 37788888888888888876433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4e-24  Score=196.95  Aligned_cols=238  Identities=18%  Similarity=0.258  Sum_probs=174.3

Q ss_pred             CCceeEecCCCCcCCCCC------CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      .+++.+++++|.+....+      +.+..+.+.++.+.    ..|+.++.|++|++++|.++.+|+..+..+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            456777777777665433      34456666655443    46788888888888888888887766554588888888


Q ss_pred             cCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccchhhhcCCC---------------
Q psy3567          85 SQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPLSFSKLHN---------------  147 (277)
Q Consensus        85 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~---------------  147 (277)
                      ++|.+..+|+. |.++++|++|++++|.+..++. .++.+++|++|++++|.+..++  +..+++               
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccccc
Confidence            88888887775 5888888888888888887644 6888888888888888877553  222222               


Q ss_pred             -------------------------CCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccC
Q psy3567         148 -------------------------LKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNK  200 (277)
Q Consensus       148 -------------------------L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~  200 (277)
                                               |+.|++++|.+... ..+..+++|++|++++|.++.+ |..++.++ ++.|++++
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence                                     33333333333332 3456678888888888888854 66666664 88899999


Q ss_pred             CccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccc
Q psy3567         201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ  257 (277)
Q Consensus       201 n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  257 (277)
                      |+++.+|..+..+++|+.|++++|.++  .+|..+..+++|+.|++++|.++...+.
T Consensus       288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~~~  342 (597)
T 3oja_B          288 NRLVALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLKLS  342 (597)
T ss_dssp             SCCCEEECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred             CCCCCCCcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcChh
Confidence            999888888888889999999999887  6788888889999999999988765433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=5.7e-24  Score=186.01  Aligned_cols=238  Identities=18%  Similarity=0.258  Sum_probs=172.0

Q ss_pred             CCceeEecCCCCcCCCCC------CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      ++++.++++++.++...+      +.+..+.+..+.+.    ..|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            577788888887665433      34556666665443    46788889999999999988887665444488999999


Q ss_pred             cCCCCCcCCcc-ccccCCCcEEeccCCcCcccC-ccccCcccCceeecccccccccchhhhcCC----------------
Q psy3567          85 SQNKISKFPLD-LASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELPLSFSKLH----------------  146 (277)
Q Consensus        85 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~----------------  146 (277)
                      ++|+++.+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.+..++  +..++                
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEE
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccC
Confidence            99988888776 588899999999999888764 46888889999999888877553  22222                


Q ss_pred             ------------------------CCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccC
Q psy3567         147 ------------------------NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNK  200 (277)
Q Consensus       147 ------------------------~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~  200 (277)
                                              +|+.|++++|.+... ..+..+++|++|++++|.++.+ |..+..++ +++|++++
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence                                    233344444444333 2355667788888888887754 55555554 88888888


Q ss_pred             CccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccc
Q psy3567         201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ  257 (277)
Q Consensus       201 n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  257 (277)
                      |+++.++..+..+++|++|++++|.++  .+|..+..+++|++|++++|.++...+.
T Consensus       282 n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~  336 (390)
T 3o6n_A          282 NRLVALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLKLS  336 (390)
T ss_dssp             SCCCEEECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred             CcCcccCcccCCCCCCCEEECCCCcce--ecCccccccCcCCEEECCCCccceeCch
Confidence            888888777777888888888888886  6677777788888888888887764433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.6e-25  Score=196.28  Aligned_cols=217  Identities=22%  Similarity=0.279  Sum_probs=180.3

Q ss_pred             CCCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC
Q psy3567          13 SSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF   92 (277)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~   92 (277)
                      ..+++++|++++|.+++..|.              .|..+++|++|++++|.++..++ +..+ ++|++|++++|.++.+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~--------------~~~~l~~L~~L~Ls~N~l~~~~~-l~~l-~~L~~L~Ls~N~l~~l   95 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAA--------------DLAPFTKLELLNLSSNVLYETLD-LESL-STLRTLDLNNNYVQEL   95 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGG--------------GGTTCTTCCEEECTTSCCEEEEE-CTTC-TTCCEEECCSSEEEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHH--------------HHhCCCCCCEEEeeCCCCCCCcc-cccC-CCCCEEEecCCcCCCC
Confidence            345789999999988875443              45778899999999999986665 4444 8999999999988866


Q ss_pred             CccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCccC-ccccC-CCC
Q psy3567          93 PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKF-PTVLF-NLQ  169 (277)
Q Consensus        93 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~-~~~l~-~~~  169 (277)
                      |..    ++|++|++++|.+..++..  .+++|++|++++|.+..+ |..++.+++|++|++++|.+..+ |..+. .++
T Consensus        96 ~~~----~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~  169 (487)
T 3oja_A           96 LVG----PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD  169 (487)
T ss_dssp             EEC----TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred             CCC----CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence            643    7899999999999877543  467899999999999876 44688899999999999999864 55555 689


Q ss_pred             CCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       170 ~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      +|++|++++|.++.++.......+++|++++|+++.+|..+..+++|+.|++++|.++  .+|..+..+++|+.+++++|
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTC
T ss_pred             cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEEcCCC
Confidence            9999999999999776555444699999999999999988999999999999999997  68888889999999999999


Q ss_pred             eeee
Q psy3567         250 LFEM  253 (277)
Q Consensus       250 ~~~~  253 (277)
                      ++.+
T Consensus       248 ~l~c  251 (487)
T 3oja_A          248 GFHC  251 (487)
T ss_dssp             CBCH
T ss_pred             CCcC
Confidence            9984

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=7.8e-24  Score=176.65  Aligned_cols=209  Identities=23%  Similarity=0.286  Sum_probs=170.4

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccC-ccccCcccCceeec
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSG  130 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l  130 (277)
                      +.+++|++++|+++.+++..+..+++|++|++++|++..+++ .+.++++|++|++++|.+..++ ..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            468999999999998876433434899999999999987765 6889999999999999998775 57889999999999


Q ss_pred             ccccccccch-hhhcCCCCCEEEccCCCCcc--CccccCCCCCCCEEEccCCCCcccCch-hccc-eee----EEEccCC
Q psy3567         131 NCNLIKELPL-SFSKLHNLKHLSLSQNQLNK--FPTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVI----EMNLNKN  201 (277)
Q Consensus       131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~--~~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~----~L~l~~n  201 (277)
                      ++|.+..++. .+..+++|++|++++|.+..  +|..+..+++|++|++++|.++.++.. +..+ .++    ++++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            9999987765 58889999999999999986  577888899999999999999976543 3333 244    8999999


Q ss_pred             ccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc--ccccccc
Q psy3567         202 QICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA--FQQLDGY  262 (277)
Q Consensus       202 ~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~l~~~  262 (277)
                      +++.++.......+|+.|++++|.++ +..+..+..+++|++|++++|++++..  ++.+..|
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~  249 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  249 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             cccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence            99998887667779999999999998 333345688999999999999999754  4444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=3.9e-23  Score=184.34  Aligned_cols=205  Identities=18%  Similarity=0.239  Sum_probs=111.4

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP   93 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~   93 (277)
                      .+++++|++++|.+++. |               .++.+++|++|++++|+++.+|  +..+ ++|++|++++|+++.++
T Consensus        41 l~~L~~L~Ls~n~l~~~-~---------------~l~~l~~L~~L~Ls~n~l~~~~--~~~l-~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T---------------GIEKLTGLTKLICTSNNITTLD--LSQN-TNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T---------------TGGGCTTCSEEECCSSCCSCCC--CTTC-TTCSEEECCSSCCSCCC
T ss_pred             cCCCCEEEccCCCcccC-h---------------hhcccCCCCEEEccCCcCCeEc--cccC-CCCCEEECcCCCCceee
Confidence            46788999999988864 2               2345556666666666665554  2333 55666666666655543


Q ss_pred             ccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCC-CccCccccCCCCCCC
Q psy3567          94 LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ-LNKFPTVLFNLQHLD  172 (277)
Q Consensus        94 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~  172 (277)
                        +.++++|++|++++|.++.++  ++.+++|++|++++|.+..++  ++.+++|++|++++|. +..+  .++.+++|+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence              555566666666666555543  555556666666666555542  4455555555555552 2233  234455555


Q ss_pred             EEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCee
Q psy3567         173 VLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF  251 (277)
Q Consensus       173 ~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~  251 (277)
                      +|++++|.++.+|  +..+ .+++|++++|+++.++  ++.+++|+.|++++|.++  .+|  +..+++|++|++++|.+
T Consensus       174 ~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~--~ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          174 TLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT--EID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             EEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCC
T ss_pred             EEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc--ccC--ccccCCCCEEEeeCCcC
Confidence            5555555555544  2222 2555555555555442  444555555555555554  233  44455555555555555


Q ss_pred             ee
Q psy3567         252 EM  253 (277)
Q Consensus       252 ~~  253 (277)
                      ++
T Consensus       246 ~~  247 (457)
T 3bz5_A          246 TE  247 (457)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.7e-23  Score=192.85  Aligned_cols=237  Identities=18%  Similarity=0.187  Sum_probs=140.5

Q ss_pred             CCceeEecCCCCcCCCCCCce------eeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTI------FVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +.+++|++++|.+++..|.++      .++.+.++.+    +..|+++++|++|++++|+++.+++..+..+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            467888888888877655433      4444554433    245666666677777766666553333333366667777


Q ss_pred             cCCCCCcC-CccccccCCCcEEeccCCcCcccC-ccccCcccCceeecccccccccc-hhhhcCCCCC--EEEccCCCCc
Q psy3567          85 SQNKISKF-PLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLK--HLSLSQNQLN  159 (277)
Q Consensus        85 ~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~--~L~l~~n~l~  159 (277)
                      ++|++..+ +..+.++++|++|++++|.+..++ +.+..+++|++|++++|.+..++ ..++.+++|+  .+++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            66666655 334666666777777776666542 33344666777777766666553 3466666666  6666666666


Q ss_pred             cCccccCCCC----------------------------------------------------CCCEEEccCCCCcccCch
Q psy3567         160 KFPTVLFNLQ----------------------------------------------------HLDVLDLSFNRIESIPDG  187 (277)
Q Consensus       160 ~~~~~l~~~~----------------------------------------------------~L~~L~l~~n~l~~l~~~  187 (277)
                      .+++......                                                    +++.+++++|.++.++..
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            4433222222                                                    344555555555544333


Q ss_pred             -hccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         188 -IGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       188 -~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                       +..+ .+++|++++|+++.+|..+..+++|++|++++|.++ +..|..+..+++|++|++++|.+.
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcc
Confidence             3333 366666666666666666666666666666666665 344455666666666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=4.4e-23  Score=171.65  Aligned_cols=198  Identities=27%  Similarity=0.460  Sum_probs=166.6

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeecc
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGN  131 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~  131 (277)
                      ..+.+++++++++.+|..+.   ++++.|++++|++..+++ .|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            46789999999999887543   679999999999998776 68899999999999999998866 45789999999999


Q ss_pred             cccccccch-hhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCC
Q psy3567         132 CNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHIS  207 (277)
Q Consensus       132 ~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~  207 (277)
                      +|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++.. +..+ ++++|++++|+++.++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            999998875 47889999999999999998764 466889999999999999988765 4445 4999999999999888


Q ss_pred             cC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         208 PD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       208 ~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      .. +..+++|++|++++|.++ ...+..+..+++|+.|++++|++....
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             hhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCCC
Confidence            75 788999999999999997 333345778899999999999987653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.6e-23  Score=189.38  Aligned_cols=200  Identities=19%  Similarity=0.260  Sum_probs=172.7

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc-CC---ccccccCCCcEEeccCCcCcccC---ccccC
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK-FP---LDLASYQLLKSLTFDQNKIESLP---KDIGT  121 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~-~~---~~~~~l~~L~~L~l~~~~i~~~~---~~~~~  121 (277)
                      +....+++.|++++|++..+|..++..+++|++|++++|++.. +|   ..+..+++|++|++++|.++.++   ..+..
T Consensus       306 ~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence            4556789999999999999999887545999999999999884 32   23678999999999999998775   35888


Q ss_pred             cccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccC
Q psy3567         122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNK  200 (277)
Q Consensus       122 l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~  200 (277)
                      +++|++|++++|.+..+|..+..+++|++|++++|.+..++..+.  ++|++|++++|.++.++.   .+ .+++|++++
T Consensus       386 l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~~---~l~~L~~L~Ls~  460 (549)
T 2z81_A          386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL---FLPRLQELYISR  460 (549)
T ss_dssp             CTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhcc---cCChhcEEECCC
Confidence            999999999999999999889999999999999999998876543  689999999999987653   33 499999999


Q ss_pred             CccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       201 n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      |+++.+|. ...+++|++|++++|.++ +..|..+..+++|+.+++++|++.+..
T Consensus       461 N~l~~ip~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          461 NKLKTLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             SCCSSCCC-GGGCTTCCEEECCSSCCC-CCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CccCcCCC-cccCccCCEEecCCCccC-CcCHHHHhcCcccCEEEecCCCccCCC
Confidence            99999987 467899999999999998 566667899999999999999998765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=3.3e-23  Score=190.91  Aligned_cols=238  Identities=19%  Similarity=0.190  Sum_probs=139.9

Q ss_pred             CCCCceeEecCCCCcCCCCCC------ceeeeccCCcchh----HhhhccCccCEEEeecCCCC-cCChhHHHhhccccE
Q psy3567          13 SSPSKLTLLLPGKKNRGLIEG------TIFVLKMGNSATK----RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRT   81 (277)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~   81 (277)
                      ..+++++|++++|.++ .+|.      .+..+.+.++.+.    ..+..+++|++|++++|.+. .+|...+..+++|++
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            3456777777777766 3443      3345555554432    45666677777777777665 555443333366777


Q ss_pred             EEccCCCCCcC---CccccccCCCcEEeccCCcCccc-CccccCcccCceeeccccccccc-c-hhhhcCCCCCEEEccC
Q psy3567          82 LDISQNKISKF---PLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKEL-P-LSFSKLHNLKHLSLSQ  155 (277)
Q Consensus        82 L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l-~-~~~~~l~~L~~L~l~~  155 (277)
                      |++++|++..+   +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+... + ..+..+++|++|++++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence            77777766643   34566667777777777766644 44566666666776666666533 2 2356666666666666


Q ss_pred             CCCccC-ccccCCCCCCCEEEccCCCCcc--cC--chhccc-eeeEEEccCCccCcCC-cCccCCCCCCEEEcCCCcccc
Q psy3567         156 NQLNKF-PTVLFNLQHLDVLDLSFNRIES--IP--DGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAI  228 (277)
Q Consensus       156 n~l~~~-~~~l~~~~~L~~L~l~~n~l~~--l~--~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~  228 (277)
                      |.+... +..+..+++|++|++++|.++.  ++  ..+..+ .+++|++++|+++.++ ..+..+++|+.|++++|.++ 
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-  513 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-  513 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC-
Confidence            666643 3445556666666666666653  22  223333 3666666666666543 44666666666666666665 


Q ss_pred             CccCccccCCCCccEEEcCCCeeee
Q psy3567         229 NAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       229 ~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +..|..+.+++.+ +|++++|.++.
T Consensus       514 ~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          514 SSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             GGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             cCChhHhCccccc-EEECcCCcccc
Confidence            4445555555555 55555555553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.8e-23  Score=177.54  Aligned_cols=200  Identities=19%  Similarity=0.210  Sum_probs=169.5

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhh----ccccEEEccCCCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELK----AVLRTLDISQNKI   89 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~----~~L~~L~l~~~~i   89 (277)
                      .+++++|++++|.+++..|..+.            +..+++|++|++++|+++.+|+.+..+.    ++|++|++++|++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l  161 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLL------------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS  161 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSS------------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred             cCCccEEEccCCcccchhHHHHH------------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence            45788888888888887776541            2668999999999999998887666652    7999999999999


Q ss_pred             CcCC-ccccccCCCcEEeccCCcCcc---cCccc--cCcccCceeecccccccccc---h-hhhcCCCCCEEEccCCCCc
Q psy3567          90 SKFP-LDLASYQLLKSLTFDQNKIES---LPKDI--GTLEKLENVSGNCNLIKELP---L-SFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus        90 ~~~~-~~~~~l~~L~~L~l~~~~i~~---~~~~~--~~l~~L~~L~l~~n~~~~l~---~-~~~~l~~L~~L~l~~n~l~  159 (277)
                      ..++ ..+.++++|++|++++|++..   ++..+  ..+++|++|++++|.+..++   . .+..+++|++|++++|.+.
T Consensus       162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred             ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            9776 579999999999999999763   34444  78999999999999998543   2 3567899999999999999


Q ss_pred             cCc--cccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567         160 KFP--TVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       160 ~~~--~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      ..+  ..+..+++|++|++++|.++.+|..+. ..+++|++++|+++.+|. +..+++|+.|++++|+++
T Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             cccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            754  345568999999999999999998877 569999999999999977 889999999999999987

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=3.1e-23  Score=193.56  Aligned_cols=215  Identities=20%  Similarity=0.250  Sum_probs=147.7

Q ss_pred             HhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCc---ccCccccC
Q psy3567          47 RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIE---SLPKDIGT  121 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~---~~~~~~~~  121 (277)
                      ..|..+++|++|++++|.+. .+|+..+..+++|++|++++|++..++ ..+..+++|++|++++|.+.   .+|..+..
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence            44556666666666666665 344333333366666666666665443 34666677777777776654   34667777


Q ss_pred             cccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCcc---------ccCCCCCCCEEEccCCCCcccCch-hcc
Q psy3567         122 LEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT---------VLFNLQHLDVLDLSFNRIESIPDG-IGK  190 (277)
Q Consensus       122 l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~---------~l~~~~~L~~L~l~~n~l~~l~~~-~~~  190 (277)
                      +++|++|++++|.+..++. .+..+++|++|++++|.+..++.         .+..+++|++|++++|.++.+|.. +..
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            8888888888888877764 47778888888888888775422         256678888888888888877764 444


Q ss_pred             c-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCcccc-CCCCccEEEcCCCeeeecc--ccccccc
Q psy3567         191 M-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEGNLFEMKA--FQQLDGY  262 (277)
Q Consensus       191 ~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~--~~~l~~~  262 (277)
                      + .+++|++++|+++.+|.. +..+++|+.|++++|.++ +..+..+. .+++|+.+++++|++.+..  +..+..|
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC-BCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC-ccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence            4 488888888888888776 567888888888888887 33334455 5788888888888888654  2444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=7.9e-23  Score=182.91  Aligned_cols=196  Identities=21%  Similarity=0.366  Sum_probs=117.6

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc---------------------cccccCCCcEEec
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL---------------------DLASYQLLKSLTF  107 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---------------------~~~~l~~L~~L~l  107 (277)
                      +..+++|++|++++|.++.++. +..+ ++|++|++++|.+..+++                     .+..+++|++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDISV-LAKL-TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL  250 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGC-TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             hccCCCCCEEECcCCcCCCChh-hccC-CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEEC
Confidence            4445555555555555554432 2222 455555555555443332                     3444555555555


Q ss_pred             cCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCch
Q psy3567         108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG  187 (277)
Q Consensus       108 ~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~  187 (277)
                      ++|.+...+. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++. 
T Consensus       251 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-  326 (466)
T 1o6v_A          251 ANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-  326 (466)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-
T ss_pred             CCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-
Confidence            5555554433 5555566666666666555543 5556666666666666665543 5556677777777776665544 


Q ss_pred             hccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         188 IGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       188 ~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      +..+ ++++|++++|+++.+ ..+..+++|+.|++++|.++ +..|  +..+++|++|++++|.+++.
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS-DLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC-ccch--hhcCCCCCEEeccCCcccCC
Confidence            3333 477777777777766 35667778888888888776 3333  67778888888888887763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=5.6e-23  Score=187.95  Aligned_cols=130  Identities=23%  Similarity=0.299  Sum_probs=80.2

Q ss_pred             ccCceeecccccccc-cchhhhcCCCCCEEEccCCCCccCc---cccCCCCCCCEEEccCCCCcc-cCchhc--------
Q psy3567         123 EKLENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQLNKFP---TVLFNLQHLDVLDLSFNRIES-IPDGIG--------  189 (277)
Q Consensus       123 ~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~l~~~~---~~l~~~~~L~~L~l~~n~l~~-l~~~~~--------  189 (277)
                      ++|++|++++|.+.. +|..+..+++|++|++++|.+..++   ..+..+++|++|++++|.++. +|....        
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            344455555555443 3444555556666666666555432   234455666666666666553 443210        


Q ss_pred             --------------c--ceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcc-ccCCCCccEEEcCCCeee
Q psy3567         190 --------------K--MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTC-ILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       190 --------------~--~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l~l~~n~~~  252 (277)
                                    .  ..+++|++++|+++.+|..+..+++|++|++++|.++  .+|.. +..+++|+++++++|+++
T Consensus       433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK--SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             EECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC--CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             EECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC--CCCHHHHhcCCCCCEEEecCCCcC
Confidence                          0  2366777777777777777667778888888888876  56665 777788888888888877


Q ss_pred             ec
Q psy3567         253 MK  254 (277)
Q Consensus       253 ~~  254 (277)
                      +.
T Consensus       511 c~  512 (562)
T 3a79_B          511 CT  512 (562)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=2.1e-23  Score=174.79  Aligned_cols=196  Identities=21%  Similarity=0.313  Sum_probs=173.4

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeecccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCN  133 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n  133 (277)
                      ++++++++.++.+|..+   ++++++|++++|.++.+++ .+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            68999999999999754   3789999999999998775 589999999999999999987 678999999999999999


Q ss_pred             c-cccc-chhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCc
Q psy3567         134 L-IKEL-PLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISP  208 (277)
Q Consensus       134 ~-~~~l-~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~  208 (277)
                      . +..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. +..+ .+++|++++|+++.++.
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 7877 56799999999999999999977 45677899999999999999987765 5555 49999999999999887


Q ss_pred             C-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         209 D-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       209 ~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      . +..+++|++|++++|.++ +..|..+..+++|++|++++|.++...
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             HHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCC
Confidence            5 889999999999999998 566889999999999999999988644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=3.1e-23  Score=187.81  Aligned_cols=226  Identities=18%  Similarity=0.225  Sum_probs=183.7

Q ss_pred             CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCC-hhHHHhh--ccccEEEccCCCCCcC
Q psy3567          16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFP-DEMNELK--AVLRTLDISQNKISKF   92 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~--~~L~~L~l~~~~i~~~   92 (277)
                      ++++|++++|.+.|.+|..+...         ...+++.|+.++++++.+ .+| ..+....  .+++.|++++|.+...
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~---------~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~  317 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDY---------SGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM  317 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCC---------CSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             cccEEEeecccccCccccchhhc---------ccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc
Confidence            45555555555555555444221         126789999999999999 888 4444432  4599999999988754


Q ss_pred             CccccccCCCcEEeccCCcCcc-cCccccCcccCceeeccccccccc---chhhhcCCCCCEEEccCCCCcc-Cccc-cC
Q psy3567          93 PLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLENVSGNCNLIKEL---PLSFSKLHNLKHLSLSQNQLNK-FPTV-LF  166 (277)
Q Consensus        93 ~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~l~~n~~~~l---~~~~~~l~~L~~L~l~~n~l~~-~~~~-l~  166 (277)
                      +. +..+++|++|++++|.+.. .|..++.+++|++|++++|.+..+   |..+..+++|++|++++|.+.. +|.. +.
T Consensus       318 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          318 LC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             CC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             cc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            42 2688999999999999986 678899999999999999999854   4678999999999999999997 8765 66


Q ss_pred             CCCCCCEEEccCCCCc-ccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcc-ccCCCCccEE
Q psy3567         167 NLQHLDVLDLSFNRIE-SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTC-ILTSSNVCTL  244 (277)
Q Consensus       167 ~~~~L~~L~l~~n~l~-~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l  244 (277)
                      .+++|++|++++|.++ .+|..+. ..+++|++++|+++.+|..+..+++|++|++++|+++  .+|.. +..+++|+++
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK--SVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEE
T ss_pred             cCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC--ccCHHHhccCCcccEE
Confidence            7899999999999997 4554443 3599999999999999999889999999999999998  67775 8889999999


Q ss_pred             EcCCCeeeecc
Q psy3567         245 NVEGNLFEMKA  255 (277)
Q Consensus       245 ~l~~n~~~~~~  255 (277)
                      ++++|++++..
T Consensus       474 ~l~~N~~~c~c  484 (520)
T 2z7x_B          474 WLHTNPWDCSC  484 (520)
T ss_dssp             ECCSSCBCCCH
T ss_pred             ECcCCCCcccC
Confidence            99999999754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=2.3e-23  Score=185.03  Aligned_cols=203  Identities=19%  Similarity=0.280  Sum_probs=174.1

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCc-cccCcccCceeec
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG  130 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l  130 (277)
                      +.++.|++++|+++.+++..+..+++|++|++++|++..++ ..|.++++|++|++++|++..++. .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57899999999999887555555599999999999999776 468999999999999999998865 6889999999999


Q ss_pred             ccccccccch-hhhcCCCCCEEEccCC-CCccCcc-ccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcC-
Q psy3567         131 NCNLIKELPL-SFSKLHNLKHLSLSQN-QLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHI-  206 (277)
Q Consensus       131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n-~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l-  206 (277)
                      ++|.+..++. .|..+++|++|++++| .+..++. .+..+++|++|++++|.++.+|......++++|++++|+++.+ 
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence            9999998875 6889999999999984 5556654 5678999999999999999888643333699999999999987 


Q ss_pred             CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeeccc
Q psy3567         207 SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAF  256 (277)
Q Consensus       207 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  256 (277)
                      +..+..+++|+.|++++|.++ +..+..+..+++|++|++++|.++....
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             hhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccCh
Confidence            456999999999999999998 5667788999999999999999986443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=9.1e-23  Score=182.50  Aligned_cols=231  Identities=23%  Similarity=0.329  Sum_probs=113.0

Q ss_pred             CCCceeEecCCCCcCCCCC----CceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN   87 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~   87 (277)
                      .+++++|++++|.+.+..+    +.+.++.+.++.+.  ..+..+++|++|++++|.++.+++ +..+ ++|++|++++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~n  144 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNL-TNLNRLELSSN  144 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTC-TTCSEEEEEEE
T ss_pred             hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCC-CCCCEEECCCC
Confidence            4567777777777665533    33445555544332  226666666666666666666554 3333 56666666665


Q ss_pred             CCCcCCc--------------------cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch-------
Q psy3567          88 KISKFPL--------------------DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-------  140 (277)
Q Consensus        88 ~i~~~~~--------------------~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~-------  140 (277)
                      .+..++.                    .+.++++|++|++++|.+..++ .+..+++|++|++++|.+..++.       
T Consensus       145 ~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L  223 (466)
T 1o6v_A          145 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNL  223 (466)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCC
Confidence            5543321                    1334445555555555544432 24444445555554444443322       


Q ss_pred             --------------hhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCc
Q psy3567         141 --------------SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICH  205 (277)
Q Consensus       141 --------------~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~  205 (277)
                                    .+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++. +..+ .+++|++++|+++.
T Consensus       224 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred             CEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence                          23333444444444444433322 3344444444444444444333 2222 25555555555554


Q ss_pred             CCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         206 ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       206 l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++. +..+++|+.|++++|.++ +..|  +..+++|++|++++|.+++
T Consensus       302 ~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          302 ISP-ISNLKNLTYLTLYFNNIS-DISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CGG-GGGCTTCSEEECCSSCCS-CCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             chh-hcCCCCCCEEECcCCcCC-Cchh--hccCccCCEeECCCCccCC
Confidence            443 445555555555555554 2221  4455556666666655543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=2.9e-23  Score=185.05  Aligned_cols=202  Identities=18%  Similarity=0.239  Sum_probs=172.3

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCc-cccCcccCceeec
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG  130 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l  130 (277)
                      +.+++|++++|+++.+++..+..+++|+.|++++|++..++ ..|.++++|++|++++|.+..++. .+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57899999999999876554444599999999999999765 568999999999999999998865 5888999999999


Q ss_pred             ccccccccch-hhhcCCCCCEEEccC-CCCccCcc-ccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCC
Q psy3567         131 NCNLIKELPL-SFSKLHNLKHLSLSQ-NQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHIS  207 (277)
Q Consensus       131 ~~n~~~~l~~-~~~~l~~L~~L~l~~-n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~  207 (277)
                      ++|.+..++. .|..+++|++|++++ +.+..++. .+..+++|++|++++|.++.+|.......+++|++++|+++.++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence            9999998875 688999999999998 45666654 56789999999999999998876433335999999999999774


Q ss_pred             -cCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         208 -PDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       208 -~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                       ..+..+++|+.|++++|.++ +..+..+..+++|++|++++|.++...
T Consensus       235 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          235 PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             GGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccC
Confidence             56899999999999999998 566778899999999999999988644

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=9.3e-23  Score=187.62  Aligned_cols=226  Identities=23%  Similarity=0.255  Sum_probs=144.4

Q ss_pred             CCceeEecCCCCcCCCC--CCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC
Q psy3567          15 PSKLTLLLPGKKNRGLI--EGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF   92 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~   92 (277)
                      +++++|++++|.++...  ++.+..+.+.++.+...-..+++|++|++++|.++.+|.    .+++|+.|++++|+++.+
T Consensus        61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l  136 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL  136 (622)
T ss_dssp             TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCC
T ss_pred             CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcC
Confidence            46666777777665321  234455555555443222255666666666666666665    225666666666666666


Q ss_pred             CccccccCCCcEEeccCCcCcccCccccC---c--------------ccCceeecccccccccchhhhcCCCCCEEEccC
Q psy3567          93 PLDLASYQLLKSLTFDQNKIESLPKDIGT---L--------------EKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQ  155 (277)
Q Consensus        93 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~---l--------------~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~  155 (277)
                      |..   +++|++|++++|.+..+|..+..   +              ++|++|++++|.+..+|..   +++|+.|++++
T Consensus       137 p~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~  210 (622)
T 3g06_A          137 PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYN  210 (622)
T ss_dssp             CCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred             CCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcC
Confidence            553   36677777777776655432211   1              3344444444444443321   23444555555


Q ss_pred             CCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccc
Q psy3567         156 NQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCI  235 (277)
Q Consensus       156 n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  235 (277)
                      |.+..+|..   +++|++|++++|.++.+|...  .++++|++++|+++.+|.   .+++|+.|++++|.++  .+|..+
T Consensus       211 N~l~~l~~~---~~~L~~L~Ls~N~L~~lp~~l--~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~--~lp~~l  280 (622)
T 3g06_A          211 NRLTSLPAL---PSGLKELIVSGNRLTSLPVLP--SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT--RLPESL  280 (622)
T ss_dssp             SCCSSCCCC---CTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC--SCCGGG
T ss_pred             CcccccCCC---CCCCCEEEccCCccCcCCCCC--CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC--cCCHHH
Confidence            554444432   367888888888888877322  248899999999998887   5688999999999997  789999


Q ss_pred             cCCCCccEEEcCCCeeeeccccccc
Q psy3567         236 LTSSNVCTLNVEGNLFEMKAFQQLD  260 (277)
Q Consensus       236 ~~~~~L~~l~l~~n~~~~~~~~~l~  260 (277)
                      .++++|+.|++++|++++..+..+.
T Consensus       281 ~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             GGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             hhccccCEEEecCCCCCCcCHHHHH
Confidence            9999999999999999976655443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.5e-23  Score=187.51  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=71.5

Q ss_pred             CCceeEecCCCCcCCCCC------CceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +++++|++++|.+++..+      ..+..+.+.++.+    +..|..+++|++|++++|+++.+|..  .+ ++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l-~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PT-VNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC-CCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--cc-CCccEEec
Confidence            567777777777766544      3344555555444    24566666666666666666666654  33 66666676


Q ss_pred             cCCCCCc--CCccccccCCCcEEeccCCcCcccCccccCcccC--ceeecccccc
Q psy3567          85 SQNKISK--FPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKL--ENVSGNCNLI  135 (277)
Q Consensus        85 ~~~~i~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L--~~L~l~~n~~  135 (277)
                      ++|++..  +|..+.++++|++|++++|.+..  ..+..+++|  +++++++|.+
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            6666664  34566666667777766666654  244555555  6666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.9e-22  Score=179.81  Aligned_cols=197  Identities=22%  Similarity=0.302  Sum_probs=97.3

Q ss_pred             ceeEecCCCCcCC--CCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567          17 KLTLLLPGKKNRG--LIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL   94 (277)
Q Consensus        17 l~~l~l~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~   94 (277)
                      +++|++++|++++  .+++.+..+.+..+.+...-...++|++|++++|+++.++..    +++|++|++++|+++.+| 
T Consensus        73 l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-  147 (454)
T 1jl5_A           73 AHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-  147 (454)
T ss_dssp             CSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-
T ss_pred             CCEEEecCCccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-
Confidence            3556666666555  444555555555544432112234555666666655554431    145566666666555555 


Q ss_pred             cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCcc-----------
Q psy3567          95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-----------  163 (277)
Q Consensus        95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------  163 (277)
                      .+.++++|++|++++|.+..+|...   .+|++|++++|.+..+| .+..+++|++|++++|.+..+|.           
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~  223 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG  223 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECc
Confidence            3555555666666655555544322   24555555555555544 34455555555555554444432           


Q ss_pred             --------ccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567         164 --------VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       164 --------~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                              .++.+++|++|++++|.++.+|...  ..+++|++++|+++.+|...   ++|+.|++++|.++
T Consensus       224 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~l~~~~---~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          224 NNILEELPELQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFS  290 (454)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS
T ss_pred             CCcCCcccccCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccccCccc---CcCCEEECcCCccC
Confidence                    2344444455555544444443321  12444555555544444322   44555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=9e-23  Score=170.20  Aligned_cols=199  Identities=28%  Similarity=0.317  Sum_probs=168.5

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-   93 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-   93 (277)
                      +.+++|++++|.+++..+.              .|..+++|++|++++|+++.+++..+..+++|++|++++|++..++ 
T Consensus        28 ~~l~~L~ls~n~l~~~~~~--------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSY--------------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT--------------TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCccEEECCCCcccccCHh--------------HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence            4678888888877654332              4677899999999999999888755554599999999999999766 


Q ss_pred             ccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccc--cchhhhcCCCCCEEEccCCCCccCc-cccCCCC
Q psy3567          94 LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE--LPLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQ  169 (277)
Q Consensus        94 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~--l~~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~  169 (277)
                      ..+.++++|++|++++|.+..++. .++.+++|++|++++|.+..  +|..+..+++|++|++++|.+..++ ..+..+.
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence            468999999999999999998765 78999999999999999986  6788999999999999999999775 3454445


Q ss_pred             CCC----EEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         170 HLD----VLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       170 ~L~----~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      +++    ++++++|.++.++...... ++++|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            555    8999999999887665444 699999999999999876 688999999999999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=7.4e-23  Score=167.20  Aligned_cols=192  Identities=15%  Similarity=0.188  Sum_probs=161.7

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCC-CCcCCc-cccccCCCcEEeccC-CcCcccC-ccccCcccCcee
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNK-ISKFPL-DLASYQLLKSLTFDQ-NKIESLP-KDIGTLEKLENV  128 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~-~~~~l~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~L  128 (277)
                      +.+++|++++|+++.+|+..+..+++|++|++++|+ ++.+++ .|.++++|++|++++ |.+..++ ..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378999999999998887555545899999999997 887776 688999999999998 8998886 478889999999


Q ss_pred             ecccccccccchhhhcCCCCC---EEEccCC-CCccCcc-ccCCCCCCC-EEEccCCCCcccCchhccc-eeeEEEccCC
Q psy3567         129 SGNCNLIKELPLSFSKLHNLK---HLSLSQN-QLNKFPT-VLFNLQHLD-VLDLSFNRIESIPDGIGKM-KVIEMNLNKN  201 (277)
Q Consensus       129 ~l~~n~~~~l~~~~~~l~~L~---~L~l~~n-~l~~~~~-~l~~~~~L~-~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n  201 (277)
                      ++++|.+..+|. +..+++|+   +|++++| .+..++. .+..+++|+ ++++++|.++.+|...+.. ++++|++++|
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            999999998886 88888888   9999999 8888865 467789999 9999999999888765444 5999999999


Q ss_pred             c-cCcCCcC-ccCC-CCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         202 Q-ICHISPD-ISEC-VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       202 ~-l~~l~~~-l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      + ++.++.. +..+ ++|+.|++++|.++  .+|..  .+++++.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCC--CCCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccc--cCChh--HhccCceeeccCc
Confidence            5 9988754 7788 89999999999997  56654  6778999998876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=2.8e-22  Score=182.60  Aligned_cols=173  Identities=17%  Similarity=0.213  Sum_probs=139.5

Q ss_pred             ccccEEEccCCCCCcCCccc-cccCCCcEEeccCCcCccc-C---ccccCcccCceeecccccccccc---hhhhcCCCC
Q psy3567          77 AVLRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESL-P---KDIGTLEKLENVSGNCNLIKELP---LSFSKLHNL  148 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~-~~l~~L~~L~l~~~~i~~~-~---~~~~~l~~L~~L~l~~n~~~~l~---~~~~~l~~L  148 (277)
                      ++++.|++++|.+..+|..+ .++++|++|++++|.+... +   ..++.+++|++|++++|.+..++   ..+..+++|
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence            45666777777776677664 5688899999999988743 2   34677888999999999888765   347888999


Q ss_pred             CEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCcccc
Q psy3567         149 KHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAI  228 (277)
Q Consensus       149 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~  228 (277)
                      ++|++++|.+..+|..+..+++|++|++++|.++.+|..+. ..+++|++++|+++.++   ..+++|++|++++|.++ 
T Consensus       390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-  464 (549)
T 2z81_A          390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-  464 (549)
T ss_dssp             CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC-TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-
T ss_pred             CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc-CCceEEECCCCChhhhc---ccCChhcEEECCCCccC-
Confidence            99999999999888888888899999999999887776543 25889999999988765   46789999999999997 


Q ss_pred             CccCccccCCCCccEEEcCCCeeeeccc
Q psy3567         229 NAIPTCILTSSNVCTLNVEGNLFEMKAF  256 (277)
Q Consensus       229 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~  256 (277)
                       .+|. ...+++|++|++++|.+++...
T Consensus       465 -~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          465 -TLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             -SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             -cCCC-cccCccCCEEecCCCccCCcCH
Confidence             7776 4678999999999999986543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=2e-22  Score=170.90  Aligned_cols=189  Identities=22%  Similarity=0.355  Sum_probs=166.6

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL   94 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~   94 (277)
                      +++++|++++|.+...                ..+..+++|++|++++|.++.+++ +..+ ++|++|++++|++..++ 
T Consensus        41 ~~L~~L~l~~~~i~~l----------------~~~~~l~~L~~L~L~~n~i~~~~~-~~~l-~~L~~L~L~~n~l~~~~-  101 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI----------------EGVQYLNNLIGLELKDNQITDLAP-LKNL-TKITELELSGNPLKNVS-  101 (308)
T ss_dssp             HTCCEEECTTSCCCCC----------------TTGGGCTTCCEEECCSSCCCCCGG-GTTC-CSCCEEECCSCCCSCCG-
T ss_pred             CCcCEEEeeCCCccCc----------------hhhhccCCCCEEEccCCcCCCChh-HccC-CCCCEEEccCCcCCCch-
Confidence            5788888888876642                236789999999999999999887 5555 99999999999999875 


Q ss_pred             cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEE
Q psy3567          95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL  174 (277)
Q Consensus        95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L  174 (277)
                      .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL  178 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence            68899999999999999998764 8899999999999999998875 8899999999999999998876 8889999999


Q ss_pred             EccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567         175 DLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       175 ~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      ++++|.++.++. +..+ .+++|++++|+++.++. +..+++|+.|++++|+++
T Consensus       179 ~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          179 KADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             ECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence            999999998876 4444 59999999999998884 889999999999999997

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=2.7e-22  Score=178.73  Aligned_cols=223  Identities=21%  Similarity=0.282  Sum_probs=126.9

Q ss_pred             CCCceeEecCCCCcCC--CCCCceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCC
Q psy3567          14 SPSKLTLLLPGKKNRG--LIEGTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKI   89 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~--~~~~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i   89 (277)
                      .+++++|++++|.+++  ..+..+..+.+..+.+.  ..+..+++|++|++++|+++.+|...    ++|++|++++|++
T Consensus       152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~----~~L~~L~l~~n~l  227 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL  227 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc----CcccEEECcCCcC
Confidence            3456666666666654  22234555555554432  24566677777777777777665422    4677777777777


Q ss_pred             CcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccc---c-
Q psy3567          90 SKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV---L-  165 (277)
Q Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~---l-  165 (277)
                      ..+| .+..+++|++|++++|++..+|..   .++|++|++++|.+..+|..   .++|++|++++|.+..++..   + 
T Consensus       228 ~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~  300 (454)
T 1jl5_A          228 EELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLY  300 (454)
T ss_dssp             SSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred             Cccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence            7666 367777777777777777766542   35667777777766665542   24566666666665543211   0 


Q ss_pred             ------------CCC-CCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccC--c
Q psy3567         166 ------------FNL-QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAIN--A  230 (277)
Q Consensus       166 ------------~~~-~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~--~  230 (277)
                                  ..+ ++|++|++++|.++.+|...  ..+++|++++|+++.+|.   .+++|++|++++|+++ +  .
T Consensus       301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~-~l~~  374 (454)
T 1jl5_A          301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLR-EFPD  374 (454)
T ss_dssp             EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             EEECcCCcCCcccCCcCcCCEEECCCCccccccccC--CcCCEEECCCCccccccc---hhhhccEEECCCCCCC-cCCC
Confidence                        111 35666666666666655432  236777777777777766   3567777888777776 4  4


Q ss_pred             cCccccCC-------------CCccEEEcCCCeeee
Q psy3567         231 IPTCILTS-------------SNVCTLNVEGNLFEM  253 (277)
Q Consensus       231 ~~~~~~~~-------------~~L~~l~l~~n~~~~  253 (277)
                      +|..+..+             ++|++|++++|.+++
T Consensus       375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CCTTCCEEECCC------------------------
T ss_pred             ChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            56666555             677778888777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=3.7e-22  Score=186.33  Aligned_cols=235  Identities=20%  Similarity=0.234  Sum_probs=116.5

Q ss_pred             CCceeEecCCCCcCCCCCCc------eeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGT------IFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~------~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +++++|++++|.+++..+..      +..+.+..+.+    +..|+++++|++|++++|+++.+|+..+..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            57788888888877655432      23333333322    234455555555555555555555432222255555555


Q ss_pred             cCCCCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccchh-h--hcCCCCCEEEccCCCCc
Q psy3567          85 SQNKISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPLS-F--SKLHNLKHLSLSQNQLN  159 (277)
Q Consensus        85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~~-~--~~l~~L~~L~l~~n~l~  159 (277)
                      ++|++..+++ .|.++++|++|++++|.+... +..++.+++|++|++++|.+..++.. +  ..+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            5555554432 355555555555555555433 23444555555555555555444321 2  22345555555555544


Q ss_pred             cCcc-ccCCC---------------------------CCCCEEEccCCCCccc-Cchhccc---eeeEEEccCCccCcCC
Q psy3567         160 KFPT-VLFNL---------------------------QHLDVLDLSFNRIESI-PDGIGKM---KVIEMNLNKNQICHIS  207 (277)
Q Consensus       160 ~~~~-~l~~~---------------------------~~L~~L~l~~n~l~~l-~~~~~~~---~l~~L~l~~n~l~~l~  207 (277)
                      .+++ .+..+                           ++|+.|++++|.++.. |.++...   .+++|++++|+++.++
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            3321 12111                           3344444444444422 2223222   1556666666665443


Q ss_pred             -cCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCe
Q psy3567         208 -PDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL  250 (277)
Q Consensus       208 -~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  250 (277)
                       ..++.+++|+.|++++|.++ +..|..+..+++|+.+++++|.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCB
T ss_pred             cccccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchh
Confidence             33555666666666666665 3445555666666666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=6.8e-23  Score=188.83  Aligned_cols=234  Identities=20%  Similarity=0.188  Sum_probs=170.3

Q ss_pred             CCCceeEecCCCCcCCCCC-----CceeeeccCCcchh--HhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEcc
Q psy3567          14 SPSKLTLLLPGKKNRGLIE-----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDIS   85 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~-----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~   85 (277)
                      .+++++++++++.+... |     ..+..+.+.++.+.  +.+ .++.|++|++++|+.. .++  +..+ ++|++|+++
T Consensus       284 l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~ls  358 (606)
T 3vq2_A          284 LANVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK--KVAL-PSLSYLDLS  358 (606)
T ss_dssp             GTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECC--CCCC-TTCCEEECC
T ss_pred             CCCCCEEEecCccchhh-hhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchh--hccC-CCCCEEECc
Confidence            35667777777766432 2     12333333333321  122 5556666666666332 221  1223 677777777


Q ss_pred             CCCCCcC---CccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccc--hhhhcCCCCCEEEccCCCCcc
Q psy3567          86 QNKISKF---PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNK  160 (277)
Q Consensus        86 ~~~i~~~---~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~  160 (277)
                      +|+++.+   |..+..+++|++|++++|.+..++..+..+++|++|++++|.+..++  ..+..+++|++|++++|.+..
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence            7777644   56677888888888888888888888888888999998888887654  367888899999999998885


Q ss_pred             -CccccCCCCCCCEEEccCCCCcc--cCchhccce-eeEEEccCCccCcCC-cCccCCCCCCEEEcCCCccccCccCccc
Q psy3567         161 -FPTVLFNLQHLDVLDLSFNRIES--IPDGIGKMK-VIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCI  235 (277)
Q Consensus       161 -~~~~l~~~~~L~~L~l~~n~l~~--l~~~~~~~~-l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~  235 (277)
                       .|..+..+++|++|++++|.++.  +|..+..++ +++|++++|+++.++ ..+..+++|++|++++|.++ +..|..+
T Consensus       439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~  517 (606)
T 3vq2_A          439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHY  517 (606)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CEEGGGT
T ss_pred             cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-CcCHHHc
Confidence             46667788999999999998884  577676664 899999999998664 45888999999999999998 5668888


Q ss_pred             cCCCCccEEEcCCCeeee
Q psy3567         236 LTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       236 ~~~~~L~~l~l~~n~~~~  253 (277)
                      ..+++|++|++++|.++.
T Consensus       518 ~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          518 NQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             TTCTTCCEEECTTSCCCC
T ss_pred             cCCCcCCEEECCCCcCcc
Confidence            899999999999998874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.6e-22  Score=167.84  Aligned_cols=196  Identities=22%  Similarity=0.297  Sum_probs=167.1

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP   93 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~   93 (277)
                      .++++++++++++++. +|..+                .+.+++|++++|.++.+++..+..+++|++|++++|.++.++
T Consensus         9 l~~l~~l~~~~~~l~~-ip~~~----------------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   71 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA-LPPDL----------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ   71 (290)
T ss_dssp             STTCCEEECTTSCCSS-CCSCC----------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred             cCCccEEECCCCCCCc-CCCCC----------------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence            4578899999998874 44433                257899999999999776544444489999999999998776


Q ss_pred             ccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCccCccc-cCCCCCC
Q psy3567          94 LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHL  171 (277)
Q Consensus        94 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L  171 (277)
                      .. ..+++|++|++++|.+..+|..+..+++|++|++++|.+..++ ..|..+++|++|++++|.+..++.. +..+++|
T Consensus        72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            64 7889999999999999999988899999999999999999887 4689999999999999999988765 4578999


Q ss_pred             CEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567         172 DVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       172 ~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      ++|++++|.++.+|... ..+ ++++|++++|+++.+|..+...++|+.+++++|++.
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            99999999999888765 334 599999999999999999888899999999999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=2.9e-23  Score=179.19  Aligned_cols=201  Identities=18%  Similarity=0.203  Sum_probs=168.1

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCcc-ccCcccCceeec
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSG  130 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l  130 (277)
                      +++++|++++|+++.+++..+..+++|++|++++|+++.++ ..+.++++|++|++++|.+..++.. ++.+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            47899999999999888744444499999999999999765 4689999999999999999988765 889999999999


Q ss_pred             ccccccccch--hhhcCCCCCEEEccCC-CCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccC
Q psy3567         131 NCNLIKELPL--SFSKLHNLKHLSLSQN-QLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       131 ~~n~~~~l~~--~~~~l~~L~~L~l~~n-~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~  204 (277)
                      ++|.+..++.  .+..+++|++|++++| .+..+ +..+..+++|++|++++|.++.+ |..+..+ ++++|++++|+++
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999998876  6889999999999998 46666 45677899999999999999865 6667666 4999999999999


Q ss_pred             cCCcC-ccCCCCCCEEEcCCCccccC------------------------------ccCccccCCCCccEEEcCCCeeee
Q psy3567         205 HISPD-ISECVRLKILRLEENCLAIN------------------------------AIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       205 ~l~~~-l~~~~~L~~L~l~~n~~~~~------------------------------~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      .++.. +..+++|+.|++++|.++..                              .+|..+..+++|++|++++|.++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            88876 44588999999999998721                              133446678899999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=6e-22  Score=181.14  Aligned_cols=86  Identities=15%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             CCCCCCEEEccCCCCcc-cCchhccce-eeEEEccCCccCcCC---cCccCCCCCCEEEcCCCccccCccCc-cccCCCC
Q psy3567         167 NLQHLDVLDLSFNRIES-IPDGIGKMK-VIEMNLNKNQICHIS---PDISECVRLKILRLEENCLAINAIPT-CILTSSN  240 (277)
Q Consensus       167 ~~~~L~~L~l~~n~l~~-l~~~~~~~~-l~~L~l~~n~l~~l~---~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~  240 (277)
                      .+++|++|++++|.++. .|..+..++ +++|++++|+++.++   ..+..+++|+.|++++|.++ +.+|. .+..+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN-SHAYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB-SCCSSCCCCCCTT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC-CccChhhhcCccc
Confidence            44566666666666663 444444443 666666666666543   34566666666666666665 33443 3445566


Q ss_pred             ccEEEcCCCeeee
Q psy3567         241 VCTLNVEGNLFEM  253 (277)
Q Consensus       241 L~~l~l~~n~~~~  253 (277)
                      |++|++++|.+++
T Consensus       430 L~~L~l~~n~l~~  442 (562)
T 3a79_B          430 ILVLNLSSNMLTG  442 (562)
T ss_dssp             CCEEECCSSCCCG
T ss_pred             CCEEECCCCCCCc
Confidence            6666666665544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.4e-21  Score=162.60  Aligned_cols=195  Identities=27%  Similarity=0.407  Sum_probs=166.6

Q ss_pred             CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc
Q psy3567          16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD   95 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~   95 (277)
                      ...++++++++++. +|..+                .+.+++|++++|+++.+++..+..+++|++|++++|+++.++..
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~----------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~   79 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI----------------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG   79 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC----------------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCEEEccCCCCCc-cCCCC----------------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence            45679999988874 45433                24689999999999988875444449999999999999988775


Q ss_pred             -ccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCC
Q psy3567          96 -LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHL  171 (277)
Q Consensus        96 -~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L  171 (277)
                       |.++++|++|++++|.+..++. .+..+++|++|++++|.+..++. .|..+++|++|++++|.+..++.. +..+++|
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence             6889999999999999998865 57889999999999999998764 578999999999999999988765 6789999


Q ss_pred             CEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         172 DVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       172 ~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      ++|++++|.++.++.. +..+ .+++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            9999999999988765 4445 599999999999998875 788999999999999987

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=8.3e-23  Score=186.74  Aligned_cols=159  Identities=19%  Similarity=0.268  Sum_probs=104.4

Q ss_pred             ccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccc--hhhhcCCCCCEEEccCCCCcc-CccccCCCCCCC
Q psy3567          96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNK-FPTVLFNLQHLD  172 (277)
Q Consensus        96 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~-~~~~l~~~~~L~  172 (277)
                      +..+++|++|++++|.+..++..+..+++|++|++++|.+...+  ..+..+++|++|++++|.+.. .+..+..+++|+
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence            34444555555555555444444555666666666666655442  245666677777777776664 344556677777


Q ss_pred             EEEccCCCCc--ccCchhccce-eeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCC
Q psy3567         173 VLDLSFNRIE--SIPDGIGKMK-VIEMNLNKNQICHI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG  248 (277)
Q Consensus       173 ~L~l~~n~l~--~l~~~~~~~~-l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  248 (277)
                      +|++++|.++  .+|..+..++ +++|++++|+++.+ |..+..+++|++|++++|.++ +..+..+.++++|+++++++
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-CCCHHHhhcccCCcEEEecC
Confidence            7777777765  4666665553 77888888888766 556777888888888888877 44455677788888888888


Q ss_pred             Ceeeecc
Q psy3567         249 NLFEMKA  255 (277)
Q Consensus       249 n~~~~~~  255 (277)
                      |++++..
T Consensus       528 N~~~~~~  534 (570)
T 2z63_A          528 NPWDCSC  534 (570)
T ss_dssp             SCBCCCT
T ss_pred             CcccCCC
Confidence            8887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.6e-21  Score=162.45  Aligned_cols=175  Identities=27%  Similarity=0.430  Sum_probs=82.2

Q ss_pred             hccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCcee
Q psy3567          50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENV  128 (277)
Q Consensus        50 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L  128 (277)
                      ..+++++.|+++++.++.++. +..+ ++|++|++++|.+..++ .+..+++|++|++++|.+..++. .+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~-l~~l-~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG-IQYL-PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT-GGGC-TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCcccccc-cccC-CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            444555555555555554442 2223 55555555555554432 34455555555555555554433 24445555555


Q ss_pred             ecccccccccchh-hhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccC
Q psy3567         129 SGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       129 ~l~~n~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~  204 (277)
                      ++++|.+..++.. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++... ..+ ++++|++++|+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            5555555444332 44455555555555555544332 234455555555555554443321 222 2444444444444


Q ss_pred             cCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         205 HISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       205 ~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      .++.. +..+++|+.|++++|++.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcc
Confidence            44332 344444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.7e-22  Score=170.15  Aligned_cols=200  Identities=18%  Similarity=0.170  Sum_probs=158.2

Q ss_pred             hccCccCEEEeecCCCCc-CChhHH-HhhccccEEEccCCCCCcC-C----ccccccCCCcEEeccCCcCcccC-ccccC
Q psy3567          50 ETAKKTGVINLSHQGFKE-FPDEMN-ELKAVLRTLDISQNKISKF-P----LDLASYQLLKSLTFDQNKIESLP-KDIGT  121 (277)
Q Consensus        50 ~~~~~L~~L~l~~~~i~~-~~~~~~-~~~~~L~~L~l~~~~i~~~-~----~~~~~l~~L~~L~l~~~~i~~~~-~~~~~  121 (277)
                      ..++.|++|++++|.+.. .|..++ ...++|++|++++|.+... +    ..+..+++|++|++++|.+..++ ..++.
T Consensus        88 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           88 LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            345679999999999884 444441 3338999999999998843 2    22457899999999999998775 57889


Q ss_pred             cccCceeecccccccc---cc--hhhhcCCCCCEEEccCCCCccCccc----cCCCCCCCEEEccCCCCccc-Cchhccc
Q psy3567         122 LEKLENVSGNCNLIKE---LP--LSFSKLHNLKHLSLSQNQLNKFPTV----LFNLQHLDVLDLSFNRIESI-PDGIGKM  191 (277)
Q Consensus       122 l~~L~~L~l~~n~~~~---l~--~~~~~l~~L~~L~l~~n~l~~~~~~----l~~~~~L~~L~l~~n~l~~l-~~~~~~~  191 (277)
                      +++|++|++++|.+..   ++  ..+..+++|++|++++|.++.++..    +..+++|++|++++|.++.. |..++..
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            9999999999998653   32  2347888999999999999866542    45678999999999999965 6666554


Q ss_pred             ----eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         192 ----KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       192 ----~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                          .+++|++++|+++.+|..+.  ++|++|++++|+++  .+|. +..+++|++|++++|+++.+
T Consensus       248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~--~~~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN--RAPQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC--SCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred             cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC--CCch-hhhCCCccEEECcCCCCCCC
Confidence                58999999999999998774  79999999999998  4444 57789999999999988754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.5e-21  Score=174.12  Aligned_cols=184  Identities=16%  Similarity=0.250  Sum_probs=123.2

Q ss_pred             CCCCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc
Q psy3567          12 PSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK   91 (277)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~   91 (277)
                      ...+++++|++++|.+++. +                ++.+++|++|++++|+++.++  +..+ ++|++|++++|+++.
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~-~----------------~~~l~~L~~L~Ls~N~l~~~~--~~~l-~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTL-D----------------LSQNTNLTYLACDSNKLTNLD--VTPL-TKLTYLNCDTNKLTK  120 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCC-C----------------CTTCTTCSEEECCSSCCSCCC--CTTC-TTCCEEECCSSCCSC
T ss_pred             cccCCCCEEEccCCcCCeE-c----------------cccCCCCCEEECcCCCCceee--cCCC-CcCCEEECCCCcCCe
Confidence            3457899999999998874 1                345667777777777777664  3344 677777777777776


Q ss_pred             CCccccccCCCcEEeccCCcCcccCccccCcccCceeecccc-cccccchhhhcCCCCCEEEccCCCCccCccccCCCCC
Q psy3567          92 FPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN-LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH  170 (277)
Q Consensus        92 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~  170 (277)
                      +|  +..+++|++|++++|.++.++  ++.+++|++++++.| .+..+  .+..+++|++|++++|.++.+|  +..+++
T Consensus       121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~  192 (457)
T 3bz5_A          121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKL  192 (457)
T ss_dssp             CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTT
T ss_pred             ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCC
Confidence            54  667777777777777776653  566677777777666 33344  3556667777777777766665  556667


Q ss_pred             CCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567         171 LDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       171 L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      |+.|++++|.++.++  ++.+ .+++|++++|+++.+|  ++.+++|+.|++++|.++
T Consensus       193 L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          193 LNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             CCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence            777777777666553  3333 3667777777777665  566667777777777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=3e-22  Score=182.28  Aligned_cols=187  Identities=22%  Similarity=0.372  Sum_probs=158.8

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccc
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNC  132 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~  132 (277)
                      .+++.|++++|.++.+|..++   ++|++|++++|+++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence            489999999999999987653   78999999999999888   457899999999999998887 655  899999999


Q ss_pred             ccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccC
Q psy3567         133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISE  212 (277)
Q Consensus       133 n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~  212 (277)
                      |.+..+|.   .+++|+.|++++|.++.+|.   .+++|++|++++|.++.+|. +. .+++.|++++|+|+.+|. +..
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~  200 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP-ESLEALDVSTNLLESLPA-VPV  200 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCSSCCC-CC-
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh-CCCCEEECcCCCCCchhh-HHH
Confidence            99998887   67899999999999998876   56899999999999998888 55 569999999999999988 554


Q ss_pred             CCCC-------CEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccccccc
Q psy3567         213 CVRL-------KILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDG  261 (277)
Q Consensus       213 ~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~  261 (277)
                        +|       +.|++++|.++  .+|..+..+++|+.|++++|++++..+..+..
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             ---------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             --hhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence              77       99999999997  78988888999999999999998765554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=6.5e-22  Score=180.82  Aligned_cols=224  Identities=17%  Similarity=0.191  Sum_probs=181.0

Q ss_pred             CCCCCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCC
Q psy3567          11 DPSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKIS   90 (277)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~   90 (277)
                      +...+++++|++++|.+.+ +|..              +..+ .|++|++++|.+..+|..  .+ ++|+.|++++|.+.
T Consensus       278 ~~~l~~L~~L~l~~~~l~~-l~~~--------------~~~~-~L~~L~l~~n~~~~l~~~--~l-~~L~~L~l~~n~~~  338 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIER-VKDF--------------SYNF-GWQHLELVNCKFGQFPTL--KL-KSLKRLTFTSNKGG  338 (570)
T ss_dssp             TGGGTTCSEEEEESCEECS-CCBC--------------CSCC-CCSEEEEESCBCSSCCBC--BC-SSCCEEEEESCBSC
T ss_pred             hcCcCcccEEEecCccchh-hhhh--------------hccC-CccEEeeccCcccccCcc--cc-cccCEEeCcCCccc
Confidence            3345789999999998763 4432              3445 789999999999988862  33 88999999999877


Q ss_pred             cCCccccccCCCcEEeccCCcCccc---CccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCc--ccc
Q psy3567          91 KFPLDLASYQLLKSLTFDQNKIESL---PKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP--TVL  165 (277)
Q Consensus        91 ~~~~~~~~l~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~--~~l  165 (277)
                      ...+. ..+++|++|++++|.+...   +..+..+++|++|++++|.+..++..+..+++|++|++++|.+...+  ..+
T Consensus       339 ~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          339 NAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             CBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred             ccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhh
Confidence            44333 6789999999999998865   56788899999999999998888767888999999999999888653  356


Q ss_pred             CCCCCCCEEEccCCCCcc-cCchhccc-eeeEEEccCCccC--cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCc
Q psy3567         166 FNLQHLDVLDLSFNRIES-IPDGIGKM-KVIEMNLNKNQIC--HISPDISECVRLKILRLEENCLAINAIPTCILTSSNV  241 (277)
Q Consensus       166 ~~~~~L~~L~l~~n~l~~-l~~~~~~~-~l~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  241 (277)
                      ..+++|++|++++|.++. .|..+..+ .+++|++++|+++  .+|..+..+++|+.|++++|.++ +..|..+..+++|
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L  496 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL  496 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc-cCChhhhhcccCC
Confidence            788999999999998885 45555555 4999999999987  58888999999999999999998 5667888899999


Q ss_pred             cEEEcCCCeeeecc
Q psy3567         242 CTLNVEGNLFEMKA  255 (277)
Q Consensus       242 ~~l~l~~n~~~~~~  255 (277)
                      ++|++++|.+++..
T Consensus       497 ~~L~l~~n~l~~~~  510 (570)
T 2z63_A          497 QVLNMASNQLKSVP  510 (570)
T ss_dssp             CEEECCSSCCSCCC
T ss_pred             CEEeCCCCcCCCCC
Confidence            99999999887643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=5.5e-22  Score=189.45  Aligned_cols=238  Identities=19%  Similarity=0.220  Sum_probs=153.1

Q ss_pred             CCceeEecCCCCcCCCCCCce------eeeccCCcc----h-hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEE
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTI------FVLKMGNSA----T-KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLD   83 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~----~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~   83 (277)
                      +++++|++++|.+++..+.++      ..+.+..+.    + +..|.++++|++|++++|+++.+++..+..+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            578889999999887766544      455555541    2 46688888888888888888866433333348888888


Q ss_pred             ccCCCCCc-CCcc--ccccCCCcEEeccCCcCccc--CccccCcccCceeeccccccccc-chhhhcC--CC--------
Q psy3567          84 ISQNKISK-FPLD--LASYQLLKSLTFDQNKIESL--PKDIGTLEKLENVSGNCNLIKEL-PLSFSKL--HN--------  147 (277)
Q Consensus        84 l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l--~~--------  147 (277)
                      +++|.+.. +|..  +.++++|++|++++|.+..+  +..++.+++|++|++++|.+..+ +..+..+  ++        
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            88888874 4443  78888888888888888765  24678888888888888877643 3334333  33        


Q ss_pred             ----------------------CCEEEccCCCCc-cCccccC------------------------------------C-
Q psy3567         148 ----------------------LKHLSLSQNQLN-KFPTVLF------------------------------------N-  167 (277)
Q Consensus       148 ----------------------L~~L~l~~n~l~-~~~~~l~------------------------------------~-  167 (277)
                                            |+.|++++|.+. ..+..+.                                    . 
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence                                  444444444332 1111000                                    0 


Q ss_pred             -CCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCC-cCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567         168 -LQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCILTSSNVCT  243 (277)
Q Consensus       168 -~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (277)
                       .++|++|++++|.++.+ +..+..+ .+++|++++|+++.++ ..+..+++|++|++++|.++ +..|..+..+++|++
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCE
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCE
Confidence             13566666666666543 2333334 3667777777776554 34666777777777777776 444666777777777


Q ss_pred             EEcCCCeeee
Q psy3567         244 LNVEGNLFEM  253 (277)
Q Consensus       244 l~l~~n~~~~  253 (277)
                      |++++|.++.
T Consensus       343 L~L~~N~i~~  352 (844)
T 3j0a_A          343 IDLQKNHIAI  352 (844)
T ss_dssp             EECCSCCCCC
T ss_pred             EECCCCCCCc
Confidence            7777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=8.1e-22  Score=179.46  Aligned_cols=187  Identities=28%  Similarity=0.392  Sum_probs=163.0

Q ss_pred             CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc
Q psy3567          16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD   95 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~   95 (277)
                      +++.|++++|++++ +|..+                .++|++|++++|+|+.+| .   .+++|++|++++|+++.+|. 
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l----------------~~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-  117 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL----------------PPQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE-  117 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC----------------CTTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-
T ss_pred             CccEEEeCCCCCCc-cCHhH----------------cCCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-
Confidence            68889999999887 66544                257999999999999999 2   34899999999999999888 


Q ss_pred             ccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEE
Q psy3567          96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLD  175 (277)
Q Consensus        96 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~  175 (277)
                      +..  +|++|++++|.++.+|.   .+++|++|++++|.+..+|.   .+++|++|++++|.++.+|. +.  ++|++|+
T Consensus       118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~  186 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD  186 (571)
T ss_dssp             CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred             hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence            655  99999999999999887   68899999999999999886   57899999999999999988 55  8999999


Q ss_pred             ccCCCCcccCchhcccee-------eEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCC
Q psy3567         176 LSFNRIESIPDGIGKMKV-------IEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS  238 (277)
Q Consensus       176 l~~n~l~~l~~~~~~~~l-------~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~  238 (277)
                      +++|.++.+|. +.. .+       +.|++++|+|+.+|..+..+++|+.|++++|+++ +.+|..+..+
T Consensus       187 Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l  253 (571)
T 3cvr_A          187 VSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQ  253 (571)
T ss_dssp             CCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC-HHHHHHHHHH
T ss_pred             CcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC-CcCHHHHHHh
Confidence            99999999988 544 67       9999999999999999888999999999999998 6777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=8.2e-22  Score=164.13  Aligned_cols=213  Identities=23%  Similarity=0.348  Sum_probs=172.8

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccc
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN  133 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n  133 (277)
                      .+..+.+.++.+..... ...+ ++++.|++.+|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus        20 ~l~~l~l~~~~~~~~~~-~~~l-~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT-QNEL-NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC-HHHH-TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred             HHHHHHhcCcccccccc-cccc-cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence            34445666666665433 3445 88999999999988765 4788999999999999998764 7888999999999999


Q ss_pred             cccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcC
Q psy3567         134 LIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPD  209 (277)
Q Consensus       134 ~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~  209 (277)
                      .+..++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++... ..+ .+++|++++|+++.++..
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            9998765 478899999999999999987654 678899999999999999877653 445 499999999999988776


Q ss_pred             -ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec--cccccccchhhhhhhhh
Q psy3567         210 -ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK--AFQQLDGYNNYMDSELQ  271 (277)
Q Consensus       210 -l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~l~~~~~~~~~~~~  271 (277)
                       +..+++|++|++++|.++ +..+..+..+++|++|++++|++.+.  .++.++.+.+.+.+.+|
T Consensus       176 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBB
T ss_pred             HhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCccc
Confidence             688999999999999998 45556678899999999999999864  35667777777766655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=6.6e-22  Score=168.30  Aligned_cols=197  Identities=19%  Similarity=0.227  Sum_probs=166.6

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE  126 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~  126 (277)
                      ..+..+++|++|++++|.++.+++..+..+++|++|++++|++...++ +..+++|++|++++|.+..++    ..++|+
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~  102 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE  102 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence            445667799999999999998886555555999999999999986665 899999999999999998765    348999


Q ss_pred             eeecccccccccchhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccC-chhc-cc-eeeEEEccCCc
Q psy3567         127 NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIP-DGIG-KM-KVIEMNLNKNQ  202 (277)
Q Consensus       127 ~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~-~~~~-~~-~l~~L~l~~n~  202 (277)
                      +|++++|.+..++..  .+++|++|++++|.+..+++ .+..+++|++|++++|.++.++ ..+. .+ .+++|++++|+
T Consensus       103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            999999999877533  36889999999999998754 6677899999999999999654 3343 33 59999999999


Q ss_pred             cCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         203 ICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       203 l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++.++... .+++|++|++++|.++  .+|..+..+++|++|++++|.++.
T Consensus       181 l~~~~~~~-~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          181 IYDVKGQV-VFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CCEEECCC-CCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             Cccccccc-ccccCCEEECCCCcCC--cchhhhcccCcccEEECcCCcccc
Confidence            99886543 5899999999999997  677778999999999999998874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=172.79  Aligned_cols=197  Identities=16%  Similarity=0.140  Sum_probs=146.2

Q ss_pred             cCccCEEEeecCCCCc--CCh--hHHHhhccccEEEccCCCCC-cCCccc--cccCCCcEEeccCCcCccc-C----ccc
Q psy3567          52 AKKTGVINLSHQGFKE--FPD--EMNELKAVLRTLDISQNKIS-KFPLDL--ASYQLLKSLTFDQNKIESL-P----KDI  119 (277)
Q Consensus        52 ~~~L~~L~l~~~~i~~--~~~--~~~~~~~~L~~L~l~~~~i~-~~~~~~--~~l~~L~~L~l~~~~i~~~-~----~~~  119 (277)
                      ...++.+.+.++.+..  +..  ..... ++|++|++++|.+. ..|..+  ..+++|++|++++|.+... +    ..+
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3456788888887761  111  11222 66999999999887 445555  7888999999999988742 2    244


Q ss_pred             cCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCcc---Cc--cccCCCCCCCEEEccCCCCcccCch----hc
Q psy3567         120 GTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNK---FP--TVLFNLQHLDVLDLSFNRIESIPDG----IG  189 (277)
Q Consensus       120 ~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~---~~--~~l~~~~~L~~L~l~~n~l~~l~~~----~~  189 (277)
                      ..+++|++|++++|.+..++ ..+..+++|++|++++|.+..   ++  ..+..+++|++|++++|.++.++..    +.
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            56888999999999988765 568888999999999998753   32  2235788899999999988765543    23


Q ss_pred             cc-eeeEEEccCCccCcC-CcCccCC---CCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         190 KM-KVIEMNLNKNQICHI-SPDISEC---VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       190 ~~-~l~~L~l~~n~l~~l-~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      .+ .+++|++++|+++.+ |..+..+   ++|++|++++|.++  .+|..+.  ++|++|++++|.+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCC
Confidence            33 488999999999876 6666665   68999999999887  6777664  789999999998886

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.2e-22  Score=161.70  Aligned_cols=186  Identities=17%  Similarity=0.233  Sum_probs=159.9

Q ss_pred             CCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCc-CcccCc-cccCcccCceeeccc-ccccccc
Q psy3567          64 GFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNK-IESLPK-DIGTLEKLENVSGNC-NLIKELP  139 (277)
Q Consensus        64 ~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~-~~~~l~~L~~L~l~~-n~~~~l~  139 (277)
                      .++.+|.    .++++++|++++|+++.+++ .|.++++|++|++++|. ++.++. .+..+++|++|++++ |.+..++
T Consensus        22 ~l~~ip~----~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           22 DIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             SCSSCCC----CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             CccccCC----CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            3888887    33689999999999998877 68999999999999997 988865 789999999999998 9999887


Q ss_pred             h-hhhcCCCCCEEEccCCCCccCccccCCCCCCC---EEEccCC-CCcccCch-hccc-eee-EEEccCCccCcCCcCcc
Q psy3567         140 L-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD---VLDLSFN-RIESIPDG-IGKM-KVI-EMNLNKNQICHISPDIS  211 (277)
Q Consensus       140 ~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~---~L~l~~n-~l~~l~~~-~~~~-~l~-~L~l~~n~l~~l~~~l~  211 (277)
                      . .|..+++|++|++++|.+..+|. +..+++|+   +|++++| .++.++.. +..+ .++ ++++++|+++.+|....
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            4 68899999999999999999987 77888888   9999999 99988765 5555 499 99999999999998755


Q ss_pred             CCCCCCEEEcCCCc-cccCccCccccCC-CCccEEEcCCCeeeecc
Q psy3567         212 ECVRLKILRLEENC-LAINAIPTCILTS-SNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       212 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~  255 (277)
                      ..++|+.|++++|+ ++ ..-+..+..+ ++|++|++++|.++.-.
T Consensus       177 ~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             TTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             CCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCC
Confidence            55899999999995 87 3334568888 99999999999987543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=186.41  Aligned_cols=205  Identities=22%  Similarity=0.258  Sum_probs=115.7

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccCCcCcccCc-cccCccc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQNKIESLPK-DIGTLEK  124 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~  124 (277)
                      ..|..+++|+.|++++|+++.+++..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..++. .+..+++
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  363 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK  363 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence            4456667777777777777765444334346777777777777655 4457777777777777777766543 5666677


Q ss_pred             Cceeecccccccccch-----------------------------------------hhhcCCCCCEEEccCCCCccCcc
Q psy3567         125 LENVSGNCNLIKELPL-----------------------------------------SFSKLHNLKHLSLSQNQLNKFPT  163 (277)
Q Consensus       125 L~~L~l~~n~~~~l~~-----------------------------------------~~~~l~~L~~L~l~~n~l~~~~~  163 (277)
                      |++|++++|.+..++.                                         .+..+++|+.|++++|.+..++.
T Consensus       364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~  443 (844)
T 3j0a_A          364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG  443 (844)
T ss_dssp             CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred             CCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence            7777776666553321                                         12234445555555555443321


Q ss_pred             --ccCCCCCCCEEEccCCCCcccC------chhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCc
Q psy3567         164 --VLFNLQHLDVLDLSFNRIESIP------DGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPT  233 (277)
Q Consensus       164 --~l~~~~~L~~L~l~~n~l~~l~------~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~  233 (277)
                        .+..+++|++|++++|.++..+      ..+..+ .+++|++++|+++.++.. +..+++|+.|++++|.++  .+|.
T Consensus       444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~  521 (844)
T 3j0a_A          444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSH  521 (844)
T ss_dssp             SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS--SCCC
T ss_pred             ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC--ccCh
Confidence              1223444555555555443211      112223 366667777776666554 566777777777777766  2332


Q ss_pred             cccCCCCccEEEcCCCeeeec
Q psy3567         234 CILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       234 ~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      .... ++|+.|++++|.+++.
T Consensus       522 ~~~~-~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          522 NDLP-ANLEILDISRNQLLAP  541 (844)
T ss_dssp             CCCC-SCCCEEEEEEECCCCC
T ss_pred             hhhh-ccccEEECCCCcCCCC
Confidence            2211 5566666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.8e-21  Score=174.89  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=167.9

Q ss_pred             cchhHhhhcc----CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCcc
Q psy3567          43 SATKRHFETA----KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD  118 (277)
Q Consensus        43 ~~~~~~l~~~----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~  118 (277)
                      ..++..+..+    ++|++|++++|.++.+++..+..+++|++|++++|.+...++ +..+++|++|++++|.+..++. 
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-   97 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-   97 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-
Confidence            3444444444    489999999999998876444445999999999999986655 8999999999999999987753 


Q ss_pred             ccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcc-cCchhc-cc-eee
Q psy3567         119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIES-IPDGIG-KM-KVI  194 (277)
Q Consensus       119 ~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~-l~~~~~-~~-~l~  194 (277)
                         .++|++|++++|.+..++..  .+++|+.|++++|.+..+ |..++.+++|++|++++|.++. .|..+. .+ .++
T Consensus        98 ---~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           98 ---GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             ---CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             ---CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence               38999999999999977643  468999999999999976 5577789999999999999996 455554 34 599


Q ss_pred             EEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         195 EMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       195 ~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +|++++|.++.++... .+++|+.|++++|.++  .+|..+..+++|+.|++++|.+++
T Consensus       173 ~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             EEECTTSCCCEEECCC-CCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             EEecCCCccccccccc-cCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCcCcc
Confidence            9999999999886543 5899999999999998  577778999999999999999885

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=5.4e-23  Score=179.61  Aligned_cols=231  Identities=19%  Similarity=0.237  Sum_probs=181.1

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCC----cCChhHH------HhhccccEEE
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK----EFPDEMN------ELKAVLRTLD   83 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~~~~~~~------~~~~~L~~L~   83 (277)
                      .+++++|++++|.+++..+..+          ...+..+++|++|++++|.+.    .+|..+.      ..+++|++|+
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l----------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWL----------SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHH----------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CCCccEEECCCCCCCHHHHHHH----------HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            4678889999888775533322          245778999999999998665    3454442      2238999999


Q ss_pred             ccCCCCCc-----CCccccccCCCcEEeccCCcCcc-----cCccccCc---------ccCceeeccccccc--ccc---
Q psy3567          84 ISQNKISK-----FPLDLASYQLLKSLTFDQNKIES-----LPKDIGTL---------EKLENVSGNCNLIK--ELP---  139 (277)
Q Consensus        84 l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l---------~~L~~L~l~~n~~~--~l~---  139 (277)
                      +++|.+..     +|..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|.+.  .++   
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99999985     66678899999999999999873     23334444         89999999999986  344   


Q ss_pred             hhhhcCCCCCEEEccCCCCc------cCccccCCCCCCCEEEccCCCCc-----ccCchhccc-eeeEEEccCCccCc--
Q psy3567         140 LSFSKLHNLKHLSLSQNQLN------KFPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKM-KVIEMNLNKNQICH--  205 (277)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~------~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~-~l~~L~l~~n~l~~--  205 (277)
                      ..+..+++|++|++++|.+.      -++..+..+++|++|++++|.++     .+|..+... .+++|++++|+++.  
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            46778899999999999988      23337778899999999999994     567666665 49999999999984  


Q ss_pred             ---CCcCc--cCCCCCCEEEcCCCccccC----ccCccc-cCCCCccEEEcCCCeeeecc
Q psy3567         206 ---ISPDI--SECVRLKILRLEENCLAIN----AIPTCI-LTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       206 ---l~~~l--~~~~~L~~L~l~~n~~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~  255 (277)
                         ++..+  +.+++|++|++++|.++ .    .+|..+ .++++|++|++++|.+++..
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~-~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIE-LDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCB-HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCC-HHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence               46666  44899999999999998 3    377777 56899999999999998765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=3.3e-20  Score=152.59  Aligned_cols=172  Identities=23%  Similarity=0.373  Sum_probs=130.4

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeec
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG  130 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l  130 (277)
                      ...++++++++.++.+|..+.   ++++.|++++|++..+++ .+.++++|++|++++|.+..++. .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            456788999998888887543   678899999998887655 58888889999999888887644 5778888888888


Q ss_pred             ccccccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcC
Q psy3567         131 NCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHI  206 (277)
Q Consensus       131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l  206 (277)
                      ++|.+..++. .|..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..+ .+++|++++|+++.+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            8888887764 467788888888888888877654 45678888888888887776653 4444 377777777777766


Q ss_pred             Cc-CccCCCCCCEEEcCCCccc
Q psy3567         207 SP-DISECVRLKILRLEENCLA  227 (277)
Q Consensus       207 ~~-~l~~~~~L~~L~l~~n~~~  227 (277)
                      +. .+..+++|+.|++++|++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHHhCCCCCCEEEeeCCcee
Confidence            65 3666777777777777776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=2.3e-20  Score=156.95  Aligned_cols=171  Identities=26%  Similarity=0.347  Sum_probs=124.5

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCcee
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV  128 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  128 (277)
                      +..+++++.|++++|.+..++. +..+ ++|++|++++|+++.+++ +.++++|++|++++|.+..++. +..+++|++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l-~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQG-IQYL-PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT-GGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hhhcCcccEEEccCCCcccChh-HhcC-CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            4567777888888888777754 4444 778888888888777666 7777888888888887776543 7777778888


Q ss_pred             ecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC
Q psy3567         129 SGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS  207 (277)
Q Consensus       129 ~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~  207 (277)
                      ++++|.+..++ .+..+++|++|++++|.+..+ ..+..+++|++|++++|.++.++. +..+ .+++|++++|+++.++
T Consensus       118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh
Confidence            88877777763 567777788888888777776 456677778888887777776655 4444 4777777777777765


Q ss_pred             cCccCCCCCCEEEcCCCccc
Q psy3567         208 PDISECVRLKILRLEENCLA  227 (277)
Q Consensus       208 ~~l~~~~~L~~L~l~~n~~~  227 (277)
                      . +..+++|+.|++++|+++
T Consensus       195 ~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          195 A-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G-GTTCTTCSEEEEEEEEEE
T ss_pred             h-hccCCCCCEEECcCCccc
Confidence            4 667777777777777776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.2e-20  Score=153.65  Aligned_cols=175  Identities=25%  Similarity=0.381  Sum_probs=149.0

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccch-hhhcCCCCCEEEcc
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLS  154 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~  154 (277)
                      +..+.++++++.++.+|..+.  +.+++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            457889999999999888765  689999999999987754 78899999999999999987754 58889999999999


Q ss_pred             CCCCccCcc-ccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCc
Q psy3567         155 QNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINA  230 (277)
Q Consensus       155 ~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~  230 (277)
                      +|.+..++. .+..+++|++|++++|.++.++... ..+ .+++|++++|+++.++. .+..+++|++|++++|.++ +.
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence            999998764 4568899999999999999887654 444 49999999999998887 4888999999999999998 44


Q ss_pred             cCccccCCCCccEEEcCCCeeeec
Q psy3567         231 IPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       231 ~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      .+..+..+++|++|++++|++++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            455788899999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=4.2e-20  Score=170.49  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=83.9

Q ss_pred             CCceeEecCCCCcCCCCCC------ceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567          15 PSKLTLLLPGKKNRGLIEG------TIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI   84 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   84 (277)
                      +++++|+|++|.+++..+.      .+.++.+.++.+.    .+|.++++|++|+|++|+++.+|+..+..+++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4678888888888765543      3456666666543    46788888888888888888888766555578888888


Q ss_pred             cCCCCCcCCc-cccccCCCcEEeccCCcCcc--cCccccCcccCceeeccccc
Q psy3567          85 SQNKISKFPL-DLASYQLLKSLTFDQNKIES--LPKDIGTLEKLENVSGNCNL  134 (277)
Q Consensus        85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~n~  134 (277)
                      ++|+++.+++ .|.++++|++|++++|.+..  .|..++.+++|++|++++|.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            8888877665 37777777777777777763  34555566666666555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=1.8e-20  Score=157.49  Aligned_cols=189  Identities=23%  Similarity=0.322  Sum_probs=151.1

Q ss_pred             EEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc
Q psy3567          58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE  137 (277)
Q Consensus        58 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~  137 (277)
                      +.+....+..+.. ...+ ++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..
T Consensus        29 ~~l~~~~~~~~~~-~~~l-~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           29 DNLKKKSVTDAVT-QNEL-NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHTTCSCTTSEEC-HHHH-HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HHhcCCCcccccc-hhhc-CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence            3455566665432 2344 88999999999888775 47888999999999999988766 8888999999999998888


Q ss_pred             cchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCC
Q psy3567         138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRL  216 (277)
Q Consensus       138 l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L  216 (277)
                      ++. +..+++|++|++++|.+..+ +.+..+++|++|++++|.++.+ ..+..+ ++++|++++|+++.++. +..+++|
T Consensus       105 ~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L  180 (291)
T 1h6t_A          105 LSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL  180 (291)
T ss_dssp             GGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             Chh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCcc
Confidence            754 88889999999999988887 4577788999999999998877 345554 48899999999998876 8888999


Q ss_pred             CEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccc
Q psy3567         217 KILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ  257 (277)
Q Consensus       217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  257 (277)
                      +.|++++|.++  .++ .+..+++|+.|++++|.++.....
T Consensus       181 ~~L~L~~N~i~--~l~-~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          181 QNLYLSKNHIS--DLR-ALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             CEEECCSSCCC--BCG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             CEEECCCCcCC--CCh-hhccCCCCCEEECcCCcccCCccc
Confidence            99999999887  454 478889999999999988765443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.8e-20  Score=172.47  Aligned_cols=208  Identities=20%  Similarity=0.242  Sum_probs=168.5

Q ss_pred             CCCceeEecCCCCcCCC--CCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc
Q psy3567          14 SPSKLTLLLPGKKNRGL--IEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK   91 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~   91 (277)
                      .+++++|++++|.+++.  .++.+..+.+.++.+...-..+++|+.|++++|+++.+|..+    ++|++|++++|+++.
T Consensus        80 l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l----~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLAS  155 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSC
T ss_pred             CCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCCC----CCCCEEECcCCcCCC
Confidence            46899999999998753  235667777777766543336788999999999999888642    789999999998887


Q ss_pred             CCcccc---cc--------------CCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEcc
Q psy3567          92 FPLDLA---SY--------------QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLS  154 (277)
Q Consensus        92 ~~~~~~---~l--------------~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~  154 (277)
                      +|..+.   .+              ++|+.|++++|.+..+|..   .++|+.|++++|.+..+|..   +++|+.|+++
T Consensus       156 l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls  229 (622)
T 3g06_A          156 LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVS  229 (622)
T ss_dssp             CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred             cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEcc
Confidence            655432   23              7788899999988887753   47899999999999988753   4789999999


Q ss_pred             CCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcc
Q psy3567         155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTC  234 (277)
Q Consensus       155 ~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~  234 (277)
                      +|.++.+|   ..+++|+.|++++|.++.+|.  ....+++|++++|+++.+|..+..+++|+.|++++|+++ +..|..
T Consensus       230 ~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~-~~~~~~  303 (622)
T 3g06_A          230 GNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQA  303 (622)
T ss_dssp             SSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC-HHHHHH
T ss_pred             CCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC-CcCHHH
Confidence            99999988   456899999999999999887  233599999999999999999999999999999999998 555555


Q ss_pred             ccC
Q psy3567         235 ILT  237 (277)
Q Consensus       235 ~~~  237 (277)
                      +..
T Consensus       304 l~~  306 (622)
T 3g06_A          304 LRE  306 (622)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=5.1e-21  Score=165.75  Aligned_cols=230  Identities=17%  Similarity=0.157  Sum_probs=174.6

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccC-ccCEEEeecCCCCcCCh-hHHHh----hccccEEEccCCC
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAK-KTGVINLSHQGFKEFPD-EMNEL----KAVLRTLDISQNK   88 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~-~~~~~----~~~L~~L~l~~~~   88 (277)
                      .++++|++++|.+++..+..+          ...|..++ +|++|++++|+++.... .+...    +++|++|++++|+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l----------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVEL----------IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHH----------HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             CCceEEEccCCCCChHHHHHH----------HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            458888888888776644322          25678888 89999999999996643 33332    2789999999999


Q ss_pred             CCcCCcc-----cccc-CCCcEEeccCCcCcccCc-c----ccC-cccCceeecccccccc-----cchhhhcCC-CCCE
Q psy3567          89 ISKFPLD-----LASY-QLLKSLTFDQNKIESLPK-D----IGT-LEKLENVSGNCNLIKE-----LPLSFSKLH-NLKH  150 (277)
Q Consensus        89 i~~~~~~-----~~~l-~~L~~L~l~~~~i~~~~~-~----~~~-l~~L~~L~l~~n~~~~-----l~~~~~~l~-~L~~  150 (277)
                      ++..+..     +..+ ++|++|++++|.+...+. .    +.. ..+|++|++++|.+..     ++..+...+ +|++
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            9865443     4444 899999999999986543 2    334 3689999999999883     445566666 9999


Q ss_pred             EEccCCCCccCcc-----ccCCC-CCCCEEEccCCCCcc-----cCchhcc-c-eeeEEEccCCccCcCCc-----CccC
Q psy3567         151 LSLSQNQLNKFPT-----VLFNL-QHLDVLDLSFNRIES-----IPDGIGK-M-KVIEMNLNKNQICHISP-----DISE  212 (277)
Q Consensus       151 L~l~~n~l~~~~~-----~l~~~-~~L~~L~l~~n~l~~-----l~~~~~~-~-~l~~L~l~~n~l~~l~~-----~l~~  212 (277)
                      |++++|.++....     .+..+ ++|++|++++|.++.     ++..+.. . .+++|++++|.++..+.     .+..
T Consensus       172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~  251 (362)
T 3goz_A          172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS  251 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred             eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence            9999999985532     34455 599999999999985     5555544 3 59999999999986543     4577


Q ss_pred             CCCCCEEEcCCCccc------cCccCccccCCCCccEEEcCCCeeeec
Q psy3567         213 CVRLKILRLEENCLA------INAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       213 ~~~L~~L~l~~n~~~------~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      +++|+.|++++|.+.      ...++..+..+++|+++++++|.+...
T Consensus       252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            899999999999843      113344567788999999999999876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=6.7e-22  Score=176.25  Aligned_cols=208  Identities=15%  Similarity=0.165  Sum_probs=132.9

Q ss_pred             HhhhccCccCEEEeecCCCCcCC-hhHHH----hhccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCccc-
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFP-DEMNE----LKAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIESL-  115 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~-~~~~~----~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~~-  115 (277)
                      ..+..+++|++|++++|.+.... ..+..    ..++|++|++++|.++.     ++..+..+++|++|++++|.+... 
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            34455666677777766665221 11221    12367777777776664     344566677777777777776532 


Q ss_pred             ----Cc-cccCcccCceeecccccccc-----cchhhhcCCCCCEEEccCCCCcc-----CccccC-CCCCCCEEEccCC
Q psy3567         116 ----PK-DIGTLEKLENVSGNCNLIKE-----LPLSFSKLHNLKHLSLSQNQLNK-----FPTVLF-NLQHLDVLDLSFN  179 (277)
Q Consensus       116 ----~~-~~~~l~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~l~~-----~~~~l~-~~~~L~~L~l~~n  179 (277)
                          .. .+..+++|++|++++|.+..     ++..+..+++|++|++++|.+..     +...+. ..++|++|++++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                12 22346777788877777764     55666677788888888877752     222222 2357888888888


Q ss_pred             CCcc-----cCchhccc-eeeEEEccCCccCcCC-c----CccC-CCCCCEEEcCCCcccc---CccCccccCCCCccEE
Q psy3567         180 RIES-----IPDGIGKM-KVIEMNLNKNQICHIS-P----DISE-CVRLKILRLEENCLAI---NAIPTCILTSSNVCTL  244 (277)
Q Consensus       180 ~l~~-----l~~~~~~~-~l~~L~l~~n~l~~l~-~----~l~~-~~~L~~L~l~~n~~~~---~~~~~~~~~~~~L~~l  244 (277)
                      .++.     ++..+... .+++|++++|+++... .    .+.. .++|++|++++|.++.   ..+|..+..+++|++|
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            7763     34444443 4888888888887432 2    2222 6788899999888872   1567777788899999


Q ss_pred             EcCCCeeeec
Q psy3567         245 NVEGNLFEMK  254 (277)
Q Consensus       245 ~l~~n~~~~~  254 (277)
                      ++++|.++..
T Consensus       404 ~l~~N~i~~~  413 (461)
T 1z7x_W          404 DLSNNCLGDA  413 (461)
T ss_dssp             ECCSSSCCHH
T ss_pred             ECCCCCCCHH
Confidence            9999988765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=4.7e-20  Score=169.33  Aligned_cols=171  Identities=26%  Similarity=0.345  Sum_probs=131.3

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCcee
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV  128 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  128 (277)
                      +..++.|+.|++++|.+..+++ +..+ ++|+.|++++|++..+++ +..+++|++|++++|.+..++ .+..+++|++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~-l~~l-~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQG-IQYL-PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTT-GGGC-TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCCCCCCChH-HccC-CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence            4667778888888888887764 4444 788888888888887766 778888888888888887765 67778888888


Q ss_pred             ecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC
Q psy3567         129 SGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS  207 (277)
Q Consensus       129 ~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~  207 (277)
                      ++++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.++. +..+ .|++|++++|+++.++
T Consensus       115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          115 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             EecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence            88888887764 577788888888888888777 566777888888888888876655 4444 4788888888888774


Q ss_pred             cCccCCCCCCEEEcCCCccc
Q psy3567         208 PDISECVRLKILRLEENCLA  227 (277)
Q Consensus       208 ~~l~~~~~L~~L~l~~n~~~  227 (277)
                       .+..+++|+.|+|++|++.
T Consensus       192 -~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          192 -ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             -GGTTCTTCSEEECCSEEEE
T ss_pred             -HHccCCCCCEEEccCCcCc
Confidence             4677788888888888776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=3.8e-20  Score=153.31  Aligned_cols=168  Identities=24%  Similarity=0.330  Sum_probs=138.4

Q ss_pred             ccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeec
Q psy3567          51 TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSG  130 (277)
Q Consensus        51 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l  130 (277)
                      .+.++..++++++.++.++ .+..+ ++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l-~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKEL-SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHH-TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhc-CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            3555667788888888877 35555 88999999999998887 68889999999999999988876 888999999999


Q ss_pred             ccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcC
Q psy3567         131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPD  209 (277)
Q Consensus       131 ~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~  209 (277)
                      ++|.+..++....  ++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+ ++++|++++|+++.+ ..
T Consensus        93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~  167 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG  167 (263)
T ss_dssp             CSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred             CCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence            9999888765333  88999999999988875 5778889999999999988876 44444 488899999998887 66


Q ss_pred             ccCCCCCCEEEcCCCccc
Q psy3567         210 ISECVRLKILRLEENCLA  227 (277)
Q Consensus       210 l~~~~~L~~L~l~~n~~~  227 (277)
                      +..+++|+.|++++|+++
T Consensus       168 l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             STTCCCCCEEEEEEEEEE
T ss_pred             hccCCCCCEEeCCCCccc
Confidence            788888999999998887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=5.7e-21  Score=163.48  Aligned_cols=217  Identities=14%  Similarity=0.101  Sum_probs=136.1

Q ss_pred             ceeEecCCCCcCCCCCCceeeeccCCcchhHhhhcc--CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc--C
Q psy3567          17 KLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETA--KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK--F   92 (277)
Q Consensus        17 l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~--~   92 (277)
                      .++++++++.+..                 ..+..+  +.++.++++++.+...++.++.+ ++|++|++++|.+..  +
T Consensus        49 ~~~l~l~~~~~~~-----------------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           49 WQTLDLTGKNLHP-----------------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             SSEEECTTCBCCH-----------------HHHHHHHHTTCSEEECTTCEECSCCCSCCCC-BCCCEEECTTCEECHHHH
T ss_pred             heeeccccccCCH-----------------HHHHhhhhccceEEEcCCccccccchhhccC-CCCCEEEccCCCcCHHHH
Confidence            5567777665541                 234444  66777777777776555555554 677777777777652  5


Q ss_pred             CccccccCCCcEEeccCCcCc-ccCccccCcccCceeecccc-ccc--ccchhhhcCCCCCEEEccCC-CCcc--Ccccc
Q psy3567          93 PLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCN-LIK--ELPLSFSKLHNLKHLSLSQN-QLNK--FPTVL  165 (277)
Q Consensus        93 ~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n-~~~--~l~~~~~~l~~L~~L~l~~n-~l~~--~~~~l  165 (277)
                      +..+..+++|++|++++|.+. ..+..++.+++|++|++++| .+.  .++..+..+++|++|++++| .++.  ++..+
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  190 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  190 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence            555667777777777777766 34556666777777777776 454  24555666777777777777 6663  45555


Q ss_pred             CCCC-CCCEEEccCC--CCc--ccCchhccc-eeeEEEccCCc-cC-cCCcCccCCCCCCEEEcCCCc-cccCccCcccc
Q psy3567         166 FNLQ-HLDVLDLSFN--RIE--SIPDGIGKM-KVIEMNLNKNQ-IC-HISPDISECVRLKILRLEENC-LAINAIPTCIL  236 (277)
Q Consensus       166 ~~~~-~L~~L~l~~n--~l~--~l~~~~~~~-~l~~L~l~~n~-l~-~l~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~  236 (277)
                      ..++ +|++|++++|  .++  .++..+..+ ++++|++++|. ++ ..+..+..+++|++|++++|. ++. .....+.
T Consensus       191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~  269 (336)
T 2ast_B          191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELG  269 (336)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGG
T ss_pred             HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHh
Confidence            5666 7777777777  343  345444444 37777777777 44 445556677777777777773 331 1113456


Q ss_pred             CCCCccEEEcCCCeeee
Q psy3567         237 TSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       237 ~~~~L~~l~l~~n~~~~  253 (277)
                      ++++|++|++++| ++.
T Consensus       270 ~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          270 EIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GCTTCCEEECTTS-SCT
T ss_pred             cCCCCCEEeccCc-cCH
Confidence            6777777777777 554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.6e-19  Score=165.86  Aligned_cols=168  Identities=23%  Similarity=0.326  Sum_probs=84.1

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCC
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN  156 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n  156 (277)
                      ++|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|+.|++++|
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence            45555555555555443 34455555555555555554443 445555555555555555443 3445555555555555


Q ss_pred             CCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccc
Q psy3567         157 QLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCI  235 (277)
Q Consensus       157 ~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  235 (277)
                      .+..++ .+..+++|+.|++++|.++.+ ..+..+ .|+.|++++|+++.++. +..+++|+.|+|++|.+.  .+ ..+
T Consensus       120 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~--~l-~~l  193 (605)
T 1m9s_A          120 GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--DL-RAL  193 (605)
T ss_dssp             CCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--BC-GGG
T ss_pred             CCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC--CC-hHH
Confidence            555442 344455555555555555544 223332 25555555555554444 445555555555555554  22 234


Q ss_pred             cCCCCccEEEcCCCeeee
Q psy3567         236 LTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       236 ~~~~~L~~l~l~~n~~~~  253 (277)
                      ..+++|+.|+|++|.++.
T Consensus       194 ~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCTTCSEEECCSEEEEC
T ss_pred             ccCCCCCEEEccCCcCcC
Confidence            455555555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=8.5e-19  Score=161.73  Aligned_cols=245  Identities=17%  Similarity=0.186  Sum_probs=191.3

Q ss_pred             CCceeEecCCCCcCCCCCCce---eeeccCCcchh--HhhhccCccCEEEeecCCCC---cCChhHHHhhccccEEEccC
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTI---FVLKMGNSATK--RHFETAKKTGVINLSHQGFK---EFPDEMNELKAVLRTLDISQ   86 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~---~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~---~~~~~~~~~~~~L~~L~l~~   86 (277)
                      .+++.|++.+|.+.+..+..+   ..+.+..+...  .....++.++++++++|.+.   ..+...... .+++.+++..
T Consensus       328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~  406 (635)
T 4g8a_A          328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSF  406 (635)
T ss_dssp             CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCS
T ss_pred             hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh-hhhhhhhccc
Confidence            467778888887665544322   23333222221  23456789999999999887   345555555 8899999999


Q ss_pred             CCCCcCCccccccCCCcEEeccCCcCccc--CccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCc-c-C
Q psy3567          87 NKISKFPLDLASYQLLKSLTFDQNKIESL--PKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLN-K-F  161 (277)
Q Consensus        87 ~~i~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~-~-~  161 (277)
                      +.+..++..+..+++|+.+++..+.....  ...+..+.+++.++++.|.+..+ +..+..++.++.|++++|... . .
T Consensus       407 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~  486 (635)
T 4g8a_A          407 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  486 (635)
T ss_dssp             CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence            98887788888999999999998876644  34678899999999999999865 456888999999999999755 3 4


Q ss_pred             ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCC
Q psy3567         162 PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTS  238 (277)
Q Consensus       162 ~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~  238 (277)
                      |..+..+++|++|++++|.++.+ |..+..+ .|++|++++|+++.++.. +..+++|++|++++|.++ +..|..+..+
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l  565 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF  565 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC-BCCSSCTTCC
T ss_pred             chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC-CCCHHHHHhh
Confidence            67788899999999999999976 4556666 499999999999998765 889999999999999998 6667788887


Q ss_pred             -CCccEEEcCCCeeeec-ccccccc
Q psy3567         239 -SNVCTLNVEGNLFEMK-AFQQLDG  261 (277)
Q Consensus       239 -~~L~~l~l~~n~~~~~-~~~~l~~  261 (277)
                       ++|++|++++|++++. .+..+..
T Consensus       566 ~~~L~~L~L~~Np~~C~C~~~~~~~  590 (635)
T 4g8a_A          566 PSSLAFLNLTQNDFACTCEHQSFLQ  590 (635)
T ss_dssp             CTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             hCcCCEEEeeCCCCcccCCcHHHHH
Confidence             6899999999999974 3444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=1.6e-19  Score=149.56  Aligned_cols=154  Identities=23%  Similarity=0.305  Sum_probs=119.9

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN  127 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~  127 (277)
                      .+..+++|++|++++|.++.++ .+..+ ++|+.|++++|+++.+++ +..+++|++|++++|++..++....  ++|++
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l-~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA-GMQFF-TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             chhhcCcCcEEECcCCCcccch-HHhhC-CCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            3677888888888888888877 45555 888888888888887776 8888888888888888887765333  78888


Q ss_pred             eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcC
Q psy3567         128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHI  206 (277)
Q Consensus       128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l  206 (277)
                      |++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+ ..+..+ +++.|++++|.++..
T Consensus       111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             EEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            888888888775 5778888888888888888775 577788888888888888876 334444 488888888888766


Q ss_pred             CcC
Q psy3567         207 SPD  209 (277)
Q Consensus       207 ~~~  209 (277)
                      |..
T Consensus       188 ~~~  190 (263)
T 1xeu_A          188 PVK  190 (263)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.2e-19  Score=142.48  Aligned_cols=175  Identities=26%  Similarity=0.374  Sum_probs=130.1

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeecccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCN  133 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n  133 (277)
                      +.++++++.++.+|..+   .+++++|++++|+++.+++. +..+++|++|++++|++..++. .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            56788888888888644   26788888888888877664 6788888888888888887755 4677888888888888


Q ss_pred             cccccchh-hhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC
Q psy3567         134 LIKELPLS-FSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD  209 (277)
Q Consensus       134 ~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~  209 (277)
                      .+..++.. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..+ ++++|++++|.+.     
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            88877643 67788888888888888877654 56778888888888888776654 3434 4777888777554     


Q ss_pred             ccCCCCCCEEEcCCCccccCccCccccCCCC
Q psy3567         210 ISECVRLKILRLEENCLAINAIPTCILTSSN  240 (277)
Q Consensus       210 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  240 (277)
                       +.+++|+.|+++.|.++ +.+|..+..++.
T Consensus       162 -~~~~~l~~L~~~~n~~~-g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 -CTCPGIRYLSEWINKHS-GVVRNSAGSVAP  190 (208)
T ss_dssp             -CCTTTTHHHHHHHHHCT-TTBBCTTSSBCT
T ss_pred             -cCCCCHHHHHHHHHhCC-ceeeccCccccC
Confidence             34567777888888777 677776665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=1.9e-20  Score=163.40  Aligned_cols=209  Identities=20%  Similarity=0.206  Sum_probs=167.5

Q ss_pred             CCCCCCceeEecCCCC---cCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCc-----CChhHHHhhccccEE
Q psy3567          11 DPSSPSKLTLLLPGKK---NRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKE-----FPDEMNELKAVLRTL   82 (277)
Q Consensus        11 ~~~~~~l~~l~l~~~~---~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~~L~~L   82 (277)
                      +...+++++|++++|.   +.+.+|..+..+       ...+..+++|++|++++|.+..     +|..+..+ ++|++|
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l-------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L  127 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLL-------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHL  127 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-------HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEE
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHH-------HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhC-CCCCEE
Confidence            4456789999999964   445555554322       3667899999999999999986     66666666 999999


Q ss_pred             EccCCCCCc-----CCcccccc---------CCCcEEeccCCcCc--ccC---ccccCcccCceeecccccccc-----c
Q psy3567          83 DISQNKISK-----FPLDLASY---------QLLKSLTFDQNKIE--SLP---KDIGTLEKLENVSGNCNLIKE-----L  138 (277)
Q Consensus        83 ~l~~~~i~~-----~~~~~~~l---------~~L~~L~l~~~~i~--~~~---~~~~~l~~L~~L~l~~n~~~~-----l  138 (277)
                      ++++|.++.     ++..+..+         ++|++|++++|++.  .++   ..+..+++|++|++++|.+..     +
T Consensus       128 ~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence            999999873     23334444         89999999999997  334   467788999999999999872     3


Q ss_pred             -chhhhcCCCCCEEEccCCCCc-----cCccccCCCCCCCEEEccCCCCcc-----cCchhcc--c-eeeEEEccCCccC
Q psy3567         139 -PLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDLSFNRIES-----IPDGIGK--M-KVIEMNLNKNQIC  204 (277)
Q Consensus       139 -~~~~~~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~--~-~l~~L~l~~n~l~  204 (277)
                       +..+..+++|++|++++|.++     .+|..+..+++|++|++++|.++.     ++..+..  . ++++|++++|.++
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence             337888999999999999994     567788889999999999999983     4555522  4 5999999999999


Q ss_pred             c-----CCcCc-cCCCCCCEEEcCCCccc
Q psy3567         205 H-----ISPDI-SECVRLKILRLEENCLA  227 (277)
Q Consensus       205 ~-----l~~~l-~~~~~L~~L~l~~n~~~  227 (277)
                      .     +|..+ ..+++|++|++++|+++
T Consensus       288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          288 LDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            7     88876 66899999999999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=7.4e-20  Score=156.53  Aligned_cols=225  Identities=14%  Similarity=0.158  Sum_probs=169.7

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCc--CChhHHHhhccccEEEccCCCCC-c
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKE--FPDEMNELKAVLRTLDISQNKIS-K   91 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~i~-~   91 (277)
                      +.++.+++++|.+.+..+.               +..+++|++|++++|.+..  ++..+..+ ++|++|++++|.++ .
T Consensus        70 ~~l~~L~l~~n~l~~~~~~---------------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~  133 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE---------------HFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDP  133 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS---------------CCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHH
T ss_pred             ccceEEEcCCccccccchh---------------hccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHH
Confidence            5788999999998877554               2357889999999998873  55544444 89999999999887 4


Q ss_pred             CCccccccCCCcEEeccCC-cCcc--cCccccCcccCceeecccc-cccc--cchhhhcCC-CCCEEEccCCC--Cc--c
Q psy3567          92 FPLDLASYQLLKSLTFDQN-KIES--LPKDIGTLEKLENVSGNCN-LIKE--LPLSFSKLH-NLKHLSLSQNQ--LN--K  160 (277)
Q Consensus        92 ~~~~~~~l~~L~~L~l~~~-~i~~--~~~~~~~l~~L~~L~l~~n-~~~~--l~~~~~~l~-~L~~L~l~~n~--l~--~  160 (277)
                      .+..+.++++|++|++++| .++.  ++..+..+++|++|++++| .+..  ++..+..++ +|++|++++|.  ++  .
T Consensus       134 ~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~  213 (336)
T 2ast_B          134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD  213 (336)
T ss_dssp             HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence            5666888999999999999 6773  5666788999999999999 7774  566788899 99999999994  43  4


Q ss_pred             CccccCCCCCCCEEEccCCC-Cc-ccCchhccc-eeeEEEccCCc-cCc-CCcCccCCCCCCEEEcCCCccccCccCccc
Q psy3567         161 FPTVLFNLQHLDVLDLSFNR-IE-SIPDGIGKM-KVIEMNLNKNQ-ICH-ISPDISECVRLKILRLEENCLAINAIPTCI  235 (277)
Q Consensus       161 ~~~~l~~~~~L~~L~l~~n~-l~-~l~~~~~~~-~l~~L~l~~n~-l~~-l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  235 (277)
                      ++..+..+++|++|++++|. ++ ..+..+..+ ++++|++++|. ++. ....+..+++|+.|++++| ++...+. .+
T Consensus       214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~-~l  291 (336)
T 2ast_B          214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ-LL  291 (336)
T ss_dssp             HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH-HH
T ss_pred             HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH-HH
Confidence            56666778999999999998 66 455566665 49999999995 331 1124778999999999998 6522222 22


Q ss_pred             cCCCCccEEEcCCCeeeecccccc
Q psy3567         236 LTSSNVCTLNVEGNLFEMKAFQQL  259 (277)
Q Consensus       236 ~~~~~L~~l~l~~n~~~~~~~~~l  259 (277)
                      .  .++..|++++|.+++.....+
T Consensus       292 ~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          292 K--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             H--HHSTTSEESCCCSCCTTCSSC
T ss_pred             H--hhCcceEEecccCccccCCcc
Confidence            1  235566689999887665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=5.8e-20  Score=159.11  Aligned_cols=218  Identities=16%  Similarity=0.166  Sum_probs=162.5

Q ss_pred             EecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCCh----hHHHhhc-cccEEEccCCCCCcCC-
Q psy3567          20 LLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPD----EMNELKA-VLRTLDISQNKISKFP-   93 (277)
Q Consensus        20 l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~l~~~~i~~~~-   93 (277)
                      .+++.++++|.+|.              .+...++|++|++++|.++..+.    ..+...+ +|++|++++|+++... 
T Consensus         3 ~~ls~n~~~~~~~~--------------~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~   68 (362)
T 3goz_A            3 YKLTLHPGSNPVEE--------------FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS   68 (362)
T ss_dssp             EECCCCTTCCHHHH--------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH
T ss_pred             cccccccchHHHHH--------------HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH
Confidence            45666666655332              34555669999999999998774    3333335 8999999999998653 


Q ss_pred             cccccc-----CCCcEEeccCCcCcccCc-c----ccCc-ccCceeecccccccccch-h----hhcC-CCCCEEEccCC
Q psy3567          94 LDLASY-----QLLKSLTFDQNKIESLPK-D----IGTL-EKLENVSGNCNLIKELPL-S----FSKL-HNLKHLSLSQN  156 (277)
Q Consensus        94 ~~~~~l-----~~L~~L~l~~~~i~~~~~-~----~~~l-~~L~~L~l~~n~~~~l~~-~----~~~l-~~L~~L~l~~n  156 (277)
                      ..+..+     ++|++|++++|.++..+. .    +..+ ++|++|++++|.+...+. .    +..+ ++|++|++++|
T Consensus        69 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  148 (362)
T 3goz_A           69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN  148 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred             HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence            346554     999999999999986533 2    4455 899999999999986543 2    3443 59999999999


Q ss_pred             CCc-----cCccccCCCC-CCCEEEccCCCCcccCc-hh----cc--ceeeEEEccCCccCc-----CCcCccC-CCCCC
Q psy3567         157 QLN-----KFPTVLFNLQ-HLDVLDLSFNRIESIPD-GI----GK--MKVIEMNLNKNQICH-----ISPDISE-CVRLK  217 (277)
Q Consensus       157 ~l~-----~~~~~l~~~~-~L~~L~l~~n~l~~l~~-~~----~~--~~l~~L~l~~n~l~~-----l~~~l~~-~~~L~  217 (277)
                      .++     .++..+...+ +|++|++++|.++.... .+    ..  ..+++|++++|+++.     ++..+.. .++|+
T Consensus       149 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~  228 (362)
T 3goz_A          149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV  228 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred             cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence            988     3344555555 99999999999985442 22    22  259999999999996     6666666 46999


Q ss_pred             EEEcCCCccccCc---cCccccCCCCccEEEcCCCee
Q psy3567         218 ILRLEENCLAINA---IPTCILTSSNVCTLNVEGNLF  251 (277)
Q Consensus       218 ~L~l~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~~  251 (277)
                      +|++++|.++...   +...+..+++|+.|++++|.+
T Consensus       229 ~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence            9999999998321   223456778999999999983

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=2.4e-20  Score=166.21  Aligned_cols=238  Identities=16%  Similarity=0.088  Sum_probs=114.9

Q ss_pred             CCceeEecCCCCcCCCCC-------C----ceeeeccCCcch--------hHhhhccCccCEEEeecCCCCcC-ChhHHH
Q psy3567          15 PSKLTLLLPGKKNRGLIE-------G----TIFVLKMGNSAT--------KRHFETAKKTGVINLSHQGFKEF-PDEMNE   74 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~-------~----~~~~l~~~~~~~--------~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~   74 (277)
                      +++++|++++|.+....+       .    .+..+.+.++.+        +..+..+++|++|++++|.++.. +..+..
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            566666776666644211       1    355555555432        34556667777777777766522 122222


Q ss_pred             h----hccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCccc-Ccccc-----CcccCceeecccccccc--
Q psy3567          75 L----KAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIESL-PKDIG-----TLEKLENVSGNCNLIKE--  137 (277)
Q Consensus        75 ~----~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~-----~l~~L~~L~l~~n~~~~--  137 (277)
                      .    .++|++|++++|+++.     ++..+..+++|++|++++|.+... +..+.     ..++|++|++++|.+..  
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence            1    1346666666666553     233344455666666666655421 11111     13345555555554442  


Q ss_pred             ---cchhhhcCCCCCE-----------------------------EEccCCCCcc-----CccccCCCCCCCEEEccCCC
Q psy3567         138 ---LPLSFSKLHNLKH-----------------------------LSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNR  180 (277)
Q Consensus       138 ---l~~~~~~l~~L~~-----------------------------L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~  180 (277)
                         ++..+..+++|++                             |++++|.++.     ++..+..+++|++|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence               2333444444444                             4444444442     33333344555555555555


Q ss_pred             Ccc-----cCchhcc--ceeeEEEccCCccCc-----CCcCccCCCCCCEEEcCCCccccCccCccccC-----CCCccE
Q psy3567         181 IES-----IPDGIGK--MKVIEMNLNKNQICH-----ISPDISECVRLKILRLEENCLAINAIPTCILT-----SSNVCT  243 (277)
Q Consensus       181 l~~-----l~~~~~~--~~l~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~~L~~  243 (277)
                      ++.     +...+..  .++++|++++|.++.     ++..+..+++|++|++++|.++. ..+..+..     .++|++
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~  374 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRV  374 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCE
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEE
Confidence            441     1111110  135555555555552     33444555666666666666652 21222221     456666


Q ss_pred             EEcCCCeeee
Q psy3567         244 LNVEGNLFEM  253 (277)
Q Consensus       244 l~l~~n~~~~  253 (277)
                      |++++|.++.
T Consensus       375 L~L~~n~i~~  384 (461)
T 1z7x_W          375 LWLADCDVSD  384 (461)
T ss_dssp             EECTTSCCCH
T ss_pred             EECCCCCCCh
Confidence            6666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=2.6e-18  Score=148.05  Aligned_cols=193  Identities=16%  Similarity=0.158  Sum_probs=137.8

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCC-cCCc-cccccCCCcE-EeccCCcCccc-CccccCcccCcee
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKIS-KFPL-DLASYQLLKS-LTFDQNKIESL-PKDIGTLEKLENV  128 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~-~~~~l~~L~~-L~l~~~~i~~~-~~~~~~l~~L~~L  128 (277)
                      +++++|++++|+|+.+|+..+..+++|++|++++|++. .+|. .|.+++++++ +.+..|++..+ +..+..+++|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            46788888888888888765554588888888888874 4554 4778877665 45566788877 4567888888888


Q ss_pred             ecccccccccch-hhhcCCCCCEEEccC-CCCccCccc-cCCC-CCCCEEEccCCCCcccCchhccc-eeeEEEcc-CCc
Q psy3567         129 SGNCNLIKELPL-SFSKLHNLKHLSLSQ-NQLNKFPTV-LFNL-QHLDVLDLSFNRIESIPDGIGKM-KVIEMNLN-KNQ  202 (277)
Q Consensus       129 ~l~~n~~~~l~~-~~~~l~~L~~L~l~~-n~l~~~~~~-l~~~-~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~-~n~  202 (277)
                      ++++|.+..++. .+....++..+++.+ +.+..++.. +..+ ..++.|++++|.++.++...+.. +++++++. +|.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            888888887764 355566777787755 456666543 3333 46888889999888887766554 58888886 477


Q ss_pred             cCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         203 ICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       203 l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      ++.+|.. +..+++|++|++++|.++  .+|..  .+.+|++|.+.++
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIH--SLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCC--CCCSS--SCTTCCEEECTTC
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcC--ccChh--hhccchHhhhccC
Confidence            8888865 678888999999999887  56653  2345555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.9e-18  Score=136.83  Aligned_cols=148  Identities=18%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCC
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN  156 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n  156 (277)
                      ++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+..                   
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-------------------  102 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-------------------  102 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-------------------
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-------------------
Confidence            55666666666555555 4555555555555555443332 34444444455444444442                   


Q ss_pred             CCccCccccCCCCCCCEEEccCCCCcc-cCchhccce-eeEEEccCCc-cCcCCcCccCCCCCCEEEcCCCccccCccCc
Q psy3567         157 QLNKFPTVLFNLQHLDVLDLSFNRIES-IPDGIGKMK-VIEMNLNKNQ-ICHISPDISECVRLKILRLEENCLAINAIPT  233 (277)
Q Consensus       157 ~l~~~~~~l~~~~~L~~L~l~~n~l~~-l~~~~~~~~-l~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~  233 (277)
                         ..+..+..+++|++|++++|.++. .+..+..++ +++|++++|+ ++.++ .+..+++|++|++++|.++  .++ 
T Consensus       103 ---~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~--~~~-  175 (197)
T 4ezg_A          103 ---DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH--DYR-  175 (197)
T ss_dssp             ---GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--CCT-
T ss_pred             ---ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--ChH-
Confidence               123344444555555555555442 333333332 5555555554 44544 3556666677777666665  333 


Q ss_pred             cccCCCCccEEEcCCCeee
Q psy3567         234 CILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       234 ~~~~~~~L~~l~l~~n~~~  252 (277)
                      .+..+++|++|++++|+++
T Consensus       176 ~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TGGGCSSCCEEEECBC---
T ss_pred             HhccCCCCCEEEeeCcccC
Confidence            5566666777777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=4.3e-18  Score=134.82  Aligned_cols=152  Identities=14%  Similarity=0.209  Sum_probs=116.7

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcc-cCccccCcccCce
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLEN  127 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~  127 (277)
                      ...+++++.|++++|.++.+| .+..+ ++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..++.+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l-~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYA-HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGC-TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcC-CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            367889999999999999988 56666 89999999999877654 68899999999999999986 5778888888888


Q ss_pred             eecccccccc-cchhhhcCCCCCEEEccCCC-CccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCc
Q psy3567         128 VSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQ-LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICH  205 (277)
Q Consensus       128 L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~  205 (277)
                      |++++|.+.. .+..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.++                    
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--------------------  175 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--------------------  175 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--------------------
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--------------------
Confidence            8888888874 45667778888888888886 66665 4566666666666666555443                    


Q ss_pred             CCcCccCCCCCCEEEcCCCccc
Q psy3567         206 ISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       206 l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                         .+..+++|+.|++++|++.
T Consensus       176 ---~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 ---GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ---TGGGCSSCCEEEECBC---
T ss_pred             ---HhccCCCCCEEEeeCcccC
Confidence               3455677777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.5e-18  Score=150.10  Aligned_cols=169  Identities=22%  Similarity=0.314  Sum_probs=127.6

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-cc-ccCCCcEEeccCCcCcccC-ccccCcccCceeeccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LA-SYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNC  132 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~-~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~  132 (277)
                      +++++++++++.+|..+.   +.++.|++++|+++.++.. +. .+++|++|++++|++..++ ..+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            578889998888887543   5688899999988877654 55 8888999999999888775 4688888888888888


Q ss_pred             ccccccch-hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhc----cc-eeeEEEccCCccCc
Q psy3567         133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIG----KM-KVIEMNLNKNQICH  205 (277)
Q Consensus       133 n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~----~~-~l~~L~l~~n~l~~  205 (277)
                      |.+..++. .|..+++|++|++++|.+..+ +..+..+++|++|++++|.++.+|....    .+ +++.|++++|+++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            88887764 478888888888888888866 4566778888888888888887776642    23 36777777777776


Q ss_pred             CCcC-ccCCCC--CCEEEcCCCccc
Q psy3567         206 ISPD-ISECVR--LKILRLEENCLA  227 (277)
Q Consensus       206 l~~~-l~~~~~--L~~L~l~~n~~~  227 (277)
                      +|.. +..++.  ++.|++++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            6643 555554  366777777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=7.4e-21  Score=173.61  Aligned_cols=175  Identities=22%  Similarity=0.277  Sum_probs=87.2

Q ss_pred             hccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCC-------------CC-cCCccccccCCCcEEe-ccCCcCcc
Q psy3567          50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNK-------------IS-KFPLDLASYQLLKSLT-FDQNKIES  114 (277)
Q Consensus        50 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-------------i~-~~~~~~~~l~~L~~L~-l~~~~i~~  114 (277)
                      ..++.|+.|++++|+++.+|+.+..+ ++|+.|++++|.             .. ..|..+..+++|+.|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45677778888888888888877777 778888875543             11 2233344555555555 33333221


Q ss_pred             cCc------cccC--cccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCc
Q psy3567         115 LPK------DIGT--LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD  186 (277)
Q Consensus       115 ~~~------~~~~--l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~  186 (277)
                      ++.      .+..  ...|+.|++++|.+..+|. +..+++|+.|++++|.+..+|..++.+++|++|++++|.++.+| 
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-  502 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence            110      0000  1124444444444444443 44444455555554444444444444444555555444444444 


Q ss_pred             hhccce-eeEEEccCCccCcC--CcCccCCCCCCEEEcCCCccc
Q psy3567         187 GIGKMK-VIEMNLNKNQICHI--SPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       187 ~~~~~~-l~~L~l~~n~l~~l--~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      .++.++ |++|++++|+++.+  |..++.+++|+.|++++|+++
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            333332 44444444444444  344444444444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=9.5e-18  Score=144.51  Aligned_cols=199  Identities=17%  Similarity=0.146  Sum_probs=147.5

Q ss_pred             HhhhccCccCEEEeecCCCC-cCChhHHHhhccccE-EEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRT-LDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTL  122 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~-L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l  122 (277)
                      .+|.++++|++|++++|++. .+|+..+...+++.. +.+..|++..+++ .|..+++|++|++++|++..++. .+...
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~  127 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  127 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence            35788899999999999875 567655544456554 6667788887754 58889999999999999987754 45566


Q ss_pred             ccCceeecc-cccccccch-hhhcCC-CCCEEEccCCCCccCccccCCCCCCCEEEcc-CCCCcccCchh-ccc-eeeEE
Q psy3567         123 EKLENVSGN-CNLIKELPL-SFSKLH-NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS-FNRIESIPDGI-GKM-KVIEM  196 (277)
Q Consensus       123 ~~L~~L~l~-~n~~~~l~~-~~~~l~-~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~-~n~l~~l~~~~-~~~-~l~~L  196 (277)
                      .++..+++. ++.+..++. .|..+. .++.|++++|.+..++...+...+++++++. +|.++.+|... ..+ .+++|
T Consensus       128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  207 (350)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred             chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence            677788864 466777764 455554 6888999999999888877777889999986 46888888654 444 48999


Q ss_pred             EccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       197 ~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      ++++|+|+.+|...  ..+|+.|.+.++.-. ..+| .+..+++|+.+++.++
T Consensus       208 dLs~N~l~~lp~~~--~~~L~~L~~l~~~~l-~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          208 DISRTRIHSLPSYG--LENLKKLRARSTYNL-KKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             ECTTSCCCCCCSSS--CTTCCEEECTTCTTC-CCCC-CTTTCCSCCEEECSCH
T ss_pred             hcCCCCcCccChhh--hccchHhhhccCCCc-CcCC-CchhCcChhhCcCCCC
Confidence            99999999998752  356666666555432 4666 4778889999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.8e-17  Score=134.32  Aligned_cols=148  Identities=25%  Similarity=0.368  Sum_probs=108.5

Q ss_pred             cccEEEccCCCCCcCCccccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccch-hhhcCCCCCEEEccC
Q psy3567          78 VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQ  155 (277)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~  155 (277)
                      .-+.++.+++.+..+|..+.  ++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .|..+++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45667888888887777553  7788888888888766 4567777888888888888877764 367777888888888


Q ss_pred             CCCccCccc-cCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         156 NQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       156 n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      |.+..++.. +..+++|++|++++|.++.+|..+..++ +++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            877777544 4567778888888777777776665553 77777777777777653 666777777777777776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.9e-17  Score=133.43  Aligned_cols=147  Identities=23%  Similarity=0.399  Sum_probs=102.5

Q ss_pred             ccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeeccccccccc-chhhhcCCCCCEEEccCC
Q psy3567          79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQN  156 (277)
Q Consensus        79 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n  156 (277)
                      -+.++++++.++.+|..+.  +.+++|++++|++..++. .+..+++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3567888888888877654  578888888888887754 677778888888888887765 456777788888888888


Q ss_pred             CCccCccc-cCCCCCCCEEEccCCCCcccC-chhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         157 QLNKFPTV-LFNLQHLDVLDLSFNRIESIP-DGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       157 ~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~-~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      .+..+|.. +..+++|++|++++|.++.++ ..+..+ ++++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            77777654 346777777777777777553 334443 366666666666666553 555666666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=2.5e-17  Score=132.72  Aligned_cols=147  Identities=24%  Similarity=0.315  Sum_probs=91.8

Q ss_pred             ccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccC--ccccCcccCceeecccccccccch-hhhcCCCCCEEEccC
Q psy3567          79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP--KDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQ  155 (277)
Q Consensus        79 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~  155 (277)
                      -+.++++++.++.+|..+.  ..+++|++++|.+..++  ..+..+++|++|++++|.+..++. .|..+++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            3577788887777776543  34577777777777663  236677777777777777766654 566677777777777


Q ss_pred             CCCccCcc-ccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccc
Q psy3567         156 NQLNKFPT-VLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHI-SPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       156 n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      |.+..++. .+..+++|++|++++|.++.+ |..+..+ ++++|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            77766544 355666677777766666654 3333333 255566666655555 334555555566666555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=3e-17  Score=133.02  Aligned_cols=147  Identities=26%  Similarity=0.381  Sum_probs=108.0

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCN  133 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n  133 (277)
                      +.++++++++..+|..+.   ++|++|++++|+++.+ |..+..+++|++|++++|++..++. .+..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            567777777777776442   6788888888887765 4457777888888888888877754 4577788888888888


Q ss_pred             cccccchh-hhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCc
Q psy3567         134 LIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICH  205 (277)
Q Consensus       134 ~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~  205 (277)
                      .+..++.. |..+++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+ ++++|++++|.++.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            87777643 6777888888888888887777777778888888888887776643 3444 47778888887763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=9.4e-18  Score=145.16  Aligned_cols=173  Identities=24%  Similarity=0.329  Sum_probs=146.4

Q ss_pred             cccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-ccc-CcccCceeecccccccccch-hhhcCCCCCEEEcc
Q psy3567          78 VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIG-TLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLS  154 (277)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~-~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~  154 (277)
                      .-+.++++++.+..+|..+.  ..+++|++++|.++.++. .+. .+++|++|++++|.+..++. .|..+++|++|+++
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            35789999999999998654  468999999999998865 465 89999999999999998874 69999999999999


Q ss_pred             CCCCccCcc-ccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCcCc----cCCCCCCEEEcCCCccc
Q psy3567         155 QNQLNKFPT-VLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISPDI----SECVRLKILRLEENCLA  227 (277)
Q Consensus       155 ~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~~l----~~~~~L~~L~l~~n~~~  227 (277)
                      +|.+..++. .+..+++|++|++++|.++.+ +..+..+ .|++|++++|+++.+|..+    ..+++|+.|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999998865 567899999999999999976 4556665 4999999999999999874    56899999999999998


Q ss_pred             cCccC-ccccCCCC--ccEEEcCCCeeeec
Q psy3567         228 INAIP-TCILTSSN--VCTLNVEGNLFEMK  254 (277)
Q Consensus       228 ~~~~~-~~~~~~~~--L~~l~l~~n~~~~~  254 (277)
                        .+| ..+..++.  ++.|++++|++...
T Consensus       177 --~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          177 --KLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             --CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             --ccCHHHhhhccHhhcceEEecCCCccCC
Confidence              555 46677776  48899999999864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=4.4e-17  Score=131.28  Aligned_cols=146  Identities=26%  Similarity=0.487  Sum_probs=116.9

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeecccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCN  133 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n  133 (277)
                      +.++++++.++.+|..+.   ++++.|++++|+++.+++ .|..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578888888888886543   678888888888887765 588888888888888888876 667888888888888888


Q ss_pred             cccccchh-hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccC
Q psy3567         134 LIKELPLS-FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       134 ~~~~l~~~-~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~  204 (277)
                      .+..+|.. |..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. +..+ .+++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88888754 67888888888888888876 45667788888888888888877654 4444 4888888888876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=8.4e-19  Score=164.55  Aligned_cols=220  Identities=15%  Similarity=0.163  Sum_probs=115.5

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL   94 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~   94 (277)
                      +..+.|++.++.+.......+..+.+..          ..+..+++..+++...+..+..+ +.|+.|++++|.+..+|.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~----------~~i~~~~~~~n~~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~  241 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQ----------YSIDEDDDIENRMVMPKDSKYDD-QLWHALDLSNLQIFNISA  241 (727)
T ss_dssp             -----------------------------------------------------------CC-CCCCEEECTTSCCSCCCG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCc----------ccccCccccccceecChhhhccC-CCCcEEECCCCCCCCCCh
Confidence            4456677777766653222222222111          12334445555555444444444 889999999999998888


Q ss_pred             cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEE
Q psy3567          95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL  174 (277)
Q Consensus        95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L  174 (277)
                      .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|++|
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred             hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEE
Confidence            87799999999999999998898899999999999999999999988999999999999999999998888899999999


Q ss_pred             EccCCCCcc-cCchhccce--eeEEEccCCccC-cCCcCccCCCCCCEEEcCCC--------ccccCccCccccCCCCcc
Q psy3567         175 DLSFNRIES-IPDGIGKMK--VIEMNLNKNQIC-HISPDISECVRLKILRLEEN--------CLAINAIPTCILTSSNVC  242 (277)
Q Consensus       175 ~l~~n~l~~-l~~~~~~~~--l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n--------~~~~~~~~~~~~~~~~L~  242 (277)
                      ++++|.++. +|..+....  ...+++.+|.++ .+|.      .|..|+++.|        .+. +..+..+..+....
T Consensus       322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~-~~~~~~~~~l~~~~  394 (727)
T 4b8c_D          322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQ-QSTEHLATDLAKRT  394 (727)
T ss_dssp             ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------
T ss_pred             eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcc-ccccchhhcccccc
Confidence            999999984 455554433  334678888887 3433      4556666666        222 12222334455556


Q ss_pred             EEEcCCCeee
Q psy3567         243 TLNVEGNLFE  252 (277)
Q Consensus       243 ~l~l~~n~~~  252 (277)
                      ...++.|.+.
T Consensus       395 ~~~ls~Nil~  404 (727)
T 4b8c_D          395 FTVLSYNTLC  404 (727)
T ss_dssp             -------CCC
T ss_pred             eeeeeccccc
Confidence            6667777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=7e-17  Score=128.81  Aligned_cols=173  Identities=24%  Similarity=0.326  Sum_probs=128.8

Q ss_pred             ccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccchh-hhcCCCCCEEEccCC
Q psy3567          79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQN  156 (277)
Q Consensus        79 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~l~~n  156 (277)
                      -+.++.+++.+..+|..+  .+++++|++++|.+..++. .+..+++|++|++++|.+..++.. |..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            356778888888777654  3578899999998887755 467888888888888888877654 678888888888888


Q ss_pred             CCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccC
Q psy3567         157 QLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIP  232 (277)
Q Consensus       157 ~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~  232 (277)
                      .+..++.. +..+++|++|++++|.++.++.. +..+ ++++|++++|+++.++.. +..+++|++|++++|++. +   
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-~---  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-C---  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-C---
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-c---
Confidence            88877654 56788888888888888877654 3444 478888888888877765 677788888888888765 2   


Q ss_pred             ccccCCCCccEEEcCCCeeeecccccccc
Q psy3567         233 TCILTSSNVCTLNVEGNLFEMKAFQQLDG  261 (277)
Q Consensus       233 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~~  261 (277)
                          .++++++++++.|.+++...+.+..
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCcc
Confidence                2346777777777777655554433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=6.2e-17  Score=130.40  Aligned_cols=146  Identities=18%  Similarity=0.334  Sum_probs=113.3

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc--cccccCCCcEEeccCCcCcccCc-cccCcccCceeeccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL--DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNC  132 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~  132 (277)
                      ++++++++.++.+|..+.   +.+++|++++|+++.+++  .|..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            578888888888886543   557888888888886633  37888888888888888887754 788888888888888


Q ss_pred             ccccccch-hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccCCccC
Q psy3567         133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNKNQIC  204 (277)
Q Consensus       133 n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~n~l~  204 (277)
                      |.+..++. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+ |..+..++ +++|++++|.++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            88887764 477888888888888888876 45667788888888888888866 55565554 888888888876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.5e-19  Score=164.96  Aligned_cols=175  Identities=20%  Similarity=0.277  Sum_probs=148.3

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCCc-------------Cc-ccCccccCcccCceee-cccccccccch-
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNK-------------IE-SLPKDIGTLEKLENVS-GNCNLIKELPL-  140 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~-------------i~-~~~~~~~~l~~L~~L~-l~~n~~~~l~~-  140 (277)
                      ++|+.|++++|+++.+|+.+.++++|+.|+++++.             .. ..|..++.+++|+.|+ ++.|.+..++. 
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            78889999999999999999999999999997764             22 3355677888888888 67766554432 


Q ss_pred             -----hhhcC--CCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcCccC
Q psy3567         141 -----SFSKL--HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDISE  212 (277)
Q Consensus       141 -----~~~~l--~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~  212 (277)
                           .+..+  ..|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.++ |+.|++++|+++.+| .++.
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~  506 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVAN  506 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTT
T ss_pred             hhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCC
Confidence                 12221  369999999999999987 8899999999999999999999888875 999999999999998 8999


Q ss_pred             CCCCCEEEcCCCccccCcc-CccccCCCCccEEEcCCCeeeec
Q psy3567         213 CVRLKILRLEENCLAINAI-PTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       213 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      +++|+.|++++|.++ +.. |..+..+++|+.|++++|.+++.
T Consensus       507 l~~L~~L~Ls~N~l~-~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          507 LPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCcEEECCCCCCC-CCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            999999999999998 343 89999999999999999998865

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=4.2e-18  Score=159.81  Aligned_cols=189  Identities=21%  Similarity=0.201  Sum_probs=103.8

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEE-----EccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTL-----DISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN  127 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L-----~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~  127 (277)
                      +.++.|++.++.+...+..+... ..|..+     ++..|.+...+..+..+..|+.|++++|.+..++..+..+++|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~-l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQH-KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhc-CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            55778888888887766544332 222222     222333334455677888888888888888888877778888888


Q ss_pred             eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcC
Q psy3567         128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHI  206 (277)
Q Consensus       128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l  206 (277)
                      |++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++.++ |++|++++|.++..
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            88888888888877888888888888888888888888888888888888888888887776664 88888888888743


Q ss_pred             -CcCccCCC-CCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         207 -SPDISECV-RLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       207 -~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                       |..+.... ....+++++|.++ +.+|.      .++.|+++.|
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l~-~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRPE-IPLPH------ERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCC-CCCCC------C---------
T ss_pred             ChHHHhhcchhhhHHhhccCccc-CcCcc------ccceeEeecc
Confidence             33343322 2234677788777 56665      3445555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=8.6e-17  Score=123.91  Aligned_cols=132  Identities=21%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             CccCEEEeecCCCC--cCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcc-cCccccCcccCceee
Q psy3567          53 KKTGVINLSHQGFK--EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLENVS  129 (277)
Q Consensus        53 ~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~  129 (277)
                      +++++|++++|.++  .+|..+..+ ++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGG-GGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhC-CCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45566666666665  555543333 5666666666665555 445556666666666666554 344444455555555


Q ss_pred             cccccccccc--hhhhcCCCCCEEEccCCCCccCcc----ccCCCCCCCEEEccCCCCcccCc
Q psy3567         130 GNCNLIKELP--LSFSKLHNLKHLSLSQNQLNKFPT----VLFNLQHLDVLDLSFNRIESIPD  186 (277)
Q Consensus       130 l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~l~~l~~  186 (277)
                      +++|.+..++  ..+..+++|++|++++|.+..++.    .+..+++|++|++++|.+..+|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            5555555543  345555555555555555555544    44455555555555555554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=1.8e-16  Score=122.07  Aligned_cols=109  Identities=29%  Similarity=0.307  Sum_probs=81.6

Q ss_pred             ccccEEEccCCCCC--cCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc-cchhhhcCCCCCEEEc
Q psy3567          77 AVLRTLDISQNKIS--KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSL  153 (277)
Q Consensus        77 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l  153 (277)
                      ++++.|++++|++.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            67888888888887  7777778888888888888888776 667777788888888887776 5666666777888888


Q ss_pred             cCCCCccCc--cccCCCCCCCEEEccCCCCcccCc
Q psy3567         154 SQNQLNKFP--TVLFNLQHLDVLDLSFNRIESIPD  186 (277)
Q Consensus       154 ~~n~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~~  186 (277)
                      ++|.+..++  ..+..+++|++|++++|.++.+|.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            777777665  456667777777777766665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=3.3e-17  Score=150.37  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=72.3

Q ss_pred             CCCceeEecCCCCcCCCC--------CCceeeeccCCcc------hhHhhhccCccCEEEeecCCCCcCCh----hHHHh
Q psy3567          14 SPSKLTLLLPGKKNRGLI--------EGTIFVLKMGNSA------TKRHFETAKKTGVINLSHQGFKEFPD----EMNEL   75 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~--------~~~~~~l~~~~~~------~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~   75 (277)
                      .+++++|++++|.+++..        +..+..+.+..+.      +......+++|++|++++|.++....    .+...
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            467888888888765442        2336666655433      12333477888888888887653321    12223


Q ss_pred             hccccEEEccCCCCCcC-----CccccccCCCcEEeccCCcCcccCccccCcccCceeecc
Q psy3567          76 KAVLRTLDISQNKISKF-----PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGN  131 (277)
Q Consensus        76 ~~~L~~L~l~~~~i~~~-----~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~  131 (277)
                      +++|+.|++++|.++.+     +..+.++++|++|++++|.+..++..+..+++|++++++
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            37788888877777522     233456777888888877776666555566666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=3.7e-16  Score=121.35  Aligned_cols=132  Identities=18%  Similarity=0.292  Sum_probs=103.3

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccc-cCcccCce
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLEN  127 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-~~l~~L~~  127 (277)
                      +.++.++++|++++|.++.+|. +....++|++|++++|+++.+ +.+..+++|++|++++|.+..++..+ ..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4567788888888888887754 455545888888888888876 56788888888888888888776544 77888888


Q ss_pred             eecccccccccch--hhhcCCCCCEEEccCCCCccCccc----cCCCCCCCEEEccCCCCc
Q psy3567         128 VSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLNKFPTV----LFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       128 L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~----l~~~~~L~~L~l~~n~l~  182 (277)
                      |++++|.+..+|.  .+..+++|+.|++++|.+..+|..    +..+++|+.|+++.|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888888887776  677888888888888888877664    667788888888877665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3e-15  Score=117.93  Aligned_cols=123  Identities=24%  Similarity=0.355  Sum_probs=82.1

Q ss_pred             cEEeccCCcCcccCccccCcccCceeecccccccccchh--hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCC
Q psy3567         103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLS--FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFN  179 (277)
Q Consensus       103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~--~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n  179 (277)
                      ++++++++.+..+|..+..  ++++|++++|.+..++..  +..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6778888888777765543  777788887777766542  67777777777777777765 456667777777777777


Q ss_pred             CCcccCch-hccc-eeeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccc
Q psy3567         180 RIESIPDG-IGKM-KVIEMNLNKNQICHI-SPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       180 ~l~~l~~~-~~~~-~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      .++.++.. +..+ ++++|++++|+++.+ |..+..+++|++|++++|++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            77755443 3333 366666666666644 334556666666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.4e-15  Score=114.61  Aligned_cols=123  Identities=20%  Similarity=0.179  Sum_probs=78.9

Q ss_pred             ccCceeeccccccc--ccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcc-cCchhccc-eeeEEEc
Q psy3567         123 EKLENVSGNCNLIK--ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIES-IPDGIGKM-KVIEMNL  198 (277)
Q Consensus       123 ~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~-l~~~~~~~-~l~~L~l  198 (277)
                      ++++++++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+ ++++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            44555555555554  4555555566666666666666655 455566666666666666665 44444433 3667777


Q ss_pred             cCCccCcCC--cCccCCCCCCEEEcCCCccccCccCc----cccCCCCccEEEcCC
Q psy3567         199 NKNQICHIS--PDISECVRLKILRLEENCLAINAIPT----CILTSSNVCTLNVEG  248 (277)
Q Consensus       199 ~~n~l~~l~--~~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~l~l~~  248 (277)
                      ++|+++.++  ..+..+++|++|++++|.++  .+|.    .+..+++|++|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCccc--chHHHHHHHHHHCCCcccccCCC
Confidence            777777654  55777888888888888887  3443    577788888887763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=117.41  Aligned_cols=124  Identities=23%  Similarity=0.416  Sum_probs=108.8

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccC-ccccCcccCceeeccccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNL  134 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~  134 (277)
                      ++++++++.++.+|..+.   ++++.|++++|+++.+|..+.++++|++|++++|.++.++ ..|..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            678999999999997543   6899999999999999988999999999999999999875 468899999999999999


Q ss_pred             ccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCc
Q psy3567         135 IKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       135 ~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~  182 (277)
                      +..++. .|..+++|++|++++|.+..++.. +..+++|++|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            998764 588999999999999999988764 667899999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.5e-15  Score=113.26  Aligned_cols=108  Identities=22%  Similarity=0.284  Sum_probs=62.1

Q ss_pred             ccccEEEccCCCCC--cCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc-cchhhhcCCCCCEEEc
Q psy3567          77 AVLRTLDISQNKIS--KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSL  153 (277)
Q Consensus        77 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l  153 (277)
                      ++++.|++++|.+.  .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45666666666665  5555556666666666666666555 455555666666666666554 4444555566666666


Q ss_pred             cCCCCccCc--cccCCCCCCCEEEccCCCCcccC
Q psy3567         154 SQNQLNKFP--TVLFNLQHLDVLDLSFNRIESIP  185 (277)
Q Consensus       154 ~~n~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~  185 (277)
                      ++|.++.++  ..+..+++|++|++++|.++.++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            666655543  44455555555555555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=3.7e-15  Score=117.41  Aligned_cols=124  Identities=24%  Similarity=0.403  Sum_probs=107.5

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc--ccccCCCcEEeccCCcCccc-CccccCcccCceeeccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD--LASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNC  132 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~  132 (277)
                      +++++++++++.+|..+.   .+++.|++++|+++.+++.  +..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            789999999999997553   5799999999999987763  88999999999999999977 66889999999999999


Q ss_pred             ccccccch-hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCc
Q psy3567         133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       133 n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~  182 (277)
                      |.+..++. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            99987764 488899999999999999865 667778899999999999887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=2.4e-16  Score=144.59  Aligned_cols=232  Identities=12%  Similarity=0.039  Sum_probs=130.0

Q ss_pred             CCCceeEecCCCCc---CCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCc-CChhHHHhhcc-ccEEEccCCC
Q psy3567          14 SPSKLTLLLPGKKN---RGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKE-FPDEMNELKAV-LRTLDISQNK   88 (277)
Q Consensus        14 ~~~l~~l~l~~~~~---~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~-L~~L~l~~~~   88 (277)
                      .+++++|++++|..   .+.+|..+...  ....+......++.|++|+++++.++. .+..+...++. |++|++++|.
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGY--VTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCB--CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred             CCCCeEEEecCCcchhhccccccccccc--chHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence            45688999988753   23444332211  011122344478888888888887762 23334443344 8888888875


Q ss_pred             -CC--cCCccccccCCCcEEeccCCcCccc-----CccccCcccCceeeccccccc-----ccchhhhcCCCCCEEEccC
Q psy3567          89 -IS--KFPLDLASYQLLKSLTFDQNKIESL-----PKDIGTLEKLENVSGNCNLIK-----ELPLSFSKLHNLKHLSLSQ  155 (277)
Q Consensus        89 -i~--~~~~~~~~l~~L~~L~l~~~~i~~~-----~~~~~~l~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L~l~~  155 (277)
                       +.  .++....++++|++|++++|.+...     +.....+++|++|++++|.+.     .++..+..+++|++|++++
T Consensus       150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred             CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence             22  1222234678888888888876532     223445777888888877775     2334456777888888888


Q ss_pred             CCCccCccccCCCCCCCEEEccCCCCc----ccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCc
Q psy3567         156 NQLNKFPTVLFNLQHLDVLDLSFNRIE----SIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA  230 (277)
Q Consensus       156 n~l~~~~~~l~~~~~L~~L~l~~n~l~----~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~  230 (277)
                      |.+..++..+..+++|++|+++.....    ..+..+... +++.++++++....+|..+..+++|++|++++|.++...
T Consensus       230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            777766666666677777777532111    111122222 245555555444445554555555555555555544222


Q ss_pred             cCccccCCCCccEEEcC
Q psy3567         231 IPTCILTSSNVCTLNVE  247 (277)
Q Consensus       231 ~~~~~~~~~~L~~l~l~  247 (277)
                      ++..+..+++|++|+++
T Consensus       310 ~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             HHHHHTTCTTCCEEEEE
T ss_pred             HHHHHHhCcCCCEEecc
Confidence            22233444555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.8e-15  Score=117.41  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=77.9

Q ss_pred             CcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEc
Q psy3567         121 TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNL  198 (277)
Q Consensus       121 ~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l  198 (277)
                      .+.+|++|++++|.+..++......++|++|++++|.+..+ ..+..+++|++|++++|.++.+|..+ ..+ .+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            34444444444444444432222222566666666665555 44555666666666666666555433 333 3666666


Q ss_pred             cCCccCcCCc--CccCCCCCCEEEcCCCccccCccCcc----ccCCCCccEEEcCCCeeee
Q psy3567         199 NKNQICHISP--DISECVRLKILRLEENCLAINAIPTC----ILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       199 ~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++|+++.+|.  .+..+++|+.|++++|+++  .+|..    +..+++|+.|++++|....
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            6777666665  5677788888888888876  55653    6777888888888776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=113.73  Aligned_cols=123  Identities=22%  Similarity=0.346  Sum_probs=83.2

Q ss_pred             cEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCC
Q psy3567         103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRI  181 (277)
Q Consensus       103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l  181 (277)
                      +.++++++.+..+|..+.  +++++|++++|.+..+|..|..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            567788888877776543  46777888888777777777777778888888777776653 456677777777777777


Q ss_pred             cccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         182 ESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       182 ~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      +.++.. +..+ ++++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            765442 3333 366666666666666553 555666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=2.7e-14  Score=121.78  Aligned_cols=98  Identities=13%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             CCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchh-ccce-ee-EEEccCCccCcCCc-CccCCCCCCEE
Q psy3567         145 LHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGI-GKMK-VI-EMNLNKNQICHISP-DISECVRLKIL  219 (277)
Q Consensus       145 l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~-~~~~-l~-~L~l~~n~l~~l~~-~l~~~~~L~~L  219 (277)
                      +++|+.+++.+|++..++. .+..+.+|+.+++.+| ++.++... ..+. |+ .+++.+ .++.++. +|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            3445555555555554443 2334445555555444 44443332 2222 44 455544 4444442 24455555555


Q ss_pred             EcCCCccccCccCccccCCCCccEEE
Q psy3567         220 RLEENCLAINAIPTCILTSSNVCTLN  245 (277)
Q Consensus       220 ~l~~n~~~~~~~~~~~~~~~~L~~l~  245 (277)
                      ++++|.++ ..-+.+|.++++|+.++
T Consensus       303 ~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EeCCCccC-ccchhhhcCCcchhhhc
Confidence            55555444 11123444455555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=8.4e-14  Score=107.99  Aligned_cols=126  Identities=29%  Similarity=0.417  Sum_probs=104.5

Q ss_pred             cCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeeccc
Q psy3567          55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNC  132 (277)
Q Consensus        55 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~  132 (277)
                      .+.+++++++++.+|..+.   ++++.|++++|+++.+++. +..+++|++|++++|.+..++. .++.+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4778999999998886443   6899999999999877764 6889999999999999988765 468889999999999


Q ss_pred             ccccccchh-hhcCCCCCEEEccCCCCccCcccc-CCCCCCCEEEccCCCCcc
Q psy3567         133 NLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVL-FNLQHLDVLDLSFNRIES  183 (277)
Q Consensus       133 n~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~l-~~~~~L~~L~l~~n~l~~  183 (277)
                      |.+..++.. +..+++|++|++++|.+..+|... ..+++|++|++++|.++.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            998887654 678889999999999988887654 568889999999988774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=1.3e-16  Score=126.26  Aligned_cols=133  Identities=25%  Similarity=0.346  Sum_probs=81.5

Q ss_pred             cccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEE
Q psy3567         118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEM  196 (277)
Q Consensus       118 ~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L  196 (277)
                      .+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+ .+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            4445555555555555555554 455555555555555555555544444456666666666666554 23333 36677


Q ss_pred             EccCCccCcCCc--CccCCCCCCEEEcCCCccccCccCc----------cccCCCCccEEEcCCCeeeecc
Q psy3567         197 NLNKNQICHISP--DISECVRLKILRLEENCLAINAIPT----------CILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       197 ~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      ++++|+++.++.  .+..+++|++|++++|++. +..|.          .+..+++|+.|+  ++.++.++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e  188 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY-NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHH-HHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccc-cccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence            777777776654  4677888899999888886 34333          267788888875  67666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=3.2e-16  Score=124.10  Aligned_cols=134  Identities=24%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc
Q psy3567          16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD   95 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~   95 (277)
                      .+..++++++.+.|..|. +.       .++..+..+++|++|++++|.++.+| .+..+ ++|++|++++|++..+|..
T Consensus        19 ~l~~l~l~~~~l~~~~~~-l~-------~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l-~~L~~L~l~~n~l~~l~~~   88 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPP-IE-------KMDATLSTLKACKHLALSTNNIEKIS-SLSGM-ENLRILSLGRNLIKKIENL   88 (198)
T ss_dssp             CCCCTTCSEEECCBCCTT-CC-------CCHHHHHHTTTCSEEECSEEEESCCC-CHHHH-TTCCEEEEEEEEECSCSSH
T ss_pred             cccCcchheeEeccccCc-Hh-------hhhHHHhcCCCCCEEECCCCCCcccc-ccccC-CCCCEEECCCCCcccccch
Confidence            555566666666665442 11       12335666777777777777777766 45555 6777777777777766666


Q ss_pred             ccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch--hhhcCCCCCEEEccCCCCcc
Q psy3567          96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLNK  160 (277)
Q Consensus        96 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~  160 (277)
                      +..+++|++|++++|.+..++ .+..+++|++|++++|.+..++.  .+..+++|++|++++|.+..
T Consensus        89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            666667777777777776655 46666667777777776665543  46666667777776666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=2.2e-13  Score=105.57  Aligned_cols=125  Identities=24%  Similarity=0.378  Sum_probs=63.7

Q ss_pred             cEEeccCCcCcccCccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCC
Q psy3567         103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNR  180 (277)
Q Consensus       103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~  180 (277)
                      +.++++++.+..+|..+.  +++++|++++|.+..++. .+..+++|++|++++|.+..++.. +..+++|         
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------   78 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL---------   78 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc---------
Confidence            455555555555543322  345555555555554433 234445555555555555444332 2344444         


Q ss_pred             CcccCchhccceeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCc-cccCCCCccEEEcCCCeeee
Q psy3567         181 IESIPDGIGKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPT-CILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       181 l~~l~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~  253 (277)
                                   ++|++++|+++.++.. +..+++|++|++++|.++  .+|. .+..+++|++|++++|++++
T Consensus        79 -------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           79 -------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcce--EeCHHHhcCCcccCEEEecCCCeec
Confidence                         4455555555544443 455566666666666665  3333 34556666666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=1.1e-15  Score=140.24  Aligned_cols=229  Identities=16%  Similarity=0.160  Sum_probs=131.2

Q ss_pred             CCceeEecCCCCcCCC---CCCceeeeccCCcchhHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCC-CC
Q psy3567          15 PSKLTLLLPGKKNRGL---IEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQN-KI   89 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~-~i   89 (277)
                      +++++|+++++.....   .|..+...  ....+......+++|++|+++++.++ ..+..+...+++|++|++++| .+
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGY--VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCB--CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCceEEeccCCCchhhcccccccccch--hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            5788888888753221   12211000  00111233457788888888888777 233344433478888888888 44


Q ss_pred             Cc--CCccccccCCCcEEeccCCcCccc-----CccccCcccCceeeccccc--cc--ccchhhhcCCCCCEEEccCC-C
Q psy3567          90 SK--FPLDLASYQLLKSLTFDQNKIESL-----PKDIGTLEKLENVSGNCNL--IK--ELPLSFSKLHNLKHLSLSQN-Q  157 (277)
Q Consensus        90 ~~--~~~~~~~l~~L~~L~l~~~~i~~~-----~~~~~~l~~L~~L~l~~n~--~~--~l~~~~~~l~~L~~L~l~~n-~  157 (277)
                      +.  ++..+.++++|++|++++|.++..     +.....+++|++|+++++.  +.  .++..+..+++|++|++++| .
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            43  334445788888888888876532     2223356788888888776  11  12223455688888888877 3


Q ss_pred             CccCccccCCCCCCCEEEccCCCC-------------------------------cccCchhccc-eeeEEEccCCccCc
Q psy3567         158 LNKFPTVLFNLQHLDVLDLSFNRI-------------------------------ESIPDGIGKM-KVIEMNLNKNQICH  205 (277)
Q Consensus       158 l~~~~~~l~~~~~L~~L~l~~n~l-------------------------------~~l~~~~~~~-~l~~L~l~~n~l~~  205 (277)
                      +..++..+..+++|++|+++.+..                               ..++...... ++++|++++|.++.
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence            334555555667777777554421                               1122222222 36677777766552


Q ss_pred             --CCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567         206 --ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV  246 (277)
Q Consensus       206 --l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  246 (277)
                        +...+..+++|+.|++++| ++...++.....+++|++|++
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence              2223456667777777766 442333333344667777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=1e-15  Score=140.38  Aligned_cols=226  Identities=16%  Similarity=0.145  Sum_probs=134.3

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhh-ccCccCEEEeecC-CCCc--CChhHHHhhccccEEEccCCCC
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFE-TAKKTGVINLSHQ-GFKE--FPDEMNELKAVLRTLDISQNKI   89 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~--~~~~~~~~~~~L~~L~l~~~~i   89 (277)
                      .+++++|++++|.+++..+              ..+. .+++|++|++++| .++.  ++. +...+++|++|++++|.+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~--------------~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i  168 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCL--------------ELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDV  168 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHH--------------HHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEE
T ss_pred             CCCCCeEEeeCcEEcHHHH--------------HHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCcc
Confidence            4578889999887654422              1222 4667777777777 4442  333 232236777777777765


Q ss_pred             CcC-----CccccccCCCcEEeccCCc--Cc--ccCccccCcccCceeecccc-cccccchhhhcCCCCCEEEccCC---
Q psy3567          90 SKF-----PLDLASYQLLKSLTFDQNK--IE--SLPKDIGTLEKLENVSGNCN-LIKELPLSFSKLHNLKHLSLSQN---  156 (277)
Q Consensus        90 ~~~-----~~~~~~l~~L~~L~l~~~~--i~--~~~~~~~~l~~L~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~~n---  156 (277)
                      +..     +.....+++|++|+++++.  +.  .+......+++|++|++++| .+..++..+..+++|++|+++.+   
T Consensus       169 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  248 (594)
T 2p1m_B          169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE  248 (594)
T ss_dssp             ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC
T ss_pred             CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc
Confidence            432     2222355677777777665  21  11122234566777777665 33344445555566666654333   


Q ss_pred             ----------------------------CCccCccccCCCCCCCEEEccCCCCcc--cCchhccc-eeeEEEccCCccC-
Q psy3567         157 ----------------------------QLNKFPTVLFNLQHLDVLDLSFNRIES--IPDGIGKM-KVIEMNLNKNQIC-  204 (277)
Q Consensus       157 ----------------------------~l~~~~~~l~~~~~L~~L~l~~n~l~~--l~~~~~~~-~l~~L~l~~n~l~-  204 (277)
                                                  ....++..+..+++|++|++++|.++.  ++..+... ++++|++++| ++ 
T Consensus       249 ~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~  327 (594)
T 2p1m_B          249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED  327 (594)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred             cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence                                        112333333457899999999999772  33323344 4999999988 44 


Q ss_pred             -cCCcCccCCCCCCEEEcC---------CCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         205 -HISPDISECVRLKILRLE---------ENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       205 -~l~~~l~~~~~L~~L~l~---------~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                       .++.....+++|+.|++.         .+.++...+......+++|++|.++.|.++...
T Consensus       328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~  388 (594)
T 2p1m_B          328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA  388 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence             233334468999999993         345553333333345899999999999887543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=2.7e-13  Score=115.60  Aligned_cols=204  Identities=14%  Similarity=0.114  Sum_probs=152.7

Q ss_pred             CCCceeEecCCCCcC--C----CCCCceeeeccCCcch-hHhhhc--------cCccCEEEeecCCCCcCChhHHHhhcc
Q psy3567          14 SPSKLTLLLPGKKNR--G----LIEGTIFVLKMGNSAT-KRHFET--------AKKTGVINLSHQGFKEFPDEMNELKAV   78 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~--~----~~~~~~~~l~~~~~~~-~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~   78 (277)
                      .++++.|||++|.+.  .    .++. ........+.+ ..+|..        |++|+.+++.+ .++.+++..|..+++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGG-GCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccc-cccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence            568999999999887  1    2222 11111222233 367788        99999999999 999999888888899


Q ss_pred             ccEEEccCCCCCcCCc-cccccCCCcEEeccCCcC----cccC-ccc---------------------------------
Q psy3567          79 LRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKI----ESLP-KDI---------------------------------  119 (277)
Q Consensus        79 L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i----~~~~-~~~---------------------------------  119 (277)
                      |+.+++.+|.+..+++ .|..+..+..+.......    ..+. .++                                 
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            9999999999887665 477777777776655211    0000 000                                 


Q ss_pred             -----------------cCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCcc-ccCCCCCCC-EEEccCC
Q psy3567         120 -----------------GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLD-VLDLSFN  179 (277)
Q Consensus       120 -----------------~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~-~L~l~~n  179 (277)
                                       ..+++|+.+++..|.+..++. .|..+.+|+.+++..| +..++. ++..+.+|+ .+++.+ 
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                             126789999999999999986 5999999999999997 777764 566899999 999988 


Q ss_pred             CCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEc
Q psy3567         180 RIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRL  221 (277)
Q Consensus       180 ~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l  221 (277)
                      .++.++.. +..+ .|+++++..|+++.++.. |..|++|+.+..
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            77777644 4444 599999999999999874 889999998863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=1.6e-12  Score=100.19  Aligned_cols=101  Identities=26%  Similarity=0.379  Sum_probs=57.9

Q ss_pred             CceeecccccccccchhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCC
Q psy3567         125 LENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKN  201 (277)
Q Consensus       125 L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n  201 (277)
                      .+.++++++.+..+|..+.  +++++|++++|.+..+ |..+..+++|++|++++|.++.++... ..+ ++++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4566666666666665442  5566666666666655 334555666666666666666555443 233 3555566666


Q ss_pred             ccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         202 QICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       202 ~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      +++.++.. +..+++|++|++++|++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55555543 555555556666555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.3e-12  Score=99.68  Aligned_cols=103  Identities=25%  Similarity=0.372  Sum_probs=55.7

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCccccCcccCceeeccccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNL  134 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~  134 (277)
                      +.+++++++++.+|+.+.   ++|+.|++++|++..++ ..|.++++|++|++++|++..++..                
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----------------   75 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----------------   75 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------
T ss_pred             cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh----------------
Confidence            456666666666665432   45666666666666553 3455556666666666555555432                


Q ss_pred             ccccchhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcc
Q psy3567         135 IKELPLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIES  183 (277)
Q Consensus       135 ~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~  183 (277)
                            .|..+++|++|++++|.+..+|.. +..+++|++|++++|.+..
T Consensus        76 ------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           76 ------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                  134445555555555555554433 4445555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=5.9e-12  Score=97.35  Aligned_cols=105  Identities=29%  Similarity=0.394  Sum_probs=86.5

Q ss_pred             cEEeccCCcCcccCccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCC
Q psy3567         103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNR  180 (277)
Q Consensus       103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~  180 (277)
                      +.++++++++..+|..+.  ++|++|++++|.+..+ |..|..+++|++|++++|++..+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567777777777776554  6788888888888876 45688999999999999999999875 4689999999999999


Q ss_pred             CcccCch-hccc-eeeEEEccCCccCcCCcC
Q psy3567         181 IESIPDG-IGKM-KVIEMNLNKNQICHISPD  209 (277)
Q Consensus       181 l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~  209 (277)
                      ++.+|.. +..+ ++++|++++|.+...+..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            9988876 5555 499999999999976653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=7.1e-12  Score=96.50  Aligned_cols=101  Identities=30%  Similarity=0.411  Sum_probs=49.1

Q ss_pred             cEEEccCCCCCcCCccccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccchh-hhcCCCCCEEEccCCC
Q psy3567          80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQ  157 (277)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~l~~n~  157 (277)
                      +.++++++.++.+|..+.  +.+++|++++|.+..+ +..+..+++|++|++++|.+..++.. |..+++|++|++++|.
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            334444444444443321  3444444444444443 22344444444444444444444432 4555566666666666


Q ss_pred             CccCcc-ccCCCCCCCEEEccCCCCc
Q psy3567         158 LNKFPT-VLFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       158 l~~~~~-~l~~~~~L~~L~l~~n~l~  182 (277)
                      +..++. .+..+++|++|++++|.++
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            655544 2445566666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=5.6e-11  Score=103.91  Aligned_cols=195  Identities=12%  Similarity=0.165  Sum_probs=123.9

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCccc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEK  124 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~  124 (277)
                      .+|..|++|+.+++.+++++.++...+.. .+|+.+.+.. .+..++. .|.++++|+.+++..+ +..++. +|.. .+
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG  249 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence            56777777777777777777777766665 6777777764 3555544 4777777777777763 455533 4544 56


Q ss_pred             Cceeecccccccccc-hhhhcCCCCCEEEccCCCCc-----cCc-cccCCCCCCCEEEccCCCCcccCchhc-cc-eeeE
Q psy3567         125 LENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLN-----KFP-TVLFNLQHLDVLDLSFNRIESIPDGIG-KM-KVIE  195 (277)
Q Consensus       125 L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~-----~~~-~~l~~~~~L~~L~l~~n~l~~l~~~~~-~~-~l~~  195 (277)
                      |+.+.+ .+.+..++ ..|..+++|+.+.+.++.+.     .++ ..+..+++|+.+.+.+ .++.++...+ .+ +|+.
T Consensus       250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred             ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence            777777 33445554 35777778888877776554     343 3455677788887773 4665554433 32 4777


Q ss_pred             EEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCCC-CccEEEcCCCe
Q psy3567         196 MNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSS-NVCTLNVEGNL  250 (277)
Q Consensus       196 L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~l~l~~n~  250 (277)
                      +.+..+ ++.+... |..| +|+.+++.+|.+. ...+..+..++ .++.+++..+.
T Consensus       328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence            777443 6666543 6667 7888888777665 23334555553 57777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=2.9e-13  Score=117.25  Aligned_cols=179  Identities=14%  Similarity=0.143  Sum_probs=119.1

Q ss_pred             hccccEEEccCCCCCcCC-----cccc-ccCCCcEEeccCCcCccc--CccccCcccCceeeccccccccc-----chhh
Q psy3567          76 KAVLRTLDISQNKISKFP-----LDLA-SYQLLKSLTFDQNKIESL--PKDIGTLEKLENVSGNCNLIKEL-----PLSF  142 (277)
Q Consensus        76 ~~~L~~L~l~~~~i~~~~-----~~~~-~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~n~~~~l-----~~~~  142 (277)
                      .+.++.|++++|.++...     ..+. ..+.|++|++++|.+...  ..-...+.+|++|++++|.+...     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            378999999999987422     2222 236899999999998742  22223456789999999988743     2223


Q ss_pred             -hcCCCCCEEEccCCCCcc-----CccccCCCCCCCEEEccCCCCcc-----cCchhccc-eeeEEEccCCccC-----c
Q psy3567         143 -SKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRIES-----IPDGIGKM-KVIEMNLNKNQIC-----H  205 (277)
Q Consensus       143 -~~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~~-~l~~L~l~~n~l~-----~  205 (277)
                       ...++|++|++++|.++.     ++..+..+++|++|++++|.++.     ++..+... .+++|++++|.|+     .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             346789999999998873     44555678889999999999873     23333333 4889999999988     3


Q ss_pred             CCcCccCCCCCCEEEcCCCccccCccCccccCC---C--CccEEE--cCCCeeeecc
Q psy3567         206 ISPDISECVRLKILRLEENCLAINAIPTCILTS---S--NVCTLN--VEGNLFEMKA  255 (277)
Q Consensus       206 l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~--~L~~l~--l~~n~~~~~~  255 (277)
                      ++..+..+++|++|++++|.++... ...+...   .  .++.+.  +.++.++.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g-~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~  286 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEG-RQVLRDLGGAAEGGARVVVSLTEGTAVSEYW  286 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHH-HHHHHHCC------CEEECCCC----CHHHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHH-HHHHHHHhcCCCccchhhHhhhcCCccCHHH
Confidence            4455667788999999999887322 2233322   2  266666  6677666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=1.3e-12  Score=113.22  Aligned_cols=152  Identities=13%  Similarity=0.167  Sum_probs=86.2

Q ss_pred             CccCEEEeecCCCCcCC-hhHHHh----hccccEEEccCCCCCcC--CccccccCCCcEEeccCCcCccc-----Cccc-
Q psy3567          53 KKTGVINLSHQGFKEFP-DEMNEL----KAVLRTLDISQNKISKF--PLDLASYQLLKSLTFDQNKIESL-----PKDI-  119 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~-~~~~~~----~~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~i~~~-----~~~~-  119 (277)
                      +.++.|++++|.++... ..+...    +++|+.|++++|.++..  ..-...+++|++|++++|.++..     ...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45667777777666322 112211    14677777777766521  11123345667777777766532     1222 


Q ss_pred             cCcccCceeecccccccc-----cchhhhcCCCCCEEEccCCCCcc-----CccccCCCCCCCEEEccCCCCcc-----c
Q psy3567         120 GTLEKLENVSGNCNLIKE-----LPLSFSKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRIES-----I  184 (277)
Q Consensus       120 ~~l~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l  184 (277)
                      ...+.|++|++++|.+..     ++..+...++|++|++++|.++.     ++..+...++|++|++++|.++.     +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            235567777777776653     33445666777777777777662     23445556677777777777762     2


Q ss_pred             Cchhccc-eeeEEEccCCccC
Q psy3567         185 PDGIGKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       185 ~~~~~~~-~l~~L~l~~n~l~  204 (277)
                      +..+... .+++|++++|.|+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            2222222 3777777777776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.21  E-value=3e-10  Score=99.32  Aligned_cols=189  Identities=12%  Similarity=0.197  Sum_probs=102.2

Q ss_pred             cCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccC-ccccCcccCceeecccc
Q psy3567          55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCN  133 (277)
Q Consensus        55 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n  133 (277)
                      |+.+.+.+ .++.+++..|..+.+|+.+++.+|.+..++...-...+|+.+.+..+ +..++ .+|..+.+|+.+.+..+
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence            44444433 33344333333334444444444444444332111344444444422 33332 24445555555555432


Q ss_pred             cccccch-hhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCc-----ccCch-hccc-eeeEEEccCCccC
Q psy3567         134 LIKELPL-SFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIE-----SIPDG-IGKM-KVIEMNLNKNQIC  204 (277)
Q Consensus       134 ~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~-----~l~~~-~~~~-~l~~L~l~~n~l~  204 (277)
                       +..++. .|.. .+|+.+.+ .+++..++ .++..+++|+.+++.++.+.     .++.. +..+ +|+.+.+. +.++
T Consensus       237 -l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~  312 (401)
T 4fdw_A          237 -VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR  312 (401)
T ss_dssp             -CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred             -ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE
Confidence             333332 2333 45555555 23345553 34556788888888777654     34433 3333 48888887 4577


Q ss_pred             cCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567         205 HISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       205 ~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      .++.. |..|++|+.+.+..+ ++ ..-+.+|..+ +|+.+++++|...
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence            77754 778889999998655 44 2224577778 8999999888554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=3.6e-10  Score=96.77  Aligned_cols=102  Identities=18%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             CEEEeecC-CCCcCChhHHHhhccccEEEccC-CCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeecc
Q psy3567          56 GVINLSHQ-GFKEFPDEMNELKAVLRTLDISQ-NKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGN  131 (277)
Q Consensus        56 ~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~  131 (277)
                      ..++++++ +++.+|. +..+ .+|++|++++ |.++.+++ .|.++++|++|++++|++..++. .|..+++|++|+++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 7888887 5544 6788888875 78876664 57788888888888888876644 66777888888888


Q ss_pred             cccccccchhhhcCCCCCEEEccCCCCc
Q psy3567         132 CNLIKELPLSFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus       132 ~n~~~~l~~~~~~l~~L~~L~l~~n~l~  159 (277)
                      +|.+..+|........|+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCcc
Confidence            8887777654333333777888777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=4.9e-10  Score=95.88  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             ceeecccc-cccccchhhhcCCCCCEEEccC-CCCccCc-cccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccC
Q psy3567         126 ENVSGNCN-LIKELPLSFSKLHNLKHLSLSQ-NQLNKFP-TVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNK  200 (277)
Q Consensus       126 ~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~~-n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~  200 (277)
                      ..++++++ .+..+|. +..+++|+.|++++ |.+..++ ..+..+++|++|+|++|.++.++. .+..+ .|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            34577776 7778887 87888888888885 8888776 456678888888888888886654 34545 377888888


Q ss_pred             CccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567         201 NQICHISPDISECVRLKILRLEENCLA  227 (277)
Q Consensus       201 n~l~~l~~~l~~~~~L~~L~l~~n~~~  227 (277)
                      |+|+.+|........|+.|++++|++.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            888877766444344788888887776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=6.3e-09  Score=89.54  Aligned_cols=169  Identities=15%  Similarity=0.163  Sum_probs=95.3

Q ss_pred             ccccEEEccCCCCC----------cCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccccc-chhh--h
Q psy3567          77 AVLRTLDISQNKIS----------KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSF--S  143 (277)
Q Consensus        77 ~~L~~L~l~~~~i~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~--~  143 (277)
                      ++|+.|.+.+....          .++..+..+++|+.|.++++.-..++. + .+++|++|++..+.+..- ...+  .
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            66777766543221          122334556777777777663122332 2 267777777776665421 1122  2


Q ss_pred             cCCCCCEEEccCC--C------CccCcccc--CCCCCCCEEEccCCCCcc-cCchhc---cc-eeeEEEccCCccCc---
Q psy3567         144 KLHNLKHLSLSQN--Q------LNKFPTVL--FNLQHLDVLDLSFNRIES-IPDGIG---KM-KVIEMNLNKNQICH---  205 (277)
Q Consensus       144 ~l~~L~~L~l~~n--~------l~~~~~~l--~~~~~L~~L~l~~n~l~~-l~~~~~---~~-~l~~L~l~~n~l~~---  205 (277)
                      .+++|++|+++.+  .      +..+...+  ..+++|++|.+.+|.++. .+..+.   .+ .|++|+++.|.++.   
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            5777888877431  1      11222222  246888888888888762 222221   22 47888888887773   


Q ss_pred             --CCcCccCCCCCCEEEcCCCccccCccCccccC-CCCccEEEcCCCe
Q psy3567         206 --ISPDISECVRLKILRLEENCLAINAIPTCILT-SSNVCTLNVEGNL  250 (277)
Q Consensus       206 --l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~l~l~~n~  250 (277)
                        ++..+..+++|+.|++++|.++. ..-..+.. +  ..+++++++.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~d-~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLSD-EMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCCH-HHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHhhcccCCcceEEECCCCcCCH-HHHHHHHHHc--CCEEEecCCc
Confidence              44444566788888888887762 22223332 2  3557777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.77  E-value=1.5e-09  Score=84.56  Aligned_cols=115  Identities=11%  Similarity=0.113  Sum_probs=74.0

Q ss_pred             hhhcCCCCCEEEccCC-CCc-----cCccccCCCCCCCEEEccCCCCcc-----cCchhccc-eeeEEEccCCccC----
Q psy3567         141 SFSKLHNLKHLSLSQN-QLN-----KFPTVLFNLQHLDVLDLSFNRIES-----IPDGIGKM-KVIEMNLNKNQIC----  204 (277)
Q Consensus       141 ~~~~l~~L~~L~l~~n-~l~-----~~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~~-~l~~L~l~~n~l~----  204 (277)
                      .+...++|++|++++| .+.     .+...+...++|++|++++|.++.     +...+... .+++|++++|.|+    
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445566666666666 555     233444555667777777776651     22222222 3677777777776    


Q ss_pred             -cCCcCccCCCCCCEEEc--CCCccccCc---cCccccCCCCccEEEcCCCeeeecc
Q psy3567         205 -HISPDISECVRLKILRL--EENCLAINA---IPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       205 -~l~~~l~~~~~L~~L~l--~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                       .+...+...++|++|++  ++|.++...   +...+...++|++|++++|.++.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence             35566777888999999  889887322   3345566788999999999887553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=2.6e-09  Score=91.93  Aligned_cols=183  Identities=11%  Similarity=0.116  Sum_probs=120.7

Q ss_pred             ccccEEEccCCCCC--c-------CCccccccCCCcEEeccCCcCc----------ccCccccCcccCceeecccccccc
Q psy3567          77 AVLRTLDISQNKIS--K-------FPLDLASYQLLKSLTFDQNKIE----------SLPKDIGTLEKLENVSGNCNLIKE  137 (277)
Q Consensus        77 ~~L~~L~l~~~~i~--~-------~~~~~~~l~~L~~L~l~~~~i~----------~~~~~~~~l~~L~~L~l~~n~~~~  137 (277)
                      ..++.|.+..+...  .       +..+...+++|+.|.+......          .+...+..++.|+.|.++++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            45777877765533  1       1223556889999998765332          233456778999999998774234


Q ss_pred             cchhhhcCCCCCEEEccCCCCccC-ccccC--CCCCCCEEEccC--CC------CcccCchhc--cc-eeeEEEccCCcc
Q psy3567         138 LPLSFSKLHNLKHLSLSQNQLNKF-PTVLF--NLQHLDVLDLSF--NR------IESIPDGIG--KM-KVIEMNLNKNQI  203 (277)
Q Consensus       138 l~~~~~~l~~L~~L~l~~n~l~~~-~~~l~--~~~~L~~L~l~~--n~------l~~l~~~~~--~~-~l~~L~l~~n~l  203 (277)
                      ++. + .+++|++|++..+.+..- ...+.  .+++|++|+++.  +.      +..+...+.  .. +|++|++.+|.+
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            443 3 378999999998887621 12332  689999999853  11      222222221  23 599999999998


Q ss_pred             Cc-CCcCc---cCCCCCCEEEcCCCccccC---ccCccccCCCCccEEEcCCCeeeecccccccc
Q psy3567         204 CH-ISPDI---SECVRLKILRLEENCLAIN---AIPTCILTSSNVCTLNVEGNLFEMKAFQQLDG  261 (277)
Q Consensus       204 ~~-l~~~l---~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~  261 (277)
                      +. .+..+   ..+++|++|+|+.|.++..   .++..+..+++|+.|+++.|.++.+..+.+..
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            72 22222   3578999999999998732   23444456799999999999998766555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=5.7e-09  Score=81.28  Aligned_cols=90  Identities=16%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             hHhhhccCccCEEEeecC-CCCc-----CChhHHHhhccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCcc
Q psy3567          46 KRHFETAKKTGVINLSHQ-GFKE-----FPDEMNELKAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIES  114 (277)
Q Consensus        46 ~~~l~~~~~L~~L~l~~~-~i~~-----~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~  114 (277)
                      ...+...+.|++|++++| .+..     +...+... ++|++|++++|++..     +...+...+.|++|++++|.|..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            356677778888888887 7762     22222222 566667776666652     23334444556666666665542


Q ss_pred             -----cCccccCcccCceeec--cccccc
Q psy3567         115 -----LPKDIGTLEKLENVSG--NCNLIK  136 (277)
Q Consensus       115 -----~~~~~~~l~~L~~L~l--~~n~~~  136 (277)
                           +...+...+.|++|++  ++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence                 2333444444444444  444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.34  E-value=1e-05  Score=70.22  Aligned_cols=83  Identities=14%  Similarity=0.347  Sum_probs=52.1

Q ss_pred             cCCCCCCCEEEccCCCCcccCchhc-cc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCcc-CccccCCCC
Q psy3567         165 LFNLQHLDVLDLSFNRIESIPDGIG-KM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAI-PTCILTSSN  240 (277)
Q Consensus       165 l~~~~~L~~L~l~~n~l~~l~~~~~-~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~  240 (277)
                      +..+..|+.+.+. +.++.++...+ .+ +|+++.+..+ ++.+.. +|..|.+|+.+.+..+ ++  .+ ..+|.++++
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~--~I~~~aF~~C~~  358 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT--KIPESAFSNCTA  358 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC--BCCGGGGTTCTT
T ss_pred             cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC--EEhHhHhhCCCC
Confidence            3345566666654 34444544432 22 4777877653 666655 4778888888888654 43  33 356778888


Q ss_pred             ccEEEcCCCeee
Q psy3567         241 VCTLNVEGNLFE  252 (277)
Q Consensus       241 L~~l~l~~n~~~  252 (277)
                      |+.+++.++...
T Consensus       359 L~~i~~~~~~~~  370 (394)
T 4gt6_A          359 LNNIEYSGSRSQ  370 (394)
T ss_dssp             CCEEEESSCHHH
T ss_pred             CCEEEECCceee
Confidence            888888887543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.18  E-value=1.1e-05  Score=70.06  Aligned_cols=193  Identities=14%  Similarity=0.179  Sum_probs=111.9

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc--------
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK--------  117 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--------  117 (277)
                      .+|..|++|+.+.+.++ +..++...+..+.+|+.+.+..+ +..++. .|.++..|+.+.+..+... +..        
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l  232 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV  232 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence            67899999999999765 45677777776688999888765 555544 4777777777766554321 111        


Q ss_pred             ---------------cccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCC
Q psy3567         118 ---------------DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRI  181 (277)
Q Consensus       118 ---------------~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l  181 (277)
                                     .+..+..++.+.+..+...--...|.....++.+......   ++ ..+..+.+|+.+.+..+ +
T Consensus       233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i  308 (394)
T 4fs7_A          233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-V  308 (394)
T ss_dssp             CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-C
T ss_pred             ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-c
Confidence                           2223333333333322211111223444444444333221   22 23345667777777543 4


Q ss_pred             cccCchh-ccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567         182 ESIPDGI-GKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN  249 (277)
Q Consensus       182 ~~l~~~~-~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  249 (277)
                      +.++... ... +|+.+++.+ .++.+.. +|..|.+|+.+++..+ ++ ..-..+|..+++|+++++..+
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             ceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            5554432 233 477777754 3677764 4778888888888765 43 122456778888888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.16  E-value=2.3e-05  Score=68.01  Aligned_cols=127  Identities=20%  Similarity=0.210  Sum_probs=73.7

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcC-------------
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKI-------------  112 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i-------------  112 (277)
                      .+|.+|.+|+.+.+.. .++.+.+..|..+.+|+.+++..+ +..++. .|..+..|+.+.+..+-.             
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence            6788899999999864 477888777777788999988654 555544 466777776655543210             


Q ss_pred             --------ccc-CccccCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEcc
Q psy3567         113 --------ESL-PKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLS  177 (277)
Q Consensus       113 --------~~~-~~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~  177 (277)
                              ..+ ..+|..+.+|+.+.+..+. ..++ ..|..+.+|+.+.+..+ +..++ ..+..+..|+.+.+.
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence                    011 1235556666666664332 2333 24566666666666543 33332 223344445544443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=1.2e-06  Score=71.82  Aligned_cols=59  Identities=22%  Similarity=0.294  Sum_probs=27.6

Q ss_pred             ccccEEEccCCCCCcCC---ccccccCCCcEEeccCCcCcccCccccCcc--cCceeeccccccc
Q psy3567          77 AVLRTLDISQNKISKFP---LDLASYQLLKSLTFDQNKIESLPKDIGTLE--KLENVSGNCNLIK  136 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~---~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~--~L~~L~l~~n~~~  136 (277)
                      ++|+.|++++|++..++   ..+..+++|+.|++++|.+..+. .+..+.  +|++|++++|.+.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence            45555555555555332   23345555555555555555431 122222  4444555444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.98  E-value=0.00014  Score=62.95  Aligned_cols=125  Identities=17%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             ccCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eee
Q psy3567         119 IGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVI  194 (277)
Q Consensus       119 ~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~  194 (277)
                      |..+..|+.+.+..+.. .+. ..|..+..|+.+.+. +.+..++. .+..+.+|+.+.+..+ ++.+... +..+ .|+
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            44555566665543322 222 346777788888775 34666654 4557899999999764 6666544 3344 599


Q ss_pred             EEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCee
Q psy3567         195 EMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF  251 (277)
Q Consensus       195 ~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~  251 (277)
                      ++.+..+ ++.+.. +|..|++|+.+++.++...    ...+..+.+|+.+.+..+.+
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC----------
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCE
Confidence            9998654 888876 4889999999999988654    24566778899888877644

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=1.1e-05  Score=66.02  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             CCCCCEEEccCCCCcccC---chhccc-eeeEEEccCCccCcCCcCccCCC--CCCEEEcCCCccccCccCc-------c
Q psy3567         168 LQHLDVLDLSFNRIESIP---DGIGKM-KVIEMNLNKNQICHISPDISECV--RLKILRLEENCLAINAIPT-------C  234 (277)
Q Consensus       168 ~~~L~~L~l~~n~l~~l~---~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~~~~~~-------~  234 (277)
                      +++|++|++++|.++.++   ..+..+ .|+.|++++|+|+.+. .+..++  +|++|+|++|++. +.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~-~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC-DTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG-GGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc-cccCcchhHHHHH
Confidence            445555555555554322   222222 2555555555555442 122222  6777777777765 34431       2


Q ss_pred             ccCCCCccEE
Q psy3567         235 ILTSSNVCTL  244 (277)
Q Consensus       235 ~~~~~~L~~l  244 (277)
                      +..+++|+.|
T Consensus       247 l~~~P~L~~L  256 (267)
T 3rw6_A          247 RERFPKLLRL  256 (267)
T ss_dssp             HHHCTTCCEE
T ss_pred             HHHCcccCeE
Confidence            4456666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.76  E-value=1.7e-05  Score=61.73  Aligned_cols=111  Identities=11%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             hcCCCCCEEEccCC-CCc-----cCccccCCCCCCCEEEccCCCCc-----ccCchhccc-eeeEEEccCCccC-----c
Q psy3567         143 SKLHNLKHLSLSQN-QLN-----KFPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKM-KVIEMNLNKNQIC-----H  205 (277)
Q Consensus       143 ~~l~~L~~L~l~~n-~l~-----~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~-~l~~L~l~~n~l~-----~  205 (277)
                      ..-+.|++|+++++ .+.     .+...+...+.|+.|++++|.++     .+...+... .+++|+++.|+|+     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455666666664 554     23444555566777777777766     122222222 3777777777776     3


Q ss_pred             CCcCccCCCCCCEEEcCCC---ccccC---ccCccccCCCCccEEEcCCCeeee
Q psy3567         206 ISPDISECVRLKILRLEEN---CLAIN---AIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       206 l~~~l~~~~~L~~L~l~~n---~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +...+...+.|++|+|++|   .+...   .+...+...+.|++|+++.|....
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~  171 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA  171 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence            4555666778888888765   33311   233456667888999988776554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.69  E-value=0.0023  Score=54.89  Aligned_cols=79  Identities=16%  Similarity=0.334  Sum_probs=45.1

Q ss_pred             CCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCcc-CccccCCCCcc
Q psy3567         167 NLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAI-PTCILTSSNVC  242 (277)
Q Consensus       167 ~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~  242 (277)
                      .+.+|+.+.+..+ ++.++... ..+ .|+++.+.++.++.++.. |..|.+|+.+.+..+ ++  .+ ..+|.++++|+
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~  336 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK--TIQVYAFKNCKALS  336 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCC
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc--EEHHHHhhCCCCCC
Confidence            3445555555332 33333332 222 477777777777777653 677777777777544 33  22 34566777777


Q ss_pred             EEEcCCC
Q psy3567         243 TLNVEGN  249 (277)
Q Consensus       243 ~l~l~~n  249 (277)
                      ++.+..+
T Consensus       337 ~i~ip~~  343 (379)
T 4h09_A          337 TISYPKS  343 (379)
T ss_dssp             CCCCCTT
T ss_pred             EEEECCc
Confidence            7776554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.60  E-value=4.7e-05  Score=59.22  Aligned_cols=66  Identities=12%  Similarity=0.154  Sum_probs=34.3

Q ss_pred             HhhhccCccCEEEeecC-CCC-----cCChhHHHhhccccEEEccCCCCC-----cCCccccccCCCcEEeccCCcCc
Q psy3567          47 RHFETAKKTGVINLSHQ-GFK-----EFPDEMNELKAVLRTLDISQNKIS-----KFPLDLASYQLLKSLTFDQNKIE  113 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~-~i~-----~~~~~~~~~~~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~i~  113 (277)
                      ..+..-+.|+.|+++++ .|.     .+.+.+... ..|+.|++++|++.     .+...+..-..|+.|+++.|.|.
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            44455667777777764 555     122222222 55666666666655     22223333455555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.31  E-value=0.00019  Score=54.74  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=42.8

Q ss_pred             CCCcEEeccCCcCccc-CccccCcccCceeeccccc-cccc-chhhhcC----CCCCEEEccCCC-CccC-ccccCCCCC
Q psy3567         100 QLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNL-IKEL-PLSFSKL----HNLKHLSLSQNQ-LNKF-PTVLFNLQH  170 (277)
Q Consensus       100 ~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~-~~~l-~~~~~~l----~~L~~L~l~~n~-l~~~-~~~l~~~~~  170 (277)
                      ..|++|+++++.|+.. -..+..+++|++|++++|. +..- -..++.+    ++|++|++++|. ++.- -..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3466666666655432 2334556666666666554 3211 0123332    357777776663 5421 123445677


Q ss_pred             CCEEEccCC-CCc
Q psy3567         171 LDVLDLSFN-RIE  182 (277)
Q Consensus       171 L~~L~l~~n-~l~  182 (277)
                      |++|++++| .++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            777777776 344

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.20  E-value=0.00081  Score=48.67  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             EEEccCCCCc--ccCchhccceeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567         173 VLDLSFNRIE--SIPDGIGKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA  227 (277)
Q Consensus       173 ~L~l~~n~l~--~l~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~  227 (277)
                      .++-++++++  .+|..+.. .+++|+|++|+|+.++.. |..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~-~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPV-DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCT-TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCc-CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555  55543221 255666666666666554 445556666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.19  E-value=0.006  Score=52.21  Aligned_cols=58  Identities=7%  Similarity=0.038  Sum_probs=27.1

Q ss_pred             hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccC
Q psy3567          48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQ  109 (277)
Q Consensus        48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~  109 (277)
                      +|..+ .|+.+.+..+ +..+....+.. .++....+..+ +..+. ..|.....++.+.+..
T Consensus       109 aF~~~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          109 VFQGT-DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred             eeccC-CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhccccccccccccc
Confidence            34443 5677776543 33444444444 34555554432 33332 2344555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.17  E-value=0.00046  Score=49.98  Aligned_cols=55  Identities=15%  Similarity=0.344  Sum_probs=42.9

Q ss_pred             CEEEeecCCCC--cCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCc
Q psy3567          56 GVINLSHQGFK--EFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE  113 (277)
Q Consensus        56 ~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~  113 (277)
                      ..++.+++.++  .+|..   ++.++++|+|++|+|+.+|.. |..+++|++|++++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888888  88864   336788888888888888764 677888888888888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.16  E-value=0.00024  Score=54.23  Aligned_cols=80  Identities=14%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             CCCCEEEccCCCCccC-ccccCCCCCCCEEEccCC-CCccc-Cchhccc-----eeeEEEccCCc-cCcCC-cCccCCCC
Q psy3567         146 HNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFN-RIESI-PDGIGKM-----KVIEMNLNKNQ-ICHIS-PDISECVR  215 (277)
Q Consensus       146 ~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n-~l~~l-~~~~~~~-----~l~~L~l~~n~-l~~l~-~~l~~~~~  215 (277)
                      .+|++||++++.++.. -..+..+++|++|++++| .+++- -..+...     .|++|++++|. ||.-. ..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3577777777766532 134456777888888777 46521 1112221     36666666653 55111 12445666


Q ss_pred             CCEEEcCCCc
Q psy3567         216 LKILRLEENC  225 (277)
Q Consensus       216 L~~L~l~~n~  225 (277)
                      |++|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6777766664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-08
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
           R L ++   ++     L    L+  L    N++ +LP  +  L  LE +  + N ++ + 
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMN 197
              + L  L+ L L  N+L +   +  L +   L +L+L  N +        ++  +  +
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 198 LNK 200
           ++ 
Sbjct: 119 VSS 121

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 5e-08
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK 192
             +  L     +L  + HL LS N+L   P  L  L+ L+VL  S N +E++       +
Sbjct: 8   KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR 66

Query: 193 VIEMNLNKNQICHISP--DISECVRLKILRLEENCLA 227
           + E+ L  N++   +    +  C RL +L L+ N L 
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 149 KHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISP 208
           + L L+   L      L  L  +  LDLS NR+ ++P  +  ++ +E+    +       
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 209 DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
            ++   RL+ L L  N L  +A    +++   +  LN++GN
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
           V++L+H+        + +L   +  LD+S N++   P  LA+ + L+ L    N +E++ 
Sbjct: 2   VLHLAHKDLTVLC-HLEQLLL-VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 117 KDIGTLEKLE-NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHL 171
                    E  +  N                L  L+L  N L +   +   L  +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 83  DISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSF 142
           ++   ++ +  L ++          D   + S P D+        ++   ++   L +  
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIE 61

Query: 143 SKLHNLKHLSLSQNQLNK---FPTVLFNLQHLDVLDLSFNRIESIPDG--IGKMKVIEMN 197
             +  L  L+LS N+L +     +++    +L +L+LS N ++S  +   I  +K+ E+ 
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 198 LNKNQICHISPDISECVRLKILRL 221
           L+ N +     D S  +     R 
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERF 145

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
           L+ L    NK+  LP     LE+L     + N + E+P       NLK L +  N L +F
Sbjct: 286 LEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP---ELPQNLKQLHVEYNPLREF 339

Query: 162 PTVLFNLQHLDV 173
           P +  +++ L +
Sbjct: 340 PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 142 FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKN 201
                +L+ L++S N+L + P +   L+    L  SFN +  +P+    +K  ++++  N
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEVPELPQNLK--QLHVEYN 334

Query: 202 QICHISPDISECVRLKI 218
            +            L++
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
              LE ++ + N + ELP        L+ L  S N L + P +  NL+    L + +N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQ---LHVEYNPL 336

Query: 182 ESIPDGIGKMKVIEMN 197
              PD    ++ + MN
Sbjct: 337 REFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L++S NK+ + P        L+ L    N +  +P+    L++L +V  N   ++E 
Sbjct: 286 LEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNLKQL-HVEYNP--LREF 339

Query: 139 PLSFSKLHNLK 149
           P     + +L+
Sbjct: 340 PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHI 206
               L L+   L+  P +  +L+    L  S N +  +P+    +K   + ++ N +  +
Sbjct: 39  QAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKS--LLVDNNNLKAL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            +N+S+    E P     L+     L  S N +++ P    +   LK L  + N +   P
Sbjct: 288 ELNVSNNKLIELPALPPRLE----RLIASFNHLAEVPELPQN---LKQLHVEYNPLREFP 340

Query: 117 KDIGTLEKL 125
               ++E L
Sbjct: 341 DIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
           N+  ++      L+ L++S N++  +P    +++ +    + N +  +         LK 
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL--IASFNHLAEVPELPQ---NLKQ 328

Query: 219 LRLEENCL 226
           L +E N L
Sbjct: 329 LHVEYNPL 336

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK 192
            LI++    ++     + L L   ++     +   L   D +D S N I  +       +
Sbjct: 6   ELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64

Query: 193 VIEMNLNKNQICHISPDISEC 213
           +  + +N N+IC I   + + 
Sbjct: 65  LKTLLVNNNRICRIGEGLDQA 85

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 153 LSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNLNKNQICHISPDIS 211
           L+   + +      N      LDL   +I  I +    +   + ++ + N+I  +     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 60

Query: 212 ECVRLKILRLEENC 225
              RLK L +  N 
Sbjct: 61  LLRRLKTLLVNNNR 74

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 9e-08
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 7/191 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVS-GNCNLIK 136
           LR +  S   + K P DL        L    NKI  +   D   L+ L  +   N  + K
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
             P +F+ L  L+ L LS+NQL + P  +        L +  N I  +   +       +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMI 127

Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEGNLFEMKA 255
            +        S  I       + +L    +A   I T       ++  L+++GN      
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187

Query: 256 FQQLDGYNNYM 266
              L G NN  
Sbjct: 188 AASLKGLNNLA 198

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 9/201 (4%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
            + L +    +           L  L +S+N++ + P  +      + L   +N+I  + 
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVR 116

Query: 117 KDI----GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
           K +      +  +E  +           +F  +  L ++ ++   +   P  L     L 
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLT 174

Query: 173 VLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL-RLEENCLAINAI 231
            L L  N+I  +     K       L  +     + D         L  L  N   +  +
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 232 PTCILTSSNVCTLNVEGNLFE 252
           P  +     +  + +  N   
Sbjct: 235 PGGLADHKYIQVVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 14/150 (9%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLENVS-GNCNLIK 136
           L  + I+   I+  P  L     L  L  D NKI       +  L  L  +     ++  
Sbjct: 152 LSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-------- 188
               S +   +L+ L L+ N+L K P  L + +++ V+ L  N I +I            
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 189 --GKMKVIEMNLNKNQICHISPDISECVRL 216
                  + +  N  Q   I P    CV +
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNR 180
           N  +   LP   ++L  L  L++S N L        NLQ  DV   + N+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 5/148 (3%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
           L  L ++ N++      LAS   L  L    N+I +L   +  L KL  +    N I  +
Sbjct: 221 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 278

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
               + L  L +L L++NQL     +  NL++L  L L FN I  I       K+  +  
Sbjct: 279 S-PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 336

Query: 199 NKNQICHISPDISECVRLKILRLEENCL 226
             N++  +   ++    +  L    N +
Sbjct: 337 ANNKVSDV-SSLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 24/144 (16%)

Query: 79  LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIG------------------ 120
           L  LD++ N+IS     L+    L  L    N+I ++    G                  
Sbjct: 243 LTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 121 ---TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
               L+ L  ++   N I ++    S L  L+ L  + N+++   + L NL +++ L   
Sbjct: 302 PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAG 359

Query: 178 FNRIESIPDGIGKMKVIEMNLNKN 201
            N+I  +       ++ ++ LN  
Sbjct: 360 HNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
             N I ++      L NL  LSL+ NQL    T L +L +L  LDL+ N+I ++    G 
Sbjct: 205 TNNQISDIT-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGL 262

Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250
            K+ E+ L  NQI +ISP       L  L   E         + I    N+  L +  N 
Sbjct: 263 TKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 251 FE 252
             
Sbjct: 319 IS 320

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
            +S + L  +  L   +  +      +  L +L  ++ S N++  I 
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDIT 82

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 23/226 (10%)

Query: 57  VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
             +   QG +  P  +       + + +  N+IS  P    S++  ++LT        L 
Sbjct: 15  TTSCPQQGLQAVPVGIPAA---SQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLA 69

Query: 117 KDIGTLEKLE------NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQ 169
           +               ++S N  L    P +F  L  L  L L +  L +    +   L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 170 HLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENC- 225
            L  L L  N ++++PD        +  + L+ N+I  +          L  L L +N  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 226 -------LAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNN 264
                           +   +N  +      L  ++A Q L   +N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.1 bits (92), Expect = 9e-05
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 1/139 (0%)

Query: 111 KIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170
             E     + T  +   + G    I+++  + S L   KHL+LS N + K  + L  +++
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMEN 71

Query: 171 LDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230
           L +L L  N I+ I +       +E              I + V L++L +  N +    
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131

Query: 231 IPTCILTSSNVCTLNVEGN 249
               +     +  L + GN
Sbjct: 132 EIDKLAALDKLEDLLLAGN 150

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
           +  L KL  +  + N I ++    + L NL  + L  NQ++     L N  +L ++ L+
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 18/49 (36%)

Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN 179
           N NL +      + L NL  L L +N L   P   F    L    L  N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 15/99 (15%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 80  RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE--NVSGNCNLIKE 137
           +TLD++   +          Q + +    ++ ++    +  +  +++  ++S +   +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 138 LPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLD 175
           L    S+   L++LSL   +L+      L    +L  L+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIP 185
            F        L +S+ +++  P+    NL+ L         ++ +P
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 127 NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNK-----FPTVLF-NLQHLDVLDLSFNR 180
            +S           S  +   L+ L L  N++         TV+   +  L  L+L+ NR
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 181 IESIPDGIGKMKVIEMNLNKNQI 203
                D + +++ +     + ++
Sbjct: 314 FSEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMKVIE-MNLNK 200
           +LK  +++         VL     +  + LS N I       + + I   K +E    + 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 201 NQICHISPDISEC 213
                +  +I E 
Sbjct: 69  IFTGRVKDEIPEA 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 147 NLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMKVI-EMNL 198
           +++ L +   +L+  ++  +L  LQ   V+ L    +     + I   +     + E+NL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 199 NKNQICHIS-PDISECVRLKILRLEENCL 226
             N++  +    + + ++    ++++  L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 6/65 (9%)

Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDL 176
           ++ L ++                L   + + L    L         + L     L  L+L
Sbjct: 4   IQSL-DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 177 SFNRI 181
             N +
Sbjct: 63  RSNEL 67

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
             + L  L++L LS+N ++     L  L++LDVL+L 
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.57

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-24  Score=175.11  Aligned_cols=198  Identities=25%  Similarity=0.355  Sum_probs=167.8

Q ss_pred             ccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCccccCcccCceee
Q psy3567          51 TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS  129 (277)
Q Consensus        51 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  129 (277)
                      +...+.++++++++++++|+.+.   +++++|++++|+++.+|. .|.++++|++|++++|+++.++. ++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence            44566778999999999987653   679999999999998775 58899999999999999987763 56789999999


Q ss_pred             cccccccccchhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchhc-cc-eeeEEEccCCccCcC
Q psy3567         130 GNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIG-KM-KVIEMNLNKNQICHI  206 (277)
Q Consensus       130 l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~-~~-~l~~L~l~~n~l~~l  206 (277)
                      +++|.+...+..+..+++|+.|++++|.+..++. .+..+.+++++++++|.++.++.... .+ .++.+++++|+++.+
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            9999998888888899999999999999887754 44568899999999999998876653 33 488999999999988


Q ss_pred             CcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         207 SPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       207 ~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      +.. +..+++|++|+|++|.++  .+|..+..+++|+.|+|++|++...
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccccccccccceeecccCCCc--ccChhHCCCCCCCEEEecCCCCCCC
Confidence            865 788999999999999997  7888888899999999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1.2e-23  Score=176.64  Aligned_cols=224  Identities=23%  Similarity=0.282  Sum_probs=180.0

Q ss_pred             CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeec-CCCC-cCChhHHHhhccccEEEccCCCCCcC-
Q psy3567          16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSH-QGFK-EFPDEMNELKAVLRTLDISQNKISKF-   92 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~-~~i~-~~~~~~~~~~~~L~~L~l~~~~i~~~-   92 (277)
                      ++.+|+|+++++.|..            .++..+++++.|++|++++ |+++ .+|+.+..+ ++|++|++++|++..+ 
T Consensus        51 ~v~~L~L~~~~l~g~~------------~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPY------------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECCCCSSCE------------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCCCCCCCC------------CCChHHhcCccccccccccccccccccccccccc-cccchhhhccccccccc
Confidence            4677888888777642            1234678889999999987 6777 789888887 8999999999998855 


Q ss_pred             CccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCC-CEEEccCCCCccC-ccccCCC
Q psy3567          93 PLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNL-KHLSLSQNQLNKF-PTVLFNL  168 (277)
Q Consensus        93 ~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L-~~L~l~~n~l~~~-~~~l~~~  168 (277)
                      +..+..+..|++++++.|.+. .+|..+..++.++++++++|.+. .+|..+..+.++ +.+++++|++... +..+..+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            445888999999999998776 46788999999999999999887 678888887765 8889999988844 4555554


Q ss_pred             CCCCEEEccCCCCc-ccCchhccce-eeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567         169 QHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV  246 (277)
Q Consensus       169 ~~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  246 (277)
                      . ...+++..+... .+|...+... ++.+++++|.++..+..++.+++|+.|++++|+++ +.+|..+.++++|++|+|
T Consensus       198 ~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~-g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEEC
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeec-ccCChHHhCCCCCCEEEC
Confidence            3 456888888766 4555555554 88899999999877777888899999999999998 789999999999999999


Q ss_pred             CCCeeeec
Q psy3567         247 EGNLFEMK  254 (277)
Q Consensus       247 ~~n~~~~~  254 (277)
                      ++|.+++.
T Consensus       276 s~N~l~g~  283 (313)
T d1ogqa_         276 SFNNLCGE  283 (313)
T ss_dssp             CSSEEEEE
T ss_pred             cCCccccc
Confidence            99999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=1.8e-23  Score=175.61  Aligned_cols=221  Identities=21%  Similarity=0.267  Sum_probs=185.3

Q ss_pred             CCCceeEecCC-CCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCC-c
Q psy3567          14 SPSKLTLLLPG-KKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKIS-K   91 (277)
Q Consensus        14 ~~~l~~l~l~~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~-~   91 (277)
                      -+++++|++++ |++.|.+|++              |+++++|++|++++|++..+++..+.....|+++++++|.+. .
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~--------------i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPA--------------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG--------------GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             Cccccccccccccccccccccc--------------cccccccchhhhccccccccccccccchhhhccccccccccccc
Confidence            46899999997 7888887764              577899999999999999776665555589999999999876 6


Q ss_pred             CCccccccCCCcEEeccCCcCc-ccCccccCcccC-ceeecccccccc-cchhhhcCCCCCEEEccCCCCc-cCccccCC
Q psy3567          92 FPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKL-ENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQLN-KFPTVLFN  167 (277)
Q Consensus        92 ~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L-~~L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~l~~  167 (277)
                      +|..+.+++.++++++++|.+. .+|..+..+..+ +.++++.|.+.. .+..+..+.. ..++++.+... .+|..++.
T Consensus       141 ~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~  219 (313)
T d1ogqa_         141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCT
T ss_pred             CchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            7888999999999999999998 578888888776 788899998874 4556666654 46889888776 56677778


Q ss_pred             CCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEE
Q psy3567         168 LQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN  245 (277)
Q Consensus       168 ~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  245 (277)
                      +++++.+++.+|.++..+..++.. .++.|++++|+++ .+|..++++++|++|+|++|.++ +.+|. +.++++|+.++
T Consensus       220 ~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~-g~iP~-~~~L~~L~~l~  297 (313)
T d1ogqa_         220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQ-GGNLQRFDVSA  297 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCC-STTGGGSCGGG
T ss_pred             cccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc-ccCCC-cccCCCCCHHH
Confidence            999999999999988655566655 4999999999999 89999999999999999999998 78874 57788999999


Q ss_pred             cCCCee
Q psy3567         246 VEGNLF  251 (277)
Q Consensus       246 l~~n~~  251 (277)
                      +++|+.
T Consensus       298 l~~N~~  303 (313)
T d1ogqa_         298 YANNKC  303 (313)
T ss_dssp             TCSSSE
T ss_pred             hCCCcc
Confidence            999974

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.4e-22  Score=162.29  Aligned_cols=196  Identities=22%  Similarity=0.289  Sum_probs=167.9

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL   94 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~   94 (277)
                      .++.+++-++++++. +|+.+.                +.+++|+|++|+|+.+|+..+...++|++|++++|+++.++.
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp----------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~   72 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP----------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV   72 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC----------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC----------------cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc
Confidence            356678888888874 565541                468999999999999987665555999999999999998764


Q ss_pred             cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCcccc-CCCCCCC
Q psy3567          95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVL-FNLQHLD  172 (277)
Q Consensus        95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~l-~~~~~L~  172 (277)
                       +..+++|++|++++|++...+..+..+++|++++++++....++. .+..+.+++++++++|.+..++... ..++.++
T Consensus        73 -~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          73 -DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             -CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccch
Confidence             578999999999999999888899999999999999999987754 5788899999999999999887654 4689999


Q ss_pred             EEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCcccc
Q psy3567         173 VLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAI  228 (277)
Q Consensus       173 ~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~  228 (277)
                      .+++++|+++.++.. +..+ ++++|++++|+|+.+|..+..+++|+.|+|++|++..
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            999999999987755 4445 4999999999999999999899999999999999873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=3.6e-20  Score=154.58  Aligned_cols=219  Identities=20%  Similarity=0.306  Sum_probs=138.5

Q ss_pred             CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567          15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL   94 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~   94 (277)
                      +.++.|++++|+++...+              ..|.++++|++|+++++.+..+++..+..+++|++|++++|+++.+|.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~--------------~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~   96 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKD--------------GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE   96 (305)
T ss_dssp             TTCCEEECCSSCCCCBCT--------------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS
T ss_pred             CCCCEEECcCCcCCCcCh--------------hHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc
Confidence            355666666665543322              235666777777777777776654434333677777777777766655


Q ss_pred             cccccCCCcEEeccCCcCcccC---------------------------ccccCcccCceeecccccccccchhhhcCCC
Q psy3567          95 DLASYQLLKSLTFDQNKIESLP---------------------------KDIGTLEKLENVSGNCNLIKELPLSFSKLHN  147 (277)
Q Consensus        95 ~~~~l~~L~~L~l~~~~i~~~~---------------------------~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~  147 (277)
                      .+  ...++.|+...|.+..++                           ..+..+++|+++++++|.+..++..+  .++
T Consensus        97 ~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~  172 (305)
T d1xkua_          97 KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPS  172 (305)
T ss_dssp             SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTT
T ss_pred             ch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCc
Confidence            32  234555555555544322                           23445566677777777666665432  456


Q ss_pred             CCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCC
Q psy3567         148 LKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEEN  224 (277)
Q Consensus       148 L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n  224 (277)
                      +++|++++|..... +..+..++.+++|++++|.++.++. ++... ++++|++++|+++.+|.++..+++|++|++++|
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC
Confidence            77777777766643 4456667778888888888776543 34444 478888888888888877888888888888888


Q ss_pred             ccccCccCc-------cccCCCCccEEEcCCCeeee
Q psy3567         225 CLAINAIPT-------CILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       225 ~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +++  .++.       .....++|+.+++++|+++.
T Consensus       253 ~i~--~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         253 NIS--AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCC--CCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccC--ccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            776  3332       22345678888888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9e-21  Score=156.77  Aligned_cols=201  Identities=21%  Similarity=0.272  Sum_probs=165.0

Q ss_pred             CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEecc-CCcCccc-CccccCcccCceee
Q psy3567          53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFD-QNKIESL-PKDIGTLEKLENVS  129 (277)
Q Consensus        53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~-~~~i~~~-~~~~~~l~~L~~L~  129 (277)
                      +.+++|++++|+|+.+|+..+...++|++|++++|++..++. .+..+..++.+... .+.+..+ +..++.+++|++++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            457899999999999987655555899999999999986655 46778888888765 5567666 45788899999999


Q ss_pred             cccccccccch-hhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCc
Q psy3567         130 GNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICH  205 (277)
Q Consensus       130 l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~  205 (277)
                      ++.|....++. .+....+|+.+++.+|.++.+++ .+..+++|++|++++|.++.++.. +..+ +++.+++++|+++.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999887654 57778899999999999998864 455788999999999999977654 3444 49999999999997


Q ss_pred             C-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567         206 I-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       206 l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                      + |..+..+++|++|++++|.+. +..+..+..+++|+++++++|++.+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCCCC
Confidence            6 456889999999999999998 45556788899999999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=2.6e-19  Score=153.38  Aligned_cols=232  Identities=19%  Similarity=0.248  Sum_probs=164.4

Q ss_pred             CCCceeEecCCCCcCCCCC----CceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChh----------------
Q psy3567          14 SPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDE----------------   71 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~----------------   71 (277)
                      .+++++|++++|.+++..+    +.+.++.+.++.+.  ..++.+++|+.++++++.++.++..                
T Consensus        65 L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  144 (384)
T d2omza2          65 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI  144 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred             CCCCCEEeCcCCcCCCCccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4678888888888876542    45566777766654  4577888888888887766532110                


Q ss_pred             -----------------------------------------------HHHhhccccEEEccCCCCCcCCccccccCCCcE
Q psy3567          72 -----------------------------------------------MNELKAVLRTLDISQNKISKFPLDLASYQLLKS  104 (277)
Q Consensus        72 -----------------------------------------------~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~  104 (277)
                                                                     ....+++++.+++++|.++.+++ +...++|++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~  223 (384)
T d2omza2         145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDE  223 (384)
T ss_dssp             CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred             cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCCCE
Confidence                                                           11112667788888888876654 456778888


Q ss_pred             EeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc
Q psy3567         105 LTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI  184 (277)
Q Consensus       105 L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l  184 (277)
                      +++++|.+..++ .+..+++|+.+++++|.+..++ .+..+++|++++++++.+..+++ +..++.++.+.+..|.++.+
T Consensus       224 L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~  300 (384)
T d2omza2         224 LSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI  300 (384)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC
T ss_pred             EECCCCCCCCcc-hhhcccccchhccccCccCCCC-cccccccCCEeeccCcccCCCCc-cccccccccccccccccccc
Confidence            888888887764 5677888888888888887765 37778888888888888877643 55667778888888777765


Q ss_pred             CchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         185 PDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       185 ~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +.......++++++++|+++.++. +..+++|++|++++|.++  .++ .+..+++|++|++++|.+++
T Consensus       301 ~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~--~l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         301 SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVS--DVS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC--CCG-GGGGCTTCCEEECCSSCCCB
T ss_pred             cccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCC--CCh-hHcCCCCCCEEECCCCcCCC
Confidence            543233347778888888877653 667778888888888776  343 56777888888888887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=3.3e-19  Score=148.59  Aligned_cols=222  Identities=18%  Similarity=0.202  Sum_probs=155.6

Q ss_pred             CCCCCCCceeEecCCCCcCCCCCCce------eeeccCCcchhHh-hhccCccCEEEeecCCCCcCChhHHHhhccccEE
Q psy3567          10 WDPSSPSKLTLLLPGKKNRGLIEGTI------FVLKMGNSATKRH-FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTL   82 (277)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L   82 (277)
                      .+...+++++|++++|.+....+..+      ..+.+.++.+... -.....++.|++.++.+..++...+........+
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l  129 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV  129 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             HhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccc
Confidence            34556789999999998886644333      2223333222110 0112234444444444444444444333444445


Q ss_pred             EccCCCCC---cCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCC
Q psy3567          83 DISQNKIS---KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQL  158 (277)
Q Consensus        83 ~l~~~~i~---~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l  158 (277)
                      +...+...   ..+..+..+++|+++++++|.+..++..+  .+++++|++++|..... +..+..++.++.|++++|.+
T Consensus       130 ~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccc
Confidence            55444333   12334777889999999999998887654  67899999999988754 56789999999999999999


Q ss_pred             ccCc-cccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcC-------ccCCCCCCEEEcCCCccccC
Q psy3567         159 NKFP-TVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-------ISECVRLKILRLEENCLAIN  229 (277)
Q Consensus       159 ~~~~-~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~-------l~~~~~L~~L~l~~n~~~~~  229 (277)
                      ..++ ..+..+++|++|++++|.++.+|.++..++ +++|++++|+|+.++..       ....++|+.|++++|++...
T Consensus       208 ~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             cccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            9874 456678999999999999999998888775 99999999999987643       34567899999999998744


Q ss_pred             ccCc
Q psy3567         230 AIPT  233 (277)
Q Consensus       230 ~~~~  233 (277)
                      .++.
T Consensus       288 ~~~~  291 (305)
T d1xkua_         288 EIQP  291 (305)
T ss_dssp             GSCG
T ss_pred             cCCH
Confidence            5544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-19  Score=150.13  Aligned_cols=196  Identities=20%  Similarity=0.280  Sum_probs=165.5

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeec-cc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG-NC  132 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l-~~  132 (277)
                      ..+++++++++.+|..+   +..+++|++++|+++.+|+ .|.++++|++|+++++.+..++. .+.....++++.. ..
T Consensus        14 ~~v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            45788888899999754   3679999999999998886 59999999999999999997754 5667788888875 56


Q ss_pred             ccccccc-hhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCc
Q psy3567         133 NLIKELP-LSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISP  208 (277)
Q Consensus       133 n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~  208 (277)
                      +.+..++ ..|..+++|++|++++|.+..++. .+....+|+.+++++|.++.++.. +... ++++|++++|+++.++.
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            6677774 568999999999999999987654 455788999999999999988755 4344 49999999999998876


Q ss_pred             C-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567         209 D-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       209 ~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      . +..+++|+.+++++|.++ +..|..+..++++++|++++|.++...
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhhccccccchhhhhhcccc-ccChhHhhhhhhccccccccccccccc
Confidence            4 788999999999999998 577889999999999999999998643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=7.5e-19  Score=150.50  Aligned_cols=230  Identities=24%  Similarity=0.295  Sum_probs=173.3

Q ss_pred             CCceeEecCCCCcCCC----CCCceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCC
Q psy3567          15 PSKLTLLLPGKKNRGL----IEGTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNK   88 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~----~~~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~   88 (277)
                      .++++|++++++++..    ..+.++++.+.++.+.  ..++++++|++|++++|++..+++ +..+ ++|+.|++.++.
T Consensus        44 ~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l-~~L~~L~~~~~~  121 (384)
T d2omza2          44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANL-TNLTGLTLFNNQ  121 (384)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTC-TTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccc-cccccccccccc
Confidence            4688899998877642    1256677777777664  458888999999999999887765 4455 888888887766


Q ss_pred             CCcCC----------------------------------------------------------------ccccccCCCcE
Q psy3567          89 ISKFP----------------------------------------------------------------LDLASYQLLKS  104 (277)
Q Consensus        89 i~~~~----------------------------------------------------------------~~~~~l~~L~~  104 (277)
                      +..++                                                                ..+..+++++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (384)
T d2omza2         122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES  201 (384)
T ss_dssp             CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccce
Confidence            54211                                                                12445677888


Q ss_pred             EeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc
Q psy3567         105 LTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI  184 (277)
Q Consensus       105 L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l  184 (277)
                      ++++++.+..++. ....++|+++++++|.+..++ .+..+++|+.+++++|.+..+++ +..+++|++++++++.++.+
T Consensus       202 l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         202 LIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCC
T ss_pred             eeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCC
Confidence            8888888877643 456778899999988888765 57778889999999998887754 66788899999999888877


Q ss_pred             CchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         185 PDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       185 ~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      +.......+..+++..|+++.++ .+..+++++.+++++|.++  .++ .+..+++|++|++++|.++.
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~--~l~-~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNIS--DIS-PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCS--CCG-GGGGCTTCCEEECCSSCCCC
T ss_pred             Ccccccccccccccccccccccc-ccchhcccCeEECCCCCCC--CCc-ccccCCCCCEEECCCCCCCC
Confidence            65444445788888888888764 3677888999999999887  343 37788899999999998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=5.8e-19  Score=141.02  Aligned_cols=189  Identities=18%  Similarity=0.324  Sum_probs=139.5

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCcee
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV  128 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  128 (277)
                      +.++.+|+.|++.+|.|+.++ ++..+ ++|++|++++|++..+++ +..+++++++++++|.++.++ .++.+++|+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l-~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GVQYL-NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEECCCCCCCcch-hHhcC-CCCcEeecCCceeecccc-ccccccccccccccccccccc-ccccccccccc
Confidence            456677888888888888875 45555 888888888888876654 778888888888888877664 46778888888


Q ss_pred             ecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC
Q psy3567         129 SGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS  207 (277)
Q Consensus       129 ~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~  207 (277)
                      .++++....++ .+...+.++.+.++.+.+.... .+..+++|++|.+++|.++..+. ++.+ ++++|++++|+++.++
T Consensus       113 ~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         113 DLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             ECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccc-hhccccchhhhhchhhhhchhh-hhccccccccccccccccccchh-hcccccceecccCCCccCCCh
Confidence            88877766543 3566777888888777766553 34566788888888888775544 3333 4888888888888775


Q ss_pred             cCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCC
Q psy3567         208 PDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG  248 (277)
Q Consensus       208 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  248 (277)
                      . +..+++|++|++++|+++  .++ .+.++++|+.|++++
T Consensus       190 ~-l~~l~~L~~L~Ls~N~lt--~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 P-LASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEE
T ss_pred             h-hcCCCCCCEEECcCCcCC--CCc-ccccCCCCCEEEeeC
Confidence            4 677888888888888876  444 367788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.9e-18  Score=136.40  Aligned_cols=164  Identities=23%  Similarity=0.313  Sum_probs=121.2

Q ss_pred             ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCC
Q psy3567          77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN  156 (277)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n  156 (277)
                      .+++.|++++|.+..++ .+..+++|++|++++|.++.++ .++.+++|++|++++|.+..++ .+..+++|+.+++.+|
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccc
Confidence            67777777777777655 3667777888888887777665 3566777888888777777765 4677788888888887


Q ss_pred             CCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcccc
Q psy3567         157 QLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCIL  236 (277)
Q Consensus       157 ~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~  236 (277)
                      .+..++ .+..++.++.++++.|.++..+......+++++++++|+++.++. +..+++|+.|++++|+++  .++ .+.
T Consensus       123 ~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~--~l~-~l~  197 (210)
T d1h6ta2         123 GISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--DLR-ALA  197 (210)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--BCG-GGT
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCC--CCh-hhc
Confidence            776663 456677888888888887765432222248888888888887754 778889999999999887  554 578


Q ss_pred             CCCCccEEEcCC
Q psy3567         237 TSSNVCTLNVEG  248 (277)
Q Consensus       237 ~~~~L~~l~l~~  248 (277)
                      ++++|++|++++
T Consensus       198 ~l~~L~~L~Ls~  209 (210)
T d1h6ta2         198 GLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCSEEEEEE
T ss_pred             CCCCCCEEEccC
Confidence            888999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=3e-18  Score=134.07  Aligned_cols=176  Identities=24%  Similarity=0.366  Sum_probs=122.8

Q ss_pred             EeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccccc
Q psy3567          59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL  138 (277)
Q Consensus        59 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l  138 (277)
                      .++.+.++..+. ...+ +++++|+++++.+..++ .+..+++|++|++++|+++.+++ ++.+++|++|++++|.+..+
T Consensus        24 ~l~~~~~~~~~~-~~~l-~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          24 VLGKTNVTDTVS-QTDL-DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             HTTCSSTTSEEC-HHHH-TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             HhCCCCCCCccC-HHHh-cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccc
Confidence            344555554432 2334 67778888887777664 46677788888888887776654 77777788888887777766


Q ss_pred             chhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCE
Q psy3567         139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI  218 (277)
Q Consensus       139 ~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~  218 (277)
                      + .+..++.|+.++++++....++ .+..+++|+.+++++|.+..++......+++++++.+|+++.++. ++++++|++
T Consensus       100 ~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~  176 (199)
T d2omxa2         100 T-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLER  176 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             c-cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCcc-ccCCCCCCE
Confidence            5 3677788888888877766653 456677888888888877766532222347788888888877753 677888888


Q ss_pred             EEcCCCccccCccCccccCCCCccEE
Q psy3567         219 LRLEENCLAINAIPTCILTSSNVCTL  244 (277)
Q Consensus       219 L~l~~n~~~~~~~~~~~~~~~~L~~l  244 (277)
                      |++++|+++  .++ .+.++++|++|
T Consensus       177 L~ls~N~i~--~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNKVS--DIS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCC--CCG-GGGGCTTCSEE
T ss_pred             EECCCCCCC--CCc-cccCCCCCCcC
Confidence            888888886  443 56777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.1e-18  Score=136.11  Aligned_cols=166  Identities=26%  Similarity=0.367  Sum_probs=142.9

Q ss_pred             hccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceee
Q psy3567          50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS  129 (277)
Q Consensus        50 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  129 (277)
                      .++..+++|+++++.++.+++ +..+ ++|++|++++|+++.+++ +..+++|++|++++|+++.++ .+..+++|+.++
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~~-l~~l-~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQG-IQYL-PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             HHhcCccEEECcCCCCCCchh-HhhC-CCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccccc
Confidence            356789999999999998874 5555 999999999999998774 678999999999999999876 588899999999


Q ss_pred             cccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCc
Q psy3567         130 GNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISP  208 (277)
Q Consensus       130 l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~  208 (277)
                      ++++....++ .+..+++++.+++++|.+...+ .+..+++|+++++++|.++.++. +..+ .+++|++++|+++.++ 
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-  194 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-  194 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred             cccccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-
Confidence            9999988765 5888999999999999988764 46678999999999999998765 4455 5999999999999987 


Q ss_pred             CccCCCCCCEEEcCC
Q psy3567         209 DISECVRLKILRLEE  223 (277)
Q Consensus       209 ~l~~~~~L~~L~l~~  223 (277)
                      .+..+++|++|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            588999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=9.1e-18  Score=131.29  Aligned_cols=163  Identities=20%  Similarity=0.361  Sum_probs=139.1

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCcee
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV  128 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  128 (277)
                      ...++++++|+++++.++.++. +..+ ++|++|++++|+++.+++ +.++++|++|++++|.+..++ .+..++.|+++
T Consensus        36 ~~~l~~l~~L~l~~~~i~~l~~-l~~l-~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKSIDG-VEYL-NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTT-GGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             HHHhcCCCEEECCCCCCCCccc-cccC-CCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccc
Confidence            3567889999999999998864 5555 899999999999998775 889999999999999988776 47889999999


Q ss_pred             ecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC
Q psy3567         129 SGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS  207 (277)
Q Consensus       129 ~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~  207 (277)
                      +++++....++ .+..+++|+.+++++|.+..++ .+..+++++.|++.+|.++.++. ++.+ ++++|++++|+++.++
T Consensus       112 ~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         112 TLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            99998887664 5788999999999999988775 57789999999999999998865 4444 5999999999999986


Q ss_pred             cCccCCCCCCEE
Q psy3567         208 PDISECVRLKIL  219 (277)
Q Consensus       208 ~~l~~~~~L~~L  219 (277)
                       .++++++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             47788888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=6.7e-18  Score=134.73  Aligned_cols=188  Identities=19%  Similarity=0.313  Sum_probs=154.4

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccc
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLI  135 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~  135 (277)
                      ..++++.++++.+. ....+ .+|+.|++.+|+++.++ .+.++++|++|++++|.+..+.. +..+++++++++++|.+
T Consensus        22 ~~~~l~~~~~~d~~-~~~~l-~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV-TQADL-DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHHHTTCSSTTSEE-CHHHH-HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred             HHHHhCCCCcCCcC-CHHHc-CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccc
Confidence            33456667777554 23555 89999999999999885 68999999999999999987753 88999999999999998


Q ss_pred             cccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCC
Q psy3567         136 KELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVR  215 (277)
Q Consensus       136 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~  215 (277)
                      ..++ .+..+++|+.++++++....++ .+...+.+..+.++.+.+...........++++++++|.++.++. ++++++
T Consensus        98 ~~i~-~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~  174 (227)
T d1h6ua2          98 KNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSK  174 (227)
T ss_dssp             SCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             cccc-cccccccccccccccccccccc-hhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hccccc
Confidence            8775 5788999999999998877664 355678899999999988765443334459999999999987654 788999


Q ss_pred             CCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         216 LKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                      |+.|++++|+++  .++ .+.++++|++|++++|+++.
T Consensus       175 L~~L~Ls~n~l~--~l~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         175 LTTLKADDNKIS--DIS-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CCEEECCSSCCC--CCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ceecccCCCccC--CCh-hhcCCCCCCEEECcCCcCCC
Confidence            999999999997  454 47889999999999998875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-16  Score=127.59  Aligned_cols=191  Identities=14%  Similarity=0.145  Sum_probs=104.4

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc-CCc-cccccCCCcEEeccC-CcCccc-CccccCcccCceee
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK-FPL-DLASYQLLKSLTFDQ-NKIESL-PKDIGTLEKLENVS  129 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~-~~~~l~~L~~L~l~~-~~i~~~-~~~~~~l~~L~~L~  129 (277)
                      .+++|++++|+|+.+|+..+..+++|++|++++|.+.. ++. .|..++.++++.+.. +.+... +..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            45666666666666665444433666666666666553 222 356666666666543 345443 33456666666666


Q ss_pred             cccccccccch--hhhcCCCCCEEEccCCCCccCcc-ccCCC-CCCCEEEccCCCCcccCchhccc-eeeE-EEccCCcc
Q psy3567         130 GNCNLIKELPL--SFSKLHNLKHLSLSQNQLNKFPT-VLFNL-QHLDVLDLSFNRIESIPDGIGKM-KVIE-MNLNKNQI  203 (277)
Q Consensus       130 l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~~~~-~l~~~-~~L~~L~l~~n~l~~l~~~~~~~-~l~~-L~l~~n~l  203 (277)
                      +..+.+...+.  .+..+..+..+...++.+..++. .+..+ ..++.+++++|.++.++...+.. ++.+ +++.+|++
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence            66666654432  23334444444455555555432 22222 35666666666666655544333 3333 34556666


Q ss_pred             CcCCcC-ccCCCCCCEEEcCCCccccCccCc-cccCCCCccEEEc
Q psy3567         204 CHISPD-ISECVRLKILRLEENCLAINAIPT-CILTSSNVCTLNV  246 (277)
Q Consensus       204 ~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~l~l  246 (277)
                      +.+|.. +..+++|++|++++|+++  .+|. .+.++++|+.+++
T Consensus       190 ~~l~~~~f~~l~~L~~L~Ls~N~l~--~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         190 EELPNDVFHGASGPVILDISRTRIH--SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCTTTTTTSCCCSEEECTTSCCC--CCCSSSCTTCCEEESSSE
T ss_pred             ccccHHHhcCCCCCCEEECCCCcCC--ccCHHHHcCCcccccCcC
Confidence            666654 566677777777777665  4433 3444454444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.4e-16  Score=126.54  Aligned_cols=193  Identities=19%  Similarity=0.223  Sum_probs=153.1

Q ss_pred             CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcc-c-CccccCcccCceeecc-
Q psy3567          56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIES-L-PKDIGTLEKLENVSGN-  131 (277)
Q Consensus        56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~-~-~~~~~~l~~L~~L~l~-  131 (277)
                      +++++++..++.+|+.++   +++++|++++|+++.+|+ .|.++++|++|++++|.+.. + +..+..++.++++.+. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            689999999999997653   689999999999998877 58999999999999998875 4 3468889999999864 


Q ss_pred             cccccccc-hhhhcCCCCCEEEccCCCCccCcc--ccCCCCCCCEEEccCCCCcccCchh-ccc--eeeEEEccCCccCc
Q psy3567         132 CNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPT--VLFNLQHLDVLDLSFNRIESIPDGI-GKM--KVIEMNLNKNQICH  205 (277)
Q Consensus       132 ~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~l~~l~~~~-~~~--~l~~L~l~~n~l~~  205 (277)
                      ++.+..++ ..|..+++|+++++++|.+...+.  .+..++.+..+...++.+..++... ...  .+..+++.+|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            46666554 458999999999999999886643  2334566666677777888765443 222  47889999999999


Q ss_pred             CCcCccCCCCCCEE-EcCCCccccCccCc-cccCCCCccEEEcCCCeeee
Q psy3567         206 ISPDISECVRLKIL-RLEENCLAINAIPT-CILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       206 l~~~l~~~~~L~~L-~l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~  253 (277)
                      ++......+++..+ ++++|.++  .+|. .+.++++|++|++++|.++.
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~--~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCC--CCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             cccccccchhhhccccccccccc--cccHHHhcCCCCCCEEECCCCcCCc
Confidence            98887777777666 46777787  5654 57889999999999998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=6.5e-17  Score=125.62  Aligned_cols=167  Identities=19%  Similarity=0.229  Sum_probs=127.3

Q ss_pred             cCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc-CC-ccccccCCCcEEeccCCcCccc-CccccCcccCceeecc
Q psy3567          55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK-FP-LDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGN  131 (277)
Q Consensus        55 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~-~~-~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~  131 (277)
                      .+++++++++++.+|+.+   ++++++|++++|+|+. ++ ..|.++++|++|++++|.+..+ +..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            367999999999999865   3789999999999974 43 4589999999999999999876 4578889999999999


Q ss_pred             cccccccch-hhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchhc-cceeeEEEccCCccC-cCC
Q psy3567         132 CNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIG-KMKVIEMNLNKNQIC-HIS  207 (277)
Q Consensus       132 ~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~-~~~l~~L~l~~n~l~-~l~  207 (277)
                      +|.+..++. .|..+++|++|++++|.+..+++ .+..+++|+++++++|.+.......+ ...+....+..+.++ ..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            999998865 58999999999999999998865 45678999999999998874332221 112444455555555 333


Q ss_pred             cCccCCCCCCEEEcCCCccc
Q psy3567         208 PDISECVRLKILRLEENCLA  227 (277)
Q Consensus       208 ~~l~~~~~L~~L~l~~n~~~  227 (277)
                      ..   +..++.++++.|.++
T Consensus       167 ~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             TT---TTTSBGGGSCTTTCC
T ss_pred             hh---hcCCEeeecCHhhCc
Confidence            33   344555666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=8.5e-15  Score=123.16  Aligned_cols=225  Identities=24%  Similarity=0.296  Sum_probs=135.7

Q ss_pred             CceeEecCCCCcCCC--CCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567          16 SKLTLLLPGKKNRGL--IEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP   93 (277)
Q Consensus        16 ~l~~l~l~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~   93 (277)
                      ++.+|++++++++..  .++++.++.+..+.+...-....+|+.|++++|+++.++.    +++.|++|++++|.+..+|
T Consensus        39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n~l~~lp  114 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEKLP  114 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSSCC
T ss_pred             CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhh----hcccccccccccccccccc
Confidence            466788888887642  2245566666665554222334577888888887776653    2356888888888887776


Q ss_pred             ccccccCCCcEEeccCCcCcccCc-------------------cccCcccCceeeccccccccc----------------
Q psy3567          94 LDLASYQLLKSLTFDQNKIESLPK-------------------DIGTLEKLENVSGNCNLIKEL----------------  138 (277)
Q Consensus        94 ~~~~~l~~L~~L~l~~~~i~~~~~-------------------~~~~l~~L~~L~l~~n~~~~l----------------  138 (277)
                      . +..+++|++++++++.+...+.                   .+..+..++.+.+..+.....                
T Consensus       115 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  193 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI  193 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred             c-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccc
Confidence            4 5677888888887776653321                   133344555555554443211                


Q ss_pred             ---chhhhcCCCCCEEEccCCCCccCccccC-----------------CCCCCCEEEccCCCCc---ccCchh-------
Q psy3567         139 ---PLSFSKLHNLKHLSLSQNQLNKFPTVLF-----------------NLQHLDVLDLSFNRIE---SIPDGI-------  188 (277)
Q Consensus       139 ---~~~~~~l~~L~~L~l~~n~l~~~~~~l~-----------------~~~~L~~L~l~~n~l~---~l~~~~-------  188 (277)
                         ...+..++.++.+++.+|....++....                 ....+...++..+.+.   .++...       
T Consensus       194 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~  273 (353)
T d1jl5a_         194 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS  273 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccc
Confidence               0123445667777777765554332111                 1123333443333222   111110       


Q ss_pred             -------ccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567         189 -------GKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM  253 (277)
Q Consensus       189 -------~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  253 (277)
                             ... .+++|++++|+++.+|..   .++|+.|++++|.++  .+|..   +++|++|++++|+++.
T Consensus       274 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~--~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         274 NEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA--EVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             SCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS--CCCCC---CTTCCEEECCSSCCSS
T ss_pred             CccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCC--ccccc---cCCCCEEECcCCcCCC
Confidence                   111 478899999999988864   478899999999887  66653   4578999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=8.6e-16  Score=119.14  Aligned_cols=169  Identities=17%  Similarity=0.245  Sum_probs=100.5

Q ss_pred             cccEEEccCCCCCcCCccccccCCCcEEeccCCcCcc-c-CccccCcccCceeecccccccccc-hhhhcCCCCCEEEcc
Q psy3567          78 VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-L-PKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLS  154 (277)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~-~-~~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~  154 (277)
                      ..++++.++++++.+|..+.  +++++|++++|+|+. + +..|..+++|++|++++|.+..++ ..|..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            34567777888887777653  567888888888764 3 345677777777777777777554 356677777777777


Q ss_pred             CCCCccCcc-ccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCcc
Q psy3567         155 QNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI  231 (277)
Q Consensus       155 ~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~  231 (277)
                      +|++..+++ .+..+++|++|++++|.|+.++... ..+ +++++++++|.+.......+-...++.+.+..+.++ ...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~-c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR-CGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCB-BCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeE-eCC
Confidence            777776654 3456777777777777777665443 233 366666666665543322111122344444444444 233


Q ss_pred             CccccCCCCccEEEcCCCeee
Q psy3567         232 PTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       232 ~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      |..+   ..++.++++.|.+.
T Consensus       166 p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         166 PSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             STTT---TTSBGGGSCTTTCC
T ss_pred             Chhh---cCCEeeecCHhhCc
Confidence            3322   23334445555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=5.6e-15  Score=106.11  Aligned_cols=100  Identities=23%  Similarity=0.384  Sum_probs=49.9

Q ss_pred             EEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccc
Q psy3567          57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK  136 (277)
Q Consensus        57 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~  136 (277)
                      +|++++|+++.++. +..+ ++|++|++++|+++.+|+.+..+++|++|++++|.++.++ +++.+++|+++++++|.+.
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l-~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQL-LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGG-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcc-cccC-CCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            45555555555442 3333 4555555555555555555555555555555555555443 2444555555555555554


Q ss_pred             ccc--hhhhcCCCCCEEEccCCCCc
Q psy3567         137 ELP--LSFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus       137 ~l~--~~~~~l~~L~~L~l~~n~l~  159 (277)
                      .++  ..+..+++|+.+++++|.+.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            443  12444445555555555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=114.61  Aligned_cols=130  Identities=18%  Similarity=0.203  Sum_probs=81.9

Q ss_pred             CcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEc
Q psy3567         121 TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNL  198 (277)
Q Consensus       121 ~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l  198 (277)
                      ...++++|++++|.+..++..+..+++|+.|++++|.+.+++ .+..+++|++|++++|.++.++..+ ..+ .+++|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            444455555555555555444455566666666666666553 3555666666666666666665443 223 3667777


Q ss_pred             cCCccCcCCc--CccCCCCCCEEEcCCCccccCccCc----cccCCCCccEEEcCCCeeeecc
Q psy3567         199 NKNQICHISP--DISECVRLKILRLEENCLAINAIPT----CILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       199 ~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      ++|+++.++.  .+..+++|+++++++|+++  ..|.    .+..+++|++||  +..++.++
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~--~~~~~r~~~i~~lp~L~~LD--~~~i~~~e  153 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLD--FQKVKLKE  153 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEET--TEECCHHH
T ss_pred             ccccccccccccccccccccchhhcCCCccc--cccchHHHHHHHCCCcCeeC--CCCCCHHH
Confidence            7777776653  4677889999999999886  4443    467788888875  55665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=7.1e-15  Score=105.55  Aligned_cols=103  Identities=22%  Similarity=0.367  Sum_probs=75.9

Q ss_pred             cEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCc
Q psy3567          80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~  159 (277)
                      |+|++++|+++.++ .+.++++|++|++++|++..+|..++.+++|++|++++|.+..++ .+..+++|+++++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            46788888887776 377788888888888888877777777778888888888777775 4677777777777777777


Q ss_pred             cCc--cccCCCCCCCEEEccCCCCccc
Q psy3567         160 KFP--TVLFNLQHLDVLDLSFNRIESI  184 (277)
Q Consensus       160 ~~~--~~l~~~~~L~~L~l~~n~l~~l  184 (277)
                      .++  ..+..+++|+++++++|.++..
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            664  2455667777777777766543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-15  Score=113.53  Aligned_cols=125  Identities=20%  Similarity=0.277  Sum_probs=83.1

Q ss_pred             hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCcc-ccCcccCce
Q psy3567          49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLEN  127 (277)
Q Consensus        49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~  127 (277)
                      +.++.++++|++++|+|+.++... ..+++|++|++++|+++.++ .+..+++|++|++++|++..++.. +..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~-~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGG-GGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccc-cccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            345566777777777777776433 33377777777777777663 466777777777777777776553 345777777


Q ss_pred             eecccccccccch--hhhcCCCCCEEEccCCCCccCcc----ccCCCCCCCEEE
Q psy3567         128 VSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLNKFPT----VLFNLQHLDVLD  175 (277)
Q Consensus       128 L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~  175 (277)
                      |++++|.+..++.  .+..+++|+++++++|.+...+.    .+..+++|++|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777777766543  45666777777777777665543    244566666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.55  E-value=2.3e-13  Score=114.24  Aligned_cols=219  Identities=21%  Similarity=0.313  Sum_probs=147.4

Q ss_pred             CCceeEecCCCCcCCCCC---CceeeeccCCcchhHhhhcc-CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCC
Q psy3567          15 PSKLTLLLPGKKNRGLIE---GTIFVLKMGNSATKRHFETA-KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKIS   90 (277)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~---~~~~~l~~~~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~   90 (277)
                      +++++|++++|+++ .+|   ..+..+.+.++... .+..+ +.|++|++++|.++.+|+ ...+ ++|++|+++++.+.
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~~n~l~~lp~-~~~l-~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQLEKLPE-LQNS-SFLKIIDVDNNSLK  133 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCS-CCCSCCTTCCEEECCSSCCSSCCC-CTTC-TTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCCCc-ccccchhhhhhhhhhhcccc-hhhhhccccccccccccccccccc-hhhh-ccceeecccccccc
Confidence            58999999999987 455   45667777666553 33444 369999999999999986 3444 89999999988776


Q ss_pred             cCC-------------------ccccccCCCcEEeccCCcCcccC-------------------ccccCcccCceeeccc
Q psy3567          91 KFP-------------------LDLASYQLLKSLTFDQNKIESLP-------------------KDIGTLEKLENVSGNC  132 (277)
Q Consensus        91 ~~~-------------------~~~~~l~~L~~L~l~~~~i~~~~-------------------~~~~~l~~L~~L~l~~  132 (277)
                      ..+                   ..+..++.++.+.+..+....++                   .....++.++.++++.
T Consensus       134 ~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~  213 (353)
T d1jl5a_         134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN  213 (353)
T ss_dssp             CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            332                   12445677788888777654221                   1234567788888887


Q ss_pred             ccccccchhhh-----------------cCCCCCEEEccCCCCccC---c--------------cccCCCCCCCEEEccC
Q psy3567         133 NLIKELPLSFS-----------------KLHNLKHLSLSQNQLNKF---P--------------TVLFNLQHLDVLDLSF  178 (277)
Q Consensus       133 n~~~~l~~~~~-----------------~l~~L~~L~l~~n~l~~~---~--------------~~l~~~~~L~~L~l~~  178 (277)
                      +....++....                 ....+...++..+.+..+   +              .....+++|++|++++
T Consensus       214 n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  293 (353)
T d1jl5a_         214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN  293 (353)
T ss_dssp             SCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCC
Confidence            76654432111                 112233444433322211   1              1112357899999999


Q ss_pred             CCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcC
Q psy3567         179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVE  247 (277)
Q Consensus       179 n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  247 (277)
                      |.++.+|..+.  +++.|++++|+|+.+|..   +++|++|++++|+++  .+|...   .+++.|.+.
T Consensus       294 N~l~~lp~~~~--~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~--~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         294 NKLIELPALPP--RLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLR--EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             SCCSCCCCCCT--TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS--SCCCCC---TTCCEEECC
T ss_pred             CccCccccccC--CCCEEECCCCcCCccccc---cCCCCEEECcCCcCC--CCCccc---cccCeeECc
Confidence            99999986533  588999999999999864   468999999999987  677533   356666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=3.4e-15  Score=126.05  Aligned_cols=231  Identities=19%  Similarity=0.235  Sum_probs=159.6

Q ss_pred             CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcC----ChhHHHh------hccccEEE
Q psy3567          14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEF----PDEMNEL------KAVLRTLD   83 (277)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~------~~~L~~L~   83 (277)
                      ...+++|+|++|.+.......          +...+...+.|+.++++++.....    +..+..+      +++|+.|+
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~----------l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARW----------LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHH----------HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECcCCcCCHHHHHH----------HHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            456778888888765442222          224567788999999998765522    2222111      37899999


Q ss_pred             ccCCCCCc-----CCccccccCCCcEEeccCCcCcc-----cCcc---------ccCcccCceeecccccccc-----cc
Q psy3567          84 ISQNKISK-----FPLDLASYQLLKSLTFDQNKIES-----LPKD---------IGTLEKLENVSGNCNLIKE-----LP  139 (277)
Q Consensus        84 l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~-----~~~~---------~~~l~~L~~L~l~~n~~~~-----l~  139 (277)
                      +++|.+..     +...+...++|++|++++|.+..     +...         ....+.|+.+.++++.+..     +.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            99998874     33345677899999999998752     1111         2356678899998887762     34


Q ss_pred             hhhhcCCCCCEEEccCCCCcc------CccccCCCCCCCEEEccCCCCcc-----cCchhccc-eeeEEEccCCccCc--
Q psy3567         140 LSFSKLHNLKHLSLSQNQLNK------FPTVLFNLQHLDVLDLSFNRIES-----IPDGIGKM-KVIEMNLNKNQICH--  205 (277)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~~------~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~~-~l~~L~l~~n~l~~--  205 (277)
                      ..+...+.++++++++|.+..      +...+..+++|+.|++++|.++.     +...+... .+++|++++|.++.  
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            456778899999999998873      23445678899999999998862     33334444 48999999999882  


Q ss_pred             ---CCcCccC--CCCCCEEEcCCCccccCc---cCcccc-CCCCccEEEcCCCeeeec
Q psy3567         206 ---ISPDISE--CVRLKILRLEENCLAINA---IPTCIL-TSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       206 ---l~~~l~~--~~~L~~L~l~~n~~~~~~---~~~~~~-~~~~L~~l~l~~n~~~~~  254 (277)
                         +...+..  .+.|++|++++|.++...   +...+. +.+.|++|++++|.++.+
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence               3333433  467999999999987322   233343 568899999999999754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.9e-15  Score=122.51  Aligned_cols=191  Identities=14%  Similarity=0.152  Sum_probs=94.8

Q ss_pred             ccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCCCCC-cCCccccccCCCcEEeccCC-cCcc--cCccccCcccC
Q psy3567          51 TAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQN-KIES--LPKDIGTLEKL  125 (277)
Q Consensus        51 ~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~-~i~~--~~~~~~~l~~L  125 (277)
                      ...+|++|+++++.+. .....++..+++|++|++++|++. ..+..+.++++|++|+++++ .++.  +..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3446667777766655 212223333466777777776655 22334556666777777664 4432  12223345666


Q ss_pred             ceeeccccc-cc--ccchhhhc-CCCCCEEEccCCC--Cc--cCccccCCCCCCCEEEccCC-CCc-ccCchhccc-eee
Q psy3567         126 ENVSGNCNL-IK--ELPLSFSK-LHNLKHLSLSQNQ--LN--KFPTVLFNLQHLDVLDLSFN-RIE-SIPDGIGKM-KVI  194 (277)
Q Consensus       126 ~~L~l~~n~-~~--~l~~~~~~-l~~L~~L~l~~n~--l~--~~~~~l~~~~~L~~L~l~~n-~l~-~l~~~~~~~-~l~  194 (277)
                      ++|+++++. +.  .+...+.. .++|+.|+++++.  ++  .+......+++|++|++++| .++ .....+... +++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            777666542 22  12222323 3456666666542  22  12222234566666666665 344 222333333 366


Q ss_pred             EEEccCC-ccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCcc
Q psy3567         195 EMNLNKN-QIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVC  242 (277)
Q Consensus       195 ~L~l~~n-~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  242 (277)
                      +|++++| .++ .-...++++++|+.|+++++ ++++.++.....+|+++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            6666664 344 22233555666666666665 44333333333444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-14  Score=126.01  Aligned_cols=67  Identities=10%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             HhhhccCccCEEEeecCCCCcCC-hhHHH----hhccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFP-DEMNE----LKAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIE  113 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~-~~~~~----~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~  113 (277)
                      ..+..+++|++|++++|.|+... ..+..    ...+|++|++++|+++.     ++..+..++.|++|++++|.+.
T Consensus        49 ~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          49 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            56788999999999999886211 12222    12479999999999873     3455778899999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=1.2e-15  Score=118.79  Aligned_cols=137  Identities=23%  Similarity=0.325  Sum_probs=81.5

Q ss_pred             ccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-e
Q psy3567         114 SLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-K  192 (277)
Q Consensus       114 ~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~  192 (277)
                      .++.++..+++|++|++++|.+..++ .+..+++|++|++++|.+..++.....+++|++|++++|.++.++. +..+ .
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~  116 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVN  116 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccc-cccccc
Confidence            34444555555555555555555553 3555566666666666665554433334456666666666665533 3333 3


Q ss_pred             eeEEEccCCccCcCCc--CccCCCCCCEEEcCCCccccCccCc----------cccCCCCccEEEcCCCeeeecc
Q psy3567         193 VIEMNLNKNQICHISP--DISECVRLKILRLEENCLAINAIPT----------CILTSSNVCTLNVEGNLFEMKA  255 (277)
Q Consensus       193 l~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~~~  255 (277)
                      +++|++++|+++.++.  .+..+++|+.|++++|++. ...+.          .+..+|+|+.||  +.+++.++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~e  188 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY-NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH-HHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTTT
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc-cCcccccchhhHHHHHHHHCCCcCEeC--CccCCHHH
Confidence            7777777777776653  4677888888888888876 22221          155678888864  55565443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-13  Score=112.90  Aligned_cols=220  Identities=15%  Similarity=0.125  Sum_probs=149.8

Q ss_pred             eEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc--CCccc
Q psy3567          19 TLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK--FPLDL   96 (277)
Q Consensus        19 ~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~   96 (277)
                      ++|++++.+.+.....+             +.  .....+.+.+..+.......... .+|++|+++++.+..  +...+
T Consensus         4 ~lDLs~~~l~~~~l~~l-------------~~--~~~~~lrl~~~~~~~~~~~~~~~-~~L~~LdLs~~~i~~~~l~~l~   67 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRL-------------LS--QGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTLHGIL   67 (284)
T ss_dssp             EEECTTCBCCHHHHHHH-------------HH--TTCSEEECTTCEECSCCCSCCCC-BCCCEEECTTCEECHHHHHHHH
T ss_pred             EEECCCCCCCchHHHHH-------------Hh--ccceEeeccccccccchhhhccC-CCCCEEECCCCccCHHHHHHHH
Confidence            68888887654322111             11  13445666555444322222233 689999999998763  34457


Q ss_pred             cccCCCcEEeccCCcCc-ccCccccCcccCceeecccc-cccc--cchhhhcCCCCCEEEccCCC-Cc--cCccccC-CC
Q psy3567          97 ASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCN-LIKE--LPLSFSKLHNLKHLSLSQNQ-LN--KFPTVLF-NL  168 (277)
Q Consensus        97 ~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n-~~~~--l~~~~~~l~~L~~L~l~~n~-l~--~~~~~l~-~~  168 (277)
                      .++++|++|+++++.+. ..+..++.+++|++|+++++ .+..  +......+++|++|+++++. ++  .+...+. ..
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            88999999999999887 34567888999999999875 4442  33335678999999999863 44  2223333 35


Q ss_pred             CCCCEEEccCC--CCc--ccCchhccc-eeeEEEccCCc-cC-cCCcCccCCCCCCEEEcCCC-ccccCccCccccCCCC
Q psy3567         169 QHLDVLDLSFN--RIE--SIPDGIGKM-KVIEMNLNKNQ-IC-HISPDISECVRLKILRLEEN-CLAINAIPTCILTSSN  240 (277)
Q Consensus       169 ~~L~~L~l~~n--~l~--~l~~~~~~~-~l~~L~l~~n~-l~-~l~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~  240 (277)
                      +.|+.|+++++  .++  .+....... ++++|++++|. ++ .....+.++++|++|++++| .++ ......+.++++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~-~~~l~~L~~~~~  226 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLELGEIPT  226 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-GGGGGGGGGCTT
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC-hHHHHHHhcCCC
Confidence            78999999876  344  233333333 49999999865 66 45566888999999999996 576 344456788999


Q ss_pred             ccEEEcCCCeeeeccc
Q psy3567         241 VCTLNVEGNLFEMKAF  256 (277)
Q Consensus       241 L~~l~l~~n~~~~~~~  256 (277)
                      |+.|+++++ ++...+
T Consensus       227 L~~L~l~~~-~~d~~l  241 (284)
T d2astb2         227 LKTLQVFGI-VPDGTL  241 (284)
T ss_dssp             CCEEECTTS-SCTTCH
T ss_pred             CCEEeeeCC-CCHHHH
Confidence            999999997 555433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=3e-14  Score=120.17  Aligned_cols=210  Identities=14%  Similarity=0.172  Sum_probs=150.9

Q ss_pred             hHhhhccCccCEEEeecCCCCc-----CChhHHHhhccccEEEccCCCCCcCC-----------ccccccCCCcEEeccC
Q psy3567          46 KRHFETAKKTGVINLSHQGFKE-----FPDEMNELKAVLRTLDISQNKISKFP-----------LDLASYQLLKSLTFDQ  109 (277)
Q Consensus        46 ~~~l~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~~L~~L~l~~~~i~~~~-----------~~~~~l~~L~~L~l~~  109 (277)
                      ...+.+...++.|++++|.|..     +...+... ++|+.++++++......           ..+...++|+.|++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhC-CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            3678889999999999998862     22222223 88999999988655321           2245678999999999


Q ss_pred             CcCcc-----cCccccCcccCceeecccccccc-----cchh---------hhcCCCCCEEEccCCCCc-----cCcccc
Q psy3567         110 NKIES-----LPKDIGTLEKLENVSGNCNLIKE-----LPLS---------FSKLHNLKHLSLSQNQLN-----KFPTVL  165 (277)
Q Consensus       110 ~~i~~-----~~~~~~~l~~L~~L~l~~n~~~~-----l~~~---------~~~l~~L~~L~l~~n~l~-----~~~~~l  165 (277)
                      |.+..     +...+...++|++|++++|.+..     +...         ....+.|+.+.+++|.+.     .+...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            99874     34456678899999999987652     1111         235678999999999876     233445


Q ss_pred             CCCCCCCEEEccCCCCcc------cCchhccc-eeeEEEccCCccC-----cCCcCccCCCCCCEEEcCCCccccCcc--
Q psy3567         166 FNLQHLDVLDLSFNRIES------IPDGIGKM-KVIEMNLNKNQIC-----HISPDISECVRLKILRLEENCLAINAI--  231 (277)
Q Consensus       166 ~~~~~L~~L~l~~n~l~~------l~~~~~~~-~l~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~~~~~--  231 (277)
                      ...+.++++++++|.++.      +...+... .+++|++++|.++     .+...+..+++|++|++++|.++...+  
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            567899999999999872      12223333 4899999999987     355667889999999999999973222  


Q ss_pred             -CccccC--CCCccEEEcCCCeeeeccc
Q psy3567         232 -PTCILT--SSNVCTLNVEGNLFEMKAF  256 (277)
Q Consensus       232 -~~~~~~--~~~L~~l~l~~n~~~~~~~  256 (277)
                       -..+..  .+.+++|++++|.++.+.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHH
Confidence             122332  4679999999999876443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=2e-14  Score=111.79  Aligned_cols=110  Identities=25%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567          47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE  126 (277)
Q Consensus        47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~  126 (277)
                      ..+..+++|++|++++|+|+.+++ +..+ ++|+.|++++|++..+|..+..++.|++|++++|.++.++ .+..+++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~-l~~l-~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISS-LSGM-ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCC-HHHH-TTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred             hHHhcccccceeECcccCCCCccc-ccCC-ccccChhhcccccccccccccccccccccccccccccccc-ccccccccc
Confidence            456777777777887777777753 5544 7777777777777777655555567777777777777653 356677777


Q ss_pred             eeecccccccccch--hhhcCCCCCEEEccCCCCc
Q psy3567         127 NVSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLN  159 (277)
Q Consensus       127 ~L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~  159 (277)
                      +|++++|.+..++.  .+..+++|+.|++++|.+.
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccc
Confidence            77777777766542  4667777777777777655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=90.86  Aligned_cols=103  Identities=20%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             cEEEccCCCCCcCCccccccCCCcEEeccCC-cCcccC-ccccCcccCceeecccccccccc-hhhhcCCCCCEEEccCC
Q psy3567          80 RTLDISQNKISKFPLDLASYQLLKSLTFDQN-KIESLP-KDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQN  156 (277)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~-~i~~~~-~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n  156 (277)
                      ..++..++.+...|..+..++++++|++.++ .++.++ .+|..+++|+.|++++|.+..++ ..|..+++|++|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3455555555555555556666666666544 366554 35666666777777777666664 34677777777777777


Q ss_pred             CCccCccccCCCCCCCEEEccCCCCc
Q psy3567         157 QLNKFPTVLFNLQHLDVLDLSFNRIE  182 (277)
Q Consensus       157 ~l~~~~~~l~~~~~L~~L~l~~n~l~  182 (277)
                      ++..+|.......+|++|++++|.+.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCcccChhhhccccccccccCCCccc
Confidence            77777666555556777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.4e-11  Score=88.36  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             ccCEEEeecCCCCcCChhHHHhhccccEEEccCC-CCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeec
Q psy3567          54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN-KISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSG  130 (277)
Q Consensus        54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l  130 (277)
                      ....++++++.+.++|..+... ++++.|++.++ .++.++. .|.++++|+.|++++|+|..+ +.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l-~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCc-cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3344555555555555444333 55555555444 3554443 355555555555555555555 234555555555555


Q ss_pred             ccccccccchhhhcCCCCCEEEccCCCC
Q psy3567         131 NCNLIKELPLSFSKLHNLKHLSLSQNQL  158 (277)
Q Consensus       131 ~~n~~~~l~~~~~~l~~L~~L~l~~n~l  158 (277)
                      ++|.+..++.......+|++|++++|.+
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCCcccChhhhccccccccccCCCcc
Confidence            5555555554433333455555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.3e-12  Score=109.84  Aligned_cols=156  Identities=16%  Similarity=0.191  Sum_probs=88.3

Q ss_pred             cCCCcEEeccCCcCcc------cCccccCcccCceeeccccccccc-----chhhhcCCCCCEEEccCCCCcc-----Cc
Q psy3567          99 YQLLKSLTFDQNKIES------LPKDIGTLEKLENVSGNCNLIKEL-----PLSFSKLHNLKHLSLSQNQLNK-----FP  162 (277)
Q Consensus        99 l~~L~~L~l~~~~i~~------~~~~~~~l~~L~~L~l~~n~~~~l-----~~~~~~l~~L~~L~l~~n~l~~-----~~  162 (277)
                      .+.++.+++.++.+..      ..........++.+++++|.+...     ...+...+.++.+++++|.+..     +.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3555666666665431      122234466788888888776532     2234556777778887777651     11


Q ss_pred             cccC-CCCCCCEEEccCCCCccc-----Cchhccc-eeeEEEccCCccC-----cCCcCcc-CCCCCCEEEcCCCccccC
Q psy3567         163 TVLF-NLQHLDVLDLSFNRIESI-----PDGIGKM-KVIEMNLNKNQIC-----HISPDIS-ECVRLKILRLEENCLAIN  229 (277)
Q Consensus       163 ~~l~-~~~~L~~L~l~~n~l~~l-----~~~~~~~-~l~~L~l~~n~l~-----~l~~~l~-~~~~L~~L~l~~n~~~~~  229 (277)
                      ..+. ....|+.+++++|.++..     ....... .+++|++++|+++     .++..+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            1222 234677777777766521     1111111 3777777777765     2333333 345677777777777631


Q ss_pred             ---ccCccccCCCCccEEEcCCCeeeec
Q psy3567         230 ---AIPTCILTSSNVCTLNVEGNLFEMK  254 (277)
Q Consensus       230 ---~~~~~~~~~~~L~~l~l~~n~~~~~  254 (277)
                         .++..+..+++|++|++++|.++.+
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence               2333455567777777777777653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.3e-07  Score=70.11  Aligned_cols=63  Identities=27%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             hhcCCCCCEEEccCCCCccCcc---ccCCCCCCCEEEccCCCCcccCch--hccceeeEEEccCCccC
Q psy3567         142 FSKLHNLKHLSLSQNQLNKFPT---VLFNLQHLDVLDLSFNRIESIPDG--IGKMKVIEMNLNKNQIC  204 (277)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~---~l~~~~~L~~L~l~~n~l~~l~~~--~~~~~l~~L~l~~n~l~  204 (277)
                      +..++.|++|++++|+++.++.   .+..+++|+.|++++|.++.++..  +...+++++++++|.++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3456666666666666665432   233456666666666666554432  11223444555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.8e-08  Score=71.27  Aligned_cols=16  Identities=31%  Similarity=0.360  Sum_probs=6.6

Q ss_pred             cCCCcEEeccCCcCcc
Q psy3567          99 YQLLKSLTFDQNKIES  114 (277)
Q Consensus        99 l~~L~~L~l~~~~i~~  114 (277)
                      +++|+.|++++|.|..
T Consensus        90 l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          90 APNLKILNLSGNELKS  105 (162)
T ss_dssp             STTCCCCCCTTSCCCC
T ss_pred             CCcccccccccCcccc
Confidence            3444444444444433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.08  E-value=1.3e-06  Score=64.82  Aligned_cols=108  Identities=10%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             CCCCCEEEccCC-CCc-----cCccccCCCCCCCEEEccCCCCc-----ccCchhccc-eeeEEEccCCccC-----cCC
Q psy3567         145 LHNLKHLSLSQN-QLN-----KFPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKM-KVIEMNLNKNQIC-----HIS  207 (277)
Q Consensus       145 l~~L~~L~l~~n-~l~-----~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~-~l~~L~l~~n~l~-----~l~  207 (277)
                      .++|++|+++++ .++     .+...+...+.|++|++++|.++     .+...+... .+++|++++|.++     .+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666543 233     12233445566666666666665     122222222 3667777777766     244


Q ss_pred             cCccCCCCCCEEEcCCCcccc------CccCccccCCCCccEEEcCCCeee
Q psy3567         208 PDISECVRLKILRLEENCLAI------NAIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       208 ~~l~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      ..+...++|++|++++|.+..      ..+...+...++|++++++.+...
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence            456777889999998886541      123445566788999999876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.02  E-value=2.1e-06  Score=63.63  Aligned_cols=58  Identities=10%  Similarity=0.143  Sum_probs=26.3

Q ss_pred             ccccEEEccCCCCC-----cCCccccccCCCcEEeccCCcCcc-----cCccccCcccCceeeccccc
Q psy3567          77 AVLRTLDISQNKIS-----KFPLDLASYQLLKSLTFDQNKIES-----LPKDIGTLEKLENVSGNCNL  134 (277)
Q Consensus        77 ~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~n~  134 (277)
                      +.|+.|++++|.+.     .+...+...+.|++|++++|.+..     +..++...+.|++|++++|.
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            44555555555544     112223334455555555555541     22234444445555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.76  E-value=8.6e-06  Score=60.01  Aligned_cols=107  Identities=13%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             hhccCccCEEEeec-CCCC-----cCChhHHHhhccccEEEccCCCCC-----cCCccccccCCCcEEeccCCcCc----
Q psy3567          49 FETAKKTGVINLSH-QGFK-----EFPDEMNELKAVLRTLDISQNKIS-----KFPLDLASYQLLKSLTFDQNKIE----  113 (277)
Q Consensus        49 l~~~~~L~~L~l~~-~~i~-----~~~~~~~~~~~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~i~----  113 (277)
                      ..+.+.|++|++++ +.++     .+...+.. .++|++|++++|.++     .+...+...+.++.++++++.+.    
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~-n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc-CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            34556666676665 3344     11111112 255666666666654     12233444556666666666554    


Q ss_pred             -ccCccccCcccCceeec--ccccccc-----cchhhhcCCCCCEEEccCC
Q psy3567         114 -SLPKDIGTLEKLENVSG--NCNLIKE-----LPLSFSKLHNLKHLSLSQN  156 (277)
Q Consensus       114 -~~~~~~~~l~~L~~L~l--~~n~~~~-----l~~~~~~l~~L~~L~l~~n  156 (277)
                       .+...+...++|+.+++  ..|.+..     +...+...++|+.|++..+
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             12334444555554333  2333331     2333444455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.57  E-value=2.3e-05  Score=57.56  Aligned_cols=109  Identities=12%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             cCCCCCEEEccC-CCCc-----cCccccCCCCCCCEEEccCCCCc-----ccCchhccc-eeeEEEccCCccC-----cC
Q psy3567         144 KLHNLKHLSLSQ-NQLN-----KFPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKM-KVIEMNLNKNQIC-----HI  206 (277)
Q Consensus       144 ~l~~L~~L~l~~-n~l~-----~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~-~l~~L~l~~n~l~-----~l  206 (277)
                      ..++|++|++++ +.++     .+...+...+.|++|++++|.++     .+...+... .++.+++++|.++     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            334555555554 2333     12233344555666666665554     111222212 3556666666655     34


Q ss_pred             CcCccCCCCCCEEEc--CCCccccC---ccCccccCCCCccEEEcCCCeee
Q psy3567         207 SPDISECVRLKILRL--EENCLAIN---AIPTCILTSSNVCTLNVEGNLFE  252 (277)
Q Consensus       207 ~~~l~~~~~L~~L~l--~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~~~  252 (277)
                      ...+...++|+.++|  ++|.++..   .+...+..++.|++|+++.+...
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            455667778876555  45566521   23444566788888888776544