Psyllid ID: psy3641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MVTQNVHYLDSPLALPSEPPPVLENVANHQSQTQNQAQLLPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvtqnvhyldsplalpsepppvlenvanhqsQTQNQAQllpekkmlnredpmshRIIEKRRRDRMNNCLAdlsrlipadylkkgrgrieKTEIIEMAIKHMKYLHSVVctrtpnanpsnelplensqmldnydqdskvsgkeetsehnpskptensssiteldpnkpegegspapinlehfKLGYQECLSESMHYLVEVKGY
Flexible Loop (DISEMBL)
mvtqnvhyldsplalpsEPPPVLENVANHQSQtqnqaqllpekkmlnredpmshriiekrrrdrMNNCladlsrlipadylkkgrgriEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGkeetsehnpskptensssiteldpNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY
Low Complexity Region (SEG)
MVTQNVHYLDSPLALPSEPPPVLENVANHQSQTQNQAQLLPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY
Disordered region (IsUnstruct)
*****************************************************************NNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR*****************************************************************NLEHFKLGYQECLSESMHYLVE****
Disordered Region (DISOPRED)
************************************************************RRDRMNNCLADLSRLI***************EIIEMAIKHMKY**************************************************************************************SESMHYLVEV***
Disordered Region (DISEMBL)
MVTQNVHYLDSPLALPSEPPPVLENVANHQSQTQNQAQLLPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYD*************************************GSPAPINLEHFKLGYQECLSESMHYLVEVKGY
Disordered Region (DISPRO)
************LA*PSE*********************************MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTP*********************************************************GSPAPINLEHFKLGYQECLSESMHYLVEVKGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTQNVHYLDSPLALPSEPPPVLENVANHQSQTQNQAQLLPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q7TS99	240	Hairy and enhancer of spl	yes	N/A	0.316	0.266	0.437	1e-11
Q6QB00	270	Hairy and enhancer of spl	yes	N/A	0.346	0.259	0.4	1e-11
Q2KIN4	304	Hairy/enhancer-of-split r	no	N/A	0.257	0.171	0.519	3e-11
Q9TSZ2	304	Hairy/enhancer-of-split r	yes	N/A	0.257	0.171	0.519	3e-11
Q9Y5J3	304	Hairy/enhancer-of-split r	yes	N/A	0.257	0.171	0.519	3e-11
Q8AXV6	317	Hairy/enhancer-of-split r	no	N/A	0.257	0.164	0.519	3e-11
Q66KK8	300	Hairy/enhancer-of-split r	no	N/A	0.257	0.173	0.519	4e-11
Q9I8A3	294	Hairy/enhancer-of-split r	N/A	N/A	0.257	0.176	0.519	4e-11
Q9WV93	299	Hairy/enhancer-of-split r	no	N/A	0.257	0.173	0.519	5e-11
Q9NQ87	328	Hairy/enhancer-of-split r	no	N/A	0.282	0.173	0.482	1e-10

>sp|Q7TS99|HELT_MOUSE Hairy and enhancer of split-related protein HELT OS=Mus musculus GN=Helt PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 48  REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           +  P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM +++++ LHS 
Sbjct: 9   KRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRALHSA 68

Query: 108 VCTR 111
              R
Sbjct: 69  DFPR 72

Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGCG-3'. Required for the development of GABAergic neurons.
Mus musculus (taxid: 10090)

>sp|Q6QB00|HELT_DANRE Hairy and enhancer of split-related protein helt OS=Danio rerio GN=helt PE=2 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 49/70 (70%)

Query: 38  QLLPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMA 97
           +++  K    ++ P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM 
Sbjct: 48  EMMASKMKDRKKTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQNSGKLEKAEILEMT 107

Query: 98  IKHMKYLHSV 107
           +++++ LHS 
Sbjct: 108 VQYLRALHSA 117

Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGCG-3'.

Danio rerio (taxid: 7955)

>sp|Q2KIN4|HEY1_BOVIN Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Bos taurus GN=HEY1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 56  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTA 107

Downstream effector of Notch signaling which may be required for cardiovascular development (By similarity). Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3' (By similarity). Represses transcription by the cardiac transcriptional activators GATA4 and GATA6.

Bos taurus (taxid: 9913)

>sp|Q9TSZ2|HEY1_CANFA Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Canis familiaris GN=HEY1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 56  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTA 107

Downstream effector of Notch signaling which may be required for cardiovascular development (By similarity). Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3' (By similarity). Represses transcription by the cardiac transcriptional activators GATA4 and GATA6.

Canis familiaris (taxid: 9615)

>sp|Q9Y5J3|HEY1_HUMAN Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Homo sapiens GN=HEY1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 56  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTA 107

Downstream effector of Notch signaling which may be required for cardiovascular development. Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3'. Represses transcription by the cardiac transcriptional activators GATA4 and GATA6.

Homo sapiens (taxid: 9606)

>sp|Q8AXV6|HEY1_DANRE Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Danio rerio GN=hey1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 55  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHAA 106

Transcriptional repressor which functions as a downstream effector of Notch signaling.

Danio rerio (taxid: 7955)

>sp|Q66KK8|HEY1_XENTR Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Xenopus tropicalis GN=hey1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 55  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTA 106

Downstream effector of Notch signaling. Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3'. Acts as a suppressor of neurogenesis by antagonizing proneural gene function. Functions during floorplate development. Plays a role in pronephros formation in the inhibition of distal tubule and duct cell fates and the promotion of glomus and proximal tubule formation.

Xenopus tropicalis (taxid: 8364)

>sp|Q9I8A3|HEY1_XENLA Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Xenopus laevis GN=hey1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 51  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTA 102

Downstream effector of Notch signaling. Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3'. Acts as a suppressor of neurogenesis by antagonizing proneural gene function. Functions during floorplate development. Plays a role in pronephros formation in the inhibition of distal tubule and duct cell fates and the promotion of glomus and proximal tubule formation.

Xenopus laevis (taxid: 8355)

>sp|Q9WV93|HEY1_MOUSE Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Mus musculus GN=Hey1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 56  IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
           IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+ 
Sbjct: 56  IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTA 107

Downstream effector of Notch signaling required for cardiovascular development. Specifically required for the Notch-induced endocardial epithelial to mesenchymal transition, which is itself criticial for cardiac valve and septum development. May be required in conjunction with HEY2 to specify arterial cell fate or identity. Promotes maintenance of neuronal precursor cells and glial versus neuronal fate specification. Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3'. Represses transcription by the cardiac transcriptional activators GATA4 and GATA6 and by the neuronal bHLH factors ASCL1/MASH1 and NEUROD4/MATH3.

Mus musculus (taxid: 10090)

>sp|Q9NQ87|HEYL_HUMAN Hairy/enhancer-of-split related with YRPW motif-like protein OS=Homo sapiens GN=HEYL PE=2 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 54  HR-IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110
           HR IIEKRRRDR+N+ L++L RL+P  + K+G  ++EK E+++M + H+K LH+   T
Sbjct: 47  HRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLKMLHATGGT 104

Downstream effector of Notch signaling which may be required for cardiovascular development (By similarity). Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGTG-3' (By similarity). Represses transcription by the cardiac transcriptional activators GATA4 and GATA6.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
345492563	491	PREDICTED: hypothetical protein LOC10067	0.613	0.252	0.521	1e-34
328714587	388	PREDICTED: hypothetical protein LOC10057	0.727	0.378	0.467	1e-33
345492561	463	PREDICTED: hypothetical protein LOC10067	0.618	0.269	0.515	4e-33
332022503	383	Hairy/enhancer-of-split related with YRP	0.608	0.321	0.487	9e-33
110761895	400	PREDICTED: hypothetical protein LOC72620	0.608	0.307	0.487	2e-32
350418608	397	PREDICTED: hypothetical protein LOC10074	0.603	0.307	0.481	4e-32
380027321	374	PREDICTED: uncharacterized protein LOC10	0.688	0.371	0.463	5e-32
340722597	397	PREDICTED: hypothetical protein LOC10065	0.603	0.307	0.481	5e-32
383849130	397	PREDICTED: uncharacterized protein LOC10	0.603	0.307	0.487	9e-32
350418611	371	PREDICTED: hypothetical protein LOC10074	0.702	0.382	0.436	2e-31

>gi|345492563|ref|XP_003426878.1| PREDICTED: hypothetical protein LOC100679013 isoform 2 [Nasonia vitripennis]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 100/161 (62%), Gaps = 37/161 (22%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           KK ++R+DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+HMK
Sbjct: 60  KKKVSRQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRHMK 119

Query: 103 YLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITEL 162
           +L  +                          QDSK         H P        +   +
Sbjct: 120 HLQGL-------------------------RQDSK--------HHTPVSSVHAMHTEDSV 146

Query: 163 DP-NKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
           D  + P   GS A    EH++LGYQECLSE+MH+LVEV+GY
Sbjct: 147 DSVSHPSTTGSSAA---EHYRLGYQECLSETMHFLVEVEGY 184

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714587|ref|XP_003245398.1| PREDICTED: hypothetical protein LOC100570459 [Acyrthosiphon pisum]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 110/184 (59%), Gaps = 37/184 (20%)

Query: 23  LENVANHQSQTQNQAQLLP----EKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPA 78
           +E   N + +TQ  A+       + K +++EDPMSHRIIEKRRRDRMNNCLADLSRLIPA
Sbjct: 35  VEQCENLEGETQQHAERTGPHRNQTKNVSKEDPMSHRIIEKRRRDRMNNCLADLSRLIPA 94

Query: 79  DYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKV 138
           +Y+KKGRGR+EKTEIIEMAIKHMKYL S V +   N  P                     
Sbjct: 95  EYMKKGRGRVEKTEIIEMAIKHMKYLQSNVSSSVGNETPP-------------------- 134

Query: 139 SGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVE 198
               E SE   ++ +ENS+      P +PE     + +  E +K+G+ ECL+E+M YLVE
Sbjct: 135 ---REPSEPVKAEKSENST------PEQPEN----SILMAEQYKMGFLECLTETMQYLVE 181

Query: 199 VKGY 202
             GY
Sbjct: 182 AHGY 185

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492561|ref|XP_003426877.1| PREDICTED: hypothetical protein LOC100679013 isoform 1 [Nasonia vitripennis]

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 100/163 (61%), Gaps = 38/163 (23%)

Query: 42  EKKMLNRE-DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKH 100
           +K+ L +E DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+H
Sbjct: 30  KKRCLAKEQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRH 89

Query: 101 MKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSIT 160
           MK+L  +                          QDSK         H P        +  
Sbjct: 90  MKHLQGL-------------------------RQDSK--------HHTPVSSVHAMHTED 116

Query: 161 ELDP-NKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
            +D  + P   GS A    EH++LGYQECLSE+MH+LVEV+GY
Sbjct: 117 SVDSVSHPSTTGSSA---AEHYRLGYQECLSETMHFLVEVEGY 156

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022503|gb|EGI62806.1| Hairy/enhancer-of-split related with YRPW motif protein 1 [Acromyrmex echinatior]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 39/162 (24%)

Query: 42  EKKMLNRE-DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKH 100
           +++ LN+E DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+H
Sbjct: 32  KRRCLNKEQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRH 91

Query: 101 MKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSIT 160
           MK+L  +                          QD+K S       H    P ++  S++
Sbjct: 92  MKHLQGL-------------------------RQDTKHSSVTTVHTH----PEDSVDSVS 122

Query: 161 ELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
                      + A    EH+KLG+QECLSE+MH+L+EV+G+
Sbjct: 123 H---------STAASTAAEHYKLGFQECLSETMHFLIEVEGF 155

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761895|ref|XP_001121958.1| PREDICTED: hypothetical protein LOC726204 [Apis mellifera]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 97/160 (60%), Gaps = 37/160 (23%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           KK ++R+DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+HMK
Sbjct: 60  KKKVSRQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRHMK 119

Query: 103 YLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITEL 162
           +L  +                          Q+SK          +P    ++ S  T  
Sbjct: 120 HLQGL-------------------------RQESKHPAVTSVHSMHPEDSVDSVSHSTV- 153

Query: 163 DPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
                      A    EH++LG+QECLSE+MH+LVEV+G+
Sbjct: 154 -----------ASTAAEHYRLGFQECLSETMHFLVEVEGF 182

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418608|ref|XP_003491913.1| PREDICTED: hypothetical protein LOC100743562 isoform 1 [Bombus impatiens]

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 38/160 (23%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           KK ++R+DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+HMK
Sbjct: 60  KKKVSRQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRHMK 119

Query: 103 YLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITEL 162
           +L  +                          Q+SK         H    P ++  S++  
Sbjct: 120 HLQGL-------------------------RQESKHPAVTSVHTH----PEDSVDSVSH- 149

Query: 163 DPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
                    + A    EH++LG+QECLSE++H+LVEV+G+
Sbjct: 150 --------STVASTAAEHYRLGFQECLSETVHFLVEVEGF 181

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027321|ref|XP_003697376.1| PREDICTED: uncharacterized protein LOC100868475 [Apis florea]

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 103/177 (58%), Gaps = 38/177 (21%)

Query: 27  ANHQSQTQNQAQLLPEKKMLNRE-DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGR 85
            N Q     Q+  L +++ LN+E DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGR
Sbjct: 17  TNSQVDAVPQSSPLRKRRCLNKEQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGR 76

Query: 86  GRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETS 145
           GR+EKTEIIEMAI+HMK+L  +                          Q+SK        
Sbjct: 77  GRVEKTEIIEMAIRHMKHLQGL-------------------------RQESKHPAVTSVH 111

Query: 146 EHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
             +P    ++ S  T             A    EH++LG+QECLSE+MH+LVEV+G+
Sbjct: 112 GMHPEDSVDSVSHSTV------------ASTAAEHYRLGFQECLSETMHFLVEVEGF 156

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722597|ref|XP_003399690.1| PREDICTED: hypothetical protein LOC100652291 [Bombus terrestris]

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 38/160 (23%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           KK ++R+DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+HMK
Sbjct: 60  KKKVSRQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRHMK 119

Query: 103 YLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITEL 162
           +L  +                          Q+SK         H    P ++  S++  
Sbjct: 120 HLQGL-------------------------RQESKHPAVTSVHTH----PEDSVDSVSH- 149

Query: 163 DPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
                    + A    EH++LG+QECLSE++H+LVEV+G+
Sbjct: 150 --------STIASTAAEHYRLGFQECLSETVHFLVEVEGF 181

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849130|ref|XP_003700199.1| PREDICTED: uncharacterized protein LOC100878396 isoform 1 [Megachile rotundata]

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 38/160 (23%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           KK ++R+DPMSHRIIEKRRRDRMNNCLADLSRLIPA+YLKKGRGR+EKTEIIEMAI+HMK
Sbjct: 60  KKKVSRQDPMSHRIIEKRRRDRMNNCLADLSRLIPAEYLKKGRGRVEKTEIIEMAIRHMK 119

Query: 103 YLHSVVCTRTPNANPSNELPLENSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITEL 162
           +L  +   R  + +P+                 + V    E S  + S  T  S++    
Sbjct: 120 HLQGL---RQESKHPAV----------------TTVHTHPEDSVDSVSHSTVTSTA---- 156

Query: 163 DPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202
                           +H++LG+QECLSE+MH+LVEV+G+
Sbjct: 157 ---------------ADHYRLGFQECLSETMHFLVEVEGF 181

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418611|ref|XP_003491914.1| PREDICTED: hypothetical protein LOC100743562 isoform 2 [Bombus impatiens]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 110/188 (58%), Gaps = 46/188 (24%)

Query: 23  LENVANHQSQTQN-------QAQLLPEKKMLNRE-DPMSHRIIEKRRRDRMNNCLADLSR 74
           ++N+ N Q  T N        +  L +++ +N+E DPMSHRIIEKRRRDRMNNCLADLSR
Sbjct: 6   MDNILNMQYYTANSHVDAVAHSPPLRKRRCMNKEQDPMSHRIIEKRRRDRMNNCLADLSR 65

Query: 75  LIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNYDQ 134
           LIPA+YLKKGRGR+EKTEIIEMAI+HMK+L  +                          Q
Sbjct: 66  LIPAEYLKKGRGRVEKTEIIEMAIRHMKHLQGL-------------------------RQ 100

Query: 135 DSKVSGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMH 194
           +SK         H    P ++  S++           + A    EH++LG+QECLSE++H
Sbjct: 101 ESKHPAVTSVHTH----PEDSVDSVSH---------STVASTAAEHYRLGFQECLSETVH 147

Query: 195 YLVEVKGY 202
           +LVEV+G+
Sbjct: 148 FLVEVEGF 155

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
FB|FBgn0259938	698	cwo "clockwork orange" [Drosop	0.297	0.085	0.8	2.8e-23
ZFIN|ZDB-GENE-040824-6	270	helt "hey-like transcription f	0.341	0.255	0.405	1.9e-17
UNIPROTKB|E1BP66	242	LOC527932 "Uncharacterized pro	0.331	0.276	0.417	2.9e-17
UNIPROTKB|B7ZMI7	242	HELT "HELT protein" [Homo sapi	0.331	0.276	0.417	2.9e-17
UNIPROTKB|J9P200	241	HELT "Uncharacterized protein"	0.292	0.244	0.457	4.8e-17
MGI|MGI:3040955	240	Helt "helt bHLH transcription	0.292	0.245	0.457	4.8e-17
RGD|1564073	240	Helt "helt bHLH transcription	0.292	0.245	0.457	4.8e-17
UNIPROTKB|E5RHK6	186	HEY1 "Hairy/enhancer-of-split-	0.252	0.274	0.529	1.1e-15
UNIPROTKB|F1NDT2	274	HEY1 "Uncharacterized protein"	0.252	0.186	0.529	3.6e-15
UNIPROTKB|J9P9B3	149	HEY2 "Uncharacterized protein"	0.252	0.342	0.509	4.5e-15

FB|FBgn0259938 cwo "clockwork orange" [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
 Identities = 48/60 (80%), Positives = 56/60 (93%)

Query:    47 NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             +R+DP+SHRIIEKRRRDRMN+CLADLSRLIP  Y +KGRGRIEKTEIIEMAI+H+K+L S
Sbjct:    60 SRQDPLSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQS 119

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0032922 "circadian regulation of gene expression" evidence=IMP

ZFIN|ZDB-GENE-040824-6 helt "hey-like transcription factor" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 28/69 (40%), Positives = 49/69 (71%)

Query:    38 QLLPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMA 97
             +++  K    ++ P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM 
Sbjct:    48 EMMASKMKDRKKTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQNSGKLEKAEILEMT 107

Query:    98 IKHMKYLHS 106
             +++++ LHS
Sbjct:   108 VQYLRALHS 116

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1BP66 LOC527932 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 28/67 (41%), Positives = 47/67 (70%)

Query:    40 LPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIK 99
             + +K    +  P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM ++
Sbjct:     1 MSDKLKERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQ 60

Query:   100 HMKYLHS 106
             +++ LHS
Sbjct:    61 YLRALHS 67

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0021858 "GABAergic neuron differentiation in basal ganglia" evidence=IEA

GO:0010259 "multicellular organismal aging" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001967 "suckling behavior" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|B7ZMI7 HELT "HELT protein" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 28/67 (41%), Positives = 47/67 (70%)

Query:    40 LPEKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIK 99
             + +K    +  P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM ++
Sbjct:     1 MSDKLKERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQ 60

Query:   100 HMKYLHS 106
             +++ LHS
Sbjct:    61 YLRALHS 67

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|J9P200 HELT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 27/59 (45%), Positives = 44/59 (74%)

Query:    48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             +  P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM +++++ LHS
Sbjct:     9 KRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRALHS 67

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:3040955 Helt "helt bHLH transcription factor" [Mus musculus (taxid:10090)]

 Score = 166 (63.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 27/59 (45%), Positives = 44/59 (74%)

Query:    48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             +  P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM +++++ LHS
Sbjct:     9 KRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRALHS 67

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001967 "suckling behavior" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0010259 "multicellular organismal aging" evidence=IMP

GO:0010467 "gene expression" evidence=IMP

GO:0021858 "GABAergic neuron differentiation in basal ganglia" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IGI

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IEA

RGD|1564073 Helt "helt bHLH transcription factor" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 27/59 (45%), Positives = 44/59 (74%)

Query:    48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             +  P+SH++IEKRRRDR+N CL +L + +P    K+  G++EK EI+EM +++++ LHS
Sbjct:     9 KRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRALHS 67

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001967 "suckling behavior" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0010259 "multicellular organismal aging" evidence=IEA;ISO

GO:0010467 "gene expression" evidence=ISO

GO:0021858 "GABAergic neuron differentiation in basal ganglia" evidence=IEA;ISO

GO:0030182 "neuron differentiation" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

UNIPROTKB|E5RHK6 HEY1 "Hairy/enhancer-of-split-related with YRPW motif protein 1" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 27/51 (52%), Positives = 41/51 (80%)

Query:    56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+
Sbjct:    18 IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHT 68

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1NDT2 HEY1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 27/51 (52%), Positives = 41/51 (80%)

Query:    56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             IIEKRRRDR+NN L++L RL+P+ + K+G  ++EK EI++M + H+K LH+
Sbjct:    26 IIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHT 76

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000988 "protein binding transcription factor activity" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0002076 "osteoblast development" evidence=IEA

GO:0003198 "epithelial to mesenchymal transition involved in endocardial cushion formation" evidence=IEA

GO:0003199 "endocardial cushion to mesenchymal transition involved in heart valve formation" evidence=IEA

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0009948 "anterior/posterior axis specification" evidence=IEA

GO:0035939 "microsatellite binding" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IEA

GO:0060840 "artery development" evidence=IEA

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IEA

GO:2000820 "negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation" evidence=IEA

UNIPROTKB|J9P9B3 HEY2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query:    56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
             IIEKRRRDR+NN L++L RL+P  + K+G  ++EK EI++M + H+K L +
Sbjct:    30 IIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLKMLQA 80

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-12
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-11
smart00353	53	smart00353, HLH, helix loop helix domain	2e-07

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 58.6 bits (143), Expect = 3e-12
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105
            +H   E+RRRDR+N+   +L  L+P    KK    + K EI+ +AI+++K+L 
Sbjct: 3   KAHNERERRRRDRINDAFEELRELLPTPPNKK----LSKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 55.7 bits (135), Expect = 5e-11
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H + E+RRR+R+N+   +L  L+P     K   ++ K EI+  A+ ++K L  ++
Sbjct: 6   EAHNLRERRRRERINDAFDELRSLLPTLPPSK---KLSKAEILRKAVDYIKSLQELL 59

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 55  RIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
              E+RRR ++N    +L  L+P     K   ++ K EI+ +AI+++K L   +
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNK---KLSKAEILRLAIEYIKSLQEEL 51

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG4304|consensus	250		99.96
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.49
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.42
KOG1318|consensus	411		99.37
smart00353	53	HLH helix loop helix domain.	99.34
KOG1319|consensus	229		98.99
KOG3561|consensus	803		98.94
PF07527	43	Hairy_orange: Hairy Orange; InterPro: IPR003650 Th	98.74
smart00511	45	ORANGE Orange domain. This domain confers specific	98.56
KOG2588|consensus	953		98.3
KOG2483|consensus	232		97.75
KOG0561|consensus	373		97.56
KOG3560|consensus	712		97.41
KOG4029|consensus	228		97.36
KOG3960|consensus	284		97.34
PLN03217	93	transcription factor ATBS1; Provisional	96.73
KOG3910|consensus	632		95.04
KOG3558|consensus	768		94.22
KOG4395|consensus	285		90.95
KOG3559|consensus	598		88.97

>KOG4304|consensus

Probab=99.96  E-value=5.9e-30  Score=224.24  Aligned_cols=99  Identities=30%  Similarity=0.655  Sum_probs=85.3

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccC--CCCCcHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCcccc
Q psy3641          47 NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKG--RGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLE  124 (202)
Q Consensus        47 ~r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~--~~KleKA~ILe~TV~ylk~Lq~~~~~~~~~~~~~~~~a~q  124 (202)
                      .-.||++|+++|||||||||+||++||+||++++.+++  ..|||||+|||+||+|||.|+........           
T Consensus        29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~-----------   97 (250)
T KOG4304|consen   29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQ-----------   97 (250)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccc-----------
Confidence            34689999999999999999999999999999998874  59999999999999999999988633210           


Q ss_pred             cccccccccccccccCccccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhhhhcCCCC
Q psy3641         125 NSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY  202 (202)
Q Consensus       125 ~~q~l~~~~~d~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~y~~Gf~eC~~Ev~rfL~~~~G~  202 (202)
                                +                                    .++....+.|++||.+|+.||+|||+.|||+
T Consensus        98 ----------~------------------------------------~~~~~~~d~f~~Gf~ec~~EVsr~ls~~~~~  129 (250)
T KOG4304|consen   98 ----------A------------------------------------APAALPVDSFRAGFRECAAEVSRYLSICPGM  129 (250)
T ss_pred             ----------c------------------------------------ccccccchhhhccHHHHHHHHHHHHhhCCCC
Confidence                      0                                    0234678999999999999999999999996

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.49  E-value=1.7e-14  Score=98.32  Aligned_cols=54  Identities=33%  Similarity=0.597  Sum_probs=47.8

Q ss_pred             CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhH
Q psy3641          51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH  105 (202)
Q Consensus        51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq  105 (202)
                      +..|+..||+||++||.+|++|+.+||.+. .....|++|++||+.||+||+.||
T Consensus         2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~-~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    2 RQKHNERERRRRDRINDCFDELRELLPSCS-AGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSHH-CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccchh-ccccccCCHHHHHHHHHHHHHHhC
Confidence            346999999999999999999999999863 123689999999999999999986

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.42  E-value=1.9e-13  Score=93.18  Aligned_cols=56  Identities=29%  Similarity=0.536  Sum_probs=50.4

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      ++..|+..||+||++||.+|++|+.+||...   ...|++|++||++||+||+.|+...
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~---~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLP---PSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3567999999999999999999999999754   2589999999999999999999864

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>KOG1318|consensus

Probab=99.37  E-value=1.8e-13  Score=127.54  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=58.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccCCCCCC
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNAN  116 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~~~~~~  116 (202)
                      |.||.+|++||||||+.||++|.+|..|||.|..  ...|+.|+.||..+|+||+.|++...+..+.++
T Consensus       231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~--~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~  297 (411)
T KOG1318|consen  231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNS--EDMKSNKGTILKASCDYIRELQQTLQRARELEN  297 (411)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCc--chhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3568899999999999999999999999999876  378999999999999999999998775433333

>smart00353 HLH helix loop helix domain

Probab=99.34  E-value=2.4e-12  Score=86.32  Aligned_cols=51  Identities=29%  Similarity=0.528  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          55 RIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        55 ~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      +..||+||++||.+|.+|+.|||.+.   ...|++|++||.+||+||+.|+...
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~---~~~k~~k~~iL~~ai~yi~~L~~~~   51 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLP---NNKKLSKAEILRLAIEYIKSLQEEL   51 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999764   3689999999999999999999875

>KOG1319|consensus

Probab=98.99  E-value=2.2e-10  Score=98.01  Aligned_cols=63  Identities=22%  Similarity=0.390  Sum_probs=56.6

Q ss_pred             CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccC-CCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641          49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKG-RGRIEKTEIIEMAIKHMKYLHSVVCTR  111 (202)
Q Consensus        49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~-~~KleKA~ILe~TV~ylk~Lq~~~~~~  111 (202)
                      .||..|...|++||+-||..++.|+.|||.|...+. ..|+.||-||..||+||.+|+++..+.
T Consensus        61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kq  124 (229)
T KOG1319|consen   61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQ  124 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999988764 459999999999999999999988764

>KOG3561|consensus

Probab=98.94  E-value=8.2e-10  Score=110.16  Aligned_cols=55  Identities=29%  Similarity=0.537  Sum_probs=50.9

Q ss_pred             CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHh
Q psy3641          51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV  107 (202)
Q Consensus        51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~  107 (202)
                      +.+|+.+||||||++|..|.||.+|||.|..  ...|+||.+||++||+|||.++..
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~--~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNAS--LSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchh--cccCchHHHHHHHHHHHHHHHhhh
Confidence            4579999999999999999999999999875  469999999999999999999886

>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family

Probab=98.74  E-value=6.5e-09  Score=68.56  Aligned_cols=24  Identities=38%  Similarity=0.884  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCC
Q psy3641         179 EHFKLGYQECLSESMHYLVEVKGY  202 (202)
Q Consensus       179 ~~y~~Gf~eC~~Ev~rfL~~~~G~  202 (202)
                      ++|++||++|+.||+|||+.++|+
T Consensus         1 ~~y~~Gy~~C~~Ev~~fL~~~~~~   24 (43)
T PF07527_consen    1 QKYRAGYSECLNEVSRFLSSVEGV   24 (43)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTS--
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCC
Confidence            589999999999999999999985

HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.

>smart00511 ORANGE Orange domain

Probab=98.56  E-value=4e-08  Score=65.11  Aligned_cols=24  Identities=33%  Similarity=0.775  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCC
Q psy3641         179 EHFKLGYQECLSESMHYLVEVKGY  202 (202)
Q Consensus       179 ~~y~~Gf~eC~~Ev~rfL~~~~G~  202 (202)
                      ++|++||.+|+.||++||+.++|+
T Consensus         1 ~~y~~Gy~~C~~Ev~~fLs~~~~~   24 (45)
T smart00511        1 SSFRSGYRECANEVSRFLSQLPGT   24 (45)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCC
Confidence            479999999999999999999884

This domain confers specificity among members of the Hairy/E(SPL) family.

>KOG2588|consensus

Probab=98.30  E-value=9e-07  Score=89.58  Aligned_cols=104  Identities=27%  Similarity=0.396  Sum_probs=73.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC--ccccc
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNE--LPLEN  125 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~~~~~~~~~~--~a~q~  125 (202)
                      .++|++|++||||-|--||+.|.|||.+||..     ..|+.|..+|..|++||++++........ .+.+.+  -+++.
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-----~aKl~kSavLr~ai~~i~dl~~~nq~lk~-~~~~l~t~k~~k~  347 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-----EAKLNKSAVLRKAIDYIEDLQGYNQKLKL-ENASLRTPKALKY  347 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-----HhhhhhhhhHHHHHHHHHHhhccccccch-hhhhhhhHHHHhh
Confidence            37899999999999999999999999999963     68999999999999999999998776532 222223  23344


Q ss_pred             ccccccccccccccCccc--------cCCC--CCCCCCCCCC
Q psy3641         126 SQMLDNYDQDSKVSGKEE--------TSEH--NPSKPTENSS  157 (202)
Q Consensus       126 ~q~l~~~~~d~~~~g~~~--------~~~~--~p~~~~~~~~  157 (202)
                      .-.+...+.-..++|...        ...+  .|+||...++
T Consensus       348 ~~~lk~~~~~~~~~~~~~~~~~s~r~s~~~~~~pSpP~SD~s  389 (953)
T KOG2588|consen  348 IRLLKAKDISLKLSLNDQLKEESVRSSFTNDGEPSPPPSDSS  389 (953)
T ss_pred             hcchhhhhhhhcCcchhhHHhhhhhhhcccCCCCCCCccccC
Confidence            444443332223333322        1223  6777776666

>KOG2483|consensus

Probab=97.75  E-value=4.4e-05  Score=67.13  Aligned_cols=59  Identities=24%  Similarity=0.423  Sum_probs=48.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhc
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVC  109 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~  109 (202)
                      ...+..|+..||+|||.|-.||..|+.+||....   ..+-.-+.||..|+.||+.|+....
T Consensus        57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~---~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNG---ETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCC---cchhhhhHhhhhHHHHHHHHHhHHH
Confidence            3456789999999999999999999999996432   2233379999999999999987754

>KOG0561|consensus

Probab=97.56  E-value=8.2e-05  Score=68.07  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=47.0

Q ss_pred             cchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          54 HRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        54 h~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      -+-.||||---||..|..|++|||...    ..||+||-||+.|.+||-.|.++...
T Consensus        64 ANsNERRRMQSINAGFqsLr~LlPr~e----GEKLSKAAILQQTa~yI~~Le~~Kt~  116 (373)
T KOG0561|consen   64 ANSNERRRMQSINAGFQSLRALLPRKE----GEKLSKAAILQQTADYIHQLEGHKTE  116 (373)
T ss_pred             hcchHHHHHHhhhHHHHHHHHhcCccc----chhhHHHHHHHHHHHHHHHHHhcccc
Confidence            456799999999999999999999743    68999999999999999999887644

>KOG3560|consensus

Probab=97.41  E-value=0.0001  Score=71.74  Aligned_cols=48  Identities=23%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             cchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q psy3641          54 HRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKY  103 (202)
Q Consensus        54 h~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~  103 (202)
                      ++-=-||-|||+|..|+-|.+|+|=  ..+..+||||.+||+++|.||+.
T Consensus        29 kSNPSKRHRdRLNaELD~lAsLLPf--pqdiisKLDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   29 KSNPSKRHRDRLNAELDHLASLLPF--PQDIISKLDKLSVLRLSVSYLRV   76 (712)
T ss_pred             cCCcchhHHHHhhhHHHHHHHhcCC--CHHHHhhhhhhhhhhhhHHHHHH
Confidence            3444588999999999999999984  33457999999999999999985

>KOG4029|consensus

Probab=97.36  E-value=0.00012  Score=63.02  Aligned_cols=59  Identities=22%  Similarity=0.454  Sum_probs=50.6

Q ss_pred             CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641          51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR  111 (202)
Q Consensus        51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~  111 (202)
                      +...+..||.|=.-+|.++.+|+.+||.....  ..|++|.++|..||.||+.|+......
T Consensus       110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~--~kklSKveTLr~A~~YI~~L~~lL~~~  168 (228)
T KOG4029|consen  110 RQARNARERQRVQSVNSAFAELRALLPTEPPQ--SKKLSKVETLRLATSYIRYLTKLLATQ  168 (228)
T ss_pred             hhhhhhhhhhcccchhhhhHHHHhcCCCCCCc--ccccCcccchHHHHHHHHHHHHHhccc
Confidence            44566779999999999999999999975531  789999999999999999999987654

>KOG3960|consensus

Probab=97.34  E-value=0.00029  Score=62.97  Aligned_cols=58  Identities=22%  Similarity=0.390  Sum_probs=48.8

Q ss_pred             CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      +|+..-.+-||||=.++|+.|..||.=--.    ....+|-|.+||+.||+||..||.-.+.
T Consensus       117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~----NPNQRLPKVEILRsAI~YIE~Lq~LL~~  174 (284)
T KOG3960|consen  117 DRRKAATMRERRRLKKVNEAFETLKRRTSS----NPNQRLPKVEILRSAIRYIERLQALLQE  174 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            567778899999999999999999975321    1478999999999999999999887654

>PLN03217 transcription factor ATBS1; Provisional

Probab=96.73  E-value=0.0034  Score=48.03  Aligned_cols=50  Identities=16%  Similarity=0.315  Sum_probs=43.1

Q ss_pred             HHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641          62 RDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR  111 (202)
Q Consensus        62 RdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~  111 (202)
                      -|-||+-+..|+.|+|+....-...|..-+.||+.|..||+.|++++...
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL   68 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL   68 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999998754235679999999999999999999998543

>KOG3910|consensus

Probab=95.04  E-value=0.027  Score=54.81  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=50.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      +||++..+.-||-|=.-||+.|.||-+|.-....  ...-..|.-||-+||.-|-.|.+++..
T Consensus       524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlk--SeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  524 KERRMANNARERLRVRDINEAFKELGRMCQLHLK--SEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhc--ccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            4677888888988877799999999999754332  456688999999999999999999853

>KOG3558|consensus

Probab=94.22  E-value=0.025  Score=56.80  Aligned_cols=49  Identities=20%  Similarity=0.401  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHh
Q psy3641          56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV  107 (202)
Q Consensus        56 ~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~  107 (202)
                      -.-|-||-+=|.-|.||+.+||-..  ...+.||||+|+++||.||| |++-
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~--aisshLDkaSimRLtISyLR-lrk~  100 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPA--AISSHLDKASIMRLTISYLR-LRKF  100 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcc--hhhhhhhhHHHHHHHHHHHH-HHHH
Confidence            3567899999999999999999422  23689999999999999998 4443

>KOG4395|consensus

Probab=90.95  E-value=0.28  Score=44.31  Aligned_cols=61  Identities=20%  Similarity=0.295  Sum_probs=51.1

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          47 NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        47 ~r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      ++.|+..-+..|+||-.-+|..|+.|+..||.-.   ...||+|-+.|.|+-.||--|-.....
T Consensus       171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~---~d~~LSkyetLqmaq~yi~~l~~~l~~  231 (285)
T KOG4395|consen  171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDGD---SDKKLSKYETLQMAQGYILALGCLLDL  231 (285)
T ss_pred             HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCC---ccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence            3456677889999999999999999999999632   368999999999999999988776543

>KOG3559|consensus

Probab=88.97  E-value=0.4  Score=46.21  Aligned_cols=45  Identities=22%  Similarity=0.413  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q psy3641          57 IEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKY  103 (202)
Q Consensus        57 iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~  103 (202)
                      ..|.||++=|-.+.||..|+|-+..  -.+.+||++|+++|-.|||.
T Consensus         8 aA~tRRekEN~EF~eLAklLPLa~A--ItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    8 AARTRREKENYEFYELAKLLPLASA--ITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             HHHHHHHhhcchHHHHHhhccchhh--hhhccchhhhhhHHHHHHHH
Confidence            3577999999999999999997544  24569999999999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
4f3l_B	387	Crystal Structure Of The Heterodimeric Clock:bmal1		2e-04
4h10_A	73	Intermolecular Recognition Revealed By The Complex		7e-04

>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 387

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 53  SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYL 104
           +H  IEKRRRD+MN+ + +L+ L+P         +++K  ++ MA++HMK L
Sbjct: 16  AHSQIEKRRRDKMNSFIDELASLVPT--CNAMSRKLDKLTVLRMAVQHMKTL 65

>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex Structure Of Human Clock-bmal1 Basic Helix-loop-helix Domains With E-box Dna Length = 73

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 53  SHRIIEKRRRDRMNNCLADLSRLIP-ADYLKKGRGRIEKTEIIEMAIKHMKYL 104
           +H  IEKRRRD+MN+ + +L+ L+P  + + +   +++K  ++ MA++HMK L
Sbjct: 12  AHSQIEKRRRDKMNSFIDELASLVPTCNAMSR---KLDKLTVLRMAVQHMKTL 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1a0a_A	63	BHLH, protein (phosphate system positive regulator	4e-18
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	1e-12
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	1e-06
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	4e-06
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	9e-06
4f3l_A	361	Mclock, circadian locomoter output cycles protein	2e-05
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	6e-05
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-04
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	9e-04

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 74.1 bits (182), Expect = 4e-18
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRI-EKTEIIEMAIKHMKYLHSVVCT 110
            SH+  E+ RR+R+   L +L+ LIPA++ ++       K   +E A +++++L     T
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 46  LNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105
           ++ +    H  +E+RRRD++NN +  LS++IP   ++  +    K  I+  A  +++ L 
Sbjct: 1   MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 53  SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
           +H  IEKR R  +N+ + +L  L+          ++ K+ ++  AI ++++L    
Sbjct: 9   AHNAIEKRYRSSINDKIIELKDLVVGT-----EAKLNKSAVLRKAIDYIRFLQHSN 59

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 53  SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
            H  +E++RRD + +    L   +P+   +K      + +I++ A ++++Y+  
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS----RAQILDKATEYIQYMRR 54

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 44.2 bits (104), Expect = 9e-06
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 42  EKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHM 101
           E +   +    +H  IEKRRRD+MN+ + +L+ L+P         +++K  ++ MA++HM
Sbjct: 5   EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC--NAMSRKLDKLTVLRMAVQHM 62

Query: 102 K 102
           K
Sbjct: 63  K 63

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 53  SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRT 112
           S    EK+RRD+ N  + +L  ++P +       +++K+ +++ +I  ++          
Sbjct: 15  SRNKSEKKRRDQFNVLIKELGSMLPGN-----ARKMDKSTVLQKSIDFLRKHKETTAQSD 69

Query: 113 PNANPSNELPLENSQMLDN 131
            +    +  P   S     
Sbjct: 70  ASEIRQDWKPTFLSNEEFT 88

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 53  SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
            H  +E++RRD + +    L   +P+   +K      + +I++ A ++++Y+  
Sbjct: 15  HHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEYIQYMRR 64

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 47  NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
                 +H ++E++RR+ +      L   IP     +   +  K  I++ A  ++  + +
Sbjct: 3   MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNE---KAPKVVILKKATAYILSVQA 59

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
            +H  +EK RR  +   L  L  L+P         R     ++  A  H+K L  
Sbjct: 3   STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS---RHTTLSLLTKAKLHIKKLED 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.75
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.7
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.66
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.65
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.57
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.52
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.46
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.43
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.38
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.34
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.28
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.26
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.2
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.08
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.99
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.87
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.8
2db7_A	64	Hairy/enhancer-OF-split related with YRPW motif 1;	98.71
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.18

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.75  E-value=9.2e-19  Score=123.64  Aligned_cols=59  Identities=27%  Similarity=0.405  Sum_probs=53.8

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhcc-CCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKK-GRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~-~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      ++.+|+++||+||+|||.+|.+|+.|||.++..+ +..|++||+||++||+||+.|++++
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999987654 3689999999999999999999875

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.70  E-value=2.9e-18  Score=124.54  Aligned_cols=56  Identities=36%  Similarity=0.605  Sum_probs=50.9

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHh
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV  107 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~  107 (202)
                      ++.+|+++||+||++||.+|.+|+.|||.|..  +..|+|||+||++||+||+.|+..
T Consensus         9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~--~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A            9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNA--MSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT--CSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHcccccc--ccccccHHHHHHHHHHHHHHHhcC
Confidence            45679999999999999999999999999863  468999999999999999999864

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.66  E-value=2.5e-17  Score=115.74  Aligned_cols=61  Identities=26%  Similarity=0.444  Sum_probs=53.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      ..++.+|+++||+||++||.+|.+|+.|||.+.......|++|++||++||+||+.|+.+.
T Consensus         3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999998764322369999999999999999999875

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.65  E-value=4.6e-17  Score=117.88  Aligned_cols=55  Identities=20%  Similarity=0.480  Sum_probs=50.1

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhc
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVC  109 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~  109 (202)
                      ++.+|+++||+||++||.+|.+|++|||.     ...|++|++||++||+||+.|+....
T Consensus         8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-----~~~K~dK~sIL~~aI~yik~Lq~~~~   62 (71)
T 4h10_B            8 KRVSRNKSEKKRRDQFNVLIKELGSMLPG-----NARKMDKSTVLQKSIDFLRKHKEITA   62 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSS-----CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHhhHHHHHHHHHHHHHHhCCC-----CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            35679999999999999999999999995     35799999999999999999999863

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.57  E-value=8.6e-16  Score=120.16  Aligned_cols=62  Identities=26%  Similarity=0.383  Sum_probs=49.3

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR  111 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~  111 (202)
                      +.++.+|+++||+||++||++|.+|+.|||.|..  ...|++|++||++||+||+.|+.+....
T Consensus        25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~--~~~k~~Ka~IL~~aieYIk~Lq~~~~~l   86 (118)
T 4ati_A           25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSND--PDMRWNKGTILKASVDYIRKLQREQQRA   86 (118)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHSCCC------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC--ccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999998753  2579999999999999999999887654

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.52  E-value=4.4e-15  Score=109.21  Aligned_cols=56  Identities=23%  Similarity=0.452  Sum_probs=51.4

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      ++.+|+++||+||++||++|.+|+.|||.+     ..|++|++||.+||+||+.|+.+...
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-----~~k~~Ka~IL~~Ai~YI~~Lq~~~~~   61 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGT-----EAKLNKSAVLRKAIDYIRFLQHSNQK   61 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-----SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999973     58999999999999999999998754

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.46  E-value=3.5e-14  Score=103.93  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=51.2

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      ++.+|+.+||+||+.||.+|++|+.+||.+.    ..|++|++||.+||+||+.|+.....
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~----~~k~sK~~iL~~Ai~YI~~L~~~~~~   58 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ----GEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT----TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999999999999754    57999999999999999999987643

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.43  E-value=7.4e-14  Score=101.76  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=51.6

Q ss_pred             CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      ++.+|+.+||+||..||.+|.+|+.|||.+.    ..|++|++||.+||+||+.|+.....
T Consensus        12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~----~~k~sK~~iL~~Ai~YI~~L~~~~~~   68 (80)
T 1hlo_A           12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ----GEKASRAQILDKATEYIQYMRRKNHT   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT----TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC----CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999754    47999999999999999999988754

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.38  E-value=6.3e-13  Score=97.00  Aligned_cols=62  Identities=21%  Similarity=0.325  Sum_probs=49.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR  111 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~  111 (202)
                      .+++..|+.+||+||+.||++|.+|+.+||.+..  +..+++|++||..||+||+.|+++....
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~--~~K~~sK~~IL~~AieYI~~Lq~~l~e~   64 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLK--SDKAQTKLLILQQAVQVILGLEQQVRER   64 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999997553  2344589999999999999999998654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.34  E-value=4.3e-13  Score=99.99  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=51.2

Q ss_pred             CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      +..|+++||+||+.||++|..|+.+||....   ..|++|++||..||+||+.|+.....
T Consensus         7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~---~~K~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A            7 RRTHNVLERQRRNELKRSFFALRDQIPELEN---NEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTT---CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999997532   57999999999999999999998754

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.28  E-value=2.6e-12  Score=113.52  Aligned_cols=56  Identities=20%  Similarity=0.466  Sum_probs=43.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      +.++.+|+++|||||++||..|.+|+.|||.     ..+||+|++||++||+|||.++...
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-----~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-----NARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCS-----SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-----CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            3456789999999999999999999999993     3689999999999999999988764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.26  E-value=1.7e-12  Score=116.19  Aligned_cols=59  Identities=34%  Similarity=0.594  Sum_probs=51.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      +.++.+|+.+|||||++||..|.+|+.|||.+..  ...||+|++||++||.|||.|+...
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~--~~~k~dk~~il~~~~~~l~~~~~~~   69 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA--MSRKLDKLTVLRMAVQHMKTLRGAT   69 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH--CSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCc--cccccCHHHHHHHHHHHHHHhhccc
Confidence            3346689999999999999999999999998753  4799999999999999999998543

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.20  E-value=7.2e-12  Score=91.99  Aligned_cols=56  Identities=25%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             CCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        52 ~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      ..|+.+||+||+.||.||..|+++||....   ..|++|++||..|++||+.|+.....
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~---~~k~sk~~iL~kA~~yI~~L~~~~~~   58 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPD---SSRHTTLSLLTKAKLHIKKLEDSDRK   58 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSS---SCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999996432   68999999999999999999998754

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.08  E-value=2.5e-11  Score=86.86  Aligned_cols=56  Identities=23%  Similarity=0.409  Sum_probs=49.7

Q ss_pred             CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      +++..|+..||+|+..||++|+.|+.+||..    ...|++|.+||..||+||..|+...
T Consensus        11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~----~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           11 DRRKAATMRERRRLSKVNEAFETLKRSTSSN----PNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC----TTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3456799999999999999999999999953    2579999999999999999999864

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.99  E-value=2.3e-10  Score=79.94  Aligned_cols=54  Identities=20%  Similarity=0.352  Sum_probs=48.4

Q ss_pred             CCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641          52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV  108 (202)
Q Consensus        52 ~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~  108 (202)
                      ..|+..||+|+..||.+|+.|+.+||...   ...|++|.+||.+||+||..|+...
T Consensus         4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~---~~~klSKi~tLr~Ai~YI~~L~~~L   57 (60)
T 2ql2_B            4 MKANARERNRMHGLNAALDNLRKVVPCYS---KTQKLSKIETLRLAKNYIWALSEIL   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSSCC---SSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHccCCC---CcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999642   3689999999999999999999875

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.87  E-value=1.8e-09  Score=80.24  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             HHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641          61 RRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR  111 (202)
Q Consensus        61 RRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~  111 (202)
                      -|+.||++|.+|..|||++..  ...|++|++||..||+||++|++...+.
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~--~~~k~nKg~IL~ksvdYI~~Lq~e~~r~   51 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSND--PDMRWNKGTILKASVDYIRKLQREQQRA   51 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCC--TTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCC--cccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999998754  4789999999999999999999987653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.80  E-value=1.6e-09  Score=77.76  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHH
Q psy3641          56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS  106 (202)
Q Consensus        56 ~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~  106 (202)
                      .-||+|+..||.+|+.|+.+||...   ...|++|.+||+.||+||..|+.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p---~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVP---RGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCC---TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC---CCCCccHHHHHHHHHHHHHHHHc
Confidence            5578899999999999999999743   26899999999999999999985

>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1

Probab=98.71  E-value=4.7e-09  Score=74.42  Aligned_cols=27  Identities=33%  Similarity=0.742  Sum_probs=24.1

Q ss_pred             chhHHHH-HHHHHHHHHHhhhhhcCCCC
Q psy3641         176 INLEHFK-LGYQECLSESMHYLVEVKGY  202 (202)
Q Consensus       176 ~~~~~y~-~Gf~eC~~Ev~rfL~~~~G~  202 (202)
                      ...+.|+ +||++|+.||+|||+++||+
T Consensus        14 ~~~~~yrs~Gf~eC~~EV~rfLs~~eg~   41 (64)
T 2db7_A           14 ALAMDYRSLGFRECLAEVARYLSIIEGL   41 (64)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCCCC
Confidence            4478899 59999999999999999986

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.18  E-value=2.6e-06  Score=64.86  Aligned_cols=50  Identities=22%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641          58 EKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT  110 (202)
Q Consensus        58 EKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~  110 (202)
                      |+.|-..||++|+.|+.+||...   ...||+|.+||++||+||..|+.....
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p---~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIP---QNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSC---SSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC---CCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            35566679999999999999643   368999999999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	7e-12
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-11
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-08
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	6e-08
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-07
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	9e-07
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-06
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	0.002

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 7e-12
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 46  LNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105
           ++ +    H  +E+RRRD++NN +  LS++IP   ++  +    K  I+  A  +++ L 
Sbjct: 1   MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

Query: 106 S 106
            
Sbjct: 61  Q 61

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRG-RIEKTEIIEMAIKHMKYLHSVVCT 110
            SH+  E+ RR+R+   L +L+ LIPA++ ++       K   +E A +++++L     T
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           +K  N +   +  + E+RR  ++N     L R   ++  +    R+ K EI+  AI++++
Sbjct: 5   RKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQ----RLPKVEILRNAIRYIE 60

Query: 103 YLHSVV 108
            L +++
Sbjct: 61  GLQALL 66

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 6e-08
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110
             H  +E++RRD + +    L   +P+   +K      + +I++ A ++++Y+     T
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEYIQYMRRKNHT 58

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H ++E++RR+ +      L   IP     +   ++    I++ A  ++  + +  
Sbjct: 8   RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKV---VILKKATAYILSVQAEE 61

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 9e-07
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H  IEKR R  +N+ + +L  L+          ++ K+ ++  AI ++++L    
Sbjct: 8   TAHNAIEKRYRSSINDKIIELKDLVVGTE-----AKLNKSAVLRKAIDYIRFLQHSN 59

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H  +EK RR  +   L  L  L+P         R     ++  A  H+K L    
Sbjct: 3   STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS---RHTTLSLLTKAKLHIKKLEDSD 56

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 62  RDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
           R  +N+ + +L  L+          ++ K+ ++  AI ++KYL  V 
Sbjct: 1   RSSINDKIIELKDLVMG-----TDAKMHKSGVLRKAIDYIKYLQQVN 42