Psyllid ID: psy3682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVFMNRAEMSSDDVR
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHcHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHcccccc
Coil and Loop (DISEMBL)
msveycyqrnwhkQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAIcptgyctipedlGIVCLWLGYfssilnpiIYTIFNRTFRAAFIRLLKCkcgqvtkpiryrsvndratassgpatvpltlpptpgrtlsvsmqdvshtyptntkkqeaggkgrykkEVKKRERGELEAVFMNraemssddvr
Flexible Loop (DISEMBL)
MSVeycyqrnwhkqaVTSVILGLFKHIKKAQrrtrqastaansvrteqkaSKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKckcgqvtkpiryrsvndratassgpatvpltlpptPGRTLSVsmqdvshtyptntkkqeaggkgrykkevkkrergeleavfmnraemssddvr
Low Complexity Region (SEG)
MSVEYCYQRNWHKQAVTSVILGLFKHIKKaqrrtrqastaaNSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGpatvpltlpptpgrtlSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVFMNRAEMSSDDVR
Disordered region (IsUnstruct)
***EYCYQRNWHKQAVTSVILGLFKHIK***********************KVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRS********************************************************************************
Disordered Region (DISOPRED)
**************************************************SKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQV*********************************************************************************M******
Disordered Region (DISEMBL)
MSVEYCYQRNWHKQAVTSVILGLFKH*********************QKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDV**************************ERGELEAVFMNRA********
Disordered Region (DISPRO)
**************************************TAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATAS*GP*TV******************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVFMNRAEMSSDDVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q75Z89	470	5-hydroxytryptamine recep	yes	N/A	0.555	0.257	0.387	4e-20
P35363	471	5-hydroxytryptamine recep	yes	N/A	0.559	0.259	0.387	1e-19
P14842	471	5-hydroxytryptamine recep	yes	N/A	0.559	0.259	0.387	1e-19
O46635	470	5-hydroxytryptamine recep	yes	N/A	0.555	0.257	0.387	2e-19
P28223	471	5-hydroxytryptamine recep	yes	N/A	0.550	0.254	0.388	2e-19
P50129	470	5-hydroxytryptamine recep	yes	N/A	0.545	0.253	0.388	2e-19
P50128	471	5-hydroxytryptamine recep	yes	N/A	0.458	0.212	0.451	2e-19
P18599	471	5-hydroxytryptamine recep	yes	N/A	0.559	0.259	0.380	3e-19
Q4LBB6	1256	Octopamine receptor beta-	no	N/A	0.522	0.090	0.377	6e-19
Q5R4Q6	471	5-hydroxytryptamine recep	N/A	N/A	0.550	0.254	0.381	2e-18

>sp|Q75Z89|5HT2A_BOVIN 5-hydroxytryptamine receptor 2A OS=Bos taurus GN=HTR2A PE=2 SV=1

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 21/142 (14%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++                 RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREP------------GSYGRRTMQ------SISNEQKACKVLGIVFFL 330

Query: 61  FVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           FV+ W PFF+  I+  IC    C   + E L  V +W+GY SS +NP++YT+FN+T+R+A
Sbjct: 331 FVVMWCPFFITNIMAVICKES-CNRDVIEALLNVFVWIGYLSSAVNPLVYTLFNKTYRSA 389

Query: 119 FIRLLKCKCGQVTKPIRYRSVN 140
           F R ++C+  +  KP++   VN
Sbjct: 390 FSRYIQCQYKENKKPLQLILVN 411

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.
Bos taurus (taxid: 9913)

>sp|P35363|5HT2A_MOUSE 5-hydroxytryptamine receptor 2A OS=Mus musculus GN=Htr2a PE=2 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 20/142 (14%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++  +            A RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREPGS-----------YAGRRTMQ------SISNEQKACKVLGIVFFL 331

Query: 61  FVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           FV+ W PFF+  I+  IC    C   +   L  V +W+GY SS +NP++YT+FN+T+R+A
Sbjct: 332 FVVMWCPFFITNIMAVICKES-CNENVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYRSA 390

Query: 119 FIRLLKCKCGQVTKPIRYRSVN 140
           F R ++C+  +  KP++   VN
Sbjct: 391 FSRYIQCQYKENRKPLQLILVN 412

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Mus musculus (taxid: 10090)

>sp|P14842|5HT2A_RAT 5-hydroxytryptamine receptor 2A OS=Rattus norvegicus GN=Htr2a PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 20/142 (14%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++  +            A RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREPGS-----------YAGRRTMQ------SISNEQKACKVLGIVFFL 331

Query: 61  FVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           FV+ W PFF+  I+  IC    C   +   L  V +W+GY SS +NP++YT+FN+T+R+A
Sbjct: 332 FVVMWCPFFITNIMAVICKES-CNENVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYRSA 390

Query: 119 FIRLLKCKCGQVTKPIRYRSVN 140
           F R ++C+  +  KP++   VN
Sbjct: 391 FSRYIQCQYKENRKPLQLILVN 412

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Rattus norvegicus (taxid: 10116)

>sp|O46635|5HT2A_CANFA 5-hydroxytryptamine receptor 2A OS=Canis familiaris GN=HTR2A PE=2 SV=2

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 21/142 (14%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++                 RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREP------------GSYGRRTMQ------SISNEQKACKVLGIVFFL 330

Query: 61  FVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           FV+ W PFF+  I+  IC    C   I   L  V +W+GY SS +NP++YT+FN+T+R+A
Sbjct: 331 FVVMWCPFFITNIMAVICKES-CNEDIIGALLNVFVWIGYLSSAVNPLVYTLFNKTYRSA 389

Query: 119 FIRLLKCKCGQVTKPIRYRSVN 140
           F R ++C+  +  KP++   VN
Sbjct: 390 FSRYIQCQYKENKKPLQLILVN 411

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Canis familiaris (taxid: 9615)

>sp|P28223|5HT2A_HUMAN 5-hydroxytryptamine receptor 2A OS=Homo sapiens GN=HTR2A PE=1 SV=2

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 24/144 (16%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++  +              RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREPGS-----------YTGRRTMQ------SISNEQKACKVLGIVFFL 331

Query: 61  FVLCWAPFFLLQILQAICPTGYCTIPED----LGIVCLWLGYFSSILNPIIYTIFNRTFR 116
           FV+ W PFF+  I+  IC    C   ED    L  V +W+GY SS +NP++YT+FN+T+R
Sbjct: 332 FVVMWCPFFITNIMAVICKES-CN--EDVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYR 388

Query: 117 AAFIRLLKCKCGQVTKPIRYRSVN 140
           +AF R ++C+  +  KP++   VN
Sbjct: 389 SAFSRYIQCQYKENKKPLQLILVN 412

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Homo sapiens (taxid: 9606)

>sp|P50129|5HT2A_PIG 5-hydroxytryptamine receptor 2A OS=Sus scrofa GN=HTR2A PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 25/144 (17%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++                 RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREP------------GSYGRRTMQ------SISNEQKACKVLGIVFFL 330

Query: 61  FVLCWAPFFLLQILQAICPTGYCTIPED----LGIVCLWLGYFSSILNPIIYTIFNRTFR 116
           FV+ W PFF+  I+  IC    C   ED    L  V +W+GY SS +NP++YT+FN+T+R
Sbjct: 331 FVVMWCPFFITNIMAVICKES-CN--EDVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYR 387

Query: 117 AAFIRLLKCKCGQVTKPIRYRSVN 140
           +AF R ++C+  +  KP++   VN
Sbjct: 388 SAFSRYIQCQYKENKKPLQLILVN 411

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Sus scrofa (taxid: 9823)

>sp|P50128|5HT2A_MACMU 5-hydroxytryptamine receptor 2A OS=Macaca mulatta GN=HTR2A PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 13/113 (11%)

Query: 32  RRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPED--- 88
           RRT Q      S+  EQKA KVLG+VFF FV+ W PFF+  I+  IC    C   ED   
Sbjct: 309 RRTMQ------SISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICKES-CN--EDVIG 359

Query: 89  -LGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
            L  V +W+GY SS +NP++YT+FN+T+R+AF R ++C+  +  KP++   VN
Sbjct: 360 ALLNVFVWIGYLSSAVNPLVYTLFNKTYRSAFSRYIQCQYKENKKPLQLILVN 412

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Macaca mulatta (taxid: 9544)

>sp|P18599|5HT2A_CRIGR 5-hydroxytryptamine receptor 2A OS=Cricetulus griseus GN=HTR2A PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 20/142 (14%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++  +              RRT Q      S+  EQKA KVLG+VFF 
Sbjct: 289 LSSEKLFQRSIHREPGS-----------YTGRRTMQ------SISNEQKACKVLGIVFFL 331

Query: 61  FVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           FV+ W PFF+  I+  IC    C   +   L  V +W+GY SS +NP++YT+FN+T+R+A
Sbjct: 332 FVVMWCPFFITNIMAVICKES-CNEHVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYRSA 390

Query: 119 FIRLLKCKCGQVTKPIRYRSVN 140
           F R ++C+  +  KP++   VN
Sbjct: 391 FSRYIQCQYKENRKPLQLILVN 412

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Cricetulus griseus (taxid: 10029)

>sp|Q4LBB6|OCTB3_DROME Octopamine receptor beta-3R OS=Drosophila melanogaster GN=Octbeta3R PE=2 SV=4

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 13/127 (10%)

Query: 9    RNWHKQAVTSVILGLFKHIKKAQRRTR----QASTAANSVR------TEQKASKVLGLVF 58
            R WHK+  T+ +   ++  K  +RR +           SVR       E KA++ LG++ 
Sbjct: 1117 RFWHKR--TAAVTACWQQSKNRKRRFKTGCSHCGATGGSVRPAKGWKAEHKAARTLGIIM 1174

Query: 59   FTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
              F+LCW PFFL  ++ ++C    C  P+ L +V  W+GYF+S LNP+IY  FNR FR A
Sbjct: 1175 GVFLLCWLPFFLWYVITSLCGPA-CPCPDVLVVVLFWIGYFNSTLNPLIYAYFNRDFREA 1233

Query: 119  FIRLLKC 125
            F   L+C
Sbjct: 1234 FRNTLEC 1240

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Drosophila melanogaster (taxid: 7227)

>sp|Q5R4Q6|5HT2A_PONPY 5-hydroxytryptamine receptor 2A OS=Pongo pygmaeus GN=HTR2A PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 24/144 (16%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFT 60
           +S E  +QR+ H++  +              RRT Q      S+  EQKA KVLG+VF  
Sbjct: 289 LSSEKLFQRSIHREPGS-----------YTGRRTMQ------SISNEQKACKVLGIVFSL 331

Query: 61  FVLCWAPFFLLQILQAICPTGYCTIPED----LGIVCLWLGYFSSILNPIIYTIFNRTFR 116
           FV+ W PFF+  I+  IC    C   ED    L  V +W+GY SS +NP++YT+FN+T+R
Sbjct: 332 FVVMWCPFFITNIMAVICKES-CN--EDVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYR 388

Query: 117 AAFIRLLKCKCGQVTKPIRYRSVN 140
           +AF R ++C+  +  KP++   VN
Sbjct: 389 SAFSRYIQCQYKENKKPLQLILVN 412

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.

Pongo pygmaeus (taxid: 9600)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
328715655	681	PREDICTED: 5-hydroxytryptamine receptor	0.577	0.185	0.632	3e-41
91082069	165	PREDICTED: similar to Serotonin receptor	0.683	0.903	0.561	4e-40
195109995	947	GI24591 [Drosophila mojavensis] gi|19391	0.711	0.163	0.496	9e-38
350409668	665	PREDICTED: 5-hydroxytryptamine receptor	0.559	0.183	0.629	2e-37
24644034	930	serotonin receptor 2, isoform B [Drosoph	0.591	0.138	0.578	2e-37
383848743	643	PREDICTED: 5-hydroxytryptamine receptor	0.711	0.241	0.518	3e-37
390178721	964	GA10393 [Drosophila pseudoobscura pseudo	0.591	0.133	0.578	3e-37
223976009	393	MIP06036p [Drosophila melanogaster]	0.591	0.328	0.578	3e-37
195497110	689	GE25425 [Drosophila yakuba] gi|194182064	0.591	0.187	0.578	5e-37
16768736	295	HL07802p [Drosophila melanogaster]	0.591	0.437	0.578	6e-37

>gi|328715655|ref|XP_001947553.2| PREDICTED: 5-hydroxytryptamine receptor 2B-like [Acyrthosiphon pisum]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 105/136 (77%), Gaps = 10/136 (7%)

Query: 30  AQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDL 89
           A R+ RQ+  AAN+VRTEQKASKVLG+VFFTFVLCW+PFFLL I+ A+CP   C +P+ +
Sbjct: 487 ANRQKRQSLAAANAVRTEQKASKVLGVVFFTFVLCWSPFFLLNIVFAVCPKESCPVPDHV 546

Query: 90  GIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDR------- 142
             VCLWLGY SS +NPIIYTIFN+TFRAAFIRLLKC+C + T+P RYRSV D        
Sbjct: 547 TEVCLWLGYVSSTINPIIYTIFNKTFRAAFIRLLKCRCHK-TRPHRYRSVTDNRHSALIS 605

Query: 143 --ATASSGPATVPLTL 156
             + A++G ATVPL+L
Sbjct: 606 TPSGAAAGAATVPLSL 621

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082069|ref|XP_966377.1| PREDICTED: similar to Serotonin receptor 2 CG1056-PB, partial [Tribolium castaneum]

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 114/155 (73%), Gaps = 6/155 (3%)

Query: 33  RTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIV 92
           R ++ + AANSV TEQKASKVLGLVFFTFVLCWAPFF+L IL A CP   C +PE + +V
Sbjct: 5   RVKRKTMAANSVATEQKASKVLGLVFFTFVLCWAPFFILNILFAACPD--CDVPEHVVVV 62

Query: 93  CLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASS--GPA 150
           CLWLGY SS +NPIIYT+FN+TFRAAFIRLL C+C ++++P+RYRSVN+   A+S   P+
Sbjct: 63  CLWLGYVSSTINPIIYTVFNKTFRAAFIRLLLCRCHRLSRPVRYRSVNENRGAASLCTPS 122

Query: 151 TVPL--TLPPTPGRTLSVSMQDVSHTYPTNTKKQE 183
            +PL  +L  TP  T + +      T  TN ++++
Sbjct: 123 ALPLAISLQGTPLLTPASTESSYVRTPSTNFRERD 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109995|ref|XP_001999567.1| GI24591 [Drosophila mojavensis] gi|193916161|gb|EDW15028.1| GI24591 [Drosophila mojavensis]

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 110/165 (66%), Gaps = 10/165 (6%)

Query: 26  HIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTI 85
           +++    R ++ S +AN+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ A CP   C +
Sbjct: 785 NLRFLNNRAKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE--CQV 842

Query: 86  PEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATA 145
           PE +   CLWLGY SS +NPIIYTIFNRTFRAAFIRLLKC C +  +P+RYRSV +  +A
Sbjct: 843 PEHVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCERSGRPLRYRSVTEGRSA 902

Query: 146 SS--GPATVPLTLP------PTPGRTLSVSMQDVSHTYPTNTKKQ 182
            S   P+ +PL +        TP  T +  + +   +Y  N  ++
Sbjct: 903 LSLCAPSALPLAISFQGAPLMTPSTTNATPLSEFRSSYTINEDER 947

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409668|ref|XP_003488809.1| PREDICTED: 5-hydroxytryptamine receptor 2B-like [Bombus impatiens]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 94/127 (74%), Gaps = 5/127 (3%)

Query: 33  RTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIV 92
           RT++ S AAN+V TEQKASKVLGLVFFTFVLCWAPFFLL I  A CP   C++P  +   
Sbjct: 492 RTKRRSLAANAVATEQKASKVLGLVFFTFVLCWAPFFLLNIFFAACPE--CSVPVHVVDT 549

Query: 93  CLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVND---RATASSGP 149
           CLWLGY SS +NP+IYTIFNRTFRAAFIRLLKCKC +  +P RYRSV +    A +   P
Sbjct: 550 CLWLGYVSSTINPVIYTIFNRTFRAAFIRLLKCKCSRSARPARYRSVTEGGRNAMSLCTP 609

Query: 150 ATVPLTL 156
             +PL +
Sbjct: 610 TALPLVI 616

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24644034|ref|NP_730859.1| serotonin receptor 2, isoform B [Drosophila melanogaster] gi|23170474|gb|AAN13284.1| serotonin receptor 2, isoform B [Drosophila melanogaster]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 26  HIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTI 85
           +++    R+++ S +AN+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ A CP   C +
Sbjct: 767 NLRFLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE--CQV 824

Query: 86  PEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATA 145
           PE +   CLWLGY SS +NPIIYTIFNRTFRAAFIRLLKC C +  +P+RYRSV +   A
Sbjct: 825 PEHVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCKRSGRPLRYRSVTEGRGA 884

Query: 146 SS--GPATVPLTL 156
            S   P+ +PL +
Sbjct: 885 LSLCAPSALPLAI 897

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848743|ref|XP_003700007.1| PREDICTED: 5-hydroxytryptamine receptor 2A-like [Megachile rotundata]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 103/164 (62%), Gaps = 9/164 (5%)

Query: 33  RTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIV 92
           RT++ S AAN+V TEQKASKVLGLVFFTFVLCWAPFFLL I  A CP   C++P  +   
Sbjct: 470 RTKRRSMAANAVATEQKASKVLGLVFFTFVLCWAPFFLLNIFFAACPE--CSVPVHVVDT 527

Query: 93  CLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATV 152
           CLWLGY SS +NP+IYTIFN+TFRAAFIRLLKCKC +  +P RYRSV +    +    T 
Sbjct: 528 CLWLGYMSSTINPVIYTIFNKTFRAAFIRLLKCKCSRSARPTRYRSVTEGGRNAMSLCT- 586

Query: 153 PLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKK 196
           P  LP      L++S+Q      PT            Y   + +
Sbjct: 587 PTALP------LAISLQGTPLLTPTTNPAATPASGSSYMTMMHR 624

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178721|ref|XP_001359252.3| GA10393 [Drosophila pseudoobscura pseudoobscura] gi|388859565|gb|EAL28397.3| GA10393 [Drosophila pseudoobscura pseudoobscura]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 26  HIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTI 85
           +++    R+++ S +AN+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ A CP   C +
Sbjct: 802 NLRFLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE--CQV 859

Query: 86  PEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATA 145
           PE +   CLWLGY SS +NPIIYTIFNRTFRAAFIRLLKC C +  +P+RYRSV +   A
Sbjct: 860 PEHVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCERSGRPLRYRSVTEGRGA 919

Query: 146 SS--GPATVPLTL 156
            S   P+ +PL +
Sbjct: 920 LSLCAPSALPLAI 932

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|223976009|gb|ACN32192.1| MIP06036p [Drosophila melanogaster]

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 26  HIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTI 85
           +++    R+++ S +AN+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ A CP   C +
Sbjct: 230 NLRFLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE--CQV 287

Query: 86  PEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATA 145
           PE +   CLWLGY SS +NPIIYTIFNRTFRAAFIRLLKC C +  +P+RYRSV +   A
Sbjct: 288 PEHVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCKRSGRPLRYRSVTEGRGA 347

Query: 146 SS--GPATVPLTL 156
            S   P+ +PL +
Sbjct: 348 LSLCAPSALPLAI 360

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497110|ref|XP_002095963.1| GE25425 [Drosophila yakuba] gi|194182064|gb|EDW95675.1| GE25425 [Drosophila yakuba]

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 100/133 (75%), Gaps = 4/133 (3%)

Query: 26  HIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTI 85
           +++    R+++ S +AN+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ AICP   C +
Sbjct: 528 NLRFLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAICPE--CRV 585

Query: 86  PEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATA 145
           PE +   CLWLGY SS +NPIIYTIFNRTFRAAFIRLLKC C +  +P+R+RSV +   A
Sbjct: 586 PERVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCERSGRPLRFRSVTEGRGA 645

Query: 146 SS--GPATVPLTL 156
            S   P+ +PL +
Sbjct: 646 LSLCAPSALPLAI 658

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16768736|gb|AAL28587.1| HL07802p [Drosophila melanogaster]

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 26  HIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTI 85
           +++    R+++ S +AN+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ A CP   C +
Sbjct: 132 NLRFLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE--CQV 189

Query: 86  PEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATA 145
           PE +   CLWLGY SS +NPIIYTIFNRTFRAAFIRLLKC C +  +P+RYRSV +   A
Sbjct: 190 PEHVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCKRSGRPLRYRSVTEGRGA 249

Query: 146 SS--GPATVPLTL 156
            S   P+ +PL +
Sbjct: 250 LSLCAPSALPLAI 262

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
FB|FBgn0087012	930	5-HT2 "Serotonin receptor 2" [	0.477	0.111	0.669	2.8e-33
ZFIN|ZDB-GENE-070912-500	402	htr2a "5-hydroxytryptamine (se	0.449	0.243	0.46	3.4e-21
MGI|MGI:109521	471	Htr2a "5-hydroxytryptamine (se	0.444	0.205	0.45	1.5e-20
RGD|61800	471	Htr2a "5-hydroxytryptamine (se	0.444	0.205	0.45	1.5e-20
UNIPROTKB|Q75Z89	470	HTR2A "5-hydroxytryptamine rec	0.444	0.206	0.46	9.2e-20
UNIPROTKB|F6R5F6	366	HTR1F "Uncharacterized protein	0.362	0.215	0.444	1.2e-19
ZFIN|ZDB-GENE-120215-60	458	si:dkey-276l13.4 "si:dkey-276l	0.472	0.224	0.451	1.4e-19
UNIPROTKB|E1BVI5	468	HTR2A "5-hydroxytryptamine (Se	0.444	0.207	0.44	1.5e-19
UNIPROTKB|I3L7F4	366	HTR1F "Uncharacterized protein	0.362	0.215	0.444	1.6e-19
UNIPROTKB|O46635	470	HTR2A "5-hydroxytryptamine rec	0.435	0.202	0.460	2.5e-19

FB|FBgn0087012 5-HT2 "Serotonin receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 373 (136.4 bits), Expect = 2.8e-33, P = 2.8e-33
 Identities = 71/106 (66%), Positives = 83/106 (78%)

Query:    42 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSS 101
             N+V TEQKA+KVLGLVFFTFVLCW+PFF+L I+ A CP   C +PE +   CLWLGY SS
Sbjct:   783 NAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE--CQVPEHVVNTCLWLGYVSS 840

Query:   102 ILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASS 147
              +NPIIYTIFNRTFRAAFIRLLKC C +  +P+RYRSV +   A S
Sbjct:   841 TINPIIYTIFNRTFRAAFIRLLKCNCKRSGRPLRYRSVTEGRGALS 886

GO:0005886 "plasma membrane" evidence=ISS;NAS;IDA

GO:0007377 "germ-band extension" evidence=IMP

GO:0007210 "serotonin receptor signaling pathway" evidence=ISS;NAS;TAS

GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0001587 "Gq/11-coupled serotonin receptor activity" evidence=NAS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-070912-500 htr2a "5-hydroxytryptamine (serotonin) receptor 2A" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 3.4e-21, P = 3.4e-21
 Identities = 46/100 (46%), Positives = 67/100 (67%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFS 100
             S+  EQKASKVLG+VFF FV+ W PFF+  +L  +C    C   I   L  V +W+GY S
Sbjct:   257 SISNEQKASKVLGVVFFLFVVMWCPFFITNVLAVVCEPNACNANIMNRLLNVFVWVGYLS 316

Query:   101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
             S +NP++YT+FN+T+R+AF R ++C+  +  KP++   VN
Sbjct:   317 SAVNPLVYTLFNKTYRSAFARYIRCQFHEEKKPLQLILVN 356

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:109521 Htr2a "5-hydroxytryptamine (serotonin) receptor 2A" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
 Identities = 45/100 (45%), Positives = 66/100 (66%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFS 100
             S+  EQKA KVLG+VFF FV+ W PFF+  I+  IC    C   +   L  V +W+GY S
Sbjct:   314 SISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICKES-CNENVIGALLNVFVWIGYLS 372

Query:   101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
             S +NP++YT+FN+T+R+AF R ++C+  +  KP++   VN
Sbjct:   373 SAVNPLVYTLFNKTYRSAFSRYIQCQYKENRKPLQLILVN 412

GO:0001659 "temperature homeostasis" evidence=ISO

GO:0001965 "G-protein alpha-subunit binding" evidence=ISO

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=ISO

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0006950 "response to stress" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0007208 "phospholipase C-activating serotonin receptor signaling pathway" evidence=ISO

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO

GO:0007610 "behavior" evidence=IEA

GO:0007613 "memory" evidence=ISO

GO:0008144 "drug binding" evidence=ISO

GO:0008219 "cell death" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0014059 "regulation of dopamine secretion" evidence=ISO

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0030431 "sleep" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0043267 "negative regulation of potassium ion transport" evidence=ISO

GO:0043406 "positive regulation of MAP kinase activity" evidence=ISO

GO:0045907 "positive regulation of vasoconstriction" evidence=ISO

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051378 "serotonin binding" evidence=ISO

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=ISO

GO:0060402 "calcium ion transport into cytosol" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISO

GO:0071886 "1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding" evidence=ISO

GO:1900482 "positive regulation of diacylglycerol biosynthetic process" evidence=IEA

RGD|61800 Htr2a "5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
 Identities = 45/100 (45%), Positives = 66/100 (66%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFS 100
             S+  EQKA KVLG+VFF FV+ W PFF+  I+  IC    C   +   L  V +W+GY S
Sbjct:   314 SISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICKES-CNENVIGALLNVFVWIGYLS 372

Query:   101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
             S +NP++YT+FN+T+R+AF R ++C+  +  KP++   VN
Sbjct:   373 SAVNPLVYTLFNKTYRSAFSRYIQCQYKENRKPLQLILVN 412

GO:0001659 "temperature homeostasis" evidence=IMP

GO:0001965 "G-protein alpha-subunit binding" evidence=IMP

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA;ISO

GO:0004993 "serotonin receptor activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA;ISO

GO:0006950 "response to stress" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007208 "phospholipase C-activating serotonin receptor signaling pathway" evidence=IDA

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO

GO:0007568 "aging" evidence=IEP

GO:0007613 "memory" evidence=IMP

GO:0008144 "drug binding" evidence=IEA;ISO

GO:0008219 "cell death" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0014059 "regulation of dopamine secretion" evidence=IMP

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0030431 "sleep" evidence=IMP

GO:0032403 "protein complex binding" evidence=IPI

GO:0042493 "response to drug" evidence=ISO;IMP

GO:0043198 "dendritic shaft" evidence=IDA

GO:0043267 "negative regulation of potassium ion transport" evidence=IMP

GO:0043406 "positive regulation of MAP kinase activity" evidence=IMP

GO:0045907 "positive regulation of vasoconstriction" evidence=IMP

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA;ISO

GO:0051378 "serotonin binding" evidence=ISO;IDA

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=IMP

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA;ISO

GO:0071886 "1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding" evidence=IEA;ISO

UNIPROTKB|Q75Z89 HTR2A "5-hydroxytryptamine receptor 2A" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 46/100 (46%), Positives = 67/100 (67%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT--IPEDLGIVCLWLGYFS 100
             S+  EQKA KVLG+VFF FV+ W PFF+  I+  IC    C   + E L  V +W+GY S
Sbjct:   313 SISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICKES-CNRDVIEALLNVFVWIGYLS 371

Query:   101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
             S +NP++YT+FN+T+R+AF R ++C+  +  KP++   VN
Sbjct:   372 SAVNPLVYTLFNKTYRSAFSRYIQCQYKENKKPLQLILVN 411

GO:0005886 "plasma membrane" evidence=IEA

GO:0071886 "1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0051378 "serotonin binding" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6R5F6 HTR1F "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 36/81 (44%), Positives = 56/81 (69%)

Query:    47 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
             E+KA+  LGL+   FV+CW PFF+ +++  +C    C I E++     WLGY +S++NP+
Sbjct:   288 ERKAATTLGLILGAFVICWLPFFVKELVVNVCEK--CKISEEMSNFLTWLGYLNSLINPL 345

Query:   107 IYTIFNRTFRAAFIRLLKCKC 127
             IYTIFN  F+ AF +L++C+C
Sbjct:   346 IYTIFNEDFKKAFQKLVRCRC 366

GO:0005886 "plasma membrane" evidence=IEA

GO:0051378 "serotonin binding" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-120215-60 si:dkey-276l13.4 "si:dkey-276l13.4" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 51/113 (45%), Positives = 74/113 (65%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDL--GI--VCLWLGY 98
             S+  EQKASKVLG+VF  FV+ W PFF+  ++  +C +  C   EDL  G+  V +W+GY
Sbjct:   304 SISNEQKASKVLGVVFLLFVIMWCPFFVTNVMAVVCGS-VCD--EDLVGGLMNVFVWVGY 360

Query:    99 FSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVND---RATASSG 148
              SS +NP IYT+FN+T+RAAF R ++C+  +  +P++   VN     A +SSG
Sbjct:   361 LSSAVNPFIYTLFNKTYRAAFARYMQCRYHEERRPLQLILVNTIPPLAYSSSG 413

GO:0043198 "dendritic shaft" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=IEA

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0060402 "calcium ion transport into cytosol" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:1900482 "positive regulation of diacylglycerol biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1BVI5 HTR2A "5-hydroxytryptamine (Serotonin) receptor 2A" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/100 (44%), Positives = 66/100 (66%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGI--VCLWLGYFS 100
             S+  EQKASKVLG+VFF FV+ W PFF+  ++  IC    C      G+  + +W+GY S
Sbjct:   311 SISNEQKASKVLGIVFFLFVVMWCPFFITNVMAVICKES-CNEEVIGGLLNIFVWIGYLS 369

Query:   101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
             S +NP++YT+FN+T+R+AF R ++C+  +  KP +   VN
Sbjct:   370 SAVNPLVYTLFNKTYRSAFSRYIQCRYKEEKKPFQLILVN 409

GO:0016021 "integral to membrane" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0051378 "serotonin binding" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0071886 "1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding" evidence=IEA

UNIPROTKB|I3L7F4 HTR1F "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 36/81 (44%), Positives = 56/81 (69%)

Query:    47 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
             E+KA+  LGL+   FV+CW PFF+ +++  +C    C I E++     WLGY +S++NP+
Sbjct:   288 ERKAATTLGLILGAFVICWLPFFVKELVVNVCEK--CKISEEMSNFLTWLGYLNSLINPM 345

Query:   107 IYTIFNRTFRAAFIRLLKCKC 127
             IYTIFN  F+ AF +L++C+C
Sbjct:   346 IYTIFNEDFKKAFQKLVRCRC 366

GO:0005886 "plasma membrane" evidence=IEA

GO:0051378 "serotonin binding" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O46635 HTR2A "5-hydroxytryptamine receptor 2A" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/102 (46%), Positives = 68/102 (66%)

Query:    43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDL-GI---VCLWLGY 98
             S+  EQKA KVLG+VFF FV+ W PFF+  I+  IC    C   ED+ G    V +W+GY
Sbjct:   313 SISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICKES-CN--EDIIGALLNVFVWIGY 369

Query:    99 FSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
              SS +NP++YT+FN+T+R+AF R ++C+  +  KP++   VN
Sbjct:   370 LSSAVNPLVYTLFNKTYRSAFSRYIQCQYKENKKPLQLILVN 411

GO:0007210 "serotonin receptor signaling pathway" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0051378 "serotonin binding" evidence=IDA

GO:0008144 "drug binding" evidence=IDA

GO:0004993 "serotonin receptor activity" evidence=IDA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	5e-21
pfam10323	283	pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR	0.004

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 87.4 bits (217), Expect = 5e-21
 Identities = 30/85 (35%), Positives = 48/85 (56%)

Query: 24  FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 83
            + ++K  R     + A  S   E+KA+K+L +V   FVLCW P+ ++ +L ++CP    
Sbjct: 167 LRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226

Query: 84  TIPEDLGIVCLWLGYFSSILNPIIY 108
            +     ++ LWL Y +S LNPIIY
Sbjct: 227 RLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor Srv

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 23  LFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPF--FLLQILQAICPT 80
           LF  I+K     + + T + S++ E      + L F  F+L  A     +  IL      
Sbjct: 186 LFFVIRKKF--NKNSQTKSKSLKRE------VRLAFQVFILVLAFLIILIFYILSNYFSQ 237

Query: 81  GYCTIPEDLGIVCLWLGY------FSSILNPIIYTIFNRTFRAAFIRLLKC 125
              T   D  I  L   Y       S I NP +  IFNR  R    ++LKC
Sbjct: 238 ---TQNTDP-IFYLRALYPIASGLLSYI-NPYLLLIFNRDLRKQVRKMLKC 283

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srv is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 283

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		9e-16
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		1e-12
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		2e-09
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-09
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		5e-09
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		5e-09
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		5e-09
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		6e-09
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		8e-09
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		1e-08
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		1e-08
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		1e-08
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		1e-08
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		4e-08
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		4e-07
3v2w_A	520	Crystal Structure Of A Lipid G Protein-Coupled Rece		2e-06
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		3e-05
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		6e-05
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		7e-05
4grv_A	510	The Crystal Structure Of The Neurotensin Receptor N		2e-04
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		4e-04
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		4e-04
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		5e-04

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+KA++++ +V   F++CW PFFL  +L   C T  C +  +L     WLGY +S LNP+
Sbjct: 396 EKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPV 453
Query: 107 IYTIFNRTFRAAFIRLLKC 125
           IYT FN  FR AF+++L C
Sbjct: 454 IYTTFNIEFRKAFLKILSC 472

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+KA+K LG +   F+LCW P+F+  ++ A C    C   E L +  +WLGY +S LNP+
Sbjct: 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-CN--EHLHMFTIWLGYINSTLNPL 424
Query: 107 IYTIFNRTFRAAFIRLLKCKCGQ 129
           IY + N  F+  F R+L  + G+
Sbjct: 425 IYPLCNENFKKTFKRILHIRSGE 447

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+KA++ L  +   F++ W P+ ++ ++   C +    IP+    +  WL Y +S +NP+
Sbjct: 369 EKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDS---CIPKTYWNLGYWLCYINSTVNPV 425
Query: 107 IYTIFNRTFRAAFIRLLKCKC 127
            Y + N+TFR  F  LL C+C
Sbjct: 426 CYALCNKTFRTTFKTLLLCQC 446

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 417 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 473
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 474 IYC-RSPDFRIAFQELL 489

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 404 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 460
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 461 IYC-RSPDFRIAFQELL 476

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++   F LCW PFFL+ I+          +P+ L +   WLGY +S +NPI
Sbjct: 227 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPI 283
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF RLL
Sbjct: 284 IYC-RSPDFRKAFKRLL 299

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 403 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 459
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 460 IYC-RSPDFRIAFQELL 475

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++   F LCW PFFL+ I+          +P+ L +   WLGY +S +NPI
Sbjct: 225 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPI 281
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF RLL
Sbjct: 282 IYC-RSPDFRKAFKRLL 297

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 404 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 460
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 461 IYC-RSPDFRIAFQELL 476

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 372 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 428
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 429 IYC-RSPDFRIAFQELL 444

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 269 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 325
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 326 IYC-RSPDFRIAFQELL 341

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 268 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 324
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 325 IYC-RSPDFRIAFQELL 340

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 245 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 301
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 302 IYC-RSPDFRIAFQELL 317

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 212 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 268
Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 269 IYC-RSPDFRIAFQELL 284

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+K ++ +  +   F++ WAP+ ++ ++   C      IP  +  +  WL Y +S +NP 
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAP---CIPNTVWTIGYWLCYINSTINPA 439
Query: 107 IYTIFNRTFRAAFIRLLKC 125
            Y + N TF+  F  LL C
Sbjct: 440 CYALCNATFKKTFKHLLMC 458

>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At 3.35a Length = 520

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 52  KVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIF 111
           K + +V   F+ CWAP F+L +L   C    C I        L L   +S  NPIIYT+ 
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFR-AEYFLVLAVLNSGTNPIIYTLT 479
Query: 112 NRTFRAAFIRLL 123
           N+  R AFIR++
Sbjct: 480 NKEMRRAFIRIM 491

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 60  TFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           TF +CW PF +  +L  I P  Y     + + +  +WL   S++ NPIIY   N  FR  
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 119 FIRLLKC 125
           F    +C
Sbjct: 316 FKHAFRC 322

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 100
           ++++ E  A+K L ++   F LCW P  ++      CP   C+  P  L  + + L + +
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 442
Query: 101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
           S++NP IY    R FR  F ++++    +  +P +
Sbjct: 443 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 477

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 100
           ++++ E  A+K L ++   F LCW P  ++      CP   C+  P  L  + + L + +
Sbjct: 344 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 401
Query: 101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
           S++NP IY    R FR  F ++++    +  +P +
Sbjct: 402 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 436

>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 43  SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLW------- 95
           SV+  +    V   V   FV+CW P+ + +++       +C I ++     L+       
Sbjct: 400 SVQALRHGVLVARAVVIAFVVCWLPYHVRRLM-------FCYISDEQWTTFLFDFYHYFY 452
Query: 96  -----LGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC 127
                L Y SS +NPI+Y + +  FR  F+  L C C
Sbjct: 453 MLTNALAYASSAINPILYNLVSANFRQVFLSTLACLC 489

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFS- 100
           ++++ E  A+K L ++   F LCW P  ++      CP        D     LWL Y + 
Sbjct: 223 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCP--------DCSHAPLWLMYLAI 274
Query: 101 ------SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVND 141
                 S++NP IY    R FR  F ++++    +  +P +  +  +
Sbjct: 275 VLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAEN 321

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 63  LCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAF 119
           +CW P  +  +++A+  T + T        C+ LGY +S LNPI+Y   +  F+  F
Sbjct: 407 VCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCF 463

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFS- 100
           ++++ E  A+K L ++   F LCW P  ++      CP        D     LWL Y + 
Sbjct: 223 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCP--------DCSHAPLWLMYLAI 274
Query: 101 ------SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
                 S++NP IY    R FR  F ++++    +  +P +
Sbjct: 275 VLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-31
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	1e-30
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	3e-29
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	3e-29
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	4e-29
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	4e-29
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	3e-27
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	4e-27
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-26
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	5e-19
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	8e-19
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-18
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	1e-16
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	3e-16
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-11

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  118 bits (297), Expect = 2e-31
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRT-----RQASTAANSVRTEQKASKVLG 55
            S+    Q+ W + AV       +       +R           A      E+KA++++ 
Sbjct: 345 NSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVA 404

Query: 56  LVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTF 115
           +V   F++CW PFFL  +L   C T  C +  +L     WLGY +S LNP+IYT FN  F
Sbjct: 405 IVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPVIYTTFNIEF 462

Query: 116 RAAFIRLLKCKC 127
           R AF+++L C  
Sbjct: 463 RKAFLKILSCGR 474

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  116 bits (291), Expect = 1e-30
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)

Query: 28  KKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPE 87
                RT       ++++ E  A+K L ++   F LCW P  ++      CP      P 
Sbjct: 371 VITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD-CSHAPL 429

Query: 88  DLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRAT 144
            L  + + L + +S++NP IY    R FR  F ++++    +  +P +    +    
Sbjct: 430 WLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHHHHHH 486

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  112 bits (281), Expect = 3e-29
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 1   MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRT-----RQASTAANSVRTEQKASKVLG 55
            S+    Q+ W + AV       +       +R           A      E+K ++ + 
Sbjct: 332 NSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTIL 391

Query: 56  LVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTF 115
            +   F++ WAP+ ++ ++   C      IP  +  +  WL Y +S +NP  Y + N TF
Sbjct: 392 AILLAFIITWAPYNVMVLINTFCA---PCIPNTVWTIGYWLCYINSTINPACYALCNATF 448

Query: 116 RAAFIRLLKCKC 127
           +  F  LL C  
Sbjct: 449 KKTFKHLLMCHY 460

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  112 bits (282), Expect = 3e-29
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 25  KHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT 84
           +  +           A      E KA K LG++  TF LCW PFF++ I+  I       
Sbjct: 381 RAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NL 437

Query: 85  IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRAT 144
           I +++ I+  W+GY +S  NP+IY   +  FR AF  LL  +   +       S N    
Sbjct: 438 IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNTG 496

Query: 145 ASSG 148
             SG
Sbjct: 497 EQSG 500

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  111 bits (279), Expect = 4e-29
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILN 104
           + E  A+K L ++   F LCW P  ++      CP      P  L  + + L + +S++N
Sbjct: 347 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVN 405

Query: 105 PIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRS 138
           P IY    R FR  F ++++    +  +P +   
Sbjct: 406 PFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHH 439

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score =  111 bits (279), Expect = 4e-29
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 28  KKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPE 87
           +           A   +  E+KA+K LG +   F+LCW P+F+  ++ A C        E
Sbjct: 349 RVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCK---NCCNE 405

Query: 88  DLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQ 129
            L +  +WLGY +S LNP+IY + N  F+  F R+L  + G+
Sbjct: 406 HLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGE 447

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  107 bits (268), Expect = 3e-27
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 24  FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 83
              +++  R       ++     E KA K LG++  TF LCW PFF++ I+  I      
Sbjct: 394 LSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD---N 450

Query: 84  TIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
            I +++ I+  W+GY +S  NP+IY   +  FR AF  LL  +   +       S N   
Sbjct: 451 LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNT 509

Query: 144 TASSG 148
              SG
Sbjct: 510 GEQSG 514

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =  106 bits (266), Expect = 4e-27
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 4   EYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVL 63
            +        ++                 RT      A+         K + +V   F+ 
Sbjct: 373 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIA 432

Query: 64  CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL 123
           CWAP F+L +L   C    C I        L L   +S  NPIIYT+ N+  R AFIR++
Sbjct: 433 CWAPLFILLLLDVGCKVKTCDILF-RAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM 491

Query: 124 KCKC 127
               
Sbjct: 492 GRPL 495

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  102 bits (256), Expect = 2e-26
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 17  TSVILGLFKHI-KKAQRRTR------QASTAANSVRTEQKASKVLGLVFFTFVLCWAPFF 69
             +++ +   + ++A+ + R      +  T+   +  E KA K LG++   F LCW PFF
Sbjct: 190 LLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFF 249

Query: 70  LLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC 127
           L+ I+          +P+ L +   WLGY +S +NPIIY   +  FR AF RLL    
Sbjct: 250 LVNIVNVFNR---DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR 303

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 82.4 bits (204), Expect = 8e-19
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 1/141 (0%)

Query: 25  KHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT 84
             +  ++     +      V  ++K  K++ +V  TF +CW PF +  +L  I P  Y  
Sbjct: 221 ITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLK 280

Query: 85  -IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
              + + +  +WL   S++ NPIIY   N  FR  F    +C             +    
Sbjct: 281 KFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTR 340

Query: 144 TASSGPATVPLTLPPTPGRTL 164
              +  +   ++   T   T+
Sbjct: 341 YLQTQGSVYKVSRLETTISTV 361

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 6/181 (3%)

Query: 5   YCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLC 64
           +CY       +V++    +    K+   +  + +        E + +K+  ++   F+L 
Sbjct: 218 FCYFNIV--MSVSNHEKEMAAMAKRLNAKELRKA--QAGANAEMRLAKISIVIVSQFLLS 273

Query: 65  WAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLK 124
           W+P+ ++ +L    P     +      + +     S+I NP+IY++ +  FR A  +   
Sbjct: 274 WSPYAVVALLAQFGPL--EWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331

Query: 125 CKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEA 184
                     +    +  A             P      +   M  +             
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQ 391

Query: 185 G 185
           G
Sbjct: 392 G 392

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 23  LFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGY 82
           L   +K+A  + +++   A + + E++ ++++ ++   F++CW P+  +           
Sbjct: 227 LVFTVKEAAAQQQES---ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD 283

Query: 83  CTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDR 142
                    +  +    S++ NP+IY + N+ FR   +  L C    +       +V+  
Sbjct: 284 --FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKT 341

Query: 143 ATASSGPA 150
            T+   PA
Sbjct: 342 ETSQVAPA 349

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 75.8 bits (186), Expect = 3e-16
 Identities = 22/103 (21%), Positives = 43/103 (41%)

Query: 31  QRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLG 90
                    A    R  ++ ++++ +V   F++CW P  +  I++A+      T      
Sbjct: 362 TTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSW 421

Query: 91  IVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKP 133
             C+ LGY +S LNP++Y   +  F+  F          + +P
Sbjct: 422 HFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTIEQP 464

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 2   SVEYCYQRNWHKQAVTSV-ILGLFKHIKKAQR-----RTRQASTAANSVRTEQKASKVLG 55
           S+    Q+ W + AV         +   +A+R     RT       +    ++KA K   
Sbjct: 357 SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTV 416

Query: 56  LVFFTFVLCWAPFFLLQILQAICPTGY----CTIPEDLGI---VCLWLGYFSSILNPIIY 108
           ++   F  CW P+++   + +          C     +     +   L +F   LNPI+Y
Sbjct: 417 ILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILY 476

Query: 109 TIFNRTFRAAFIRLLKC 125
                 F+ +    L  
Sbjct: 477 AFLGAKFKTSAQHALTS 493

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.89
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.86
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.85
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.84
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.84
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.83
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.82
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.82
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.82
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.82
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.82
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.81
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.8
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.8
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.78
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.78
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.78
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.77
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.08
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.69
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	90.74
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	87.03
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	84.32

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.89  E-value=8e-24  Score=186.26  Aligned_cols=86  Identities=26%  Similarity=0.525  Sum_probs=63.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-----ccchhHHHHHHHHHHhhcccchhhHHhccHHHHHH
Q psy3682          44 VRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC-----TIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA  118 (218)
Q Consensus        44 ~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~-----~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~  118 (218)
                      .++++|++||+++|+++|++||+||+++.++..+.+....     .....++.++.+|+|+|||+||+||+++|++||++
T Consensus       401 ~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~a  480 (510)
T 4grv_A          401 VQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQV  480 (510)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3568899999999999999999999999999888655211     12234566889999999999999999999999999


Q ss_pred             HHHHhccccCC
Q psy3682         119 FIRLLKCKCGQ  129 (218)
Q Consensus       119 ~~~~~~~~~~~  129 (218)
                      |+++++|+|.+
T Consensus       481 Fk~iL~C~C~~  491 (510)
T 4grv_A          481 FLSTLACLCPG  491 (510)
T ss_dssp             -----------
T ss_pred             HHHHHhhcCCC
Confidence            99999886654

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.86  E-value=3.2e-21  Score=169.07  Aligned_cols=78  Identities=41%  Similarity=0.773  Sum_probs=69.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcc
Q psy3682          46 TEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKC  125 (218)
Q Consensus        46 ~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~  125 (218)
                      +|+|++|++++|+++|++||+||+++.++..+...   ..+..++.++.+|+++||++||+||++ +++||++|+++++|
T Consensus       402 ~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~---~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~  477 (500)
T 2rh1_A          402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL  477 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT---SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhh
Confidence            68899999999999999999999999999988643   456778889999999999999999996 99999999999976


Q ss_pred             cc
Q psy3682         126 KC  127 (218)
Q Consensus       126 ~~  127 (218)
                      ++
T Consensus       478 ~~  479 (500)
T 2rh1_A          478 RR  479 (500)
T ss_dssp             --
T ss_pred             hc
Confidence            43

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.85  E-value=6.5e-21  Score=165.23  Aligned_cols=86  Identities=27%  Similarity=0.541  Sum_probs=76.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHh
Q psy3682          44 VRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL  123 (218)
Q Consensus        44 ~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~  123 (218)
                      .++++|++||+++++++|++||+||+++.++..+.... ......+..++.+|+++||++||+||++++++||+++++++
T Consensus       387 ~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~  465 (488)
T 3eml_A          387 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII  465 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHH
Confidence            45789999999999999999999999999999887542 34566778899999999999999999999999999999999


Q ss_pred             ccccCCC
Q psy3682         124 KCKCGQV  130 (218)
Q Consensus       124 ~~~~~~~  130 (218)
                      +|.+.+.
T Consensus       466 ~~~~~~~  472 (488)
T 3eml_A          466 RSHVLRQ  472 (488)
T ss_dssp             HHTTSCC
T ss_pred             hhccccc
Confidence            8766554

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.84  E-value=1.1e-20  Score=162.11  Aligned_cols=86  Identities=27%  Similarity=0.541  Sum_probs=73.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHh
Q psy3682          44 VRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL  123 (218)
Q Consensus        44 ~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~  123 (218)
                      .++++|++|++++++++|++||+||+++.++..+.... ......+..++.+|+++||++||+||++++++||+++++++
T Consensus       346 ~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~  424 (447)
T 4eiy_A          346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII  424 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcc-cccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHH
Confidence            46789999999999999999999999999998886542 23456678899999999999999999999999999999999


Q ss_pred             ccccCCC
Q psy3682         124 KCKCGQV  130 (218)
Q Consensus       124 ~~~~~~~  130 (218)
                      ++.+++.
T Consensus       425 ~~~~~r~  431 (447)
T 4eiy_A          425 RSHVLRQ  431 (447)
T ss_dssp             HHTC---
T ss_pred             HHHHhcc
Confidence            8765554

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=168.64  Aligned_cols=88  Identities=18%  Similarity=0.294  Sum_probs=61.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHH
Q psy3682          43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG--YCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFI  120 (218)
Q Consensus        43 ~~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~--~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~  120 (218)
                      +.++++|++||+++|+++|++||+||+++.++..+....  .......+..++.+|+++||++||+||++++++||++++
T Consensus       381 ~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~  460 (484)
T 3vw7_A          381 NRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVY  460 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHH
Confidence            345678999999999999999999999999998765331  123344666799999999999999999999999999999


Q ss_pred             HHhccccCCC
Q psy3682         121 RLLKCKCGQV  130 (218)
Q Consensus       121 ~~~~~~~~~~  130 (218)
                      ++++|++.+.
T Consensus       461 ~ll~~~~~~~  470 (484)
T 3vw7_A          461 SILCCKESSD  470 (484)
T ss_dssp             ----------
T ss_pred             HHHhhccCCC
Confidence            9998765543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.83  E-value=2.6e-20  Score=164.12  Aligned_cols=83  Identities=33%  Similarity=0.505  Sum_probs=69.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcc
Q psy3682          46 TEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKC  125 (218)
Q Consensus        46 ~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~  125 (218)
                      +++|++||+++++++|++||+||+++.++..+...... .......++.+++++|||+||+||++++++||+++++++++
T Consensus       415 ~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  493 (520)
T 3v2y_A          415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTC-DILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGR  493 (520)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTC-STTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            58899999999999999999999999999887654221 23444557788999999999999999999999999999977


Q ss_pred             ccCC
Q psy3682         126 KCGQ  129 (218)
Q Consensus       126 ~~~~  129 (218)
                      .+..
T Consensus       494 ~~~~  497 (520)
T 3v2y_A          494 PLEV  497 (520)
T ss_dssp             CC--
T ss_pred             hccc
Confidence            5544

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.82  E-value=2.7e-20  Score=160.34  Aligned_cols=82  Identities=24%  Similarity=0.533  Sum_probs=70.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHh
Q psy3682          44 VRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL  123 (218)
Q Consensus        44 ~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~  123 (218)
                      .++++|++||+++++++|++||+||+++.++..+...........+..++.+|+++||++||+||++++++||+++++++
T Consensus       375 ~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc  454 (464)
T 4dkl_A          375 DRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFC  454 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHh
Confidence            35678999999999999999999999999999887553344556667789999999999999999999999999999985


Q ss_pred             cc
Q psy3682         124 KC  125 (218)
Q Consensus       124 ~~  125 (218)
                      ++
T Consensus       455 ~~  456 (464)
T 4dkl_A          455 IP  456 (464)
T ss_dssp             C-
T ss_pred             cc
Confidence            44

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.82  E-value=4.6e-20  Score=159.87  Aligned_cols=80  Identities=44%  Similarity=0.970  Sum_probs=71.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcc
Q psy3682          46 TEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKC  125 (218)
Q Consensus        46 ~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~  125 (218)
                      +++|++||+++++++|++||+||+++.++..+...  ......+..++.+|+++||++||+||++++++||++++++++|
T Consensus       395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~--~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  472 (481)
T 3pbl_A          395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC  472 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc--ccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhc
Confidence            58999999999999999999999999998887654  4567788889999999999999999999999999999999986


Q ss_pred             cc
Q psy3682         126 KC  127 (218)
Q Consensus       126 ~~  127 (218)
                      ++
T Consensus       473 ~~  474 (481)
T 3pbl_A          473 GR  474 (481)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.82  E-value=2.9e-19  Score=149.72  Aligned_cols=112  Identities=25%  Similarity=0.453  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcc----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CcccchhH
Q psy3682          15 AVTSVILGLFKHIKKAQRRTRQAS----TAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG-YCTIPEDL   89 (218)
Q Consensus        15 ~~~~ii~~~y~~i~~~~~~~~~~~----~~~~~~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~-~~~~~~~~   89 (218)
                      +.+++++++|..|.+..++.+...    ...++.++++|++|++++++++|++||+|++++.++..+.... .......+
T Consensus       207 lp~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~  286 (364)
T 2ks9_A          207 LPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQV  286 (364)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCCSSSSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHH
Confidence            456788889999998877544321    1223456789999999999999999999999999888876542 12234556


Q ss_pred             HHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhccc
Q psy3682          90 GIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCK  126 (218)
Q Consensus        90 ~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~  126 (218)
                      ..+..+++++||++||+||++++++||++++++++|+
T Consensus       287 ~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~  323 (364)
T 2ks9_A          287 YLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCC  323 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Confidence            7788899999999999999999999999999999764

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.82  E-value=4e-20  Score=159.55  Aligned_cols=83  Identities=28%  Similarity=0.727  Sum_probs=70.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhc
Q psy3682          45 RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLK  124 (218)
Q Consensus        45 ~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~  124 (218)
                      ++++|++|++++++++|++||+||+++.++..+...   .....+..++.+|+++||++||+||++++++||++++++++
T Consensus       381 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~---~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~  457 (467)
T 3uon_A          381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP---CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM  457 (467)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST---TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHh
Confidence            467999999999999999999999999999988764   34577888999999999999999999999999999999997


Q ss_pred             cccCCC
Q psy3682         125 CKCGQV  130 (218)
Q Consensus       125 ~~~~~~  130 (218)
                      |.+++.
T Consensus       458 c~~~~~  463 (467)
T 3uon_A          458 CHYKNI  463 (467)
T ss_dssp             ------
T ss_pred             hhccCC
Confidence            765443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.82  E-value=9.9e-20  Score=151.28  Aligned_cols=110  Identities=16%  Similarity=0.381  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhc-chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHH
Q psy3682          15 AVTSVILGLFKHIKKAQRRTRQA-STAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVC   93 (218)
Q Consensus        15 ~~~~ii~~~y~~i~~~~~~~~~~-~~~~~~~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~   93 (218)
                      +.+++++++|..|.+..++.++. ....++.++++|++|++++++++|++||+|++++.++..+...  ......+..++
T Consensus       215 ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~--~~~~~~~~~~~  292 (349)
T 1u19_A          215 IPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG--SDFGPIFMTIP  292 (349)
T ss_dssp             HHHHHHHHHHTTTTTSSCSCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--SCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCC--cccchHHHHHH
Confidence            45778889999998887765443 2233455678899999999999999999999999888777644  33456677788


Q ss_pred             HHHHHhhcccchhhHHhccHHHHHHHHHHhccc
Q psy3682          94 LWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCK  126 (218)
Q Consensus        94 ~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~  126 (218)
                      .+++++||++||+||++++++||++++++++|.
T Consensus       293 ~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~  325 (349)
T 1u19_A          293 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCG  325 (349)
T ss_dssp             HHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhHHHHHHHhHHHHHHHHHHhccc
Confidence            999999999999999999999999999999764

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.81  E-value=8.5e-20  Score=156.88  Aligned_cols=82  Identities=39%  Similarity=0.918  Sum_probs=70.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhc
Q psy3682          45 RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLK  124 (218)
Q Consensus        45 ~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~  124 (218)
                      ++++|++||+++++++|++||+||+++.++..+...   .....+..++.+|+++||++||+||++++++||++++++++
T Consensus       366 ~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~---~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~  442 (452)
T 3rze_A          366 NRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKN---CCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILH  442 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CSCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHH
Confidence            478999999999999999999999999999888655   23456677999999999999999999999999999999998


Q ss_pred             cccCC
Q psy3682         125 CKCGQ  129 (218)
Q Consensus       125 ~~~~~  129 (218)
                      |++.+
T Consensus       443 ~~~~~  447 (452)
T 3rze_A          443 IRSGE  447 (452)
T ss_dssp             C----
T ss_pred             hcccc
Confidence            76543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=147.29  Aligned_cols=104  Identities=24%  Similarity=0.428  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-------ccch
Q psy3682          15 AVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC-------TIPE   87 (218)
Q Consensus        15 ~~~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~-------~~~~   87 (218)
                      ..+.++..+|.++.+..++.        ..++++|++|++++++++|++||+||+++.++..+......       ....
T Consensus       185 ~p~~i~~~~y~~i~~~~~~~--------~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (296)
T 2lnl_A          185 VPLFVMLFCYGFTLRTLFKA--------HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIG  256 (296)
T ss_dssp             HHHHHHHHHHHHHTTTSSSC--------CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------hhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHH
Confidence            45667777887776554332        23557899999999999999999999999999888755211       1123


Q ss_pred             hHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhccc
Q psy3682          88 DLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCK  126 (218)
Q Consensus        88 ~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~  126 (218)
                      .+..++.+|+++||++||+||++++++||++++++++|+
T Consensus       257 ~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~cr  295 (296)
T 2lnl_A          257 RALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMH  295 (296)
T ss_dssp             HHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            456688999999999999999999999999999999774

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.78  E-value=1.3e-18  Score=142.19  Aligned_cols=109  Identities=31%  Similarity=0.550  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcch-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccch
Q psy3682          15 AVTSVILGLFKHIKKAQRRTRQAST-------AANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPE   87 (218)
Q Consensus        15 ~~~~ii~~~y~~i~~~~~~~~~~~~-------~~~~~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~~~~~~~   87 (218)
                      +.+++++++|..|.+..++..+...       .....++++|++|++++++++|++||+|++++.++..+...   ....
T Consensus       188 ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~---~~~~  264 (315)
T 4amj_A          188 IPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD---LVPD  264 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---SSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---cchH
Confidence            4577889999999888776533211       11223468899999999999999999999999998887654   3456


Q ss_pred             hHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcccc
Q psy3682          88 DLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC  127 (218)
Q Consensus        88 ~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~~  127 (218)
                      .+..++.+++++||++||+||+ ++++||++++++++|..
T Consensus       265 ~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~  303 (315)
T 4amj_A          265 WLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR  303 (315)
T ss_dssp             HHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCC
Confidence            6777889999999999999999 99999999999997643

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.78  E-value=8.5e-19  Score=151.17  Aligned_cols=109  Identities=18%  Similarity=0.313  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcc-------------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy3682          15 AVTSVILGLFKHIKKAQRRTRQAS-------------TAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG   81 (218)
Q Consensus        15 ~~~~ii~~~y~~i~~~~~~~~~~~-------------~~~~~~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~   81 (218)
                      +.+++|+++|..|.+.+++.++..             ...+..++++|++|++++++++|++||+|++++.++..+... 
T Consensus       211 lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~-  289 (448)
T 2z73_A          211 GPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPL-  289 (448)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCc-
Confidence            446788889999887665433211             011123458899999999999999999999999998887643 


Q ss_pred             CcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcc
Q psy3682          82 YCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKC  125 (218)
Q Consensus        82 ~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~  125 (218)
                       ......+..+..+++++||++||+||++++++||+++++++++
T Consensus       290 -~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~  332 (448)
T 2z73_A          290 -EWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW  332 (448)
T ss_dssp             -GGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred             -ccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence             2344566778899999999999999999999999999999853

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.78  E-value=1.4e-19  Score=157.71  Aligned_cols=84  Identities=19%  Similarity=0.399  Sum_probs=69.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------CcccchhHHHHHHHHHHhhcccchhhHHhccHHHH
Q psy3682          44 VRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG-------YCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFR  116 (218)
Q Consensus        44 ~~~~~k~~r~~~~iv~~F~icw~P~~i~~l~~~~~~~~-------~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR  116 (218)
                      .++++|++|++++++++|++||+||+++.++..+....       .......+..++.+|+++||++||+||++++++||
T Consensus       405 ~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR  484 (502)
T 3odu_A          405 GHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFK  484 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCC
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHH
Confidence            45579999999999999999999999999888764221       02233445568999999999999999999999999


Q ss_pred             HHHHHHhcccc
Q psy3682         117 AAFIRLLKCKC  127 (218)
Q Consensus       117 ~~~~~~~~~~~  127 (218)
                      ++++++++|+.
T Consensus       485 ~~~~~ll~~~~  495 (502)
T 3odu_A          485 TSAQHALTSGR  495 (502)
T ss_dssp             CCHHHHHSSCS
T ss_pred             HHHHHHhccCC
Confidence            99999997653

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.77  E-value=1.7e-18  Score=152.18  Aligned_cols=110  Identities=31%  Similarity=0.573  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhcch--------------------------hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3682          14 QAVTSVILGLFKHIKKAQRRTRQAST--------------------------AANSVRTEQKASKVLGLVFFTFVLCWAP   67 (218)
Q Consensus        14 ~~~~~ii~~~y~~i~~~~~~~~~~~~--------------------------~~~~~~~~~k~~r~~~~iv~~F~icw~P   67 (218)
                      ++.+++|+++|..|.+.+++..+...                          ..+..++++|+++++++++++|++||+|
T Consensus       358 ~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP  437 (514)
T 3sn6_R          358 YVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP  437 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999887765432110                          1112246789999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcccchhHHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcccc
Q psy3682          68 FFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC  127 (218)
Q Consensus        68 ~~i~~l~~~~~~~~~~~~~~~~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~~  127 (218)
                      |+++.++..+...   .....+..++.+++++||++||+||+ ++++||++++++++|.+
T Consensus       438 ~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~  493 (514)
T 3sn6_R          438 FFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR  493 (514)
T ss_dssp             HHHHHHHHHHSTT---SSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHccc---ccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCc
Confidence            9999998887543   34566788899999999999999999 89999999999997643

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.08  E-value=3e-11  Score=69.01  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhhcccchhhHHhccHHHHHHHHHHhcc
Q psy3682          89 LGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKC  125 (218)
Q Consensus        89 ~~~v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~  125 (218)
                      ++.++.+++++||++||+||++++++||++++++++|
T Consensus         2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~   38 (40)
T 2koe_A            2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS   38 (40)
T ss_dssp             HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhh
Confidence            4567889999999999999999999999999998854

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.69  E-value=5e-10  Score=61.02  Aligned_cols=30  Identities=30%  Similarity=0.694  Sum_probs=26.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3682          47 EQKASKVLGLVFFTFVLCWAPFFLLQILQA   76 (218)
Q Consensus        47 ~~k~~r~~~~iv~~F~icw~P~~i~~l~~~   76 (218)
                      |+|++|++++++++|++||+||+++.++..
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            467889999999999999999999877654

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=87.03  E-value=4.4  Score=33.49  Aligned_cols=39  Identities=10%  Similarity=0.045  Sum_probs=25.7

Q ss_pred             HHHHHHHhhcccchhhHHhccHHHHHHHHHHhccccCCC
Q psy3682          92 VCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQV  130 (218)
Q Consensus        92 v~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~~~~~  130 (218)
                      ....++..=..+|+.+--+.---+-+.|++-++..+++.
T Consensus       389 ~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~  427 (447)
T 4eiy_A          389 WLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHH
Confidence            444555555666777777777777788888776655444

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=84.32  E-value=2  Score=35.98  Aligned_cols=30  Identities=13%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             HHhhcccchhhHHhccHHHHHHHHHHhccc
Q psy3682          97 GYFSSILNPIIYTIFNRTFRAAFIRLLKCK  126 (218)
Q Consensus        97 ~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~  126 (218)
                      +.+|.++==+.--=+.+.+++.++.+++|+
T Consensus       308 s~~NPiIY~~~~~~fR~~~~~~~~~~~~~~  337 (448)
T 2z73_A          308 AIHNPMIYSVSHPKFREAISQTFPWVLTCC  337 (448)
T ss_dssp             GGSHHHHHHHHCHHHHHHHHHHCGGGGSTT
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            444555555555556677777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	9e-21

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.6 bits (213), Expect = 9e-21
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 24  FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 83
            + +   +    Q   +A + + E++ ++++ ++   F++CW P+  +            
Sbjct: 224 GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG--S 281

Query: 84  TIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
                   +  +    S++ NP+IY + N+ FR   +  L C    +       +V+   
Sbjct: 282 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTE 341

Query: 144 TASSGPA 150
           T+   PA
Sbjct: 342 TSQVAPA 348